HEADER HYDROLASE 25-AUG-09 3ISI TITLE CRYSTAL STRUCTURE OF SCO3058 WITH BOUND INHIBITOR L-ALA-L-ASP TITLE 2 PHOSPHINODIPEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: RENAL DIPEPTIDASE; COMPND 3 CHAIN: X; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOMYCES COELICOLOR; SOURCE 3 ORGANISM_TAXID: 1902; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: ROSETTA DE(3); SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS TIM-BARREL, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR T.T.NGUYEN REVDAT 2 06-SEP-23 3ISI 1 REMARK LINK REVDAT 1 04-AUG-10 3ISI 0 JRNL AUTH T.T.NGUYEN,J.A.CUMMINGS,C.-L.TSAI,D.P.BARONDEAU,F.M.RAUSHEL JRNL TITL CRYSTAL STRUCTURE OF SCO3058 WITH BOUND INHIBITOR JRNL TITL 2 L-ALA-L-ASP PHOSPHINODIPEPTIDE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 83.62 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 27539 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.178 REMARK 3 R VALUE (WORKING SET) : 0.175 REMARK 3 FREE R VALUE : 0.229 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1476 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.26 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1919 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.84 REMARK 3 BIN R VALUE (WORKING SET) : 0.1920 REMARK 3 BIN FREE R VALUE SET COUNT : 108 REMARK 3 BIN FREE R VALUE : 0.2820 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2983 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 17 REMARK 3 SOLVENT ATOMS : 345 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.97 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.21000 REMARK 3 B22 (A**2) : -2.21000 REMARK 3 B33 (A**2) : 3.32000 REMARK 3 B12 (A**2) : -1.11000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.192 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.179 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.118 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.555 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.947 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.905 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3066 ; 0.021 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4172 ; 1.725 ; 1.951 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 393 ; 6.869 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 148 ;33.352 ;23.176 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 476 ;13.144 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 32 ;16.853 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 466 ; 0.122 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2392 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1504 ; 0.194 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2083 ; 0.290 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 276 ; 0.168 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 1 ; 0.135 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 34 ; 0.187 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 15 ; 0.177 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2011 ; 0.923 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3112 ; 1.442 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1189 ; 2.682 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1060 ; 3.927 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3ISI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-SEP-09. REMARK 100 THE DEPOSITION ID IS D_1000054810. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-APR-09 REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL7-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9756 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : NULL REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 83.620 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASES REMARK 200 STARTING MODEL: 3ITC REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.26 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.26 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M MAGNESIUM CHLORIDE HEXAHYDRATE, REMARK 280 0.1 TRIS PH 8.5, 18% PEG-4000, VAPOR DIFFUSION, HANGING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 34.86667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 69.73333 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 69.73333 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 34.86667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: X REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR X 393 REMARK 465 ALA X 394 REMARK 465 ALA X 395 REMARK 465 GLU X 396 REMARK 465 GLN X 397 REMARK 465 PRO X 398 REMARK 465 GLU X 399 REMARK 465 GLY X 400 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU X 308 CG GLU X 308 CD 0.115 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG X 216 NE - CZ - NH1 ANGL. DEV. = -4.0 DEGREES REMARK 500 ASP X 301 CB - CG - OD2 ANGL. DEV. = 5.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS X 20 113.58 -166.15 REMARK 500 HIS X 150 -133.00 -97.02 REMARK 500 PRO X 164 150.16 -49.08 REMARK 500 HIS X 191 -21.85 64.90 REMARK 500 HIS X 212 75.48 -164.07 REMARK 500 SER X 214 -151.69 -106.26 REMARK 500 ASP X 220 99.09 -67.85 REMARK 500 VAL X 245 108.19 -46.32 REMARK 500 ASP X 322 9.63 57.47 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG X 307 0.09 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN X3000 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS X 20 NE2 REMARK 620 2 ASP X 22 OD1 101.3 REMARK 620 3 GLU X 123 OE1 87.4 140.9 REMARK 620 4 HOH X1318 O 99.2 100.7 115.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN X3001 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU X 123 OE2 REMARK 620 2 HIS X 191 NE2 84.8 REMARK 620 3 HIS X 212 NE2 98.8 108.2 REMARK 620 4 HOH X1318 O 105.1 156.8 91.2 REMARK 620 5 B88 X2000 O5 94.9 87.4 160.0 71.2 REMARK 620 6 B88 X2000 O1 173.7 93.0 87.5 74.8 79.0 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE B88 X 2000 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN X 3000 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN X 3001 DBREF 3ISI X 1 400 UNP Q93J45 Q93J45_STRCO 1 400 SEQRES 1 X 400 MET THR SER LEU GLU LYS ALA ARG GLU LEU LEU ARG GLU SEQRES 2 X 400 PHE PRO VAL VAL ASP GLY HIS ASN ASP LEU PRO TRP ALA SEQRES 3 X 400 LEU ARG GLU GLN VAL ARG TYR ASP LEU ASP ALA ARG ASP SEQRES 4 X 400 ILE ALA ALA ASP GLN SER ALA HIS LEU HIS THR ASP LEU SEQRES 5 X 400 ALA ARG LEU ARG SER GLY GLY VAL GLY ALA GLN TYR TRP SEQRES 6 X 400 SER VAL TYR VAL ARG SER ASP LEU PRO GLY ALA VAL THR SEQRES 7 X 400 ALA THR LEU GLU GLN ILE ASP CYS VAL ARG ARG LEU ILE SEQRES 8 X 400 ASP ARG HIS PRO GLY GLU LEU ARG ALA ALA LEU THR ALA SEQRES 9 X 400 ALA ASP MET GLU ALA ALA ARG ALA GLU GLY ARG ILE ALA SEQRES 10 X 400 SER LEU MET GLY ALA GLU GLY GLY HIS SER ILE ASP ASN SEQRES 11 X 400 SER LEU ALA THR LEU ARG ALA LEU TYR ALA LEU GLY VAL SEQRES 12 X 400 ARG TYR MET THR LEU THR HIS ASN ASP ASN ASN ALA TRP SEQRES 13 X 400 ALA ASP SER ALA THR ASP GLU PRO GLY VAL GLY GLY LEU SEQRES 14 X 400 SER ALA PHE GLY ARG GLU VAL VAL ARG GLU MET ASN ARG SEQRES 15 X 400 GLU GLY MET LEU VAL ASP LEU SER HIS VAL ALA ALA THR SEQRES 16 X 400 THR MET ARG ASP ALA LEU ASP THR SER THR ALA PRO VAL SEQRES 17 X 400 ILE PHE SER HIS SER SER SER ARG ALA VAL CYS ASP HIS SEQRES 18 X 400 PRO ARG ASN ILE PRO ASP ASP VAL LEU GLU ARG LEU SER SEQRES 19 X 400 ALA ASN GLY GLY MET ALA MET VAL THR PHE VAL PRO LYS SEQRES 20 X 400 PHE VAL LEU GLN ALA ALA VAL ASP TRP THR ALA GLU ALA SEQRES 21 X 400 ASP ASP ASN MET ARG ALA HIS GLY PHE HIS HIS LEU ASP SEQRES 22 X 400 SER SER PRO GLU ALA MET LYS VAL HIS ALA ALA PHE GLU SEQRES 23 X 400 GLU ARG VAL PRO ARG PRO VAL ALA THR VAL SER THR VAL SEQRES 24 X 400 ALA ASP HIS LEU ASP HIS MET ARG GLU VAL ALA GLY VAL SEQRES 25 X 400 ASP HIS LEU GLY ILE GLY GLY ASP TYR ASP GLY THR PRO SEQRES 26 X 400 PHE THR PRO ASP GLY LEU GLY ASP VAL SER GLY TYR PRO SEQRES 27 X 400 ASN LEU ILE ALA GLU LEU LEU ASP ARG GLY TRP SER GLN SEQRES 28 X 400 SER ASP LEU ALA LYS LEU THR TRP LYS ASN ALA VAL ARG SEQRES 29 X 400 VAL LEU ASP ALA ALA GLU ASP VAL SER ARG GLY LEU ARG SEQRES 30 X 400 ALA ALA ARG GLY PRO SER ASN ALA THR ILE GLU GLN LEU SEQRES 31 X 400 ASP GLY THR ALA ALA GLU GLN PRO GLU GLY HET B88 X2000 15 HET ZN X3000 1 HET ZN X3001 1 HETNAM B88 (2S)-2-{[(S)-[(1R)-1-AMINOETHYL](HYDROXY) HETNAM 2 B88 PHOSPHORYL]METHYL}BUTANEDIOIC ACID HETNAM ZN ZINC ION FORMUL 2 B88 C7 H14 N O6 P FORMUL 3 ZN 2(ZN 2+) FORMUL 5 HOH *345(H2 O) HELIX 1 1 THR X 2 PHE X 14 1 13 HELIX 2 2 ASP X 22 ARG X 32 1 11 HELIX 3 3 ASP X 34 ASP X 39 5 6 HELIX 4 4 ASP X 51 GLY X 59 1 9 HELIX 5 5 GLY X 75 HIS X 94 1 20 HELIX 6 6 THR X 103 GLY X 114 1 12 HELIX 7 7 GLY X 125 ASP X 129 5 5 HELIX 8 8 SER X 131 LEU X 141 1 11 HELIX 9 9 SER X 170 GLY X 184 1 15 HELIX 10 10 ALA X 193 SER X 204 1 12 HELIX 11 11 PRO X 226 ARG X 232 1 7 HELIX 12 12 ARG X 232 GLY X 237 1 6 HELIX 13 13 VAL X 245 LEU X 250 1 6 HELIX 14 14 LEU X 250 HIS X 267 1 18 HELIX 15 15 SER X 275 VAL X 289 1 15 HELIX 16 16 THR X 295 GLY X 311 1 17 HELIX 17 17 GLY X 336 ARG X 347 1 12 HELIX 18 18 SER X 350 TRP X 359 1 10 HELIX 19 19 TRP X 359 ARG X 380 1 22 HELIX 20 20 THR X 386 GLY X 392 1 7 SHEET 1 A 4 VAL X 16 ASN X 21 0 SHEET 2 A 4 VAL X 60 SER X 66 1 O SER X 66 N ASN X 21 SHEET 3 A 4 ILE X 116 GLU X 123 1 O LEU X 119 N TRP X 65 SHEET 4 A 4 LEU X 98 ALA X 100 1 N ARG X 99 O SER X 118 SHEET 1 B 5 VAL X 16 ASN X 21 0 SHEET 2 B 5 VAL X 60 SER X 66 1 O SER X 66 N ASN X 21 SHEET 3 B 5 ILE X 116 GLU X 123 1 O LEU X 119 N TRP X 65 SHEET 4 B 5 VAL X 143 THR X 147 1 O ARG X 144 N MET X 120 SHEET 5 B 5 LEU X 186 ASP X 188 1 O LEU X 186 N ARG X 144 SHEET 1 C 3 ILE X 209 PHE X 210 0 SHEET 2 C 3 MET X 239 VAL X 242 1 O MET X 241 N PHE X 210 SHEET 3 C 3 LEU X 315 ILE X 317 1 O GLY X 316 N VAL X 242 LINK NE2 HIS X 20 ZN ZN X3000 1555 1555 2.07 LINK OD1 ASP X 22 ZN ZN X3000 1555 1555 2.21 LINK OE1 GLU X 123 ZN ZN X3000 1555 1555 2.13 LINK OE2 GLU X 123 ZN ZN X3001 1555 1555 2.20 LINK NE2 HIS X 191 ZN ZN X3001 1555 1555 2.10 LINK NE2 HIS X 212 ZN ZN X3001 1555 1555 2.18 LINK O HOH X1318 ZN ZN X3000 1555 1555 2.26 LINK O HOH X1318 ZN ZN X3001 1555 1555 1.89 LINK O5 B88 X2000 ZN ZN X3001 1555 1555 2.20 LINK O1 B88 X2000 ZN ZN X3001 1555 1555 2.38 SITE 1 AC1 17 ASP X 22 TYR X 68 GLU X 123 HIS X 150 SITE 2 AC1 17 HIS X 191 HIS X 212 ARG X 223 LYS X 247 SITE 3 AC1 17 PHE X 248 ASP X 320 GLY X 323 THR X 324 SITE 4 AC1 17 HOH X1213 HOH X1258 HOH X1318 ZN X3000 SITE 5 AC1 17 ZN X3001 SITE 1 AC2 7 HIS X 20 ASP X 22 GLU X 123 ASP X 320 SITE 2 AC2 7 HOH X1318 B88 X2000 ZN X3001 SITE 1 AC3 6 GLU X 123 HIS X 191 HIS X 212 HOH X1318 SITE 2 AC3 6 B88 X2000 ZN X3000 CRYST1 96.690 96.690 104.600 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010342 0.005971 0.000000 0.00000 SCALE2 0.000000 0.011942 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009560 0.00000