HEADER HYDROLASE 28-AUG-09 3ITC TITLE CRYSTAL STRUCTURE OF SCO3058 WITH BOUND CITRATE AND GLYCEROL COMPND MOL_ID: 1; COMPND 2 MOLECULE: RENAL DIPEPTIDASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOMYCES COELICOLOR; SOURCE 3 ORGANISM_TAXID: 1902; SOURCE 4 GENE: SCO3058, SCBAC19G2.13C; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TIM-BARREL HYDROLASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR T.T.NGUYEN,J.A.CUMMINGS,C.-L.TSAI,D.P.BARONDEAU,F.M.RAUSHEL REVDAT 2 21-FEB-24 3ITC 1 REMARK LINK REVDAT 1 02-FEB-10 3ITC 0 JRNL AUTH J.A.CUMMINGS,T.T.NGUYEN,A.A.FEDOROV,P.KOLB,C.XU,E.V.FEDOROV, JRNL AUTH 2 B.K.SHOICHET,D.P.BARONDEAU,S.C.ALMO,F.M.RAUSHEL JRNL TITL STRUCTURE, MECHANISM, AND SUBSTRATE PROFILE FOR SCO3058: THE JRNL TITL 2 CLOSEST BACTERIAL HOMOLOGUE TO HUMAN RENAL DIPEPTIDASE JRNL REF BIOCHEMISTRY V. 49 611 2010 JRNL REFN ISSN 0006-2960 JRNL PMID 20000809 JRNL DOI 10.1021/BI901935Y REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 58757 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : 0.167 REMARK 3 FREE R VALUE : 0.203 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 61986 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2983 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 21 REMARK 3 SOLVENT ATOMS : 505 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : NULL REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3ITC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-SEP-09. REMARK 100 THE DEPOSITION ID IS D_1000054840. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL7-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 58758 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASES REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.66 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.29 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 8.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 34.80367 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 69.60733 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 69.60733 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 34.80367 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 940 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 985 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR A 393 REMARK 465 ALA A 394 REMARK 465 ALA A 395 REMARK 465 GLU A 396 REMARK 465 GLN A 397 REMARK 465 PRO A 398 REMARK 465 GLU A 399 REMARK 465 GLY A 400 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 8 CD - NE - CZ ANGL. DEV. = 11.1 DEGREES REMARK 500 ARG A 8 NE - CZ - NH1 ANGL. DEV. = 3.9 DEGREES REMARK 500 ARG A 8 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 ARG A 8 NE - CZ - NH2 ANGL. DEV. = -3.9 DEGREES REMARK 500 TYR A 33 CB - CG - CD2 ANGL. DEV. = 5.7 DEGREES REMARK 500 TYR A 33 OH - CZ - CE2 ANGL. DEV. = 16.9 DEGREES REMARK 500 HIS A 49 CG - ND1 - CE1 ANGL. DEV. = 9.2 DEGREES REMARK 500 ARG A 56 NE - CZ - NH1 ANGL. DEV. = -3.6 DEGREES REMARK 500 ARG A 88 CG - CD - NE ANGL. DEV. = 23.5 DEGREES REMARK 500 ARG A 88 CD - NE - CZ ANGL. DEV. = 24.3 DEGREES REMARK 500 ARG A 89 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 ARG A 99 CD - NE - CZ ANGL. DEV. = 12.5 DEGREES REMARK 500 ARG A 111 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 TYR A 145 CA - CB - CG ANGL. DEV. = 12.8 DEGREES REMARK 500 TYR A 145 CB - CG - CD1 ANGL. DEV. = 4.9 DEGREES REMARK 500 HIS A 212 CB - CG - CD2 ANGL. DEV. = 11.3 DEGREES REMARK 500 HIS A 212 ND1 - CG - CD2 ANGL. DEV. = -8.7 DEGREES REMARK 500 HIS A 212 CG - ND1 - CE1 ANGL. DEV. = 14.4 DEGREES REMARK 500 HIS A 212 ND1 - CE1 - NE2 ANGL. DEV. = -11.2 DEGREES REMARK 500 SER A 214 O - C - N ANGL. DEV. = -11.3 DEGREES REMARK 500 SER A 215 C - N - CA ANGL. DEV. = 15.2 DEGREES REMARK 500 HIS A 221 CB - CG - CD2 ANGL. DEV. = 13.5 DEGREES REMARK 500 HIS A 221 ND1 - CG - CD2 ANGL. DEV. = -8.6 DEGREES REMARK 500 ARG A 223 NE - CZ - NH2 ANGL. DEV. = 3.7 DEGREES REMARK 500 ARG A 232 NE - CZ - NH2 ANGL. DEV. = 4.1 DEGREES REMARK 500 ARG A 288 CD - NE - CZ ANGL. DEV. = 9.9 DEGREES REMARK 500 ARG A 288 NE - CZ - NH2 ANGL. DEV. = 3.0 DEGREES REMARK 500 HIS A 302 CB - CG - CD2 ANGL. DEV. = 10.5 DEGREES REMARK 500 HIS A 302 CG - ND1 - CE1 ANGL. DEV. = 8.3 DEGREES REMARK 500 ARG A 307 NE - CZ - NH1 ANGL. DEV. = -3.9 DEGREES REMARK 500 TYR A 321 O - C - N ANGL. DEV. = -10.7 DEGREES REMARK 500 ASP A 322 C - N - CA ANGL. DEV. = 17.6 DEGREES REMARK 500 ARG A 347 NE - CZ - NH1 ANGL. DEV. = -4.2 DEGREES REMARK 500 ARG A 347 NE - CZ - NH2 ANGL. DEV. = 4.7 DEGREES REMARK 500 ARG A 364 NE - CZ - NH2 ANGL. DEV. = 3.6 DEGREES REMARK 500 ARG A 380 NE - CZ - NH1 ANGL. DEV. = 4.4 DEGREES REMARK 500 ARG A 380 NE - CZ - NH2 ANGL. DEV. = -5.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 20 110.40 -164.53 REMARK 500 TYR A 68 139.50 -39.63 REMARK 500 GLU A 123 79.98 -113.93 REMARK 500 HIS A 150 -131.45 -102.02 REMARK 500 HIS A 191 -14.61 69.03 REMARK 500 HIS A 212 81.45 -164.06 REMARK 500 SER A 214 -156.71 -114.14 REMARK 500 ASP A 322 21.77 42.98 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 501 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 20 NE2 REMARK 620 2 ASP A 22 OD1 101.1 REMARK 620 3 GLU A 123 OE1 95.0 135.4 REMARK 620 4 GOL A 504 O1 170.6 79.3 78.5 REMARK 620 5 HOH A 505 O 107.8 102.4 111.7 81.1 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 502 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 123 OE2 REMARK 620 2 HIS A 191 NE2 83.4 REMARK 620 3 HIS A 212 NE2 94.7 105.1 REMARK 620 4 CIT A 503 O5 175.5 93.2 89.0 REMARK 620 5 HOH A 505 O 92.5 146.2 108.7 88.6 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CIT A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 504 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3ISI RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF SCO3058 WITH BOUND INHIBITOR L-ALA-L-ASP REMARK 900 PHOSPHINODIPEPTIDE DBREF 3ITC A 1 400 UNP Q93J45 Q93J45_STRCO 1 400 SEQRES 1 A 400 MET THR SER LEU GLU LYS ALA ARG GLU LEU LEU ARG GLU SEQRES 2 A 400 PHE PRO VAL VAL ASP GLY HIS ASN ASP LEU PRO TRP ALA SEQRES 3 A 400 LEU ARG GLU GLN VAL ARG TYR ASP LEU ASP ALA ARG ASP SEQRES 4 A 400 ILE ALA ALA ASP GLN SER ALA HIS LEU HIS THR ASP LEU SEQRES 5 A 400 ALA ARG LEU ARG SER GLY GLY VAL GLY ALA GLN TYR TRP SEQRES 6 A 400 SER VAL TYR VAL ARG SER ASP LEU PRO GLY ALA VAL THR SEQRES 7 A 400 ALA THR LEU GLU GLN ILE ASP CYS VAL ARG ARG LEU ILE SEQRES 8 A 400 ASP ARG HIS PRO GLY GLU LEU ARG ALA ALA LEU THR ALA SEQRES 9 A 400 ALA ASP MET GLU ALA ALA ARG ALA GLU GLY ARG ILE ALA SEQRES 10 A 400 SER LEU MET GLY ALA GLU GLY GLY HIS SER ILE ASP ASN SEQRES 11 A 400 SER LEU ALA THR LEU ARG ALA LEU TYR ALA LEU GLY VAL SEQRES 12 A 400 ARG TYR MET THR LEU THR HIS ASN ASP ASN ASN ALA TRP SEQRES 13 A 400 ALA ASP SER ALA THR ASP GLU PRO GLY VAL GLY GLY LEU SEQRES 14 A 400 SER ALA PHE GLY ARG GLU VAL VAL ARG GLU MET ASN ARG SEQRES 15 A 400 GLU GLY MET LEU VAL ASP LEU SER HIS VAL ALA ALA THR SEQRES 16 A 400 THR MET ARG ASP ALA LEU ASP THR SER THR ALA PRO VAL SEQRES 17 A 400 ILE PHE SER HIS SER SER SER ARG ALA VAL CYS ASP HIS SEQRES 18 A 400 PRO ARG ASN ILE PRO ASP ASP VAL LEU GLU ARG LEU SER SEQRES 19 A 400 ALA ASN GLY GLY MET ALA MET VAL THR PHE VAL PRO LYS SEQRES 20 A 400 PHE VAL LEU GLN ALA ALA VAL ASP TRP THR ALA GLU ALA SEQRES 21 A 400 ASP ASP ASN MET ARG ALA HIS GLY PHE HIS HIS LEU ASP SEQRES 22 A 400 SER SER PRO GLU ALA MET LYS VAL HIS ALA ALA PHE GLU SEQRES 23 A 400 GLU ARG VAL PRO ARG PRO VAL ALA THR VAL SER THR VAL SEQRES 24 A 400 ALA ASP HIS LEU ASP HIS MET ARG GLU VAL ALA GLY VAL SEQRES 25 A 400 ASP HIS LEU GLY ILE GLY GLY ASP TYR ASP GLY THR PRO SEQRES 26 A 400 PHE THR PRO ASP GLY LEU GLY ASP VAL SER GLY TYR PRO SEQRES 27 A 400 ASN LEU ILE ALA GLU LEU LEU ASP ARG GLY TRP SER GLN SEQRES 28 A 400 SER ASP LEU ALA LYS LEU THR TRP LYS ASN ALA VAL ARG SEQRES 29 A 400 VAL LEU ASP ALA ALA GLU ASP VAL SER ARG GLY LEU ARG SEQRES 30 A 400 ALA ALA ARG GLY PRO SER ASN ALA THR ILE GLU GLN LEU SEQRES 31 A 400 ASP GLY THR ALA ALA GLU GLN PRO GLU GLY HET ZN A 501 1 HET ZN A 502 1 HET CIT A 503 13 HET GOL A 504 6 HETNAM ZN ZINC ION HETNAM CIT CITRIC ACID HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 ZN 2(ZN 2+) FORMUL 4 CIT C6 H8 O7 FORMUL 5 GOL C3 H8 O3 FORMUL 6 HOH *505(H2 O) HELIX 1 1 THR A 2 PHE A 14 1 13 HELIX 2 2 ASP A 22 ARG A 32 1 11 HELIX 3 3 ASP A 34 ASP A 39 5 6 HELIX 4 4 ASP A 51 GLY A 59 1 9 HELIX 5 5 GLY A 75 HIS A 94 1 20 HELIX 6 6 THR A 103 GLY A 114 1 12 HELIX 7 7 GLY A 125 ASP A 129 5 5 HELIX 8 8 SER A 131 LEU A 141 1 11 HELIX 9 9 SER A 170 GLY A 184 1 15 HELIX 10 10 ALA A 193 SER A 204 1 12 HELIX 11 11 PRO A 226 GLY A 237 1 12 HELIX 12 12 VAL A 245 LEU A 250 1 6 HELIX 13 13 LEU A 250 HIS A 267 1 18 HELIX 14 14 SER A 275 VAL A 289 1 15 HELIX 15 15 THR A 295 GLY A 311 1 17 HELIX 16 16 ASP A 333 SER A 335 5 3 HELIX 17 17 GLY A 336 ARG A 347 1 12 HELIX 18 18 SER A 350 TRP A 359 1 10 HELIX 19 19 TRP A 359 ARG A 380 1 22 HELIX 20 20 THR A 386 GLY A 392 1 7 SHEET 1 A 4 VAL A 16 ASN A 21 0 SHEET 2 A 4 VAL A 60 SER A 66 1 O SER A 66 N ASN A 21 SHEET 3 A 4 ILE A 116 GLU A 123 1 O ALA A 117 N GLN A 63 SHEET 4 A 4 LEU A 98 ALA A 100 1 N ARG A 99 O SER A 118 SHEET 1 B 5 VAL A 16 ASN A 21 0 SHEET 2 B 5 VAL A 60 SER A 66 1 O SER A 66 N ASN A 21 SHEET 3 B 5 ILE A 116 GLU A 123 1 O ALA A 117 N GLN A 63 SHEET 4 B 5 VAL A 143 THR A 147 1 O ARG A 144 N MET A 120 SHEET 5 B 5 LEU A 186 ASP A 188 1 O LEU A 186 N ARG A 144 SHEET 1 C 3 ILE A 209 PHE A 210 0 SHEET 2 C 3 MET A 239 VAL A 242 1 O MET A 241 N PHE A 210 SHEET 3 C 3 LEU A 315 ILE A 317 1 O GLY A 316 N ALA A 240 LINK NE2 HIS A 20 ZN ZN A 501 1555 1555 2.12 LINK OD1 ASP A 22 ZN ZN A 501 1555 1555 1.95 LINK OE1 GLU A 123 ZN ZN A 501 1555 1555 2.01 LINK OE2 GLU A 123 ZN ZN A 502 1555 1555 2.21 LINK NE2 HIS A 191 ZN ZN A 502 1555 1555 2.06 LINK NE2 HIS A 212 ZN ZN A 502 1555 1555 2.07 LINK ZN ZN A 501 O1 GOL A 504 1555 1555 2.64 LINK ZN ZN A 501 O HOH A 505 1555 1555 2.04 LINK ZN ZN A 502 O5 CIT A 503 1555 1555 2.21 LINK ZN ZN A 502 O HOH A 505 1555 1555 1.92 SITE 1 AC1 6 HIS A 20 ASP A 22 GLU A 123 ZN A 502 SITE 2 AC1 6 GOL A 504 HOH A 505 SITE 1 AC2 6 GLU A 123 HIS A 191 HIS A 212 ZN A 501 SITE 2 AC2 6 CIT A 503 HOH A 505 SITE 1 AC3 19 HIS A 150 ASN A 151 HIS A 191 HIS A 212 SITE 2 AC3 19 ARG A 223 LYS A 247 PHE A 248 ASP A 320 SITE 3 AC3 19 GLY A 323 THR A 324 ZN A 502 GOL A 504 SITE 4 AC3 19 HOH A 505 HOH A 541 HOH A 764 HOH A 779 SITE 5 AC3 19 HOH A 781 HOH A 887 HOH A 902 SITE 1 AC4 10 ASP A 22 TYR A 68 GLU A 123 GLY A 323 SITE 2 AC4 10 ZN A 501 CIT A 503 HOH A 505 HOH A 764 SITE 3 AC4 10 HOH A 887 HOH A 903 CRYST1 97.287 97.287 104.411 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010279 0.005935 0.000000 0.00000 SCALE2 0.000000 0.011869 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009578 0.00000