data_3IUO # _entry.id 3IUO # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.287 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 3IUO RCSB RCSB054886 WWPDB D_1000054886 # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id APC90268.1 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.entry_id 3IUO _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2009-08-31 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Stein, A.J.' 1 'Sather, A.' 2 'Duggan, E.' 3 'Moy, S.' 4 'Joachimiak, A.' 5 'Midwest Center for Structural Genomics (MCSG)' 6 # _citation.id primary _citation.title 'The Crystal Structure of the C-terminal domain of the ATP-dependent DNA helicase RecQ from Porphyromonas gingivalis to 1.6A' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Stein, A.J.' 1 primary 'Sather, A.' 2 primary 'Duggan, E.' 3 primary 'Moy, S.' 4 primary 'Joachimiak, A.' 5 # _cell.entry_id 3IUO _cell.length_a 98.326 _cell.length_b 98.326 _cell.length_c 72.526 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 120.000 _cell.pdbx_unique_axis ? _cell.Z_PDB 18 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.Int_Tables_number 146 _symmetry.entry_id 3IUO _symmetry.space_group_name_H-M 'H 3' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'ATP-dependent DNA helicase RecQ' 14530.452 2 ? ? 'residues 604-725' ? 2 non-polymer syn 'SODIUM ION' 22.990 1 ? ? ? ? 3 non-polymer syn 'CHLORIDE ION' 35.453 1 ? ? ? ? 4 water nat water 18.015 182 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;ENEIERPED(MSE)RVRTLANKSK(MSE)KVSIVQQIDRKVALDDIAVSHGLDFPELLSEVETIVYSGTRINIDYFINEV (MSE)DEDHLEDIFEYFKESTTDSLEEA(MSE)QELGKDYSEEEIRLVRIKFLSE(MSE)AN ; _entity_poly.pdbx_seq_one_letter_code_can ;ENEIERPEDMRVRTLANKSKMKVSIVQQIDRKVALDDIAVSHGLDFPELLSEVETIVYSGTRINIDYFINEVMDEDHLED IFEYFKESTTDSLEEAMQELGKDYSEEEIRLVRIKFLSEMAN ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier APC90268.1 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLU n 1 2 ASN n 1 3 GLU n 1 4 ILE n 1 5 GLU n 1 6 ARG n 1 7 PRO n 1 8 GLU n 1 9 ASP n 1 10 MSE n 1 11 ARG n 1 12 VAL n 1 13 ARG n 1 14 THR n 1 15 LEU n 1 16 ALA n 1 17 ASN n 1 18 LYS n 1 19 SER n 1 20 LYS n 1 21 MSE n 1 22 LYS n 1 23 VAL n 1 24 SER n 1 25 ILE n 1 26 VAL n 1 27 GLN n 1 28 GLN n 1 29 ILE n 1 30 ASP n 1 31 ARG n 1 32 LYS n 1 33 VAL n 1 34 ALA n 1 35 LEU n 1 36 ASP n 1 37 ASP n 1 38 ILE n 1 39 ALA n 1 40 VAL n 1 41 SER n 1 42 HIS n 1 43 GLY n 1 44 LEU n 1 45 ASP n 1 46 PHE n 1 47 PRO n 1 48 GLU n 1 49 LEU n 1 50 LEU n 1 51 SER n 1 52 GLU n 1 53 VAL n 1 54 GLU n 1 55 THR n 1 56 ILE n 1 57 VAL n 1 58 TYR n 1 59 SER n 1 60 GLY n 1 61 THR n 1 62 ARG n 1 63 ILE n 1 64 ASN n 1 65 ILE n 1 66 ASP n 1 67 TYR n 1 68 PHE n 1 69 ILE n 1 70 ASN n 1 71 GLU n 1 72 VAL n 1 73 MSE n 1 74 ASP n 1 75 GLU n 1 76 ASP n 1 77 HIS n 1 78 LEU n 1 79 GLU n 1 80 ASP n 1 81 ILE n 1 82 PHE n 1 83 GLU n 1 84 TYR n 1 85 PHE n 1 86 LYS n 1 87 GLU n 1 88 SER n 1 89 THR n 1 90 THR n 1 91 ASP n 1 92 SER n 1 93 LEU n 1 94 GLU n 1 95 GLU n 1 96 ALA n 1 97 MSE n 1 98 GLN n 1 99 GLU n 1 100 LEU n 1 101 GLY n 1 102 LYS n 1 103 ASP n 1 104 TYR n 1 105 SER n 1 106 GLU n 1 107 GLU n 1 108 GLU n 1 109 ILE n 1 110 ARG n 1 111 LEU n 1 112 VAL n 1 113 ARG n 1 114 ILE n 1 115 LYS n 1 116 PHE n 1 117 LEU n 1 118 SER n 1 119 GLU n 1 120 MSE n 1 121 ALA n 1 122 ASN n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name 'Bacteroides gingivalis' _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'PG0684, PG_0416, recQ-1' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain W83 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Porphyromonas gingivalis' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 837 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pMCSG8 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q7MX11_PORGI _struct_ref.pdbx_db_accession Q7MX11 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;ENEIERPEDMRVRTLANKSKMKVSIVQQIDRKVALDDIAVSHGLDFPELLSEVETIVYSGTRINIDYFINEVMDEDHLED IFEYFKESTTDSLEEAMQELGKDYSEEEIRLVRIKFLSEMAN ; _struct_ref.pdbx_align_begin 604 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3IUO A 1 ? 122 ? Q7MX11 604 ? 725 ? 604 725 2 1 3IUO B 1 ? 122 ? Q7MX11 604 ? 725 ? 604 725 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CL non-polymer . 'CHLORIDE ION' ? 'Cl -1' 35.453 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 NA non-polymer . 'SODIUM ION' ? 'Na 1' 22.990 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.entry_id 3IUO _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_percent_sol 48.0 _exptl_crystal.density_Matthews 2.26 _exptl_crystal.density_meas ? _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH 7.0 _exptl_crystal_grow.temp 277 _exptl_crystal_grow.pdbx_details '35% PEG 4000, pH 7.0, VAPOR DIFFUSION, SITTING DROP, temperature 277K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.pdbx_collection_date 2009-06-30 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator 'Double crystal' _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9794 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 19-ID' _diffrn_source.pdbx_wavelength_list 0.9794 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 19-ID # _reflns.entry_id 3IUO _reflns.d_resolution_high 1.600 _reflns.d_resolution_low 50.000 _reflns.number_obs 34286 _reflns.pdbx_Rmerge_I_obs 0.080 _reflns.pdbx_netI_over_sigmaI 14.200 _reflns.pdbx_chi_squared 3.351 _reflns.pdbx_redundancy 4.000 _reflns.percent_possible_obs 99.000 _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.number_all ? _reflns.pdbx_Rsym_value ? _reflns.B_iso_Wilson_estimate ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 1.60 1.66 ? ? ? 0.493 ? ? 0.978 4.10 ? 3504 100.00 1 1 1.66 1.72 ? ? ? 0.334 ? ? 0.971 4.10 ? 3448 100.00 2 1 1.72 1.80 ? ? ? 0.228 ? ? 1.032 4.10 ? 3445 100.00 3 1 1.80 1.90 ? ? ? 0.171 ? ? 1.279 4.10 ? 3456 100.00 4 1 1.90 2.02 ? ? ? 0.113 ? ? 1.739 4.10 ? 3486 100.00 5 1 2.02 2.17 ? ? ? 0.087 ? ? 2.514 4.10 ? 3421 99.90 6 1 2.17 2.39 ? ? ? 0.078 ? ? 3.451 4.10 ? 3492 99.80 7 1 2.39 2.74 ? ? ? 0.077 ? ? 5.022 4.10 ? 3436 99.40 8 1 2.74 3.45 ? ? ? 0.069 ? ? 6.582 4.00 ? 3403 98.30 9 1 3.45 50.00 ? ? ? 0.073 ? ? 11.664 3.70 ? 3195 92.20 10 1 # _refine.entry_id 3IUO _refine.ls_d_res_high 1.600 _refine.ls_d_res_low 24.070 _refine.pdbx_ls_sigma_F 0.00 _refine.ls_percent_reflns_obs 98.840 _refine.ls_number_reflns_obs 34256 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details ;HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS U VALUES : RESIDUAL ONLY ; _refine.ls_R_factor_obs 0.190 _refine.ls_R_factor_R_work 0.188 _refine.ls_wR_factor_R_work 0.198 _refine.ls_R_factor_R_free 0.221 _refine.ls_wR_factor_R_free 0.232 _refine.ls_percent_reflns_R_free 5.000 _refine.ls_number_reflns_R_free 1726 _refine.B_iso_mean 12.889 _refine.aniso_B[1][1] -0.010 _refine.aniso_B[2][2] -0.010 _refine.aniso_B[3][3] 0.020 _refine.aniso_B[1][2] -0.010 _refine.aniso_B[1][3] 0.000 _refine.aniso_B[2][3] 0.000 _refine.correlation_coeff_Fo_to_Fc 0.960 _refine.correlation_coeff_Fo_to_Fc_free 0.945 _refine.pdbx_overall_ESU_R 0.088 _refine.pdbx_overall_ESU_R_Free 0.089 _refine.overall_SU_ML 0.054 _refine.overall_SU_B 3.313 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.400 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.pdbx_method_to_determine_struct ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_ls_sigma_I ? _refine.ls_number_reflns_all ? _refine.ls_R_factor_all ? _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_starting_model ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_isotropic_thermal_model ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1789 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 2 _refine_hist.number_atoms_solvent 182 _refine_hist.number_atoms_total 1973 _refine_hist.d_res_high 1.600 _refine_hist.d_res_low 24.070 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 1843 0.012 0.022 ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 2492 1.336 1.976 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 231 4.538 5.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 94 36.708 25.319 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 360 13.605 15.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 11 13.533 15.000 ? 'X-RAY DIFFRACTION' ? r_chiral_restr 292 0.093 0.200 ? 'X-RAY DIFFRACTION' ? r_gen_planes_refined 1365 0.006 0.020 ? 'X-RAY DIFFRACTION' ? r_mcbond_it 1117 0.727 1.500 ? 'X-RAY DIFFRACTION' ? r_mcangle_it 1822 1.256 2.000 ? 'X-RAY DIFFRACTION' ? r_scbond_it 726 2.490 3.000 ? 'X-RAY DIFFRACTION' ? r_scangle_it 664 3.840 4.500 ? 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_low _refine_ls_shell.d_res_high _refine_ls_shell.number_reflns_all _refine_ls_shell.percent_reflns_obs _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.number_reflns_R_free _refine_ls_shell.R_factor_R_free _refine_ls_shell.number_reflns_obs _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.R_factor_all _refine_ls_shell.pdbx_refine_id 20 1.639 1.598 2554 98.669 2387 0.266 133 0.312 . . . . . 'X-RAY DIFFRACTION' 20 1.684 1.639 2495 99.840 2393 0.249 98 0.266 . . . . . 'X-RAY DIFFRACTION' 20 1.732 1.684 2448 99.877 2313 0.219 132 0.253 . . . . . 'X-RAY DIFFRACTION' 20 1.785 1.732 2326 99.914 2214 0.212 110 0.243 . . . . . 'X-RAY DIFFRACTION' 20 1.843 1.785 2258 99.779 2129 0.189 124 0.238 . . . . . 'X-RAY DIFFRACTION' 20 1.908 1.843 2226 99.955 2125 0.165 100 0.197 . . . . . 'X-RAY DIFFRACTION' 20 1.979 1.908 2109 100.000 2001 0.160 108 0.174 . . . . . 'X-RAY DIFFRACTION' 20 2.060 1.979 2070 99.952 1962 0.165 107 0.196 . . . . . 'X-RAY DIFFRACTION' 20 2.150 2.060 1966 99.949 1863 0.161 102 0.205 . . . . . 'X-RAY DIFFRACTION' 20 2.254 2.150 1880 99.894 1798 0.165 80 0.210 . . . . . 'X-RAY DIFFRACTION' 20 2.375 2.254 1775 99.662 1670 0.179 99 0.228 . . . . . 'X-RAY DIFFRACTION' 20 2.518 2.375 1686 99.585 1588 0.190 91 0.202 . . . . . 'X-RAY DIFFRACTION' 20 2.690 2.518 1609 99.192 1526 0.204 70 0.219 . . . . . 'X-RAY DIFFRACTION' 20 2.902 2.690 1480 98.784 1379 0.206 83 0.236 . . . . . 'X-RAY DIFFRACTION' 20 3.174 2.902 1363 98.533 1263 0.192 80 0.236 . . . . . 'X-RAY DIFFRACTION' 20 3.541 3.174 1235 97.571 1138 0.185 67 0.213 . . . . . 'X-RAY DIFFRACTION' 20 4.075 3.541 1099 97.270 1013 0.170 56 0.167 . . . . . 'X-RAY DIFFRACTION' 20 4.955 4.075 918 95.643 830 0.167 48 0.214 . . . . . 'X-RAY DIFFRACTION' 20 6.863 4.955 737 95.929 677 0.227 30 0.291 . . . . . 'X-RAY DIFFRACTION' 20 24.071 6.863 424 63.443 261 0.235 8 0.475 . . . . . 'X-RAY DIFFRACTION' # _struct.entry_id 3IUO _struct.title 'The Crystal Structure of the C-terminal domain of the ATP-dependent DNA helicase RecQ from Porphyromonas gingivalis to 1.6A' _struct.pdbx_descriptor 'ATP-dependent DNA helicase RecQ' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3IUO _struct_keywords.pdbx_keywords HYDROLASE _struct_keywords.text ;ATP-dependent, helicase, RecQ, C-terminal, porphyromonas, gingivalis, PSI, MCSG, Structural Genomics, Midwest Center for Structural Genomics, Protein Structure Initiative, ATP-binding, Hydrolase, Nucleotide-binding ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 4 ? F N N 4 ? # _struct_biol.id 1 _struct_biol.details 'authors state that biological unit is same as asymmetric unit.' # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 THR A 14 ? ARG A 31 ? THR A 617 ARG A 634 1 ? 18 HELX_P HELX_P2 2 ALA A 34 ? HIS A 42 ? ALA A 637 HIS A 645 1 ? 9 HELX_P HELX_P3 3 ASP A 45 ? SER A 59 ? ASP A 648 SER A 662 1 ? 15 HELX_P HELX_P4 4 ILE A 65 ? MSE A 73 ? ILE A 668 MSE A 676 1 ? 9 HELX_P HELX_P5 5 ASP A 74 ? SER A 88 ? ASP A 677 SER A 691 1 ? 15 HELX_P HELX_P6 6 SER A 92 ? GLY A 101 ? SER A 695 GLY A 704 1 ? 10 HELX_P HELX_P7 7 SER A 105 ? MSE A 120 ? SER A 708 MSE A 723 1 ? 16 HELX_P HELX_P8 8 THR B 14 ? ARG B 31 ? THR B 617 ARG B 634 1 ? 18 HELX_P HELX_P9 9 ALA B 34 ? HIS B 42 ? ALA B 637 HIS B 645 1 ? 9 HELX_P HELX_P10 10 ASP B 45 ? SER B 59 ? ASP B 648 SER B 662 1 ? 15 HELX_P HELX_P11 11 ILE B 65 ? MSE B 73 ? ILE B 668 MSE B 676 1 ? 9 HELX_P HELX_P12 12 ASP B 74 ? SER B 88 ? ASP B 677 SER B 691 1 ? 15 HELX_P HELX_P13 13 SER B 92 ? GLY B 101 ? SER B 695 GLY B 704 1 ? 10 HELX_P HELX_P14 14 SER B 105 ? ASN B 122 ? SER B 708 ASN B 725 1 ? 18 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? A LYS 20 C ? ? ? 1_555 A MSE 21 N ? ? A LYS 623 A MSE 624 1_555 ? ? ? ? ? ? ? 1.330 ? covale2 covale ? ? A MSE 21 C ? ? ? 1_555 A LYS 22 N ? ? A MSE 624 A LYS 625 1_555 ? ? ? ? ? ? ? 1.325 ? covale3 covale ? ? A VAL 72 C ? ? ? 1_555 A MSE 73 N ? ? A VAL 675 A MSE 676 1_555 ? ? ? ? ? ? ? 1.332 ? covale4 covale ? ? A MSE 73 C ? ? ? 1_555 A ASP 74 N ? ? A MSE 676 A ASP 677 1_555 ? ? ? ? ? ? ? 1.328 ? covale5 covale ? ? A ALA 96 C ? ? ? 1_555 A MSE 97 N ? ? A ALA 699 A MSE 700 1_555 ? ? ? ? ? ? ? 1.327 ? covale6 covale ? ? A MSE 97 C ? ? ? 1_555 A GLN 98 N ? ? A MSE 700 A GLN 701 1_555 ? ? ? ? ? ? ? 1.331 ? covale7 covale ? ? A GLU 119 C ? ? ? 1_555 A MSE 120 N ? ? A GLU 722 A MSE 723 1_555 ? ? ? ? ? ? ? 1.328 ? covale8 covale ? ? B LYS 20 C ? ? ? 1_555 B MSE 21 N ? ? B LYS 623 B MSE 624 1_555 ? ? ? ? ? ? ? 1.332 ? covale9 covale ? ? B MSE 21 C ? ? ? 1_555 B LYS 22 N ? ? B MSE 624 B LYS 625 1_555 ? ? ? ? ? ? ? 1.331 ? covale10 covale ? ? B VAL 72 C ? ? ? 1_555 B MSE 73 N ? ? B VAL 675 B MSE 676 1_555 ? ? ? ? ? ? ? 1.324 ? covale11 covale ? ? B MSE 73 C ? ? ? 1_555 B ASP 74 N ? ? B MSE 676 B ASP 677 1_555 ? ? ? ? ? ? ? 1.327 ? covale12 covale ? ? B ALA 96 C ? ? ? 1_555 B MSE 97 N ? ? B ALA 699 B MSE 700 1_555 ? ? ? ? ? ? ? 1.328 ? covale13 covale ? ? B MSE 97 C ? ? ? 1_555 B GLN 98 N ? ? B MSE 700 B GLN 701 1_555 ? ? ? ? ? ? ? 1.336 ? covale14 covale ? ? B GLU 119 C ? ? ? 1_555 B MSE 120 N ? ? B GLU 722 B MSE 723 1_555 ? ? ? ? ? ? ? 1.329 ? covale15 covale ? ? B MSE 120 C ? ? ? 1_555 B ALA 121 N ? ? B MSE 723 B ALA 724 1_555 ? ? ? ? ? ? ? 1.327 ? metalc1 metalc ? ? A ASP 103 O ? ? ? 1_555 C NA . NA ? ? A ASP 706 A NA 1 1_555 ? ? ? ? ? ? ? 2.854 ? metalc2 metalc ? ? A GLU 108 OE1 ? ? ? 1_555 C NA . NA ? ? A GLU 711 A NA 1 1_555 ? ? ? ? ? ? ? 2.677 ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 5 'BINDING SITE FOR RESIDUE NA A 1' AC2 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE CL B 1' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 5 LEU A 15 ? LEU A 618 . ? 2_555 ? 2 AC1 5 ASP A 103 ? ASP A 706 . ? 1_555 ? 3 AC1 5 TYR A 104 ? TYR A 707 . ? 1_555 ? 4 AC1 5 GLU A 108 ? GLU A 711 . ? 1_555 ? 5 AC1 5 HOH F . ? HOH B 9 . ? 9_554 ? 6 AC2 4 TYR A 58 ? TYR A 661 . ? 1_555 ? 7 AC2 4 HOH F . ? HOH B 39 . ? 1_555 ? 8 AC2 4 THR B 89 ? THR B 692 . ? 1_555 ? 9 AC2 4 THR B 90 ? THR B 693 . ? 1_555 ? # _atom_sites.entry_id 3IUO _atom_sites.fract_transf_matrix[1][1] 0.010170 _atom_sites.fract_transf_matrix[1][2] 0.005872 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.011744 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.013788 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C CL N NA O SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLU 1 604 ? ? ? A . n A 1 2 ASN 2 605 ? ? ? A . n A 1 3 GLU 3 606 ? ? ? A . n A 1 4 ILE 4 607 ? ? ? A . n A 1 5 GLU 5 608 ? ? ? A . n A 1 6 ARG 6 609 ? ? ? A . n A 1 7 PRO 7 610 ? ? ? A . n A 1 8 GLU 8 611 ? ? ? A . n A 1 9 ASP 9 612 ? ? ? A . n A 1 10 MSE 10 613 ? ? ? A . n A 1 11 ARG 11 614 614 ARG ARG A . n A 1 12 VAL 12 615 615 VAL VAL A . n A 1 13 ARG 13 616 616 ARG ARG A . n A 1 14 THR 14 617 617 THR THR A . n A 1 15 LEU 15 618 618 LEU LEU A . n A 1 16 ALA 16 619 619 ALA ALA A . n A 1 17 ASN 17 620 620 ASN ASN A . n A 1 18 LYS 18 621 621 LYS LYS A . n A 1 19 SER 19 622 622 SER SER A . n A 1 20 LYS 20 623 623 LYS LYS A . n A 1 21 MSE 21 624 624 MSE MSE A . n A 1 22 LYS 22 625 625 LYS LYS A . n A 1 23 VAL 23 626 626 VAL VAL A . n A 1 24 SER 24 627 627 SER SER A . n A 1 25 ILE 25 628 628 ILE ILE A . n A 1 26 VAL 26 629 629 VAL VAL A . n A 1 27 GLN 27 630 630 GLN GLN A . n A 1 28 GLN 28 631 631 GLN GLN A . n A 1 29 ILE 29 632 632 ILE ILE A . n A 1 30 ASP 30 633 633 ASP ASP A . n A 1 31 ARG 31 634 634 ARG ARG A . n A 1 32 LYS 32 635 635 LYS LYS A . n A 1 33 VAL 33 636 636 VAL VAL A . n A 1 34 ALA 34 637 637 ALA ALA A . n A 1 35 LEU 35 638 638 LEU LEU A . n A 1 36 ASP 36 639 639 ASP ASP A . n A 1 37 ASP 37 640 640 ASP ASP A . n A 1 38 ILE 38 641 641 ILE ILE A . n A 1 39 ALA 39 642 642 ALA ALA A . n A 1 40 VAL 40 643 643 VAL VAL A . n A 1 41 SER 41 644 644 SER SER A . n A 1 42 HIS 42 645 645 HIS HIS A . n A 1 43 GLY 43 646 646 GLY GLY A . n A 1 44 LEU 44 647 647 LEU LEU A . n A 1 45 ASP 45 648 648 ASP ASP A . n A 1 46 PHE 46 649 649 PHE PHE A . n A 1 47 PRO 47 650 650 PRO PRO A . n A 1 48 GLU 48 651 651 GLU GLU A . n A 1 49 LEU 49 652 652 LEU LEU A . n A 1 50 LEU 50 653 653 LEU LEU A . n A 1 51 SER 51 654 654 SER SER A . n A 1 52 GLU 52 655 655 GLU GLU A . n A 1 53 VAL 53 656 656 VAL VAL A . n A 1 54 GLU 54 657 657 GLU GLU A . n A 1 55 THR 55 658 658 THR THR A . n A 1 56 ILE 56 659 659 ILE ILE A . n A 1 57 VAL 57 660 660 VAL VAL A . n A 1 58 TYR 58 661 661 TYR TYR A . n A 1 59 SER 59 662 662 SER SER A . n A 1 60 GLY 60 663 663 GLY GLY A . n A 1 61 THR 61 664 664 THR THR A . n A 1 62 ARG 62 665 665 ARG ARG A . n A 1 63 ILE 63 666 666 ILE ILE A . n A 1 64 ASN 64 667 667 ASN ASN A . n A 1 65 ILE 65 668 668 ILE ILE A . n A 1 66 ASP 66 669 669 ASP ASP A . n A 1 67 TYR 67 670 670 TYR TYR A . n A 1 68 PHE 68 671 671 PHE PHE A . n A 1 69 ILE 69 672 672 ILE ILE A . n A 1 70 ASN 70 673 673 ASN ASN A . n A 1 71 GLU 71 674 674 GLU GLU A . n A 1 72 VAL 72 675 675 VAL VAL A . n A 1 73 MSE 73 676 676 MSE MSE A . n A 1 74 ASP 74 677 677 ASP ASP A . n A 1 75 GLU 75 678 678 GLU GLU A . n A 1 76 ASP 76 679 679 ASP ASP A . n A 1 77 HIS 77 680 680 HIS HIS A . n A 1 78 LEU 78 681 681 LEU LEU A . n A 1 79 GLU 79 682 682 GLU GLU A . n A 1 80 ASP 80 683 683 ASP ASP A . n A 1 81 ILE 81 684 684 ILE ILE A . n A 1 82 PHE 82 685 685 PHE PHE A . n A 1 83 GLU 83 686 686 GLU GLU A . n A 1 84 TYR 84 687 687 TYR TYR A . n A 1 85 PHE 85 688 688 PHE PHE A . n A 1 86 LYS 86 689 689 LYS LYS A . n A 1 87 GLU 87 690 690 GLU GLU A . n A 1 88 SER 88 691 691 SER SER A . n A 1 89 THR 89 692 692 THR THR A . n A 1 90 THR 90 693 693 THR THR A . n A 1 91 ASP 91 694 694 ASP ASP A . n A 1 92 SER 92 695 695 SER SER A . n A 1 93 LEU 93 696 696 LEU LEU A . n A 1 94 GLU 94 697 697 GLU GLU A . n A 1 95 GLU 95 698 698 GLU GLU A . n A 1 96 ALA 96 699 699 ALA ALA A . n A 1 97 MSE 97 700 700 MSE MSE A . n A 1 98 GLN 98 701 701 GLN GLN A . n A 1 99 GLU 99 702 702 GLU GLU A . n A 1 100 LEU 100 703 703 LEU LEU A . n A 1 101 GLY 101 704 704 GLY GLY A . n A 1 102 LYS 102 705 705 LYS LYS A . n A 1 103 ASP 103 706 706 ASP ASP A . n A 1 104 TYR 104 707 707 TYR TYR A . n A 1 105 SER 105 708 708 SER SER A . n A 1 106 GLU 106 709 709 GLU GLU A . n A 1 107 GLU 107 710 710 GLU GLU A . n A 1 108 GLU 108 711 711 GLU GLU A . n A 1 109 ILE 109 712 712 ILE ILE A . n A 1 110 ARG 110 713 713 ARG ARG A . n A 1 111 LEU 111 714 714 LEU LEU A . n A 1 112 VAL 112 715 715 VAL VAL A . n A 1 113 ARG 113 716 716 ARG ARG A . n A 1 114 ILE 114 717 717 ILE ILE A . n A 1 115 LYS 115 718 718 LYS LYS A . n A 1 116 PHE 116 719 719 PHE PHE A . n A 1 117 LEU 117 720 720 LEU LEU A . n A 1 118 SER 118 721 721 SER SER A . n A 1 119 GLU 119 722 722 GLU GLU A . n A 1 120 MSE 120 723 723 MSE MSE A . n A 1 121 ALA 121 724 ? ? ? A . n A 1 122 ASN 122 725 ? ? ? A . n B 1 1 GLU 1 604 ? ? ? B . n B 1 2 ASN 2 605 ? ? ? B . n B 1 3 GLU 3 606 ? ? ? B . n B 1 4 ILE 4 607 ? ? ? B . n B 1 5 GLU 5 608 ? ? ? B . n B 1 6 ARG 6 609 ? ? ? B . n B 1 7 PRO 7 610 ? ? ? B . n B 1 8 GLU 8 611 ? ? ? B . n B 1 9 ASP 9 612 ? ? ? B . n B 1 10 MSE 10 613 ? ? ? B . n B 1 11 ARG 11 614 ? ? ? B . n B 1 12 VAL 12 615 615 VAL VAL B . n B 1 13 ARG 13 616 616 ARG ARG B . n B 1 14 THR 14 617 617 THR THR B . n B 1 15 LEU 15 618 618 LEU LEU B . n B 1 16 ALA 16 619 619 ALA ALA B . n B 1 17 ASN 17 620 620 ASN ASN B . n B 1 18 LYS 18 621 621 LYS LYS B . n B 1 19 SER 19 622 622 SER SER B . n B 1 20 LYS 20 623 623 LYS LYS B . n B 1 21 MSE 21 624 624 MSE MSE B . n B 1 22 LYS 22 625 625 LYS LYS B . n B 1 23 VAL 23 626 626 VAL VAL B . n B 1 24 SER 24 627 627 SER SER B . n B 1 25 ILE 25 628 628 ILE ILE B . n B 1 26 VAL 26 629 629 VAL VAL B . n B 1 27 GLN 27 630 630 GLN GLN B . n B 1 28 GLN 28 631 631 GLN GLN B . n B 1 29 ILE 29 632 632 ILE ILE B . n B 1 30 ASP 30 633 633 ASP ASP B . n B 1 31 ARG 31 634 634 ARG ARG B . n B 1 32 LYS 32 635 635 LYS LYS B . n B 1 33 VAL 33 636 636 VAL VAL B . n B 1 34 ALA 34 637 637 ALA ALA B . n B 1 35 LEU 35 638 638 LEU LEU B . n B 1 36 ASP 36 639 639 ASP ASP B . n B 1 37 ASP 37 640 640 ASP ASP B . n B 1 38 ILE 38 641 641 ILE ILE B . n B 1 39 ALA 39 642 642 ALA ALA B . n B 1 40 VAL 40 643 643 VAL VAL B . n B 1 41 SER 41 644 644 SER SER B . n B 1 42 HIS 42 645 645 HIS HIS B . n B 1 43 GLY 43 646 646 GLY GLY B . n B 1 44 LEU 44 647 647 LEU LEU B . n B 1 45 ASP 45 648 648 ASP ASP B . n B 1 46 PHE 46 649 649 PHE PHE B . n B 1 47 PRO 47 650 650 PRO PRO B . n B 1 48 GLU 48 651 651 GLU GLU B . n B 1 49 LEU 49 652 652 LEU LEU B . n B 1 50 LEU 50 653 653 LEU LEU B . n B 1 51 SER 51 654 654 SER SER B . n B 1 52 GLU 52 655 655 GLU GLU B . n B 1 53 VAL 53 656 656 VAL VAL B . n B 1 54 GLU 54 657 657 GLU GLU B . n B 1 55 THR 55 658 658 THR THR B . n B 1 56 ILE 56 659 659 ILE ILE B . n B 1 57 VAL 57 660 660 VAL VAL B . n B 1 58 TYR 58 661 661 TYR TYR B . n B 1 59 SER 59 662 662 SER SER B . n B 1 60 GLY 60 663 663 GLY GLY B . n B 1 61 THR 61 664 664 THR THR B . n B 1 62 ARG 62 665 665 ARG ARG B . n B 1 63 ILE 63 666 666 ILE ILE B . n B 1 64 ASN 64 667 667 ASN ASN B . n B 1 65 ILE 65 668 668 ILE ILE B . n B 1 66 ASP 66 669 669 ASP ASP B . n B 1 67 TYR 67 670 670 TYR TYR B . n B 1 68 PHE 68 671 671 PHE PHE B . n B 1 69 ILE 69 672 672 ILE ILE B . n B 1 70 ASN 70 673 673 ASN ASN B . n B 1 71 GLU 71 674 674 GLU GLU B . n B 1 72 VAL 72 675 675 VAL VAL B . n B 1 73 MSE 73 676 676 MSE MSE B . n B 1 74 ASP 74 677 677 ASP ASP B . n B 1 75 GLU 75 678 678 GLU GLU B . n B 1 76 ASP 76 679 679 ASP ASP B . n B 1 77 HIS 77 680 680 HIS HIS B . n B 1 78 LEU 78 681 681 LEU LEU B . n B 1 79 GLU 79 682 682 GLU GLU B . n B 1 80 ASP 80 683 683 ASP ASP B . n B 1 81 ILE 81 684 684 ILE ILE B . n B 1 82 PHE 82 685 685 PHE PHE B . n B 1 83 GLU 83 686 686 GLU GLU B . n B 1 84 TYR 84 687 687 TYR TYR B . n B 1 85 PHE 85 688 688 PHE PHE B . n B 1 86 LYS 86 689 689 LYS LYS B . n B 1 87 GLU 87 690 690 GLU GLU B . n B 1 88 SER 88 691 691 SER SER B . n B 1 89 THR 89 692 692 THR THR B . n B 1 90 THR 90 693 693 THR THR B . n B 1 91 ASP 91 694 694 ASP ASP B . n B 1 92 SER 92 695 695 SER SER B . n B 1 93 LEU 93 696 696 LEU LEU B . n B 1 94 GLU 94 697 697 GLU GLU B . n B 1 95 GLU 95 698 698 GLU GLU B . n B 1 96 ALA 96 699 699 ALA ALA B . n B 1 97 MSE 97 700 700 MSE MSE B . n B 1 98 GLN 98 701 701 GLN GLN B . n B 1 99 GLU 99 702 702 GLU GLU B . n B 1 100 LEU 100 703 703 LEU LEU B . n B 1 101 GLY 101 704 704 GLY GLY B . n B 1 102 LYS 102 705 705 LYS LYS B . n B 1 103 ASP 103 706 706 ASP ASP B . n B 1 104 TYR 104 707 707 TYR TYR B . n B 1 105 SER 105 708 708 SER SER B . n B 1 106 GLU 106 709 709 GLU GLU B . n B 1 107 GLU 107 710 710 GLU GLU B . n B 1 108 GLU 108 711 711 GLU GLU B . n B 1 109 ILE 109 712 712 ILE ILE B . n B 1 110 ARG 110 713 713 ARG ARG B . n B 1 111 LEU 111 714 714 LEU LEU B . n B 1 112 VAL 112 715 715 VAL VAL B . n B 1 113 ARG 113 716 716 ARG ARG B . n B 1 114 ILE 114 717 717 ILE ILE B . n B 1 115 LYS 115 718 718 LYS LYS B . n B 1 116 PHE 116 719 719 PHE PHE B . n B 1 117 LEU 117 720 720 LEU LEU B . n B 1 118 SER 118 721 721 SER SER B . n B 1 119 GLU 119 722 722 GLU GLU B . n B 1 120 MSE 120 723 723 MSE MSE B . n B 1 121 ALA 121 724 724 ALA ALA B . n B 1 122 ASN 122 725 725 ASN ASN B . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'Midwest Center for Structural Genomics' _pdbx_SG_project.initial_of_center MCSG # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NA 1 1 1 NA NA A . D 3 CL 1 1 1 CL CL B . E 4 HOH 1 2 2 HOH HOH A . E 4 HOH 2 3 3 HOH HOH A . E 4 HOH 3 5 5 HOH HOH A . E 4 HOH 4 6 6 HOH HOH A . E 4 HOH 5 8 8 HOH HOH A . E 4 HOH 6 10 10 HOH HOH A . E 4 HOH 7 11 11 HOH HOH A . E 4 HOH 8 12 12 HOH HOH A . E 4 HOH 9 13 13 HOH HOH A . E 4 HOH 10 14 14 HOH HOH A . E 4 HOH 11 15 15 HOH HOH A . E 4 HOH 12 18 18 HOH HOH A . E 4 HOH 13 19 19 HOH HOH A . E 4 HOH 14 21 21 HOH HOH A . E 4 HOH 15 24 24 HOH HOH A . E 4 HOH 16 25 25 HOH HOH A . E 4 HOH 17 28 28 HOH HOH A . E 4 HOH 18 29 29 HOH HOH A . E 4 HOH 19 30 30 HOH HOH A . E 4 HOH 20 35 35 HOH HOH A . E 4 HOH 21 38 38 HOH HOH A . E 4 HOH 22 40 40 HOH HOH A . E 4 HOH 23 41 41 HOH HOH A . E 4 HOH 24 42 42 HOH HOH A . E 4 HOH 25 44 44 HOH HOH A . E 4 HOH 26 46 46 HOH HOH A . E 4 HOH 27 47 47 HOH HOH A . E 4 HOH 28 49 49 HOH HOH A . E 4 HOH 29 50 50 HOH HOH A . E 4 HOH 30 51 51 HOH HOH A . E 4 HOH 31 52 52 HOH HOH A . E 4 HOH 32 53 53 HOH HOH A . E 4 HOH 33 54 54 HOH HOH A . E 4 HOH 34 56 56 HOH HOH A . E 4 HOH 35 60 60 HOH HOH A . E 4 HOH 36 61 61 HOH HOH A . E 4 HOH 37 63 63 HOH HOH A . E 4 HOH 38 68 68 HOH HOH A . E 4 HOH 39 69 69 HOH HOH A . E 4 HOH 40 70 70 HOH HOH A . E 4 HOH 41 73 73 HOH HOH A . E 4 HOH 42 74 74 HOH HOH A . E 4 HOH 43 76 76 HOH HOH A . E 4 HOH 44 77 77 HOH HOH A . E 4 HOH 45 78 78 HOH HOH A . E 4 HOH 46 81 81 HOH HOH A . E 4 HOH 47 83 83 HOH HOH A . E 4 HOH 48 87 87 HOH HOH A . E 4 HOH 49 91 91 HOH HOH A . E 4 HOH 50 95 95 HOH HOH A . E 4 HOH 51 96 96 HOH HOH A . E 4 HOH 52 99 99 HOH HOH A . E 4 HOH 53 100 100 HOH HOH A . E 4 HOH 54 101 101 HOH HOH A . E 4 HOH 55 102 102 HOH HOH A . E 4 HOH 56 103 103 HOH HOH A . E 4 HOH 57 105 105 HOH HOH A . E 4 HOH 58 108 108 HOH HOH A . E 4 HOH 59 109 109 HOH HOH A . E 4 HOH 60 110 110 HOH HOH A . E 4 HOH 61 111 111 HOH HOH A . E 4 HOH 62 112 112 HOH HOH A . E 4 HOH 63 113 113 HOH HOH A . E 4 HOH 64 115 115 HOH HOH A . E 4 HOH 65 116 116 HOH HOH A . E 4 HOH 66 117 117 HOH HOH A . E 4 HOH 67 118 118 HOH HOH A . E 4 HOH 68 120 120 HOH HOH A . E 4 HOH 69 122 122 HOH HOH A . E 4 HOH 70 123 123 HOH HOH A . E 4 HOH 71 124 124 HOH HOH A . E 4 HOH 72 125 125 HOH HOH A . E 4 HOH 73 126 126 HOH HOH A . E 4 HOH 74 128 128 HOH HOH A . E 4 HOH 75 132 132 HOH HOH A . E 4 HOH 76 133 133 HOH HOH A . E 4 HOH 77 137 137 HOH HOH A . E 4 HOH 78 141 141 HOH HOH A . E 4 HOH 79 147 147 HOH HOH A . E 4 HOH 80 149 149 HOH HOH A . E 4 HOH 81 152 152 HOH HOH A . E 4 HOH 82 153 153 HOH HOH A . E 4 HOH 83 154 154 HOH HOH A . E 4 HOH 84 155 155 HOH HOH A . E 4 HOH 85 156 156 HOH HOH A . E 4 HOH 86 157 157 HOH HOH A . E 4 HOH 87 158 158 HOH HOH A . E 4 HOH 88 159 159 HOH HOH A . E 4 HOH 89 161 161 HOH HOH A . E 4 HOH 90 162 162 HOH HOH A . E 4 HOH 91 175 175 HOH HOH A . E 4 HOH 92 176 176 HOH HOH A . E 4 HOH 93 180 180 HOH HOH A . E 4 HOH 94 181 181 HOH HOH A . E 4 HOH 95 182 182 HOH HOH A . F 4 HOH 1 4 4 HOH HOH B . F 4 HOH 2 7 7 HOH HOH B . F 4 HOH 3 9 9 HOH HOH B . F 4 HOH 4 16 16 HOH HOH B . F 4 HOH 5 17 17 HOH HOH B . F 4 HOH 6 20 20 HOH HOH B . F 4 HOH 7 22 22 HOH HOH B . F 4 HOH 8 23 23 HOH HOH B . F 4 HOH 9 26 26 HOH HOH B . F 4 HOH 10 27 27 HOH HOH B . F 4 HOH 11 31 31 HOH HOH B . F 4 HOH 12 32 32 HOH HOH B . F 4 HOH 13 33 33 HOH HOH B . F 4 HOH 14 34 34 HOH HOH B . F 4 HOH 15 36 36 HOH HOH B . F 4 HOH 16 37 37 HOH HOH B . F 4 HOH 17 39 39 HOH HOH B . F 4 HOH 18 43 43 HOH HOH B . F 4 HOH 19 45 45 HOH HOH B . F 4 HOH 20 48 48 HOH HOH B . F 4 HOH 21 55 55 HOH HOH B . F 4 HOH 22 57 57 HOH HOH B . F 4 HOH 23 58 58 HOH HOH B . F 4 HOH 24 59 59 HOH HOH B . F 4 HOH 25 62 62 HOH HOH B . F 4 HOH 26 64 64 HOH HOH B . F 4 HOH 27 65 65 HOH HOH B . F 4 HOH 28 66 66 HOH HOH B . F 4 HOH 29 67 67 HOH HOH B . F 4 HOH 30 71 71 HOH HOH B . F 4 HOH 31 72 72 HOH HOH B . F 4 HOH 32 75 75 HOH HOH B . F 4 HOH 33 79 79 HOH HOH B . F 4 HOH 34 80 80 HOH HOH B . F 4 HOH 35 82 82 HOH HOH B . F 4 HOH 36 84 84 HOH HOH B . F 4 HOH 37 85 85 HOH HOH B . F 4 HOH 38 86 86 HOH HOH B . F 4 HOH 39 88 88 HOH HOH B . F 4 HOH 40 89 89 HOH HOH B . F 4 HOH 41 90 90 HOH HOH B . F 4 HOH 42 92 92 HOH HOH B . F 4 HOH 43 93 93 HOH HOH B . F 4 HOH 44 94 94 HOH HOH B . F 4 HOH 45 97 97 HOH HOH B . F 4 HOH 46 98 98 HOH HOH B . F 4 HOH 47 104 104 HOH HOH B . F 4 HOH 48 106 106 HOH HOH B . F 4 HOH 49 107 107 HOH HOH B . F 4 HOH 50 114 114 HOH HOH B . F 4 HOH 51 119 119 HOH HOH B . F 4 HOH 52 121 121 HOH HOH B . F 4 HOH 53 127 127 HOH HOH B . F 4 HOH 54 129 129 HOH HOH B . F 4 HOH 55 130 130 HOH HOH B . F 4 HOH 56 131 131 HOH HOH B . F 4 HOH 57 134 134 HOH HOH B . F 4 HOH 58 135 135 HOH HOH B . F 4 HOH 59 136 136 HOH HOH B . F 4 HOH 60 138 138 HOH HOH B . F 4 HOH 61 139 139 HOH HOH B . F 4 HOH 62 140 140 HOH HOH B . F 4 HOH 63 142 142 HOH HOH B . F 4 HOH 64 143 143 HOH HOH B . F 4 HOH 65 144 144 HOH HOH B . F 4 HOH 66 145 145 HOH HOH B . F 4 HOH 67 146 146 HOH HOH B . F 4 HOH 68 148 148 HOH HOH B . F 4 HOH 69 150 150 HOH HOH B . F 4 HOH 70 151 151 HOH HOH B . F 4 HOH 71 160 160 HOH HOH B . F 4 HOH 72 163 163 HOH HOH B . F 4 HOH 73 164 164 HOH HOH B . F 4 HOH 74 165 165 HOH HOH B . F 4 HOH 75 166 166 HOH HOH B . F 4 HOH 76 167 167 HOH HOH B . F 4 HOH 77 168 168 HOH HOH B . F 4 HOH 78 169 169 HOH HOH B . F 4 HOH 79 170 170 HOH HOH B . F 4 HOH 80 171 171 HOH HOH B . F 4 HOH 81 172 172 HOH HOH B . F 4 HOH 82 173 173 HOH HOH B . F 4 HOH 83 174 174 HOH HOH B . F 4 HOH 84 177 177 HOH HOH B . F 4 HOH 85 178 178 HOH HOH B . F 4 HOH 86 179 179 HOH HOH B . F 4 HOH 87 726 1 HOH HOH B . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 21 A MSE 624 ? MET SELENOMETHIONINE 2 A MSE 73 A MSE 676 ? MET SELENOMETHIONINE 3 A MSE 97 A MSE 700 ? MET SELENOMETHIONINE 4 A MSE 120 A MSE 723 ? MET SELENOMETHIONINE 5 B MSE 21 B MSE 624 ? MET SELENOMETHIONINE 6 B MSE 73 B MSE 676 ? MET SELENOMETHIONINE 7 B MSE 97 B MSE 700 ? MET SELENOMETHIONINE 8 B MSE 120 B MSE 723 ? MET SELENOMETHIONINE # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_and_software_defined_assembly PISA dimeric 2 2 software_defined_assembly PISA hexameric 6 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B,C,D,E,F 2 1,2,3 A,B,C,D,E,F # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 1160 ? 1 MORE -23 ? 1 'SSA (A^2)' 12370 ? 2 'ABSA (A^2)' 8090 ? 2 MORE -106 ? 2 'SSA (A^2)' 32490 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_555 -y,x-y,z -0.5000000000 -0.8660254038 0.0000000000 0.0000000000 0.8660254038 -0.5000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 3 'crystal symmetry operation' 3_555 -x+y,-x,z -0.5000000000 0.8660254038 0.0000000000 0.0000000000 -0.8660254038 -0.5000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 # _pdbx_struct_conn_angle.id 1 _pdbx_struct_conn_angle.ptnr1_label_atom_id O _pdbx_struct_conn_angle.ptnr1_label_alt_id ? _pdbx_struct_conn_angle.ptnr1_label_asym_id A _pdbx_struct_conn_angle.ptnr1_label_comp_id ASP _pdbx_struct_conn_angle.ptnr1_label_seq_id 103 _pdbx_struct_conn_angle.ptnr1_auth_atom_id ? _pdbx_struct_conn_angle.ptnr1_auth_asym_id A _pdbx_struct_conn_angle.ptnr1_auth_comp_id ASP _pdbx_struct_conn_angle.ptnr1_auth_seq_id 706 _pdbx_struct_conn_angle.ptnr1_PDB_ins_code ? _pdbx_struct_conn_angle.ptnr1_symmetry 1_555 _pdbx_struct_conn_angle.ptnr2_label_atom_id NA _pdbx_struct_conn_angle.ptnr2_label_alt_id ? _pdbx_struct_conn_angle.ptnr2_label_asym_id C _pdbx_struct_conn_angle.ptnr2_label_comp_id NA _pdbx_struct_conn_angle.ptnr2_label_seq_id . _pdbx_struct_conn_angle.ptnr2_auth_atom_id ? _pdbx_struct_conn_angle.ptnr2_auth_asym_id A _pdbx_struct_conn_angle.ptnr2_auth_comp_id NA _pdbx_struct_conn_angle.ptnr2_auth_seq_id 1 _pdbx_struct_conn_angle.ptnr2_PDB_ins_code ? _pdbx_struct_conn_angle.ptnr2_symmetry 1_555 _pdbx_struct_conn_angle.ptnr3_label_atom_id OE1 _pdbx_struct_conn_angle.ptnr3_label_alt_id ? _pdbx_struct_conn_angle.ptnr3_label_asym_id A _pdbx_struct_conn_angle.ptnr3_label_comp_id GLU _pdbx_struct_conn_angle.ptnr3_label_seq_id 108 _pdbx_struct_conn_angle.ptnr3_auth_atom_id ? _pdbx_struct_conn_angle.ptnr3_auth_asym_id A _pdbx_struct_conn_angle.ptnr3_auth_comp_id GLU _pdbx_struct_conn_angle.ptnr3_auth_seq_id 711 _pdbx_struct_conn_angle.ptnr3_PDB_ins_code ? _pdbx_struct_conn_angle.ptnr3_symmetry 1_555 _pdbx_struct_conn_angle.value 107.4 _pdbx_struct_conn_angle.value_esd ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2009-09-08 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2017-11-01 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Advisory 2 2 'Structure model' 'Version format compliance' 3 3 'Structure model' 'Refinement description' # _pdbx_audit_revision_category.ordinal 1 _pdbx_audit_revision_category.revision_ordinal 3 _pdbx_audit_revision_category.data_content_type 'Structure model' _pdbx_audit_revision_category.category software # loop_ _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.pdbx_refine_id 1 ? refined 11.9823 -13.1681 39.1886 0.1623 0.1578 0.1344 0.0190 0.0035 0.0114 11.2935 3.1493 6.3795 2.8128 -0.0378 0.8780 -0.0050 0.1051 -0.1001 0.6118 0.3085 0.2471 -0.3078 -0.0926 -0.4284 'X-RAY DIFFRACTION' 2 ? refined 17.7480 -8.3196 39.2990 0.1223 0.0981 0.1038 0.0131 0.0311 -0.0266 8.2497 13.7654 9.1782 5.7305 -3.2103 -3.2301 0.0411 0.1325 -0.1736 0.2849 0.1273 0.5163 -0.3456 0.0838 -0.2919 'X-RAY DIFFRACTION' 3 ? refined 22.0637 -1.2530 37.0753 0.1318 0.0869 0.0743 0.0314 0.0700 -0.0196 4.2677 7.9624 4.1254 -0.6927 1.8285 0.3327 -0.0545 0.0493 0.0052 0.1682 -0.0796 -0.3653 -0.2817 0.0569 0.1830 'X-RAY DIFFRACTION' 4 ? refined 23.7726 5.9454 32.7003 0.2566 0.1468 0.1789 -0.0047 0.1287 0.0129 8.8772 10.5736 8.9564 -2.9931 -0.2885 0.1514 0.0496 0.0736 -0.1232 0.5308 0.2370 -0.8271 -0.8055 0.0888 0.1808 'X-RAY DIFFRACTION' 5 ? refined 15.2830 7.4128 32.5040 0.2423 0.1552 0.0912 0.0099 0.0011 0.0254 8.4722 7.6722 6.2020 1.2038 -3.8844 -0.1795 0.1525 -0.0063 -0.1461 0.4610 0.4372 0.2180 -0.5551 -0.0081 -0.2875 'X-RAY DIFFRACTION' 6 ? refined 11.3103 0.3137 33.2704 0.2907 0.2106 0.1755 -0.0332 -0.0231 -0.0702 10.7411 7.9921 10.8749 1.5307 -3.8816 1.7076 -0.2240 -0.0092 0.2332 0.8181 -0.7468 0.4171 -0.4712 0.4363 -0.2691 'X-RAY DIFFRACTION' 7 ? refined 9.2556 4.8789 40.0482 0.1282 0.1121 0.1136 -0.0322 -0.0407 0.0062 4.5248 10.8436 10.8963 -3.3148 1.4904 2.0073 0.1202 -0.1048 -0.0155 0.3032 -0.0847 0.6247 -0.5374 0.1628 -0.4926 'X-RAY DIFFRACTION' 8 ? refined 17.1905 2.5109 45.3127 0.0961 0.0302 0.0671 0.0121 0.0101 -0.0162 12.1473 5.1486 7.1738 -3.4068 1.2379 0.3004 0.0620 0.0788 -0.1407 0.0483 -0.3939 0.0457 0.0587 0.3883 0.0824 'X-RAY DIFFRACTION' 9 ? refined 24.5710 2.7556 47.3824 0.2197 0.3261 0.1715 0.1152 0.0367 0.0271 4.8182 7.9773 7.5087 -2.3065 5.9942 -2.3333 0.1982 -0.2308 0.0326 0.8441 0.0609 -0.3857 -0.4185 0.2897 1.1023 'X-RAY DIFFRACTION' 10 ? refined 22.8749 11.9882 38.5791 0.1342 0.1045 0.1913 -0.0025 0.0851 0.0153 4.6159 11.4166 9.0523 0.1348 -1.2097 -3.2690 0.1286 -0.1198 -0.0088 -0.2129 0.1787 -0.5366 -0.0935 -0.0246 0.2769 'X-RAY DIFFRACTION' 11 ? refined 16.8955 17.0985 36.2652 0.2164 0.1335 0.1152 0.0043 0.0616 0.0727 6.9998 12.1974 5.6351 -4.8715 -3.3993 5.3262 0.2101 -0.3332 0.1231 0.3174 0.2370 -0.1643 -0.3799 -0.1421 -0.4016 'X-RAY DIFFRACTION' 12 ? refined 14.0307 24.5688 41.5411 0.1825 0.1329 0.1741 0.0102 0.0142 0.0587 7.7525 9.7425 13.8654 -1.2562 -0.3268 0.9039 0.0149 -0.0957 0.0808 0.3034 0.4001 -0.2306 -0.4309 -0.2067 0.1343 'X-RAY DIFFRACTION' 13 ? refined 17.4820 22.0560 49.8634 0.0932 0.0355 0.1498 -0.0245 -0.0074 0.0136 3.7018 4.7666 11.1513 0.3213 -0.0285 -2.4594 -0.0446 -0.0568 0.1014 0.0686 0.4220 -0.3578 -0.0281 -0.6908 0.3004 'X-RAY DIFFRACTION' 14 ? refined 18.8477 17.2766 57.5801 0.1025 0.0797 0.1550 -0.0095 -0.0489 -0.0108 2.7692 0.9912 8.6295 -0.7624 -0.1398 -2.5505 0.0629 -0.0960 0.0331 0.0441 0.2152 -0.0926 0.0920 -0.3150 0.2992 'X-RAY DIFFRACTION' 15 ? refined 11.6208 11.3153 56.9532 0.1012 0.0829 0.0607 -0.0252 -0.0144 0.0090 8.2419 9.4759 9.4172 -0.6722 -2.8392 2.1054 -0.0947 0.0367 0.0580 -0.2851 -0.2531 0.1728 0.1035 0.2137 -0.3752 'X-RAY DIFFRACTION' 16 ? refined 8.0635 17.8746 55.5498 0.1054 0.1516 0.0999 0.0372 0.0015 0.0224 12.1111 16.3618 16.6586 -0.0946 -3.7980 -14.1015 -0.0920 0.2286 -0.1366 -0.0316 0.0969 0.0859 0.0817 -0.1703 -0.4482 'X-RAY DIFFRACTION' 17 ? refined 6.5979 18.3172 47.9014 0.0634 0.0762 0.0670 0.0233 0.0021 0.0488 7.6980 11.9448 7.2676 -3.7468 -0.9620 1.9824 -0.1533 0.1758 -0.0225 -0.1751 0.0558 0.3752 0.3043 -0.0860 -0.4444 'X-RAY DIFFRACTION' 18 ? refined 15.0009 13.2097 46.4240 0.0400 0.0060 0.0360 0.0005 0.0049 0.0064 4.7952 4.9182 2.7520 -1.3267 -0.4456 -0.9508 0.0383 -0.0586 0.0203 0.1230 0.1036 -0.1820 -0.2545 -0.0870 0.0640 'X-RAY DIFFRACTION' 19 ? refined 24.2016 12.1549 49.8017 0.1459 0.2573 0.2805 -0.0079 0.0340 0.0005 12.2210 13.7906 10.2227 2.4706 5.8207 0.2170 0.0688 -0.0799 0.0111 -0.8332 -0.0534 -0.9591 0.4059 -0.1840 0.7969 'X-RAY DIFFRACTION' 20 ? refined -1.0040 17.9110 75.2205 0.2430 0.4012 0.2880 0.0077 -0.0237 -0.0545 16.7145 2.2986 10.7488 4.9777 -2.3380 -3.6090 -0.2513 -0.0125 0.2638 -0.5530 -0.1908 -0.1160 -0.1882 0.4135 -0.2131 'X-RAY DIFFRACTION' 21 ? refined 6.1285 18.5035 76.0187 0.1408 0.3406 0.2273 -0.0200 -0.0076 -0.0660 11.1941 9.0778 10.7301 -5.3469 1.6415 3.8400 0.0836 0.0163 -0.0999 -0.3303 0.0379 0.4109 0.0238 -0.0016 -0.8201 'X-RAY DIFFRACTION' 22 ? refined 13.2222 17.8716 79.9589 0.1522 0.2126 0.1153 -0.0204 -0.0187 -0.0795 7.8044 6.4734 9.0744 -3.1243 2.3384 -2.8401 -0.1476 0.0673 0.0803 -0.5824 0.5494 0.3212 0.4040 -0.3589 -0.1369 'X-RAY DIFFRACTION' 23 ? refined 19.1825 14.6025 83.0669 0.2027 0.2390 0.0742 -0.0397 -0.0599 -0.0403 18.4189 7.8620 10.9063 -0.7083 -1.3324 -0.5365 -0.2505 0.1088 0.1417 -0.8782 0.6275 -0.2502 0.7017 -0.0768 0.0271 'X-RAY DIFFRACTION' 24 ? refined 15.1525 6.9769 82.7012 0.3088 0.2903 0.1865 -0.0640 -0.0104 0.0348 7.0276 1.5835 3.7132 -1.2409 2.6829 1.4226 0.1019 -0.0380 -0.0640 -0.2295 -0.4066 0.0766 0.4811 0.6714 -0.1857 'X-RAY DIFFRACTION' 25 ? refined 6.8428 7.3426 81.4954 0.1846 0.3641 0.2076 -0.1172 0.0818 0.0020 5.6724 13.5785 12.6964 -0.5007 -1.5800 3.3724 -0.0161 -0.3484 0.3646 -0.4916 -0.0313 0.7121 0.3855 0.2231 -0.6020 'X-RAY DIFFRACTION' 26 ? refined 9.8986 4.8963 74.4441 0.1195 0.3034 0.2336 -0.1250 0.0092 0.0716 5.2434 10.0519 12.6379 2.8316 -6.5366 -0.0276 0.0063 -0.2237 0.2174 -0.4704 -0.2969 0.4641 0.4843 0.5196 -0.2005 'X-RAY DIFFRACTION' 27 ? refined 13.9957 14.0283 69.1219 0.0412 0.1017 0.0716 -0.0161 -0.0103 -0.0348 5.3036 6.0336 4.9325 -0.0182 -0.2446 0.4881 0.0370 -0.0664 0.0294 -0.1503 0.0870 0.2327 0.0978 -0.0514 -0.2163 'X-RAY DIFFRACTION' 28 ? refined 23.7537 12.4687 74.4125 0.2106 0.1790 0.1414 -0.0419 -0.0567 -0.0026 1.9051 8.9835 4.8851 3.1177 -2.5532 -6.5605 -0.0071 -0.1439 0.1511 -0.1769 -0.0690 -0.2232 0.0215 -0.0009 0.1536 'X-RAY DIFFRACTION' 29 ? refined 23.6528 4.5036 79.6636 0.2691 0.2512 0.1306 0.0099 -0.0527 0.0628 9.6082 18.5458 7.3353 2.1706 1.0674 3.6132 0.0421 -0.1185 0.0765 -0.2456 -0.7615 -0.1169 0.4065 0.4902 0.3303 'X-RAY DIFFRACTION' 30 ? refined 26.1976 -3.7939 74.5651 0.4182 0.3690 0.3700 0.0214 -0.0709 0.1978 0.9803 8.6855 14.7047 -1.5783 -3.7214 4.3915 -0.1356 -0.0777 0.2133 -0.1253 -0.1197 0.2969 0.7163 0.3559 0.3313 'X-RAY DIFFRACTION' 31 ? refined 28.3244 -0.0480 68.0091 0.1334 0.1405 0.2034 0.0470 -0.0795 0.0459 8.4332 11.4172 8.4554 -1.3292 -0.9320 2.9294 -0.1879 0.1548 0.0332 -0.3859 -0.1330 -0.8458 0.4831 0.4690 0.6291 'X-RAY DIFFRACTION' 32 ? refined 27.4939 2.4467 61.1820 0.0718 0.0949 0.1461 0.0265 -0.0381 0.0175 12.2065 6.3068 9.8590 -1.3510 1.6259 -0.9435 0.0491 -0.0846 0.0355 0.1688 -0.0217 -0.6167 0.0247 0.0814 0.7701 'X-RAY DIFFRACTION' 33 ? refined 18.4991 3.8315 57.7932 0.0967 0.0933 0.0984 0.0141 -0.0260 -0.0152 6.0738 2.2061 8.0890 -2.3685 -0.7174 1.0948 0.0815 -0.2406 0.1592 -0.1059 -0.2750 0.0513 0.0379 0.3087 -0.4019 'X-RAY DIFFRACTION' 34 ? refined 17.9917 -3.2813 58.1244 0.2651 0.0780 0.2243 -0.0559 -0.0056 -0.0340 24.6233 18.4862 26.9839 -2.2500 15.2334 -8.1865 0.3820 -0.3878 0.0058 0.0300 -0.4924 0.1911 0.0925 1.2893 -0.1647 'X-RAY DIFFRACTION' 35 ? refined 20.6402 -8.1914 64.8084 0.4038 0.1696 0.4035 -0.0313 0.0459 -0.0095 1.5710 14.2030 16.0345 -2.3543 -0.2884 -12.6271 -0.2053 -0.1007 0.3060 0.0274 -0.2479 0.1484 -0.6617 1.1989 0.0898 'X-RAY DIFFRACTION' 36 ? refined 16.5936 -2.2384 69.7798 0.1603 0.0977 0.1502 -0.0291 -0.0109 0.0196 6.0286 9.4917 8.0188 2.6155 -1.6278 -0.9711 0.0787 -0.0551 -0.0236 -0.1020 -0.2934 0.5514 0.2324 0.4278 -0.2966 'X-RAY DIFFRACTION' 37 ? refined 18.3706 4.9102 68.8169 0.0724 0.1800 0.0524 -0.0082 -0.0283 -0.0319 1.7403 5.2906 3.4997 0.8763 -1.7993 1.4550 -0.1102 -0.0212 0.1314 -0.1977 0.0060 0.0703 0.2754 0.2833 -0.0217 'X-RAY DIFFRACTION' 38 ? refined 24.5068 12.1017 66.5472 0.0874 0.1338 0.1306 -0.0142 -0.0350 -0.0254 1.7667 11.3217 3.0492 1.4547 -0.5761 -1.3823 -0.0105 -0.0087 0.0192 -0.0450 -0.0851 -0.3009 -0.0905 0.1134 0.2544 'X-RAY DIFFRACTION' # loop_ _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.selection_details 1 1 . . . . ? A 614 A 619 'X-RAY DIFFRACTION' ? 2 2 . . . . ? A 620 A 624 'X-RAY DIFFRACTION' ? 3 3 . . . . ? A 625 A 630 'X-RAY DIFFRACTION' ? 4 4 . . . . ? A 631 A 635 'X-RAY DIFFRACTION' ? 5 5 . . . . ? A 636 A 641 'X-RAY DIFFRACTION' ? 6 6 . . . . ? A 642 A 647 'X-RAY DIFFRACTION' ? 7 7 . . . . ? A 648 A 653 'X-RAY DIFFRACTION' ? 8 8 . . . . ? A 654 A 660 'X-RAY DIFFRACTION' ? 9 9 . . . . ? A 661 A 665 'X-RAY DIFFRACTION' ? 10 10 . . . . ? A 666 A 670 'X-RAY DIFFRACTION' ? 11 11 . . . . ? A 671 A 675 'X-RAY DIFFRACTION' ? 12 12 . . . . ? A 676 A 680 'X-RAY DIFFRACTION' ? 13 13 . . . . ? A 681 A 687 'X-RAY DIFFRACTION' ? 14 14 . . . . ? A 688 A 693 'X-RAY DIFFRACTION' ? 15 15 . . . . ? A 694 A 698 'X-RAY DIFFRACTION' ? 16 16 . . . . ? A 699 A 704 'X-RAY DIFFRACTION' ? 17 17 . . . . ? A 705 A 710 'X-RAY DIFFRACTION' ? 18 18 . . . . ? A 711 A 718 'X-RAY DIFFRACTION' ? 19 19 . . . . ? A 719 A 723 'X-RAY DIFFRACTION' ? 20 20 . . . . ? B 615 B 620 'X-RAY DIFFRACTION' ? 21 21 . . . . ? B 621 B 625 'X-RAY DIFFRACTION' ? 22 22 . . . . ? B 626 B 630 'X-RAY DIFFRACTION' ? 23 23 . . . . ? B 631 B 635 'X-RAY DIFFRACTION' ? 24 24 . . . . ? B 636 B 641 'X-RAY DIFFRACTION' ? 25 25 . . . . ? B 642 B 648 'X-RAY DIFFRACTION' ? 26 26 . . . . ? B 649 B 654 'X-RAY DIFFRACTION' ? 27 27 . . . . ? B 655 B 664 'X-RAY DIFFRACTION' ? 28 28 . . . . ? B 665 B 669 'X-RAY DIFFRACTION' ? 29 29 . . . . ? B 670 B 674 'X-RAY DIFFRACTION' ? 30 30 . . . . ? B 675 B 680 'X-RAY DIFFRACTION' ? 31 31 . . . . ? B 681 B 685 'X-RAY DIFFRACTION' ? 32 32 . . . . ? B 686 B 690 'X-RAY DIFFRACTION' ? 33 33 . . . . ? B 691 B 697 'X-RAY DIFFRACTION' ? 34 34 . . . . ? B 698 B 702 'X-RAY DIFFRACTION' ? 35 35 . . . . ? B 703 B 707 'X-RAY DIFFRACTION' ? 36 36 . . . . ? B 708 B 712 'X-RAY DIFFRACTION' ? 37 37 . . . . ? B 713 B 717 'X-RAY DIFFRACTION' ? 38 38 . . . . ? B 718 B 725 'X-RAY DIFFRACTION' ? # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal DENZO . ? package 'Zbyszek Otwinowski' zbyszek@mix.swmed.edu 'data reduction' http://www.lnls.br/infra/linhasluz/denzo-hkl.htm ? ? 1 SCALEPACK . ? package 'Zbyszek Otwinowski' zbyszek@mix.swmed.edu 'data scaling' http://www.lnls.br/infra/linhasluz/denzo-hkl.htm ? ? 2 REFMAC refmac_5.5.0102 24/04/2001 program 'Murshudov, G.N.' ccp4@dl.ac.uk refinement http://www.ccp4.ac.uk/main.html Fortran_77 ? 3 PDB_EXTRACT 3.004 'September 10, 2007' package PDB sw-help@rcsb.rutgers.edu 'data extraction' http://pdb.rutgers.edu/software/ C++ ? 4 SBC-Collect . ? ? ? ? 'data collection' ? ? ? 5 HKL-3000 . ? ? ? ? 'data reduction' ? ? ? 6 HKL-3000 . ? ? ? ? 'data scaling' ? ? ? 7 SHELX . ? ? ? ? phasing ? ? ? 8 MLPHARE . ? ? ? ? phasing ? ? ? 9 DM . ? ? ? ? phasing ? ? ? 10 ARP/wARP . ? ? ? ? 'model building' ? ? ? 11 Coot . ? ? ? ? 'model building' ? ? ? 12 # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 O _pdbx_validate_close_contact.auth_asym_id_1 B _pdbx_validate_close_contact.auth_comp_id_1 HOH _pdbx_validate_close_contact.auth_seq_id_1 121 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 B _pdbx_validate_close_contact.auth_comp_id_2 HOH _pdbx_validate_close_contact.auth_seq_id_2 134 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.08 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A LYS 689 ? CG ? A LYS 86 CG 2 1 Y 1 A LYS 689 ? CD ? A LYS 86 CD 3 1 Y 1 A LYS 689 ? CE ? A LYS 86 CE 4 1 Y 1 A LYS 689 ? NZ ? A LYS 86 NZ 5 1 Y 1 B GLU 674 ? CG ? B GLU 71 CG 6 1 Y 1 B GLU 674 ? CD ? B GLU 71 CD 7 1 Y 1 B GLU 674 ? OE1 ? B GLU 71 OE1 8 1 Y 1 B GLU 674 ? OE2 ? B GLU 71 OE2 9 1 Y 1 B ASP 677 ? CG ? B ASP 74 CG 10 1 Y 1 B ASP 677 ? OD1 ? B ASP 74 OD1 11 1 Y 1 B ASP 677 ? OD2 ? B ASP 74 OD2 12 1 Y 1 B GLU 678 ? CG ? B GLU 75 CG 13 1 Y 1 B GLU 678 ? CD ? B GLU 75 CD 14 1 Y 1 B GLU 678 ? OE1 ? B GLU 75 OE1 15 1 Y 1 B GLU 678 ? OE2 ? B GLU 75 OE2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLU 604 ? A GLU 1 2 1 Y 1 A ASN 605 ? A ASN 2 3 1 Y 1 A GLU 606 ? A GLU 3 4 1 Y 1 A ILE 607 ? A ILE 4 5 1 Y 1 A GLU 608 ? A GLU 5 6 1 Y 1 A ARG 609 ? A ARG 6 7 1 Y 1 A PRO 610 ? A PRO 7 8 1 Y 1 A GLU 611 ? A GLU 8 9 1 Y 1 A ASP 612 ? A ASP 9 10 1 Y 1 A MSE 613 ? A MSE 10 11 1 Y 1 A ALA 724 ? A ALA 121 12 1 Y 1 A ASN 725 ? A ASN 122 13 1 Y 1 B GLU 604 ? B GLU 1 14 1 Y 1 B ASN 605 ? B ASN 2 15 1 Y 1 B GLU 606 ? B GLU 3 16 1 Y 1 B ILE 607 ? B ILE 4 17 1 Y 1 B GLU 608 ? B GLU 5 18 1 Y 1 B ARG 609 ? B ARG 6 19 1 Y 1 B PRO 610 ? B PRO 7 20 1 Y 1 B GLU 611 ? B GLU 8 21 1 Y 1 B ASP 612 ? B ASP 9 22 1 Y 1 B MSE 613 ? B MSE 10 23 1 Y 1 B ARG 614 ? B ARG 11 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'SODIUM ION' NA 3 'CHLORIDE ION' CL 4 water HOH #