HEADER LYASE 31-AUG-09 3IUZ TITLE CRYSTAL STRUCTURE OF PUTATIVE GLYOXALASE SUPERFAMILY PROTEIN TITLE 2 (YP_299723.1) FROM RALSTONIA EUTROPHA JMP134 AT 1.90 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE GLYOXALASE SUPERFAMILY PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RALSTONIA EUTROPHA; SOURCE 3 ORGANISM_COMMON: ALCALIGENES EUTROPHUS; SOURCE 4 ORGANISM_TAXID: 264198; SOURCE 5 STRAIN: JMP134; SOURCE 6 GENE: REUT_B5534, YP_299723.1; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS YP_299723.1, PUTATIVE GLYOXALASE SUPERFAMILY PROTEIN, STRUCTURAL KEYWDS 2 GENOMICS, JOINT CENTER FOR STRUCTURAL GENOMICS, JCSG, PROTEIN KEYWDS 3 STRUCTURE INITIATIVE, PSI-2, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 5 01-FEB-23 3IUZ 1 REMARK SEQADV REVDAT 4 24-JUL-19 3IUZ 1 REMARK LINK REVDAT 3 01-NOV-17 3IUZ 1 REMARK REVDAT 2 13-JUL-11 3IUZ 1 VERSN REVDAT 1 08-SEP-09 3IUZ 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF PUTATIVE GLYOXALASE SUPERFAMILY PROTEIN JRNL TITL 2 (YP_299723.1) FROM RALSTONIA EUTROPHA JMP134 AT 1.90 A JRNL TITL 3 RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0053 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.90 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 34930 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.169 REMARK 3 R VALUE (WORKING SET) : 0.167 REMARK 3 FREE R VALUE : 0.206 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1752 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2397 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.76 REMARK 3 BIN R VALUE (WORKING SET) : 0.2370 REMARK 3 BIN FREE R VALUE SET COUNT : 136 REMARK 3 BIN FREE R VALUE : 0.2580 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2460 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 66 REMARK 3 SOLVENT ATOMS : 291 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 21.87 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.18 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.77000 REMARK 3 B22 (A**2) : 0.77000 REMARK 3 B33 (A**2) : -1.54000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.118 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.118 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.072 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.507 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.960 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.936 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2646 ; 0.017 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1855 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3579 ; 1.562 ; 1.974 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4474 ; 0.905 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 339 ; 6.006 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 129 ;34.031 ;22.713 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 413 ;13.178 ;15.061 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 30 ;22.460 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 393 ; 0.090 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2974 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 577 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1615 ; 0.946 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 666 ; 0.280 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2590 ; 1.625 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1031 ; 2.477 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 978 ; 3.850 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 0 A 327 REMARK 3 ORIGIN FOR THE GROUP (A): 22.0910 49.7009 17.5344 REMARK 3 T TENSOR REMARK 3 T11: 0.0018 T22: 0.0294 REMARK 3 T33: 0.0141 T12: 0.0048 REMARK 3 T13: 0.0043 T23: 0.0191 REMARK 3 L TENSOR REMARK 3 L11: 0.2447 L22: 0.4140 REMARK 3 L33: 0.4841 L12: 0.0711 REMARK 3 L13: 0.0315 L23: -0.1715 REMARK 3 S TENSOR REMARK 3 S11: 0.0016 S12: -0.0255 S13: -0.0023 REMARK 3 S21: 0.0247 S22: 0.0310 S23: 0.0417 REMARK 3 S31: -0.0141 S32: -0.0321 S33: -0.0327 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1. HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. 2. A MET-INHIBITION PROTOCOL WAS USED FOR REMARK 3 SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE REMARK 3 OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO REMARK 3 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET REMARK 3 INCORPORATION. 3. ATOM RECORDS CONTAIN RESIDUAL B FACTORS ONLY. REMARK 3 4. POLY ETHYLENE GLYCOL FRAGMENTS (PGE, P6G) MODELED ARE PRESENT REMARK 3 IN CRYSTALLIZATION/CRYO CONDITIONS. REMARK 4 REMARK 4 3IUZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-SEP-09. REMARK 100 THE DEPOSITION ID IS D_1000054897. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-APR-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91837,0.97860,0.97806 REMARK 200 MONOCHROMATOR : SINGLE CRYSTAL SI(111) BENT REMARK 200 MONOCHROMATOR (HORIZONTAL REMARK 200 FOCUSING) REMARK 200 OPTICS : FLAT MIRROR (VERTICAL FOCUSING) REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA 3.2.5 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 34930 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 28.904 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 7.400 REMARK 200 R MERGE (I) : 0.13700 REMARK 200 R SYM (I) : 0.13700 REMARK 200 FOR THE DATA SET : 11.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.40 REMARK 200 R MERGE FOR SHELL (I) : 0.98600 REMARK 200 R SYM FOR SHELL (I) : 0.98600 REMARK 200 FOR SHELL : 0.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELX, AUTOSHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.53 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.90 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 40.0000% POLYETHYLENE GLYCOL 600, 0.1M REMARK 280 SODIUM CITRATE PH 5.5, NANODROP, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 11555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 12555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 13555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 14555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 15555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 57.03450 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 57.03450 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 66.75900 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 57.03450 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 57.03450 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 66.75900 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 57.03450 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 57.03450 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 66.75900 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 57.03450 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 57.03450 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 66.75900 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 57.03450 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 57.03450 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 66.75900 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 57.03450 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 57.03450 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 66.75900 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 57.03450 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 57.03450 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 66.75900 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 57.03450 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 57.03450 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 66.75900 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 311 REMARK 465 ASP A 312 REMARK 465 ALA A 313 REMARK 465 PRO A 314 REMARK 465 ALA A 315 REMARK 465 ALA A 316 REMARK 465 SER A 317 REMARK 465 PRO A 318 REMARK 465 ASN A 328 REMARK 465 ALA A 329 REMARK 465 GLN A 330 REMARK 465 GLY A 331 REMARK 465 ILE A 332 REMARK 465 PHE A 333 REMARK 465 MLY A 334 REMARK 465 MSE A 335 REMARK 465 THR A 336 REMARK 465 ALA A 337 REMARK 465 ALA A 338 REMARK 465 VAL A 339 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 15 CD OE1 OE2 REMARK 470 ARG A 121 CD NE CZ NH1 NH2 REMARK 470 MLY A 262 CG CD CE NZ CH1 CH2 REMARK 470 GLU A 264 OE1 OE2 REMARK 470 ARG A 309 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 319 CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OD2 ASP A 261 OD2 ASP A 261 16555 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 64 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG A 156 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 ARG A 277 NE - CZ - NH2 ANGL. DEV. = 5.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 134 66.87 -165.86 REMARK 500 ASP A 325 141.49 -37.73 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 PGE A 343 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE P6G A 340 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PGE A 341 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PGE A 342 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PGE A 343 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PGE A 344 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PGE A 345 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 381263 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 1. THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG REMARK 999 MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING REMARK 999 ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. 2. THE PROTEIN REMARK 999 WAS REDUCTIVELY METHYLATED PRIOR TO CRYSTALLIZATION. DBREF 3IUZ A 1 339 UNP Q46PQ5 Q46PQ5_RALEJ 1 339 SEQADV 3IUZ GLY A 0 UNP Q46PQ5 EXPRESSION TAG SEQRES 1 A 340 GLY MSE HIS PRO ASN ILE ALA THR LEU LEU SER ALA ASN SEQRES 2 A 340 LEU GLY GLU SER ARG THR ARG HIS LEU LEU SER LEU VAL SEQRES 3 A 340 SER VAL PRO ASP GLY LEU PRO SER ASP ALA GLU GLY ARG SEQRES 4 A 340 ALA THR ARG ALA GLU ILE ALA GLN ALA LEU ASN MSE VAL SEQRES 5 A 340 LEU PHE ALA GLY ILE LEU ASP ARG VAL PRO THR GLY ARG SEQRES 6 A 340 ALA TYR THR ASP ASP VAL ALA ALA THR GLY GLY MLY VAL SEQRES 7 A 340 VAL PHE ASP HIS GLY ALA LEU ARG THR VAL MLY TRP ARG SEQRES 8 A 340 ASP ASN GLY ALA LEU PRO GLU GLY GLU ALA ALA PHE THR SEQRES 9 A 340 ARG ILE LEU ARG PRO LEU GLY TYR ARG LEU ASN GLY ASN SEQRES 10 A 340 TYR PRO LEU ASP ARG ILE SER MSE THR GLY ARG SER TYR SEQRES 11 A 340 ALA HIS ALA ASP ALA PRO GLU GLY ILE ALA GLN PHE PHE SEQRES 12 A 340 VAL SER GLU PHE HIS PRO GLU ARG PHE SER ASP ALA PHE SEQRES 13 A 340 ARG GLU ALA VAL GLY ARG VAL THR GLY ASN SER ALA ASP SEQRES 14 A 340 PRO LEU THR PRO ARG ALA GLN THR LEU LEU TRP GLN LEU SEQRES 15 A 340 ASP ARG ASP GLY VAL LEU THR VAL ALA ASP GLY ALA GLU SEQRES 16 A 340 LEU ILE GLY LEU LEU VAL PRO CYS PHE GLU ARG GLN HIS SEQRES 17 A 340 GLY VAL PRO ARG LEU ALA ASP TYR GLU THR LEU LEU ARG SEQRES 18 A 340 GLU SER ALA GLU MSE ALA TRP ILE ALA THR GLU GLY ASN SEQRES 19 A 340 ALA PHE ASN HIS ALA THR ASP ARG VAL ASP ASP VAL PHE SEQRES 20 A 340 GLY LEU SER GLU GLN GLN MLY ALA LEU GLY ARG PRO MSE SEQRES 21 A 340 MLY ASP MLY VAL GLU VAL SER GLY SER GLY ARG VAL MLY SEQRES 22 A 340 GLN THR ALA PHE ARG ALA ASP THR VAL ARG ARG GLN PHE SEQRES 23 A 340 ILE GLY ALA GLN GLY GLU THR VAL GLU ARG ASP VAL PRO SEQRES 24 A 340 GLY SER PHE TYR GLU PHE ILE THR ARG ASP ARG PHE ALA SEQRES 25 A 340 ASP ALA PRO ALA ALA SER PRO ARG VAL ASP LEU GLY PHE SEQRES 26 A 340 ASP ALA GLY ASN ALA GLN GLY ILE PHE MLY MSE THR ALA SEQRES 27 A 340 ALA VAL MODRES 3IUZ MSE A 1 MET SELENOMETHIONINE MODRES 3IUZ MSE A 50 MET SELENOMETHIONINE MODRES 3IUZ MLY A 76 LYS N-DIMETHYL-LYSINE MODRES 3IUZ MLY A 88 LYS N-DIMETHYL-LYSINE MODRES 3IUZ MSE A 124 MET SELENOMETHIONINE MODRES 3IUZ MSE A 225 MET SELENOMETHIONINE MODRES 3IUZ MLY A 253 LYS N-DIMETHYL-LYSINE MODRES 3IUZ MSE A 259 MET SELENOMETHIONINE MODRES 3IUZ MLY A 260 LYS N-DIMETHYL-LYSINE MODRES 3IUZ MLY A 262 LYS N-DIMETHYL-LYSINE MODRES 3IUZ MLY A 272 LYS N-DIMETHYL-LYSINE HET MSE A 1 8 HET MSE A 50 8 HET MLY A 76 11 HET MLY A 88 11 HET MSE A 124 8 HET MSE A 225 8 HET MLY A 253 11 HET MSE A 259 8 HET MLY A 260 11 HET MLY A 262 5 HET MLY A 272 11 HET P6G A 340 19 HET PGE A 341 10 HET PGE A 342 10 HET PGE A 343 7 HET PGE A 344 10 HET PGE A 345 10 HETNAM MSE SELENOMETHIONINE HETNAM MLY N-DIMETHYL-LYSINE HETNAM P6G HEXAETHYLENE GLYCOL HETNAM PGE TRIETHYLENE GLYCOL HETSYN P6G POLYETHYLENE GLYCOL PEG400 FORMUL 1 MSE 5(C5 H11 N O2 SE) FORMUL 1 MLY 6(C8 H18 N2 O2) FORMUL 2 P6G C12 H26 O7 FORMUL 3 PGE 5(C6 H14 O4) FORMUL 8 HOH *291(H2 O) HELIX 1 1 HIS A 2 GLY A 14 1 13 HELIX 2 2 GLY A 14 VAL A 25 1 12 HELIX 3 3 ARG A 41 VAL A 60 1 20 HELIX 4 4 VAL A 60 THR A 73 1 14 HELIX 5 5 GLU A 99 GLY A 110 1 12 HELIX 6 6 ASP A 120 ILE A 122 5 3 HELIX 7 7 SER A 152 GLY A 164 1 13 HELIX 8 8 THR A 171 GLY A 185 1 15 HELIX 9 9 THR A 188 VAL A 200 1 13 HELIX 10 10 PRO A 201 PHE A 203 5 3 HELIX 11 11 ARG A 211 SER A 222 1 12 HELIX 12 12 SER A 222 GLY A 232 1 11 HELIX 13 13 ASP A 244 LEU A 255 1 12 SHEET 1 A 2 ALA A 39 THR A 40 0 SHEET 2 A 2 VAL A 186 LEU A 187 -1 O LEU A 187 N ALA A 39 SHEET 1 B 8 TYR A 111 LEU A 119 0 SHEET 2 B 8 MSE A 124 HIS A 131 -1 O SER A 128 N ASN A 114 SHEET 3 B 8 GLN A 140 PHE A 146 -1 O VAL A 143 N ARG A 127 SHEET 4 B 8 PHE A 79 VAL A 87 1 N THR A 86 O PHE A 146 SHEET 5 B 8 HIS A 237 ARG A 241 -1 O THR A 239 N ASP A 80 SHEET 6 B 8 PHE A 301 ARG A 307 1 O GLU A 303 N ALA A 238 SHEET 7 B 8 VAL A 271 ALA A 275 -1 N THR A 274 O PHE A 304 SHEET 8 B 8 GLU A 264 VAL A 265 -1 N GLU A 264 O GLN A 273 SHEET 1 C 2 THR A 280 ILE A 286 0 SHEET 2 C 2 THR A 292 PRO A 298 -1 O VAL A 297 N VAL A 281 LINK C GLY A 0 N MSE A 1 1555 1555 1.33 LINK C MSE A 1 N HIS A 2 1555 1555 1.33 LINK C ASN A 49 N MSE A 50 1555 1555 1.33 LINK C MSE A 50 N VAL A 51 1555 1555 1.34 LINK C GLY A 75 N MLY A 76 1555 1555 1.33 LINK C MLY A 76 N VAL A 77 1555 1555 1.32 LINK C VAL A 87 N MLY A 88 1555 1555 1.33 LINK C MLY A 88 N TRP A 89 1555 1555 1.33 LINK C SER A 123 N MSE A 124 1555 1555 1.33 LINK C MSE A 124 N THR A 125 1555 1555 1.32 LINK C GLU A 224 N MSE A 225 1555 1555 1.33 LINK C MSE A 225 N ALA A 226 1555 1555 1.35 LINK C GLN A 252 N MLY A 253 1555 1555 1.33 LINK C MLY A 253 N ALA A 254 1555 1555 1.33 LINK C PRO A 258 N MSE A 259 1555 1555 1.32 LINK C MSE A 259 N MLY A 260 1555 1555 1.32 LINK C MLY A 260 N ASP A 261 1555 1555 1.32 LINK C ASP A 261 N MLY A 262 1555 1555 1.32 LINK C MLY A 262 N VAL A 263 1555 1555 1.33 LINK C VAL A 271 N MLY A 272 1555 1555 1.32 LINK C MLY A 272 N GLN A 273 1555 1555 1.33 SITE 1 AC1 8 ARG A 41 ARG A 107 GLY A 110 ARG A 112 SITE 2 AC1 8 ALA A 132 ASP A 182 HOH A 471 HOH A 614 SITE 1 AC2 3 THR A 73 GLU A 216 ARG A 220 SITE 1 AC3 5 ARG A 41 ARG A 183 ASP A 184 GLY A 185 SITE 2 AC3 5 HOH A 451 SITE 1 AC4 3 MLY A 88 HIS A 147 GLU A 149 SITE 1 AC5 3 ARG A 38 ASP A 184 HOH A 615 SITE 1 AC6 5 LEU A 219 ARG A 220 ALA A 254 LEU A 255 SITE 2 AC6 5 HOH A 445 CRYST1 114.069 114.069 133.518 90.00 90.00 90.00 I 4 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008767 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008767 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007490 0.00000