HEADER LYASE 31-AUG-09 3IV3 TITLE THE STRUCTURE OF A PUTATIVE TAGATOSE 1,6-ALDOLASE FROM STREPTOCOCCUS TITLE 2 MUTANS COMPND MOL_ID: 1; COMPND 2 MOLECULE: TAGATOSE 1,6-DIPHOSPHATE ALDOLASE 2; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: TAGATOSE-BISPHOSPHATE ALDOLASE 2, D-TAGATOSE-1,6- COMPND 5 BISPHOSPHATE ALDOLASE 2; COMPND 6 EC: 4.1.2.40; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOCOCCUS MUTANS; SOURCE 3 ORGANISM_TAXID: 1309; SOURCE 4 STRAIN: UA159; SOURCE 5 GENE: LACD2, SMU_116; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PMCSG19 KEYWDS TIM BARREL, PHOSPHATE BINDING, TAGATOSE-BISPHOSPHATE ALDOLASE, D- KEYWDS 2 TAGATOSE-1, 6-BISPHOSPHATE ALDOLASE, STRUCTURAL GENOMICS, PSI-2, KEYWDS 3 PROTEIN STRUCTURE INITIATIVE, MIDWEST CENTER FOR STRUCTURAL KEYWDS 4 GENOMICS, MCSG, LACTOSE METABOLISM, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR M.E.CUFF,C.HATZOS,R.JEDRZEJCZAK,A.JOACHIMIAK,MIDWEST CENTER FOR AUTHOR 2 STRUCTURAL GENOMICS (MCSG) REVDAT 3 01-NOV-17 3IV3 1 REMARK REVDAT 2 13-JUL-11 3IV3 1 VERSN REVDAT 1 22-SEP-09 3IV3 0 JRNL AUTH M.E.CUFF,C.HATZOS,R.JEDRZEJCZAK,A.JOACHIMIAK JRNL TITL THE STRUCTURE OF A PUTATIVE TAGATOSE 1,6-ALDOLASE FROM JRNL TITL 2 STREPTOCOCCUS MUTANS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.42 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 41262 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.154 REMARK 3 R VALUE (WORKING SET) : 0.153 REMARK 3 FREE R VALUE : 0.176 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2071 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2847 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2150 REMARK 3 BIN FREE R VALUE SET COUNT : 148 REMARK 3 BIN FREE R VALUE : 0.2200 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2572 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 39 REMARK 3 SOLVENT ATOMS : 362 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 27.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.26 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.16000 REMARK 3 B22 (A**2) : 0.43000 REMARK 3 B33 (A**2) : 0.73000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.094 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.090 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.053 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.643 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.971 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.962 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2731 ; 0.015 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1862 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3697 ; 1.355 ; 1.971 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4571 ; 0.924 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 352 ; 5.958 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 129 ;35.108 ;25.504 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 488 ;13.511 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ;13.107 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 410 ; 0.087 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3046 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 526 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1671 ; 0.772 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 678 ; 0.229 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2695 ; 1.428 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1060 ; 2.405 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 990 ; 3.920 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 88 REMARK 3 ORIGIN FOR THE GROUP (A): 31.3858 11.2079 21.1971 REMARK 3 T TENSOR REMARK 3 T11: 0.0422 T22: 0.0630 REMARK 3 T33: 0.0444 T12: 0.0272 REMARK 3 T13: 0.0186 T23: -0.0015 REMARK 3 L TENSOR REMARK 3 L11: 0.7336 L22: 0.7381 REMARK 3 L33: 1.2877 L12: -0.3961 REMARK 3 L13: 0.0544 L23: 0.4193 REMARK 3 S TENSOR REMARK 3 S11: -0.0542 S12: -0.0384 S13: 0.0392 REMARK 3 S21: 0.1076 S22: 0.0322 S23: 0.0311 REMARK 3 S31: -0.0178 S32: -0.1076 S33: 0.0220 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 89 A 274 REMARK 3 ORIGIN FOR THE GROUP (A): 33.7406 19.7305 4.2486 REMARK 3 T TENSOR REMARK 3 T11: 0.0509 T22: 0.0574 REMARK 3 T33: 0.0721 T12: 0.0230 REMARK 3 T13: -0.0186 T23: 0.0088 REMARK 3 L TENSOR REMARK 3 L11: 0.5251 L22: 0.9721 REMARK 3 L33: 0.8014 L12: -0.3135 REMARK 3 L13: -0.0055 L23: 0.0984 REMARK 3 S TENSOR REMARK 3 S11: -0.0476 S12: 0.0349 S13: 0.1571 REMARK 3 S21: -0.0682 S22: 0.0196 S23: -0.0582 REMARK 3 S31: -0.1282 S32: -0.0571 S33: 0.0280 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 275 A 329 REMARK 3 ORIGIN FOR THE GROUP (A): 30.6119 21.6470 24.4764 REMARK 3 T TENSOR REMARK 3 T11: 0.0817 T22: 0.0613 REMARK 3 T33: 0.1029 T12: 0.0560 REMARK 3 T13: 0.0302 T23: -0.0051 REMARK 3 L TENSOR REMARK 3 L11: 0.9341 L22: 1.1193 REMARK 3 L33: 2.2375 L12: -0.8364 REMARK 3 L13: 0.4369 L23: 0.4641 REMARK 3 S TENSOR REMARK 3 S11: -0.0472 S12: -0.1530 S13: 0.1345 REMARK 3 S21: 0.0481 S22: 0.1568 S23: -0.0918 REMARK 3 S31: -0.2600 S32: -0.1361 S33: -0.1096 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS, U VALUES RESIDUAL ONLY REMARK 4 REMARK 4 3IV3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-SEP-09. REMARK 100 THE DEPOSITION ID IS D_1000054901. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-FEB-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.9 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97951, 0.97937 REMARK 200 MONOCHROMATOR : SAGITALLY FOCUSED SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-3000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 44503 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.750 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 15.10 REMARK 200 R MERGE (I) : 0.10800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.78 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 14.00 REMARK 200 R MERGE FOR SHELL (I) : 0.73700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: MLPHARE, DM 6.0, HKL-3000, SHELXD, SOLVE, RESOLVE, REMARK 200 CCP4 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.51 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.96 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.49 M SODIUM PHOSPHATE MONOBASIC REMARK 280 MONOHYDRATE, 0.91 M POTASSIUM PHOSPHATE DIBASIC, PH 6.9, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 37.19950 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 37.19950 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 52.10700 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 56.87950 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 52.10700 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 56.87950 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 37.19950 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 52.10700 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 56.87950 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 37.19950 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 52.10700 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 56.87950 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5590 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26880 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 18.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 104.21400 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 37.19950 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A -2 REMARK 465 ASN A -1 REMARK 465 ALA A 0 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 22 73.77 -114.12 REMARK 500 PHE A 26 52.10 -153.46 REMARK 500 ARG A 29 -90.79 -122.21 REMARK 500 GLN A 40 1.64 -150.92 REMARK 500 GLU A 216 127.41 -38.66 REMARK 500 LYS A 270 53.41 -111.45 REMARK 500 THR A 302 -82.30 -123.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 332 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LYS A 13 O REMARK 620 2 SER A 15 O 91.3 REMARK 620 3 SER A 65 O 74.4 100.4 REMARK 620 4 GLU A 84 O 102.0 164.9 90.2 REMARK 620 5 HOH A 678 O 81.0 69.1 153.1 105.6 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 337 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 238 O REMARK 620 2 THR A 241 O 67.8 REMARK 620 3 ASP A 242 OD1 145.9 81.0 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 330 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 331 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE K A 332 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 333 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 334 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 335 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 336 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE K A 337 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 338 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 339 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 340 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: APC63936 RELATED DB: TARGETDB DBREF 3IV3 A 1 329 UNP Q8DWE5 LACD2_STRMU 1 329 SEQADV 3IV3 SER A -2 UNP Q8DWE5 EXPRESSION TAG SEQADV 3IV3 ASN A -1 UNP Q8DWE5 EXPRESSION TAG SEQADV 3IV3 ALA A 0 UNP Q8DWE5 EXPRESSION TAG SEQRES 1 A 332 SER ASN ALA MSE ILE LEU SER GLN GLN LYS TYR ASN TYR SEQRES 2 A 332 LEU ALA LYS VAL SER ASP SER ASN GLY VAL ILE SER ALA SEQRES 3 A 332 LEU ALA PHE ASP GLN ARG GLY ALA LEU LYS CYS LEU MSE SEQRES 4 A 332 ALA GLN TYR GLN MSE LYS GLU PRO THR VAL ALA GLN MSE SEQRES 5 A 332 GLU GLU LEU LYS VAL LEU VAL SER GLU GLU LEU THR PRO SEQRES 6 A 332 TYR ALA SER SER ILE LEU LEU ASP PRO GLU TYR GLY LEU SEQRES 7 A 332 PRO ALA ALA GLN ALA ARG ASP ARG GLU ALA GLY LEU LEU SEQRES 8 A 332 LEU ALA TYR GLU LYS THR GLY TYR ASP ALA ASN THR THR SEQRES 9 A 332 SER ARG LEU PRO ASP CYS LEU VAL ASP TRP SER ILE LYS SEQRES 10 A 332 ARG LEU LYS GLU ALA GLY ALA ASP ALA VAL LYS PHE LEU SEQRES 11 A 332 LEU TYR TYR ASP VAL ASP GLY ASP PRO GLN VAL ASN VAL SEQRES 12 A 332 GLN LYS GLN ALA TYR ILE GLU ARG ILE GLY SER GLU CYS SEQRES 13 A 332 GLN ALA GLU ASP ILE PRO PHE PHE LEU GLU ILE LEU THR SEQRES 14 A 332 TYR ASP GLU THR ILE SER ASN ASN SER SER VAL GLU PHE SEQRES 15 A 332 ALA LYS VAL LYS VAL HIS LYS VAL ASN ASP ALA MSE LYS SEQRES 16 A 332 VAL PHE SER ALA GLU ARG PHE GLY ILE ASP VAL LEU LYS SEQRES 17 A 332 VAL GLU VAL PRO VAL ASN MSE VAL TYR VAL GLU GLY PHE SEQRES 18 A 332 ALA GLU GLY GLU VAL VAL TYR SER LYS GLU GLU ALA ALA SEQRES 19 A 332 GLN ALA PHE ARG GLU GLN GLU ALA SER THR ASP LEU PRO SEQRES 20 A 332 TYR ILE TYR LEU SER ALA GLY VAL SER ALA GLU LEU PHE SEQRES 21 A 332 GLN GLU THR LEU VAL PHE ALA HIS LYS ALA GLY ALA LYS SEQRES 22 A 332 PHE ASN GLY VAL LEU CYS GLY ARG ALA THR TRP ALA GLY SEQRES 23 A 332 SER VAL GLN VAL TYR MSE GLU GLU GLY LYS GLU ALA ALA SEQRES 24 A 332 ARG GLN TRP LEU ARG THR SER GLY LEU GLN ASN ILE ASN SEQRES 25 A 332 GLU LEU ASN LYS VAL LEU LYS THR THR ALA SER PRO TRP SEQRES 26 A 332 THR GLU LYS VAL SER VAL GLY MODRES 3IV3 MSE A 1 MET SELENOMETHIONINE MODRES 3IV3 MSE A 36 MET SELENOMETHIONINE MODRES 3IV3 MSE A 41 MET SELENOMETHIONINE MODRES 3IV3 MSE A 49 MET SELENOMETHIONINE MODRES 3IV3 MSE A 191 MET SELENOMETHIONINE MODRES 3IV3 MSE A 212 MET SELENOMETHIONINE MODRES 3IV3 MSE A 289 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 36 8 HET MSE A 41 8 HET MSE A 49 13 HET MSE A 191 8 HET MSE A 212 8 HET MSE A 289 8 HET PO4 A 330 5 HET EDO A 331 4 HET K A 332 1 HET EDO A 333 4 HET EDO A 334 4 HET EDO A 335 4 HET EDO A 336 4 HET K A 337 1 HET EDO A 338 4 HET EDO A 339 4 HET EDO A 340 4 HETNAM MSE SELENOMETHIONINE HETNAM PO4 PHOSPHATE ION HETNAM EDO 1,2-ETHANEDIOL HETNAM K POTASSIUM ION HETSYN EDO ETHYLENE GLYCOL FORMUL 1 MSE 7(C5 H11 N O2 SE) FORMUL 2 PO4 O4 P 3- FORMUL 3 EDO 8(C2 H6 O2) FORMUL 4 K 2(K 1+) FORMUL 13 HOH *362(H2 O) HELIX 1 1 SER A 4 VAL A 14 1 11 HELIX 2 2 ARG A 29 GLN A 38 1 10 HELIX 3 3 THR A 45 THR A 61 1 17 HELIX 4 4 PRO A 62 ALA A 64 5 3 HELIX 5 5 GLY A 74 ALA A 80 1 7 HELIX 6 6 SER A 112 ALA A 119 1 8 HELIX 7 7 ASP A 135 ASP A 157 1 23 HELIX 8 8 SER A 176 LYS A 181 1 6 HELIX 9 9 VAL A 182 SER A 195 1 14 HELIX 10 10 ALA A 196 GLY A 200 5 5 HELIX 11 11 ASN A 211 VAL A 215 5 5 HELIX 12 12 SER A 226 SER A 240 1 15 HELIX 13 13 SER A 253 GLY A 268 1 16 HELIX 14 14 GLY A 277 ALA A 282 1 6 HELIX 15 15 GLY A 283 GLY A 292 1 10 HELIX 16 16 GLY A 292 ARG A 301 1 10 HELIX 17 17 THR A 302 ALA A 319 1 18 HELIX 18 18 PRO A 321 LYS A 325 5 5 SHEET 1 A 2 ILE A 2 LEU A 3 0 SHEET 2 A 2 SER A 327 VAL A 328 1 O SER A 327 N LEU A 3 SHEET 1 B 9 ILE A 21 PHE A 26 0 SHEET 2 B 9 SER A 66 LEU A 69 1 O LEU A 68 N LEU A 24 SHEET 3 B 9 GLY A 86 ALA A 90 1 O LEU A 88 N ILE A 67 SHEET 4 B 9 ALA A 123 TYR A 130 1 O LYS A 125 N LEU A 89 SHEET 5 B 9 PHE A 160 THR A 166 1 O PHE A 161 N VAL A 124 SHEET 6 B 9 VAL A 203 VAL A 206 1 O LYS A 205 N LEU A 162 SHEET 7 B 9 TYR A 245 LEU A 248 1 O ILE A 246 N VAL A 206 SHEET 8 B 9 GLY A 273 CYS A 276 1 O LEU A 275 N TYR A 247 SHEET 9 B 9 ILE A 21 PHE A 26 1 N ALA A 23 O CYS A 276 LINK C MSE A 1 N ILE A 2 1555 1555 1.33 LINK C LEU A 35 N MSE A 36 1555 1555 1.33 LINK C MSE A 36 N ALA A 37 1555 1555 1.33 LINK C GLN A 40 N MSE A 41 1555 1555 1.33 LINK C MSE A 41 N LYS A 42 1555 1555 1.33 LINK C GLN A 48 N MSE A 49 1555 1555 1.33 LINK C MSE A 49 N GLU A 50 1555 1555 1.33 LINK C ALA A 190 N MSE A 191 1555 1555 1.33 LINK C MSE A 191 N LYS A 192 1555 1555 1.33 LINK C ASN A 211 N MSE A 212 1555 1555 1.33 LINK C MSE A 212 N VAL A 213 1555 1555 1.33 LINK C TYR A 288 N MSE A 289 1555 1555 1.32 LINK C MSE A 289 N GLU A 290 1555 1555 1.34 LINK O LYS A 13 K K A 332 1555 1555 2.85 LINK O SER A 15 K K A 332 1555 1555 2.93 LINK O SER A 65 K K A 332 1555 1555 2.79 LINK O GLU A 84 K K A 332 1555 1555 2.75 LINK O GLU A 238 K K A 337 1555 1555 2.78 LINK O THR A 241 K K A 337 1555 1555 2.69 LINK OD1 ASP A 242 K K A 337 1555 1555 2.78 LINK K K A 332 O HOH A 678 1555 1555 2.65 SITE 1 AC1 8 ALA A 25 GLN A 28 SER A 249 ALA A 250 SITE 2 AC1 8 GLY A 277 ARG A 278 EDO A 335 HOH A 426 SITE 1 AC2 6 LYS A 114 SER A 151 GLN A 154 GLU A 156 SITE 2 AC2 6 GLU A 197 HOH A 375 SITE 1 AC3 5 LYS A 13 SER A 15 SER A 65 GLU A 84 SITE 2 AC3 5 HOH A 678 SITE 1 AC4 6 ASP A 110 TRP A 111 ARG A 115 HOH A 364 SITE 2 AC4 6 HOH A 607 HOH A 694 SITE 1 AC5 6 ASN A 174 LYS A 183 ASN A 211 HOH A 462 SITE 2 AC5 6 HOH A 563 HOH A 654 SITE 1 AC6 6 ASP A 27 LYS A 125 GLU A 163 LYS A 205 SITE 2 AC6 6 PO4 A 330 HOH A 659 SITE 1 AC7 4 CYS A 107 TYR A 145 ARG A 148 HOH A 358 SITE 1 AC8 4 GLU A 238 THR A 241 ASP A 242 HOH A 635 SITE 1 AC9 5 ALA A 254 GLN A 258 ALA A 279 THR A 280 SITE 2 AC9 5 ASN A 307 SITE 1 BC1 5 GLU A 229 GLN A 232 GLU A 236 EDO A 340 SITE 2 BC1 5 HOH A 507 SITE 1 BC2 6 PRO A 62 TYR A 63 GLN A 232 GLU A 236 SITE 2 BC2 6 EDO A 339 HOH A 507 CRYST1 104.214 113.759 74.399 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009596 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008791 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013441 0.00000 HETATM 1 N MSE A 1 13.563 18.196 -0.996 1.00 44.87 N HETATM 2 CA MSE A 1 14.487 17.282 -0.257 1.00 44.71 C HETATM 3 C MSE A 1 13.684 16.355 0.652 1.00 43.31 C HETATM 4 O MSE A 1 12.954 16.814 1.542 1.00 43.19 O HETATM 5 CB MSE A 1 15.487 18.072 0.588 1.00 45.62 C HETATM 6 CG MSE A 1 16.366 19.064 -0.179 1.00 48.25 C HETATM 7 SE MSE A 1 17.909 18.249 -1.054 0.70 52.72 SE HETATM 8 CE MSE A 1 17.216 18.232 -2.895 1.00 50.03 C