HEADER OXIDOREDUCTASE 31-AUG-09 3IV7 TITLE CRYSTAL STRUCTURE OF IRON-CONTAINING ALCOHOL DEHYDROGENASE TITLE 2 (NP_602249.1) FROM CORYNEBACTERIUM GLUTAMICUM ATCC 13032 KITASATO AT TITLE 3 2.07 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALCOHOL DEHYDROGENASE IV; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: MALEYLACETATE REDUCTASE; COMPND 5 EC: 1.3.1.32; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CORYNEBACTERIUM GLUTAMICUM; SOURCE 3 ORGANISM_TAXID: 1718; SOURCE 4 ATCC: 13032 KITASATO; SOURCE 5 GENE: CG3386, CGL3057, NP_602249.1, TCBF; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS NP_602249.1, IRON-CONTAINING ALCOHOL DEHYDROGENASE, STRUCTURAL KEYWDS 2 GENOMICS, JOINT CENTER FOR STRUCTURAL GENOMICS, JCSG, PROTEIN KEYWDS 3 STRUCTURE INITIATIVE, PSI-2, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 5 01-FEB-23 3IV7 1 REMARK SEQADV REVDAT 4 24-JUL-19 3IV7 1 REMARK LINK REVDAT 3 25-OCT-17 3IV7 1 REMARK REVDAT 2 13-JUL-11 3IV7 1 VERSN REVDAT 1 22-SEP-09 3IV7 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF IRON-CONTAINING ALCOHOL DEHYDROGENASE JRNL TITL 2 (NP_602249.1) FROM CORYNEBACTERIUM GLUTAMICUM ATCC 13032 JRNL TITL 3 KITASATO AT 2.07 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.07 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0053 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.07 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.88 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 3 NUMBER OF REFLECTIONS : 45625 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.173 REMARK 3 R VALUE (WORKING SET) : 0.171 REMARK 3 FREE R VALUE : 0.221 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2324 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.07 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.12 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3190 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.67 REMARK 3 BIN R VALUE (WORKING SET) : 0.2190 REMARK 3 BIN FREE R VALUE SET COUNT : 169 REMARK 3 BIN FREE R VALUE : 0.2310 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5237 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 19 REMARK 3 SOLVENT ATOMS : 397 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 31.59 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.57 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.80000 REMARK 3 B22 (A**2) : -1.24000 REMARK 3 B33 (A**2) : 2.04000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.190 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.170 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.113 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.225 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.960 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.931 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5383 ; 0.017 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 3468 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7346 ; 1.120 ; 1.965 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8528 ; 0.833 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 722 ; 3.867 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 209 ;30.729 ;24.354 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 830 ;11.035 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 30 ;12.364 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 876 ; 0.082 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6098 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1010 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3556 ; 1.830 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1448 ; 0.577 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5696 ; 2.757 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1827 ; 5.204 ; 8.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1644 ; 6.775 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 3 A 358 6 REMARK 3 1 B 3 B 358 6 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 LOOSE POSITIONAL 1 A (A): 4280 ; 0.340 ; 5.000 REMARK 3 LOOSE THERMAL 1 A (A**2): 4280 ; 2.510 ;10.000 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 3 A 358 REMARK 3 ORIGIN FOR THE GROUP (A): 27.6389 35.7614 34.9110 REMARK 3 T TENSOR REMARK 3 T11: 0.0318 T22: 0.0262 REMARK 3 T33: 0.0622 T12: 0.0184 REMARK 3 T13: 0.0442 T23: 0.0261 REMARK 3 L TENSOR REMARK 3 L11: 1.5663 L22: 1.5244 REMARK 3 L33: 1.4060 L12: 0.3247 REMARK 3 L13: -0.2383 L23: 0.0084 REMARK 3 S TENSOR REMARK 3 S11: 0.0728 S12: 0.0184 S13: 0.1321 REMARK 3 S21: 0.0584 S22: -0.0511 S23: 0.0782 REMARK 3 S31: -0.0075 S32: -0.1192 S33: -0.0218 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 3 B 358 REMARK 3 ORIGIN FOR THE GROUP (A): 47.7287 44.8542 8.2218 REMARK 3 T TENSOR REMARK 3 T11: 0.1662 T22: 0.1656 REMARK 3 T33: 0.0798 T12: 0.0554 REMARK 3 T13: 0.0838 T23: 0.0698 REMARK 3 L TENSOR REMARK 3 L11: 1.3668 L22: 2.2300 REMARK 3 L33: 2.0444 L12: 0.3282 REMARK 3 L13: -0.3117 L23: -1.0150 REMARK 3 S TENSOR REMARK 3 S11: 0.0166 S12: 0.2041 S13: -0.0081 REMARK 3 S21: -0.3581 S22: -0.0778 S23: -0.1860 REMARK 3 S31: 0.0651 S32: 0.2757 S33: 0.0612 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1. HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. 2. ATOM RECORD CONTAINS RESIDUAL B FACTORS REMARK 3 ONLY. 3. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE REMARK 3 INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE REMARK 3 ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 TO ACCOUNT FOR THE REMARK 3 REDUCED SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. 4. REMARK 3 POLYETHYLENE GLYCOL (PEG) FROM THE CRYSTALLIZATION SOLUTION AND REMARK 3 ETHYLENE GLYCOL (EDO) USED AS A CRYOPROTECTANT WERE MODELED INTO REMARK 3 THE STRUCTURE. 5).ELECTRON DENSITY NEAR GLY 97 AND GLY 98 ON THE REMARK 3 A SUBUNIT WAS NOT MODELED. THIS EXTRA ELECTRON DENSITY IS REMARK 3 BELIEVED TO BE ATTRIBUTED TO A PARTIALLY OCCUPIED NICOTINAMIDE- REMARK 3 ADENINE- DINUCLEOTIDE (NAD) COFACTOR MOLECULE. THIS TENTATIVE REMARK 3 ASSIGNMENT IS BASED ON THE BINDING OF THE COFACTOR AT THE SAME REMARK 3 RELATIVE LOCATION IN A SIMILAR STRUCTURE, MALEYLACETATE REMARK 3 REDUCTASE FROM AGROBACTERIUM TUMEFACIENS, PDB ID 3HL0. REMARK 4 REMARK 4 3IV7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-SEP-09. REMARK 100 THE DEPOSITION ID IS D_1000054905. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-APR-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97775 REMARK 200 MONOCHROMATOR : SINGLE CRYSTAL SI(111) BENT REMARK 200 MONOCHROMATOR (HORIZONTAL REMARK 200 FOCUSING) REMARK 200 OPTICS : FLAT MIRROR (VERTICAL FOCUSING) REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 45653 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.070 REMARK 200 RESOLUTION RANGE LOW (A) : 28.880 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.6 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.03400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.2900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.07 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.14 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.2 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.31100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELX, SHELXD, AUTOSHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.67 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.0000M LICL, 20.0000% PEG-6000, 0.1M REMARK 280 HEPES PH 7.0, NANODROP, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 29.36400 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 80.09250 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 39.50150 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 80.09250 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 29.36400 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 39.50150 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: ANALYTICAL SIZE EXCLUSION CHROMATOGRAPHY WITH STATIC REMARK 300 LIGHT SCATTERING SUPPORTS THE ASSIGNMENT OF A DIMER AS A REMARK 300 SIGNIFICANT OLIGOMERIZATION STATE IN SOLUTION REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3330 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26520 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 1.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 MSE A 1 REMARK 465 ASN A 2 REMARK 465 ALA A 359 REMARK 465 VAL A 360 REMARK 465 LEU A 361 REMARK 465 SER A 362 REMARK 465 ASN A 363 REMARK 465 GLY B 0 REMARK 465 MSE B 1 REMARK 465 ASN B 2 REMARK 465 ALA B 359 REMARK 465 VAL B 360 REMARK 465 LEU B 361 REMARK 465 SER B 362 REMARK 465 ASN B 363 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN A 3 CG OD1 ND2 REMARK 470 LYS A 22 CE NZ REMARK 470 ARG A 46 NE CZ NH1 NH2 REMARK 470 ILE A 50 CD1 REMARK 470 LYS A 305 CD CE NZ REMARK 470 LYS A 327 CD CE NZ REMARK 470 ASN B 3 CG OD1 ND2 REMARK 470 LYS B 38 CD CE NZ REMARK 470 ARG B 46 CG CD NE CZ NH1 NH2 REMARK 470 ILE B 50 CD1 REMARK 470 LYS B 53 CE NZ REMARK 470 GLU B 59 CD OE1 OE2 REMARK 470 LYS B 138 CG CD CE NZ REMARK 470 ASN B 252 CG OD1 ND2 REMARK 470 LYS B 305 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 71 79.14 39.66 REMARK 500 VAL B 71 73.18 43.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 364 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 365 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 364 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG B 365 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 394438 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THIS CONSTRUCT (RESIDUES 1-363) WAS EXPRESSED WITH A PURIFICATION REMARK 999 TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE REMARK 999 LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. DBREF 3IV7 A 1 363 UNP Q8NL91 Q8NL91_CORGL 1 363 DBREF 3IV7 B 1 363 UNP Q8NL91 Q8NL91_CORGL 1 363 SEQADV 3IV7 GLY A 0 UNP Q8NL91 EXPRESSION TAG SEQADV 3IV7 GLY B 0 UNP Q8NL91 EXPRESSION TAG SEQRES 1 A 364 GLY MSE ASN ASN SER LEU ALA PHE ASN HIS ASP THR LEU SEQRES 2 A 364 PRO GLN LYS VAL MSE PHE GLY TYR GLY LYS SER SER ALA SEQRES 3 A 364 PHE LEU LYS GLN GLU VAL GLU ARG ARG GLY SER ALA LYS SEQRES 4 A 364 VAL MSE VAL ILE ALA GLY GLU ARG GLU MSE SER ILE ALA SEQRES 5 A 364 HIS LYS VAL ALA SER GLU ILE GLU VAL ALA ILE TRP HIS SEQRES 6 A 364 ASP GLU VAL VAL MSE HIS VAL PRO ILE GLU VAL ALA GLU SEQRES 7 A 364 ARG ALA ARG ALA VAL ALA THR ASP ASN GLU ILE ASP LEU SEQRES 8 A 364 LEU VAL CYS VAL GLY GLY GLY SER THR ILE GLY LEU ALA SEQRES 9 A 364 LYS ALA ILE ALA MSE THR THR ALA LEU PRO ILE VAL ALA SEQRES 10 A 364 ILE PRO THR THR TYR ALA GLY SER GLU ALA THR ASN VAL SEQRES 11 A 364 TRP GLY LEU THR GLU ALA ALA ARG LYS THR THR GLY VAL SEQRES 12 A 364 ASP LEU LYS VAL LEU PRO GLU THR VAL ILE TYR ASP SER SEQRES 13 A 364 GLU LEU THR MSE SER LEU PRO VAL GLU MSE SER VAL ALA SEQRES 14 A 364 SER GLY LEU ASN GLY LEU ALA HIS CYS ILE ASP SER LEU SEQRES 15 A 364 TRP GLY PRO ASN ALA ASP PRO ILE ASN ALA VAL LEU ALA SEQRES 16 A 364 ALA GLU GLY ILE ARG ALA LEU ASN GLN GLY LEU PRO LYS SEQRES 17 A 364 ILE VAL ALA ASN PRO HIS SER ILE GLU GLY ARG ASP GLU SEQRES 18 A 364 ALA LEU TYR GLY ALA TYR LEU ALA ALA VAL SER PHE ALA SEQRES 19 A 364 SER ALA GLY SER GLY LEU HIS HIS LYS ILE CYS HIS THR SEQRES 20 A 364 LEU GLY GLY THR PHE ASN LEU PRO HIS ALA GLN THR HIS SEQRES 21 A 364 ALA THR VAL LEU PRO TYR VAL LEU ALA PHE ASN ALA GLY SEQRES 22 A 364 ASP ALA PRO GLU ALA GLU ARG ARG ALA ALA ALA ALA PHE SEQRES 23 A 364 GLY THR ASP THR ALA LEU GLU GLY LEU GLN ARG LEU ARG SEQRES 24 A 364 LEU SER VAL ASN ALA PRO LYS ARG LEU SER ASP TYR GLY SEQRES 25 A 364 PHE GLU ALA SER GLY ILE ALA GLU ALA VAL ASP VAL THR SEQRES 26 A 364 LEU GLU LYS VAL PRO ALA ASN ASN PRO ARG PRO VAL THR SEQRES 27 A 364 ARG GLU ASN LEU SER ARG LEU LEU GLU ALA ALA LEU ASN SEQRES 28 A 364 GLY GLU ASP PRO ALA VAL LEU SER ALA VAL LEU SER ASN SEQRES 1 B 364 GLY MSE ASN ASN SER LEU ALA PHE ASN HIS ASP THR LEU SEQRES 2 B 364 PRO GLN LYS VAL MSE PHE GLY TYR GLY LYS SER SER ALA SEQRES 3 B 364 PHE LEU LYS GLN GLU VAL GLU ARG ARG GLY SER ALA LYS SEQRES 4 B 364 VAL MSE VAL ILE ALA GLY GLU ARG GLU MSE SER ILE ALA SEQRES 5 B 364 HIS LYS VAL ALA SER GLU ILE GLU VAL ALA ILE TRP HIS SEQRES 6 B 364 ASP GLU VAL VAL MSE HIS VAL PRO ILE GLU VAL ALA GLU SEQRES 7 B 364 ARG ALA ARG ALA VAL ALA THR ASP ASN GLU ILE ASP LEU SEQRES 8 B 364 LEU VAL CYS VAL GLY GLY GLY SER THR ILE GLY LEU ALA SEQRES 9 B 364 LYS ALA ILE ALA MSE THR THR ALA LEU PRO ILE VAL ALA SEQRES 10 B 364 ILE PRO THR THR TYR ALA GLY SER GLU ALA THR ASN VAL SEQRES 11 B 364 TRP GLY LEU THR GLU ALA ALA ARG LYS THR THR GLY VAL SEQRES 12 B 364 ASP LEU LYS VAL LEU PRO GLU THR VAL ILE TYR ASP SER SEQRES 13 B 364 GLU LEU THR MSE SER LEU PRO VAL GLU MSE SER VAL ALA SEQRES 14 B 364 SER GLY LEU ASN GLY LEU ALA HIS CYS ILE ASP SER LEU SEQRES 15 B 364 TRP GLY PRO ASN ALA ASP PRO ILE ASN ALA VAL LEU ALA SEQRES 16 B 364 ALA GLU GLY ILE ARG ALA LEU ASN GLN GLY LEU PRO LYS SEQRES 17 B 364 ILE VAL ALA ASN PRO HIS SER ILE GLU GLY ARG ASP GLU SEQRES 18 B 364 ALA LEU TYR GLY ALA TYR LEU ALA ALA VAL SER PHE ALA SEQRES 19 B 364 SER ALA GLY SER GLY LEU HIS HIS LYS ILE CYS HIS THR SEQRES 20 B 364 LEU GLY GLY THR PHE ASN LEU PRO HIS ALA GLN THR HIS SEQRES 21 B 364 ALA THR VAL LEU PRO TYR VAL LEU ALA PHE ASN ALA GLY SEQRES 22 B 364 ASP ALA PRO GLU ALA GLU ARG ARG ALA ALA ALA ALA PHE SEQRES 23 B 364 GLY THR ASP THR ALA LEU GLU GLY LEU GLN ARG LEU ARG SEQRES 24 B 364 LEU SER VAL ASN ALA PRO LYS ARG LEU SER ASP TYR GLY SEQRES 25 B 364 PHE GLU ALA SER GLY ILE ALA GLU ALA VAL ASP VAL THR SEQRES 26 B 364 LEU GLU LYS VAL PRO ALA ASN ASN PRO ARG PRO VAL THR SEQRES 27 B 364 ARG GLU ASN LEU SER ARG LEU LEU GLU ALA ALA LEU ASN SEQRES 28 B 364 GLY GLU ASP PRO ALA VAL LEU SER ALA VAL LEU SER ASN MODRES 3IV7 MSE A 17 MET SELENOMETHIONINE MODRES 3IV7 MSE A 40 MET SELENOMETHIONINE MODRES 3IV7 MSE A 48 MET SELENOMETHIONINE MODRES 3IV7 MSE A 69 MET SELENOMETHIONINE MODRES 3IV7 MSE A 108 MET SELENOMETHIONINE MODRES 3IV7 MSE A 159 MET SELENOMETHIONINE MODRES 3IV7 MSE A 165 MET SELENOMETHIONINE MODRES 3IV7 MSE B 17 MET SELENOMETHIONINE MODRES 3IV7 MSE B 40 MET SELENOMETHIONINE MODRES 3IV7 MSE B 48 MET SELENOMETHIONINE MODRES 3IV7 MSE B 69 MET SELENOMETHIONINE MODRES 3IV7 MSE B 108 MET SELENOMETHIONINE MODRES 3IV7 MSE B 159 MET SELENOMETHIONINE MODRES 3IV7 MSE B 165 MET SELENOMETHIONINE HET MSE A 17 8 HET MSE A 40 8 HET MSE A 48 8 HET MSE A 69 13 HET MSE A 108 8 HET MSE A 159 8 HET MSE A 165 8 HET MSE B 17 8 HET MSE B 40 8 HET MSE B 48 8 HET MSE B 69 13 HET MSE B 108 8 HET MSE B 159 8 HET MSE B 165 8 HET EDO A 364 4 HET EDO A 365 4 HET EDO B 364 4 HET PEG B 365 7 HETNAM MSE SELENOMETHIONINE HETNAM EDO 1,2-ETHANEDIOL HETNAM PEG DI(HYDROXYETHYL)ETHER HETSYN EDO ETHYLENE GLYCOL FORMUL 1 MSE 14(C5 H11 N O2 SE) FORMUL 3 EDO 3(C2 H6 O2) FORMUL 6 PEG C4 H10 O3 FORMUL 7 HOH *397(H2 O) HELIX 1 1 LYS A 22 GLY A 35 1 14 HELIX 2 2 GLY A 44 ARG A 46 5 3 HELIX 3 3 GLU A 47 ALA A 55 1 9 HELIX 4 4 PRO A 72 ASN A 86 1 15 HELIX 5 5 GLY A 96 ALA A 111 1 16 HELIX 6 6 GLY A 123 THR A 127 5 5 HELIX 7 7 LEU A 144 LEU A 147 5 4 HELIX 8 8 ASP A 154 MSE A 159 5 6 HELIX 9 9 PRO A 162 LEU A 181 1 20 HELIX 10 10 ASP A 187 ASN A 211 1 25 HELIX 11 11 SER A 214 GLY A 236 1 23 HELIX 12 12 GLY A 238 THR A 250 1 13 HELIX 13 13 PRO A 254 ALA A 271 1 18 HELIX 14 14 ALA A 274 GLY A 286 1 13 HELIX 15 15 THR A 289 VAL A 301 1 13 HELIX 16 16 ARG A 306 GLY A 311 5 6 HELIX 17 17 GLU A 313 SER A 315 5 3 HELIX 18 18 GLY A 316 GLU A 326 1 11 HELIX 19 19 THR A 337 GLY A 351 1 15 HELIX 20 20 ASP A 353 SER A 358 5 6 HELIX 21 21 LYS B 22 GLY B 35 1 14 HELIX 22 22 GLU B 47 ALA B 55 1 9 HELIX 23 23 SER B 56 ILE B 58 5 3 HELIX 24 24 PRO B 72 ASN B 86 1 15 HELIX 25 25 GLY B 96 ALA B 111 1 16 HELIX 26 26 GLY B 123 THR B 127 5 5 HELIX 27 27 LEU B 144 LEU B 147 5 4 HELIX 28 28 ASP B 154 MSE B 159 5 6 HELIX 29 29 PRO B 162 LEU B 181 1 20 HELIX 30 30 ASP B 187 ASN B 211 1 25 HELIX 31 31 SER B 214 GLY B 236 1 23 HELIX 32 32 GLY B 238 THR B 250 1 13 HELIX 33 33 PRO B 254 GLY B 272 1 19 HELIX 34 34 ALA B 274 GLY B 286 1 13 HELIX 35 35 THR B 289 ASN B 302 1 14 HELIX 36 36 ARG B 306 GLY B 311 5 6 HELIX 37 37 GLU B 313 SER B 315 5 3 HELIX 38 38 GLY B 316 GLU B 326 1 11 HELIX 39 39 THR B 337 GLY B 351 1 15 HELIX 40 40 ASP B 353 SER B 358 5 6 SHEET 1 A 7 ALA A 6 THR A 11 0 SHEET 2 A 7 GLN B 14 GLY B 19 -1 O PHE B 18 N PHE A 7 SHEET 3 A 7 THR B 150 TYR B 153 1 O VAL B 151 N MSE B 17 SHEET 4 A 7 ILE B 114 PRO B 118 1 N ALA B 116 O ILE B 152 SHEET 5 A 7 LEU B 90 GLY B 95 1 N CYS B 93 O ILE B 117 SHEET 6 A 7 VAL B 39 ILE B 42 1 N ILE B 42 O VAL B 92 SHEET 7 A 7 ILE B 62 HIS B 64 1 O ILE B 62 N VAL B 41 SHEET 1 B 7 ILE A 62 HIS A 64 0 SHEET 2 B 7 VAL A 39 ILE A 42 1 N VAL A 41 O HIS A 64 SHEET 3 B 7 LEU A 90 GLY A 95 1 O VAL A 92 N ILE A 42 SHEET 4 B 7 ILE A 114 PRO A 118 1 O VAL A 115 N LEU A 91 SHEET 5 B 7 THR A 150 TYR A 153 1 O THR A 150 N ALA A 116 SHEET 6 B 7 GLN A 14 GLY A 19 1 N MSE A 17 O TYR A 153 SHEET 7 B 7 ALA B 6 THR B 11 -1 O HIS B 9 N VAL A 16 SHEET 1 C 2 VAL A 129 GLU A 134 0 SHEET 2 C 2 ARG A 137 VAL A 142 -1 O ARG A 137 N GLU A 134 SHEET 1 D 2 VAL B 129 GLU B 134 0 SHEET 2 D 2 ARG B 137 VAL B 142 -1 O THR B 139 N LEU B 132 LINK C VAL A 16 N MSE A 17 1555 1555 1.32 LINK C MSE A 17 N PHE A 18 1555 1555 1.33 LINK C VAL A 39 N MSE A 40 1555 1555 1.32 LINK C MSE A 40 N VAL A 41 1555 1555 1.33 LINK C GLU A 47 N MSE A 48 1555 1555 1.33 LINK C MSE A 48 N SER A 49 1555 1555 1.33 LINK C VAL A 68 N MSE A 69 1555 1555 1.32 LINK C MSE A 69 N HIS A 70 1555 1555 1.32 LINK C ALA A 107 N MSE A 108 1555 1555 1.33 LINK C MSE A 108 N THR A 109 1555 1555 1.33 LINK C THR A 158 N MSE A 159 1555 1555 1.34 LINK C MSE A 159 N SER A 160 1555 1555 1.32 LINK C GLU A 164 N MSE A 165 1555 1555 1.33 LINK C MSE A 165 N SER A 166 1555 1555 1.34 LINK C VAL B 16 N MSE B 17 1555 1555 1.34 LINK C MSE B 17 N PHE B 18 1555 1555 1.32 LINK C VAL B 39 N MSE B 40 1555 1555 1.33 LINK C MSE B 40 N VAL B 41 1555 1555 1.34 LINK C GLU B 47 N MSE B 48 1555 1555 1.32 LINK C MSE B 48 N SER B 49 1555 1555 1.33 LINK C VAL B 68 N MSE B 69 1555 1555 1.33 LINK C MSE B 69 N HIS B 70 1555 1555 1.33 LINK C ALA B 107 N MSE B 108 1555 1555 1.34 LINK C MSE B 108 N THR B 109 1555 1555 1.33 LINK C THR B 158 N MSE B 159 1555 1555 1.33 LINK C MSE B 159 N SER B 160 1555 1555 1.33 LINK C GLU B 164 N MSE B 165 1555 1555 1.33 LINK C MSE B 165 N SER B 166 1555 1555 1.34 SITE 1 AC1 5 GLU A 276 ALA A 277 ARG A 280 HOH A 500 SITE 2 AC1 5 HOH A 592 SITE 1 AC2 9 GLU A 32 ARG A 33 GLY A 35 ALA A 314 SITE 2 AC2 9 ILE A 317 SER A 342 GLU A 346 HOH A 439 SITE 3 AC2 9 HOH A 526 SITE 1 AC3 6 ILE A 189 HOH A 377 THR B 11 ILE B 189 SITE 2 AC3 6 LEU B 193 HOH B 403 SITE 1 AC4 8 LEU B 181 ALA B 191 GLU B 276 ALA B 277 SITE 2 AC4 8 ARG B 280 HOH B 382 HOH B 383 HOH B 500 CRYST1 58.728 79.003 160.185 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017028 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012658 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006243 0.00000