data_3IVB # _entry.id 3IVB # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.281 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 3IVB RCSB RCSB054909 WWPDB D_1000054909 # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3IVB _pdbx_database_status.recvd_initial_deposition_date 2009-08-31 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Schulman, B.A.' 1 'Miller, D.J.' 2 'Calabrese, M.F.' 3 'Seyedin, S.' 4 # _citation.id primary _citation.title 'Structure 9' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Zhuang, M.' 1 primary 'Calabrese, M.F.' 2 primary 'Liu, J.' 3 primary 'Waddell, M.B.' 4 primary 'Nourse, A.' 5 primary 'Hammel, M.' 6 primary 'Miller, D.J.' 7 primary 'Walden, H.' 8 primary 'Duda, D.M.' 9 primary 'Steven, S.' 10 primary 'Hoggard, T.' 11 primary 'Harper, J.W.' 12 primary 'White, K.P.' 13 primary 'Schulman, B.A.' 14 # _cell.entry_id 3IVB _cell.length_a 44.021 _cell.length_b 44.021 _cell.length_c 266.840 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3IVB _symmetry.space_group_name_H-M 'P 65 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Speckle-type POZ protein' 16543.967 1 ? ? 'UNP residues 28-166' ? 2 polymer syn 'Core histone macro-H2A.1' 1422.429 1 ? ? ? ? 3 non-polymer syn 'ZINC ION' 65.409 5 ? ? ? ? 4 non-polymer syn 'CHLORIDE ION' 35.453 1 ? ? ? ? 5 water nat water 18.015 96 ? ? ? ? # loop_ _entity_name_com.entity_id _entity_name_com.name 1 'HIB homolog 1, Roadkill homolog 1' 2 'Histone macroH2A1, mH2A1, H2A.y, H2A/y, Medulloblastoma antigen MU-MB-50.205' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;GSGGSGKVVKFSYMWTINNFSFCREEMGEVIKSSTFSSGANDKLKWCLRVNPKGLDEESKDYLSLYLLLVSCPKSEVRAK FKFSILNAKGEETKAMESQRAYRFVQGKDWGFKKFIRRDFLLDEANGLLPDDKLTLFCEVSVVQD ; ;GSGGSGKVVKFSYMWTINNFSFCREEMGEVIKSSTFSSGANDKLKWCLRVNPKGLDEESKDYLSLYLLLVSCPKSEVRAK FKFSILNAKGEETKAMESQRAYRFVQGKDWGFKKFIRRDFLLDEANGLLPDDKLTLFCEVSVVQD ; A ? 2 'polypeptide(L)' no no KAASADSTTEGTPAD KAASADSTTEGTPAD M ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 GLY n 1 4 GLY n 1 5 SER n 1 6 GLY n 1 7 LYS n 1 8 VAL n 1 9 VAL n 1 10 LYS n 1 11 PHE n 1 12 SER n 1 13 TYR n 1 14 MET n 1 15 TRP n 1 16 THR n 1 17 ILE n 1 18 ASN n 1 19 ASN n 1 20 PHE n 1 21 SER n 1 22 PHE n 1 23 CYS n 1 24 ARG n 1 25 GLU n 1 26 GLU n 1 27 MET n 1 28 GLY n 1 29 GLU n 1 30 VAL n 1 31 ILE n 1 32 LYS n 1 33 SER n 1 34 SER n 1 35 THR n 1 36 PHE n 1 37 SER n 1 38 SER n 1 39 GLY n 1 40 ALA n 1 41 ASN n 1 42 ASP n 1 43 LYS n 1 44 LEU n 1 45 LYS n 1 46 TRP n 1 47 CYS n 1 48 LEU n 1 49 ARG n 1 50 VAL n 1 51 ASN n 1 52 PRO n 1 53 LYS n 1 54 GLY n 1 55 LEU n 1 56 ASP n 1 57 GLU n 1 58 GLU n 1 59 SER n 1 60 LYS n 1 61 ASP n 1 62 TYR n 1 63 LEU n 1 64 SER n 1 65 LEU n 1 66 TYR n 1 67 LEU n 1 68 LEU n 1 69 LEU n 1 70 VAL n 1 71 SER n 1 72 CYS n 1 73 PRO n 1 74 LYS n 1 75 SER n 1 76 GLU n 1 77 VAL n 1 78 ARG n 1 79 ALA n 1 80 LYS n 1 81 PHE n 1 82 LYS n 1 83 PHE n 1 84 SER n 1 85 ILE n 1 86 LEU n 1 87 ASN n 1 88 ALA n 1 89 LYS n 1 90 GLY n 1 91 GLU n 1 92 GLU n 1 93 THR n 1 94 LYS n 1 95 ALA n 1 96 MET n 1 97 GLU n 1 98 SER n 1 99 GLN n 1 100 ARG n 1 101 ALA n 1 102 TYR n 1 103 ARG n 1 104 PHE n 1 105 VAL n 1 106 GLN n 1 107 GLY n 1 108 LYS n 1 109 ASP n 1 110 TRP n 1 111 GLY n 1 112 PHE n 1 113 LYS n 1 114 LYS n 1 115 PHE n 1 116 ILE n 1 117 ARG n 1 118 ARG n 1 119 ASP n 1 120 PHE n 1 121 LEU n 1 122 LEU n 1 123 ASP n 1 124 GLU n 1 125 ALA n 1 126 ASN n 1 127 GLY n 1 128 LEU n 1 129 LEU n 1 130 PRO n 1 131 ASP n 1 132 ASP n 1 133 LYS n 1 134 LEU n 1 135 THR n 1 136 LEU n 1 137 PHE n 1 138 CYS n 1 139 GLU n 1 140 VAL n 1 141 SER n 1 142 VAL n 1 143 VAL n 1 144 GLN n 1 145 ASP n 2 1 LYS n 2 2 ALA n 2 3 ALA n 2 4 SER n 2 5 ALA n 2 6 ASP n 2 7 SER n 2 8 THR n 2 9 THR n 2 10 GLU n 2 11 GLY n 2 12 THR n 2 13 PRO n 2 14 ALA n 2 15 ASP n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene SPOP _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP SPOP_HUMAN O43791 1 ;KVVKFSYMWTINNFSFCREEMGEVIKSSTFSSGANDKLKWCLRVNPKGLDEESKDYLSLYLLLVSCPKSEVRAKFKFSIL NAKGEETKAMESQRAYRFVQGKDWGFKKFIRRDFLLDEANGLLPDDKLTLFCEVSVVQD ; 28 ? 2 UNP H2AY_HUMAN O75367 2 KAASADSTTEGTPAD 167 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3IVB A 7 ? 145 ? O43791 28 ? 166 ? 28 166 2 2 3IVB M 1 ? 15 ? O75367 167 ? 181 ? 166 180 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3IVB GLY A 1 ? UNP O43791 ? ? 'EXPRESSION TAG' 22 1 1 3IVB SER A 2 ? UNP O43791 ? ? 'EXPRESSION TAG' 23 2 1 3IVB GLY A 3 ? UNP O43791 ? ? 'EXPRESSION TAG' 24 3 1 3IVB GLY A 4 ? UNP O43791 ? ? 'EXPRESSION TAG' 25 4 1 3IVB SER A 5 ? UNP O43791 ? ? 'EXPRESSION TAG' 26 5 1 3IVB GLY A 6 ? UNP O43791 ? ? 'EXPRESSION TAG' 27 6 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CL non-polymer . 'CHLORIDE ION' ? 'Cl -1' 35.453 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 ZN non-polymer . 'ZINC ION' ? 'Zn 2' 65.409 # _exptl.entry_id 3IVB _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.08 _exptl_crystal.density_percent_sol 40.78 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.6 _exptl_crystal_grow.pdbx_details '10-20% PEG3350, 0.1 M Tris pH 7.6, 50 mM zinc acetate. Cryoprotection 30% PEG400, VAPOR DIFFUSION, HANGING DROP, temperature 298K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.pdbx_collection_date 2009-07-18 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9794 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 24-ID-C' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 24-ID-C _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.9794 # _reflns.entry_id 3IVB _reflns.observed_criterion_sigma_I 0 _reflns.observed_criterion_sigma_F -3 _reflns.d_resolution_low 50 _reflns.d_resolution_high 1.75 _reflns.number_obs 16414 _reflns.number_all 16750 _reflns.percent_possible_obs 98.0 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 1.75 _reflns_shell.d_res_low 1.81 _reflns_shell.percent_possible_all 97.4 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 3IVB _refine.ls_number_reflns_obs 15566 _refine.ls_number_reflns_all 15566 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 37.74 _refine.ls_d_res_high 1.75 _refine.ls_percent_reflns_obs 98.61 _refine.ls_R_factor_obs 0.21964 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.21827 _refine.ls_R_factor_R_free 0.24729 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.1 _refine.ls_number_reflns_R_free 828 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.934 _refine.correlation_coeff_Fo_to_Fc_free 0.930 _refine.B_iso_mean 16.752 _refine.aniso_B[1][1] 0.01 _refine.aniso_B[2][2] 0.01 _refine.aniso_B[3][3] -0.01 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.229 _refine.pdbx_overall_ESU_R_Free 0.128 _refine.overall_SU_ML 0.083 _refine.overall_SU_B 5.697 _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1205 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 6 _refine_hist.number_atoms_solvent 96 _refine_hist.number_atoms_total 1307 _refine_hist.d_res_high 1.75 _refine_hist.d_res_low 37.74 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.009 0.022 ? 1232 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.249 1.961 ? 1663 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 6.470 5.000 ? 155 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 34.965 23.684 ? 57 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 14.350 15.000 ? 227 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 20.457 15.000 ? 9 'X-RAY DIFFRACTION' ? r_chiral_restr 0.084 0.200 ? 183 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.005 0.020 ? 920 'X-RAY DIFFRACTION' ? r_nbd_refined 0.215 0.200 ? 541 'X-RAY DIFFRACTION' ? r_nbtor_refined 0.308 0.200 ? 844 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.234 0.200 ? 93 'X-RAY DIFFRACTION' ? r_metal_ion_refined 0.189 0.200 ? 2 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.182 0.200 ? 63 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.137 0.200 ? 24 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined 0.199 0.200 ? 4 'X-RAY DIFFRACTION' ? r_mcbond_it 1.133 1.500 ? 768 'X-RAY DIFFRACTION' ? r_mcangle_it 1.640 2.000 ? 1204 'X-RAY DIFFRACTION' ? r_scbond_it 2.984 3.000 ? 529 'X-RAY DIFFRACTION' ? r_scangle_it 3.334 4.500 ? 454 'X-RAY DIFFRACTION' ? r_rigid_bond_restr 3.034 3.000 ? 1297 'X-RAY DIFFRACTION' ? r_sphericity_free 4.916 3.000 ? 102 'X-RAY DIFFRACTION' ? r_sphericity_bonded 1.988 3.000 ? 1205 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.75 _refine_ls_shell.d_res_low 1.797 _refine_ls_shell.number_reflns_R_work 1070 _refine_ls_shell.R_factor_R_work 0.253 _refine_ls_shell.percent_reflns_obs 96.74 _refine_ls_shell.R_factor_R_free 0.282 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 57 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3IVB _struct.title 'Structures of SPOP-Substrate Complexes: Insights into Architectures of BTB-Cul3 Ubiquitin Ligases: SPOPMATH-MacroH2ASBCpep1' _struct.pdbx_descriptor 'Speckle-type POZ protein, Core histone macro-H2A.1' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3IVB _struct_keywords.pdbx_keywords 'protein binding, ligase' _struct_keywords.text ;Protein Binding/Hydrolase, Nucleus, Ubl conjugation pathway, Alternative splicing, Chromatin regulator, Chromosomal protein, DNA-binding, Isopeptide bond, Methylation, Nucleosome core, Phosphoprotein, Ubl conjugation, protein binding, ligase ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 3 ? F N N 3 ? G N N 3 ? H N N 4 ? I N N 5 ? J N N 5 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 CYS A 23 ? GLY A 28 ? CYS A 44 GLY A 49 1 ? 6 HELX_P HELX_P2 2 ASP A 56 ? LYS A 60 ? ASP A 77 LYS A 81 5 ? 5 HELX_P HELX_P3 3 ARG A 118 ? ASP A 123 ? ARG A 139 ASP A 144 1 ? 6 HELX_P HELX_P4 4 GLU A 124 ? GLY A 127 ? GLU A 145 GLY A 148 5 ? 4 HELX_P HELX_P5 5 LEU A 129 ? LYS A 133 ? LEU A 150 LYS A 154 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc1 metalc ? ? A CYS 23 SG ? ? ? 1_555 C ZN . ZN ? ? A CYS 44 A ZN 1 1_555 ? ? ? ? ? ? ? 2.253 ? metalc2 metalc ? ? A CYS 23 SG ? ? ? 1_555 F ZN . ZN ? ? A CYS 44 A ZN 4 1_555 ? ? ? ? ? ? ? 2.321 ? metalc3 metalc ? ? A GLU 25 OE2 ? ? ? 1_555 G ZN . ZN ? ? A GLU 46 A ZN 5 1_555 ? ? ? ? ? ? ? 2.265 ? metalc4 metalc ? ? A GLU 26 OE2 ? ? ? 1_555 C ZN . ZN ? ? A GLU 47 A ZN 1 1_555 ? ? ? ? ? ? ? 2.095 ? metalc5 metalc ? ? A GLU 76 OE1 ? ? ? 1_555 E ZN . ZN ? ? A GLU 97 A ZN 3 1_555 ? ? ? ? ? ? ? 2.068 ? metalc6 metalc ? ? A GLU 92 OE1 ? ? ? 1_555 D ZN . ZN ? ? A GLU 113 A ZN 2 1_555 ? ? ? ? ? ? ? 2.002 ? metalc7 metalc ? ? C ZN . ZN ? ? ? 1_555 I HOH . O ? ? A ZN 1 A HOH 226 1_555 ? ? ? ? ? ? ? 2.140 ? metalc8 metalc ? ? D ZN . ZN ? ? ? 1_555 I HOH . O ? ? A ZN 2 A HOH 237 1_555 ? ? ? ? ? ? ? 1.754 ? metalc9 metalc ? ? E ZN . ZN ? ? ? 1_555 I HOH . O ? ? A ZN 3 A HOH 12 1_555 ? ? ? ? ? ? ? 2.286 ? metalc10 metalc ? ? G ZN . ZN ? ? ? 1_555 I HOH . O ? ? A ZN 5 A HOH 218 1_555 ? ? ? ? ? ? ? 2.282 ? metalc11 metalc ? ? G ZN . ZN ? ? ? 1_555 I HOH . O ? ? A ZN 5 A HOH 225 1_555 ? ? ? ? ? ? ? 2.388 ? # _struct_conn_type.id metalc _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 4 ? B ? 4 ? C ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel C 1 2 ? anti-parallel C 2 3 ? anti-parallel C 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 VAL A 9 ? ILE A 17 ? VAL A 30 ILE A 38 A 2 LEU A 134 ? VAL A 142 ? LEU A 155 VAL A 163 A 3 VAL A 77 ? LEU A 86 ? VAL A 98 LEU A 107 A 4 GLU A 92 ? GLU A 97 ? GLU A 113 GLU A 118 B 1 VAL A 9 ? ILE A 17 ? VAL A 30 ILE A 38 B 2 LEU A 134 ? VAL A 142 ? LEU A 155 VAL A 163 B 3 VAL A 77 ? LEU A 86 ? VAL A 98 LEU A 107 B 4 TYR A 102 ? PHE A 104 ? TYR A 123 PHE A 125 C 1 ILE A 31 ? LYS A 32 ? ILE A 52 LYS A 53 C 2 TRP A 46 ? ASN A 51 ? TRP A 67 ASN A 72 C 3 TYR A 62 ? LEU A 69 ? TYR A 83 LEU A 90 C 4 ASP A 109 ? ARG A 117 ? ASP A 130 ARG A 138 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N ILE A 17 ? N ILE A 38 O LEU A 134 ? O LEU A 155 A 2 3 O SER A 141 ? O SER A 162 N LYS A 80 ? N LYS A 101 A 3 4 N PHE A 83 ? N PHE A 104 O MET A 96 ? O MET A 117 B 1 2 N ILE A 17 ? N ILE A 38 O LEU A 134 ? O LEU A 155 B 2 3 O SER A 141 ? O SER A 162 N LYS A 80 ? N LYS A 101 B 3 4 N ALA A 79 ? N ALA A 100 O TYR A 102 ? O TYR A 123 C 1 2 N ILE A 31 ? N ILE A 52 O VAL A 50 ? O VAL A 71 C 2 3 N CYS A 47 ? N CYS A 68 O LEU A 68 ? O LEU A 89 C 3 4 N LEU A 67 ? N LEU A 88 O TRP A 110 ? O TRP A 131 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 6 'BINDING SITE FOR RESIDUE ZN A 1' AC2 Software ? ? ? ? 6 'BINDING SITE FOR RESIDUE ZN A 2' AC3 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE ZN A 3' AC4 Software ? ? ? ? 6 'BINDING SITE FOR RESIDUE ZN A 4' AC5 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE ZN A 5' AC6 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE CL A 167' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 ZN F . ? ZN A 4 . ? 1_555 ? 2 AC1 6 CYS A 23 ? CYS A 44 . ? 1_555 ? 3 AC1 6 GLU A 26 ? GLU A 47 . ? 1_555 ? 4 AC1 6 ASP A 132 ? ASP A 153 . ? 8_555 ? 5 AC1 6 HOH I . ? HOH A 217 . ? 1_555 ? 6 AC1 6 HOH I . ? HOH A 226 . ? 1_555 ? 7 AC2 6 GLU A 92 ? GLU A 113 . ? 1_555 ? 8 AC2 6 GLU A 139 ? GLU A 160 . ? 1_555 ? 9 AC2 6 GLU A 139 ? GLU A 160 . ? 12_544 ? 10 AC2 6 HOH I . ? HOH A 237 . ? 12_544 ? 11 AC2 6 HOH I . ? HOH A 237 . ? 1_555 ? 12 AC2 6 HOH I . ? HOH A 238 . ? 12_544 ? 13 AC3 4 HOH I . ? HOH A 12 . ? 1_555 ? 14 AC3 4 GLU A 76 ? GLU A 97 . ? 1_555 ? 15 AC3 4 ASP A 131 ? ASP A 152 . ? 1_545 ? 16 AC3 4 HOH I . ? HOH A 173 . ? 1_545 ? 17 AC4 6 ZN C . ? ZN A 1 . ? 1_555 ? 18 AC4 6 HOH I . ? HOH A 8 . ? 1_555 ? 19 AC4 6 CYS A 23 ? CYS A 44 . ? 1_555 ? 20 AC4 6 ASP A 132 ? ASP A 153 . ? 8_555 ? 21 AC4 6 HOH I . ? HOH A 218 . ? 1_555 ? 22 AC4 6 HOH I . ? HOH A 240 . ? 1_555 ? 23 AC5 4 GLU A 25 ? GLU A 46 . ? 1_555 ? 24 AC5 4 GLU A 124 ? GLU A 145 . ? 8_555 ? 25 AC5 4 HOH I . ? HOH A 218 . ? 1_555 ? 26 AC5 4 HOH I . ? HOH A 225 . ? 1_555 ? 27 AC6 4 GLN A 99 ? GLN A 120 . ? 1_555 ? 28 AC6 4 TYR A 102 ? TYR A 123 . ? 1_555 ? 29 AC6 4 HOH I . ? HOH A 227 . ? 1_555 ? 30 AC6 4 ALA B 5 ? ALA M 170 . ? 1_555 ? # _database_PDB_matrix.entry_id 3IVB _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3IVB _atom_sites.fract_transf_matrix[1][1] 0.022716 _atom_sites.fract_transf_matrix[1][2] 0.013115 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.026231 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.003748 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CL N O S ZN # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 22 ? ? ? A . n A 1 2 SER 2 23 ? ? ? A . n A 1 3 GLY 3 24 ? ? ? A . n A 1 4 GLY 4 25 ? ? ? A . n A 1 5 SER 5 26 ? ? ? A . n A 1 6 GLY 6 27 ? ? ? A . n A 1 7 LYS 7 28 28 LYS ALA A . n A 1 8 VAL 8 29 29 VAL VAL A . n A 1 9 VAL 9 30 30 VAL VAL A . n A 1 10 LYS 10 31 31 LYS LYS A . n A 1 11 PHE 11 32 32 PHE PHE A . n A 1 12 SER 12 33 33 SER SER A . n A 1 13 TYR 13 34 34 TYR TYR A . n A 1 14 MET 14 35 35 MET MET A . n A 1 15 TRP 15 36 36 TRP TRP A . n A 1 16 THR 16 37 37 THR THR A . n A 1 17 ILE 17 38 38 ILE ILE A . n A 1 18 ASN 18 39 39 ASN ASN A . n A 1 19 ASN 19 40 40 ASN ASN A . n A 1 20 PHE 20 41 41 PHE PHE A . n A 1 21 SER 21 42 42 SER SER A . n A 1 22 PHE 22 43 43 PHE PHE A . n A 1 23 CYS 23 44 44 CYS CYS A . n A 1 24 ARG 24 45 45 ARG ARG A . n A 1 25 GLU 25 46 46 GLU GLU A . n A 1 26 GLU 26 47 47 GLU GLU A . n A 1 27 MET 27 48 48 MET MET A . n A 1 28 GLY 28 49 49 GLY GLY A . n A 1 29 GLU 29 50 50 GLU GLU A . n A 1 30 VAL 30 51 51 VAL VAL A . n A 1 31 ILE 31 52 52 ILE ILE A . n A 1 32 LYS 32 53 53 LYS LYS A . n A 1 33 SER 33 54 54 SER SER A . n A 1 34 SER 34 55 55 SER SER A . n A 1 35 THR 35 56 56 THR THR A . n A 1 36 PHE 36 57 57 PHE PHE A . n A 1 37 SER 37 58 58 SER SER A . n A 1 38 SER 38 59 59 SER SER A . n A 1 39 GLY 39 60 60 GLY GLY A . n A 1 40 ALA 40 61 61 ALA ALA A . n A 1 41 ASN 41 62 62 ASN ASN A . n A 1 42 ASP 42 63 63 ASP ASP A . n A 1 43 LYS 43 64 64 LYS ALA A . n A 1 44 LEU 44 65 65 LEU LEU A . n A 1 45 LYS 45 66 66 LYS LYS A . n A 1 46 TRP 46 67 67 TRP TRP A . n A 1 47 CYS 47 68 68 CYS CYS A . n A 1 48 LEU 48 69 69 LEU LEU A . n A 1 49 ARG 49 70 70 ARG ARG A . n A 1 50 VAL 50 71 71 VAL VAL A . n A 1 51 ASN 51 72 72 ASN ASN A . n A 1 52 PRO 52 73 73 PRO PRO A . n A 1 53 LYS 53 74 74 LYS LYS A . n A 1 54 GLY 54 75 75 GLY GLY A . n A 1 55 LEU 55 76 76 LEU LEU A . n A 1 56 ASP 56 77 77 ASP ASP A . n A 1 57 GLU 57 78 78 GLU GLU A . n A 1 58 GLU 58 79 79 GLU GLU A . n A 1 59 SER 59 80 80 SER SER A . n A 1 60 LYS 60 81 81 LYS LYS A . n A 1 61 ASP 61 82 82 ASP ASP A . n A 1 62 TYR 62 83 83 TYR TYR A . n A 1 63 LEU 63 84 84 LEU LEU A . n A 1 64 SER 64 85 85 SER SER A . n A 1 65 LEU 65 86 86 LEU LEU A . n A 1 66 TYR 66 87 87 TYR TYR A . n A 1 67 LEU 67 88 88 LEU LEU A . n A 1 68 LEU 68 89 89 LEU LEU A . n A 1 69 LEU 69 90 90 LEU LEU A . n A 1 70 VAL 70 91 91 VAL VAL A . n A 1 71 SER 71 92 92 SER SER A . n A 1 72 CYS 72 93 93 CYS CYS A . n A 1 73 PRO 73 94 94 PRO PRO A . n A 1 74 LYS 74 95 95 LYS LYS A . n A 1 75 SER 75 96 ? ? ? A . n A 1 76 GLU 76 97 97 GLU GLU A . n A 1 77 VAL 77 98 98 VAL VAL A . n A 1 78 ARG 78 99 99 ARG ARG A . n A 1 79 ALA 79 100 100 ALA ALA A . n A 1 80 LYS 80 101 101 LYS LYS A . n A 1 81 PHE 81 102 102 PHE PHE A . n A 1 82 LYS 82 103 103 LYS LYS A . n A 1 83 PHE 83 104 104 PHE PHE A . n A 1 84 SER 84 105 105 SER SER A . n A 1 85 ILE 85 106 106 ILE ILE A . n A 1 86 LEU 86 107 107 LEU LEU A . n A 1 87 ASN 87 108 108 ASN ASN A . n A 1 88 ALA 88 109 109 ALA ALA A . n A 1 89 LYS 89 110 110 LYS LYS A . n A 1 90 GLY 90 111 111 GLY GLY A . n A 1 91 GLU 91 112 112 GLU GLU A . n A 1 92 GLU 92 113 113 GLU GLU A . n A 1 93 THR 93 114 114 THR THR A . n A 1 94 LYS 94 115 115 LYS LYS A . n A 1 95 ALA 95 116 116 ALA ALA A . n A 1 96 MET 96 117 117 MET MET A . n A 1 97 GLU 97 118 118 GLU GLU A . n A 1 98 SER 98 119 119 SER SER A . n A 1 99 GLN 99 120 120 GLN GLN A . n A 1 100 ARG 100 121 121 ARG ARG A . n A 1 101 ALA 101 122 122 ALA ALA A . n A 1 102 TYR 102 123 123 TYR TYR A . n A 1 103 ARG 103 124 124 ARG ARG A . n A 1 104 PHE 104 125 125 PHE PHE A . n A 1 105 VAL 105 126 126 VAL VAL A . n A 1 106 GLN 106 127 127 GLN GLN A . n A 1 107 GLY 107 128 128 GLY GLY A . n A 1 108 LYS 108 129 129 LYS LYS A . n A 1 109 ASP 109 130 130 ASP ASP A . n A 1 110 TRP 110 131 131 TRP TRP A . n A 1 111 GLY 111 132 132 GLY GLY A . n A 1 112 PHE 112 133 133 PHE PHE A . n A 1 113 LYS 113 134 134 LYS LYS A . n A 1 114 LYS 114 135 135 LYS LYS A . n A 1 115 PHE 115 136 136 PHE PHE A . n A 1 116 ILE 116 137 137 ILE ILE A . n A 1 117 ARG 117 138 138 ARG ARG A . n A 1 118 ARG 118 139 139 ARG ARG A . n A 1 119 ASP 119 140 140 ASP ASP A . n A 1 120 PHE 120 141 141 PHE PHE A . n A 1 121 LEU 121 142 142 LEU LEU A . n A 1 122 LEU 122 143 143 LEU LEU A . n A 1 123 ASP 123 144 144 ASP ASP A . n A 1 124 GLU 124 145 145 GLU GLU A . n A 1 125 ALA 125 146 146 ALA ALA A . n A 1 126 ASN 126 147 147 ASN ASN A . n A 1 127 GLY 127 148 148 GLY GLY A . n A 1 128 LEU 128 149 149 LEU LEU A . n A 1 129 LEU 129 150 150 LEU LEU A . n A 1 130 PRO 130 151 151 PRO PRO A . n A 1 131 ASP 131 152 152 ASP ASP A . n A 1 132 ASP 132 153 153 ASP ASP A . n A 1 133 LYS 133 154 154 LYS LYS A . n A 1 134 LEU 134 155 155 LEU LEU A . n A 1 135 THR 135 156 156 THR THR A . n A 1 136 LEU 136 157 157 LEU LEU A . n A 1 137 PHE 137 158 158 PHE PHE A . n A 1 138 CYS 138 159 159 CYS CYS A . n A 1 139 GLU 139 160 160 GLU GLU A . n A 1 140 VAL 140 161 161 VAL VAL A . n A 1 141 SER 141 162 162 SER SER A . n A 1 142 VAL 142 163 163 VAL VAL A . n A 1 143 VAL 143 164 164 VAL VAL A . n A 1 144 GLN 144 165 165 GLN ALA A . n A 1 145 ASP 145 166 ? ? ? A . n B 2 1 LYS 1 166 ? ? ? M . n B 2 2 ALA 2 167 ? ? ? M . n B 2 3 ALA 3 168 168 ALA ALA M . n B 2 4 SER 4 169 169 SER SER M . n B 2 5 ALA 5 170 170 ALA ALA M . n B 2 6 ASP 6 171 171 ASP ASP M . n B 2 7 SER 7 172 172 SER SER M . n B 2 8 THR 8 173 173 THR THR M . n B 2 9 THR 9 174 174 THR THR M . n B 2 10 GLU 10 175 175 GLU GLU M . n B 2 11 GLY 11 176 176 GLY GLY M . n B 2 12 THR 12 177 177 THR THR M . n B 2 13 PRO 13 178 178 PRO PRO M . n B 2 14 ALA 14 179 ? ? ? M . n B 2 15 ASP 15 180 ? ? ? M . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 SG ? A CYS 23 ? A CYS 44 ? 1_555 ZN ? C ZN . ? A ZN 1 ? 1_555 OE2 ? A GLU 26 ? A GLU 47 ? 1_555 106.1 ? 2 SG ? A CYS 23 ? A CYS 44 ? 1_555 ZN ? C ZN . ? A ZN 1 ? 1_555 O ? I HOH . ? A HOH 226 ? 1_555 117.8 ? 3 OE2 ? A GLU 26 ? A GLU 47 ? 1_555 ZN ? C ZN . ? A ZN 1 ? 1_555 O ? I HOH . ? A HOH 226 ? 1_555 106.9 ? 4 OE2 ? A GLU 25 ? A GLU 46 ? 1_555 ZN ? G ZN . ? A ZN 5 ? 1_555 O ? I HOH . ? A HOH 218 ? 1_555 120.4 ? 5 OE2 ? A GLU 25 ? A GLU 46 ? 1_555 ZN ? G ZN . ? A ZN 5 ? 1_555 O ? I HOH . ? A HOH 225 ? 1_555 122.7 ? 6 O ? I HOH . ? A HOH 218 ? 1_555 ZN ? G ZN . ? A ZN 5 ? 1_555 O ? I HOH . ? A HOH 225 ? 1_555 93.2 ? 7 OE1 ? A GLU 76 ? A GLU 97 ? 1_555 ZN ? E ZN . ? A ZN 3 ? 1_555 O ? I HOH . ? A HOH 12 ? 1_555 120.8 ? 8 OE1 ? A GLU 92 ? A GLU 113 ? 1_555 ZN ? D ZN . ? A ZN 2 ? 1_555 O ? I HOH . ? A HOH 237 ? 1_555 105.1 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2009-10-20 2 'Structure model' 1 1 2011-07-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Version format compliance' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal HKL-2000 'data collection' . ? 1 PHASER phasing . ? 2 REFMAC refinement 5.2.0019 ? 3 HKL-2000 'data reduction' . ? 4 HKL-2000 'data scaling' . ? 5 # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id LYS _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 135 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi -113.79 _pdbx_validate_torsion.psi 62.11 # _pdbx_validate_peptide_omega.id 1 _pdbx_validate_peptide_omega.PDB_model_num 1 _pdbx_validate_peptide_omega.auth_comp_id_1 THR _pdbx_validate_peptide_omega.auth_asym_id_1 M _pdbx_validate_peptide_omega.auth_seq_id_1 177 _pdbx_validate_peptide_omega.PDB_ins_code_1 ? _pdbx_validate_peptide_omega.label_alt_id_1 ? _pdbx_validate_peptide_omega.auth_comp_id_2 PRO _pdbx_validate_peptide_omega.auth_asym_id_2 M _pdbx_validate_peptide_omega.auth_seq_id_2 178 _pdbx_validate_peptide_omega.PDB_ins_code_2 ? _pdbx_validate_peptide_omega.label_alt_id_2 ? _pdbx_validate_peptide_omega.omega -34.50 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A LYS 28 ? CG ? A LYS 7 CG 2 1 Y 1 A LYS 28 ? CD ? A LYS 7 CD 3 1 Y 1 A LYS 28 ? CE ? A LYS 7 CE 4 1 Y 1 A LYS 28 ? NZ ? A LYS 7 NZ 5 1 Y 1 A LYS 64 ? CG ? A LYS 43 CG 6 1 Y 1 A LYS 64 ? CD ? A LYS 43 CD 7 1 Y 1 A LYS 64 ? CE ? A LYS 43 CE 8 1 Y 1 A LYS 64 ? NZ ? A LYS 43 NZ 9 1 Y 1 A LYS 95 ? CG ? A LYS 74 CG 10 1 Y 1 A LYS 95 ? CD ? A LYS 74 CD 11 1 Y 1 A LYS 95 ? CE ? A LYS 74 CE 12 1 Y 1 A LYS 95 ? NZ ? A LYS 74 NZ 13 1 Y 1 A GLN 165 ? CG ? A GLN 144 CG 14 1 Y 1 A GLN 165 ? CD ? A GLN 144 CD 15 1 Y 1 A GLN 165 ? OE1 ? A GLN 144 OE1 16 1 Y 1 A GLN 165 ? NE2 ? A GLN 144 NE2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 22 ? A GLY 1 2 1 Y 1 A SER 23 ? A SER 2 3 1 Y 1 A GLY 24 ? A GLY 3 4 1 Y 1 A GLY 25 ? A GLY 4 5 1 Y 1 A SER 26 ? A SER 5 6 1 Y 1 A GLY 27 ? A GLY 6 7 1 Y 1 A SER 96 ? A SER 75 8 1 Y 1 A ASP 166 ? A ASP 145 9 1 Y 1 M LYS 166 ? B LYS 1 10 1 Y 1 M ALA 167 ? B ALA 2 11 1 Y 1 M ALA 179 ? B ALA 14 12 1 Y 1 M ASP 180 ? B ASP 15 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 'ZINC ION' ZN 4 'CHLORIDE ION' CL 5 water HOH # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 ZN 1 1 1 ZN ZN A . D 3 ZN 1 2 2 ZN ZN A . E 3 ZN 1 3 3 ZN ZN A . F 3 ZN 1 4 4 ZN ZN A . G 3 ZN 1 5 5 ZN ZN A . H 4 CL 1 167 1 CL CL A . I 5 HOH 1 6 6 HOH HOH A . I 5 HOH 2 7 7 HOH HOH A . I 5 HOH 3 8 8 HOH HOH A . I 5 HOH 4 9 9 HOH HOH A . I 5 HOH 5 11 11 HOH HOH A . I 5 HOH 6 12 12 HOH HOH A . I 5 HOH 7 14 14 HOH HOH A . I 5 HOH 8 15 15 HOH HOH A . I 5 HOH 9 16 16 HOH HOH A . I 5 HOH 10 17 17 HOH HOH A . I 5 HOH 11 18 18 HOH HOH A . I 5 HOH 12 19 19 HOH HOH A . I 5 HOH 13 20 20 HOH HOH A . I 5 HOH 14 21 21 HOH HOH A . I 5 HOH 15 168 1 HOH HOH A . I 5 HOH 16 169 2 HOH HOH A . I 5 HOH 17 170 3 HOH HOH A . I 5 HOH 18 171 4 HOH HOH A . I 5 HOH 19 172 5 HOH HOH A . I 5 HOH 20 173 22 HOH HOH A . I 5 HOH 21 174 23 HOH HOH A . I 5 HOH 22 175 24 HOH HOH A . I 5 HOH 23 176 25 HOH HOH A . I 5 HOH 24 177 26 HOH HOH A . I 5 HOH 25 178 27 HOH HOH A . I 5 HOH 26 179 28 HOH HOH A . I 5 HOH 27 180 29 HOH HOH A . I 5 HOH 28 181 30 HOH HOH A . I 5 HOH 29 182 31 HOH HOH A . I 5 HOH 30 183 32 HOH HOH A . I 5 HOH 31 184 33 HOH HOH A . I 5 HOH 32 185 34 HOH HOH A . I 5 HOH 33 186 36 HOH HOH A . I 5 HOH 34 187 37 HOH HOH A . I 5 HOH 35 188 38 HOH HOH A . I 5 HOH 36 189 39 HOH HOH A . I 5 HOH 37 190 40 HOH HOH A . I 5 HOH 38 191 41 HOH HOH A . I 5 HOH 39 192 42 HOH HOH A . I 5 HOH 40 193 43 HOH HOH A . I 5 HOH 41 194 44 HOH HOH A . I 5 HOH 42 195 45 HOH HOH A . I 5 HOH 43 196 47 HOH HOH A . I 5 HOH 44 197 48 HOH HOH A . I 5 HOH 45 198 49 HOH HOH A . I 5 HOH 46 199 50 HOH HOH A . I 5 HOH 47 200 51 HOH HOH A . I 5 HOH 48 201 52 HOH HOH A . I 5 HOH 49 202 53 HOH HOH A . I 5 HOH 50 203 54 HOH HOH A . I 5 HOH 51 204 55 HOH HOH A . I 5 HOH 52 205 57 HOH HOH A . I 5 HOH 53 206 58 HOH HOH A . I 5 HOH 54 207 59 HOH HOH A . I 5 HOH 55 208 60 HOH HOH A . I 5 HOH 56 209 61 HOH HOH A . I 5 HOH 57 210 62 HOH HOH A . I 5 HOH 58 211 63 HOH HOH A . I 5 HOH 59 212 65 HOH HOH A . I 5 HOH 60 213 66 HOH HOH A . I 5 HOH 61 214 67 HOH HOH A . I 5 HOH 62 215 68 HOH HOH A . I 5 HOH 63 216 69 HOH HOH A . I 5 HOH 64 217 70 HOH HOH A . I 5 HOH 65 218 71 HOH HOH A . I 5 HOH 66 219 72 HOH HOH A . I 5 HOH 67 220 73 HOH HOH A . I 5 HOH 68 221 74 HOH HOH A . I 5 HOH 69 222 75 HOH HOH A . I 5 HOH 70 223 76 HOH HOH A . I 5 HOH 71 224 77 HOH HOH A . I 5 HOH 72 225 78 HOH HOH A . I 5 HOH 73 226 79 HOH HOH A . I 5 HOH 74 227 81 HOH HOH A . I 5 HOH 75 228 82 HOH HOH A . I 5 HOH 76 229 83 HOH HOH A . I 5 HOH 77 230 84 HOH HOH A . I 5 HOH 78 231 86 HOH HOH A . I 5 HOH 79 232 87 HOH HOH A . I 5 HOH 80 233 88 HOH HOH A . I 5 HOH 81 234 89 HOH HOH A . I 5 HOH 82 235 90 HOH HOH A . I 5 HOH 83 236 91 HOH HOH A . I 5 HOH 84 237 92 HOH HOH A . I 5 HOH 85 238 93 HOH HOH A . I 5 HOH 86 239 94 HOH HOH A . I 5 HOH 87 240 95 HOH HOH A . I 5 HOH 88 241 96 HOH HOH A . J 5 HOH 1 10 10 HOH HOH M . J 5 HOH 2 13 13 HOH HOH M . J 5 HOH 3 35 35 HOH HOH M . J 5 HOH 4 46 46 HOH HOH M . J 5 HOH 5 56 56 HOH HOH M . J 5 HOH 6 64 64 HOH HOH M . J 5 HOH 7 80 80 HOH HOH M . J 5 HOH 8 85 85 HOH HOH M . #