HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 03-SEP-09 3IWT TITLE STRUCTURE OF HYPOTHETICAL MOLYBDENUM COFACTOR BIOSYNTHESIS PROTEIN B TITLE 2 FROM SULFOLOBUS TOKODAII COMPND MOL_ID: 1; COMPND 2 MOLECULE: 178AA LONG HYPOTHETICAL MOLYBDENUM COFACTOR BIOSYNTHESIS COMPND 3 PROTEIN B; COMPND 4 CHAIN: A, B, C; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SULFOLOBUS TOKODAII; SOURCE 3 ORGANISM_TAXID: 111955; SOURCE 4 STRAIN: 7, DSM 16993, JCM 10545, NBRC 100140; SOURCE 5 GENE: ST2315; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ROSETTA(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET-21A KEYWDS MOLYBDENUM COFACTOR, BIOSYNTHESIS, STRUCTURAL GENOMICS, UNKNOWN KEYWDS 2 FUNCTION, NPPSFA, NATIONAL PROJECT ON PROTEIN STRUCTURAL AND KEYWDS 3 FUNCTIONAL ANALYSES, RIKEN STRUCTURAL GENOMICS/PROTEOMICS KEYWDS 4 INITIATIVE, RSGI EXPDTA X-RAY DIFFRACTION AUTHOR S.V.ANTONYUK,M.J.ELLIS,R.W.STRANGE,S.S.HASNAIN,Y.BESSHO,S.KURAMITSU, AUTHOR 2 S.YOKOYAMA,RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 5 01-NOV-23 3IWT 1 REMARK LINK REVDAT 4 01-NOV-17 3IWT 1 REMARK REVDAT 3 13-JUL-11 3IWT 1 VERSN REVDAT 2 19-JAN-10 3IWT 1 JRNL REVDAT 1 29-SEP-09 3IWT 0 SPRSDE 29-SEP-09 3IWT 2PJK JRNL AUTH S.V.ANTONYUK,R.W.STRANGE,M.J.ELLIS,Y.BESSHO,S.KURAMITSU, JRNL AUTH 2 A.SHINKAI,S.YOKOYAMA,S.S.HASNAIN JRNL TITL STRUCTURE OF HYPOTHETICAL MO-COFACTOR BIOSYNTHESIS PROTEIN B JRNL TITL 2 (ST2315) FROM SULFOLOBUS TOKODAII JRNL REF ACTA CRYSTALLOGR.,SECT.F V. 65 1200 2009 JRNL REFN ESSN 1744-3091 JRNL PMID 20054111 JRNL DOI 10.1107/S1744309109043772 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.3.0037 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.74 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 3 NUMBER OF REFLECTIONS : 89742 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.169 REMARK 3 R VALUE (WORKING SET) : 0.168 REMARK 3 FREE R VALUE : 0.187 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4506 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 6118 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.04 REMARK 3 BIN R VALUE (WORKING SET) : 0.2880 REMARK 3 BIN FREE R VALUE SET COUNT : 315 REMARK 3 BIN FREE R VALUE : 0.3110 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3882 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 70 REMARK 3 SOLVENT ATOMS : 581 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 31.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 47.86 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.06000 REMARK 3 B22 (A**2) : 0.06000 REMARK 3 B33 (A**2) : -0.09000 REMARK 3 B12 (A**2) : 0.03000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.087 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.085 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.065 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.201 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.971 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.965 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4198 ; 0.015 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2946 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5699 ; 1.477 ; 2.018 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7310 ; 0.997 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 550 ; 5.622 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 157 ;33.480 ;24.968 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 794 ;12.912 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 17 ;11.021 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 688 ; 0.093 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4497 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 756 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 831 ; 0.211 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 3005 ; 0.191 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2016 ; 0.172 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 2071 ; 0.087 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 437 ; 0.187 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 3 ; 0.125 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 24 ; 0.249 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 75 ; 0.225 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 33 ; 0.197 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3474 ; 1.087 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1040 ; 0.205 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4240 ; 1.234 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1982 ; 2.195 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1432 ; 2.865 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 13 A 178 REMARK 3 ORIGIN FOR THE GROUP (A): 15.9950 69.2690 -15.6420 REMARK 3 T TENSOR REMARK 3 T11: -0.3323 T22: 0.0886 REMARK 3 T33: -0.2791 T12: -0.1050 REMARK 3 T13: 0.0119 T23: 0.0224 REMARK 3 L TENSOR REMARK 3 L11: 1.7464 L22: 0.7428 REMARK 3 L33: 1.2543 L12: -0.2430 REMARK 3 L13: 0.7630 L23: 0.0051 REMARK 3 S TENSOR REMARK 3 S11: -0.1590 S12: 0.4158 S13: 0.0911 REMARK 3 S21: -0.0959 S22: 0.1028 S23: -0.0757 REMARK 3 S31: -0.0842 S32: 0.2572 S33: 0.0562 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 13 B 178 REMARK 3 ORIGIN FOR THE GROUP (A): 15.7040 67.1690 16.9990 REMARK 3 T TENSOR REMARK 3 T11: -0.3110 T22: -0.0376 REMARK 3 T33: -0.2529 T12: 0.0668 REMARK 3 T13: -0.0301 T23: -0.0321 REMARK 3 L TENSOR REMARK 3 L11: 0.6544 L22: 0.7425 REMARK 3 L33: 1.0692 L12: 0.0314 REMARK 3 L13: 0.0298 L23: 0.2216 REMARK 3 S TENSOR REMARK 3 S11: -0.0911 S12: 0.0114 S13: 0.0301 REMARK 3 S21: 0.0775 S22: 0.0409 S23: -0.0393 REMARK 3 S31: -0.0765 S32: -0.0256 S33: 0.0502 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 13 C 178 REMARK 3 ORIGIN FOR THE GROUP (A): 15.8190 39.8300 -1.1980 REMARK 3 T TENSOR REMARK 3 T11: -0.3606 T22: -0.1085 REMARK 3 T33: -0.1078 T12: 0.0505 REMARK 3 T13: 0.0564 T23: -0.0791 REMARK 3 L TENSOR REMARK 3 L11: 2.1252 L22: 1.4987 REMARK 3 L33: 0.9906 L12: 0.5454 REMARK 3 L13: 0.3031 L23: -0.4676 REMARK 3 S TENSOR REMARK 3 S11: -0.0432 S12: 0.1299 S13: -0.5129 REMARK 3 S21: -0.0472 S22: 0.1106 S23: -0.1325 REMARK 3 S31: 0.1187 S32: 0.1259 S33: -0.0674 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3IWT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 07-SEP-09. REMARK 100 THE DEPOSITION ID IS D_1000054963. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-MAR-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SRS REMARK 200 BEAMLINE : PX10.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.074 REMARK 200 MONOCHROMATOR : SAGITALLY FOCUSED SI(111) REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 91510 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 200 DATA REDUNDANCY : 9.000 REMARK 200 R MERGE (I) : 0.06500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.97 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.7 REMARK 200 DATA REDUNDANCY IN SHELL : 4.00 REMARK 200 R MERGE FOR SHELL (I) : 0.61000 REMARK 200 R SYM FOR SHELL (I) : 0.50000 REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1Y5E REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 74.34 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.79 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10% W/V PEG 8000, 0.1M TRIS-HCL, 0.2M REMARK 280 MGCL2, PH 7.0, MICROBATCH UNDER OIL, TEMPERATURE 298.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 64 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+1/3 REMARK 290 6555 X-Y,X,Z+2/3 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+1/3 REMARK 290 11555 -X+Y,Y,-Z REMARK 290 12555 X,X-Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 70.17500 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 140.35000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 70.17500 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 140.35000 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 70.17500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 140.35000 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 70.17500 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 140.35000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 18090 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 38770 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -42.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6830 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21590 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -14.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH C 818 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 HIS A 3 REMARK 465 ALA A 4 REMARK 465 HIS A 5 REMARK 465 LYS A 6 REMARK 465 LYS A 7 REMARK 465 HIS A 8 REMARK 465 LYS A 9 REMARK 465 GLU A 10 REMARK 465 ASN A 11 REMARK 465 ALA A 12 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 HIS B 3 REMARK 465 ALA B 4 REMARK 465 HIS B 5 REMARK 465 LYS B 6 REMARK 465 LYS B 7 REMARK 465 HIS B 8 REMARK 465 LYS B 9 REMARK 465 GLU B 10 REMARK 465 ASN B 11 REMARK 465 ALA B 12 REMARK 465 MET C 1 REMARK 465 SER C 2 REMARK 465 HIS C 3 REMARK 465 ALA C 4 REMARK 465 HIS C 5 REMARK 465 LYS C 6 REMARK 465 LYS C 7 REMARK 465 HIS C 8 REMARK 465 LYS C 9 REMARK 465 GLU C 10 REMARK 465 ASN C 11 REMARK 465 ALA C 12 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 51 CD GLU A 51 OE1 0.100 REMARK 500 GLU A 51 CD GLU A 51 OE2 0.129 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 129 -125.97 51.32 REMARK 500 LYS B 129 -124.70 51.10 REMARK 500 VAL C 38 105.27 50.64 REMARK 500 VAL C 38 105.27 56.99 REMARK 500 LYS C 129 -125.86 50.79 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 668 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 912 O REMARK 620 2 HOH A 913 O 170.7 REMARK 620 3 HOH A 914 O 88.8 88.1 REMARK 620 4 HOH A 915 O 100.4 88.0 84.3 REMARK 620 5 HOH A 916 O 86.0 85.4 93.6 173.2 REMARK 620 6 HOH A 917 O 75.2 108.7 162.8 92.4 91.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 675 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B 854 O REMARK 620 2 HOH B 856 O 94.8 REMARK 620 3 HOH B 857 O 82.4 99.7 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG A 180 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 668 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 179 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 675 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG B 208 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG B 209 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 180 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG B 181 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG B 182 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG B 183 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG B 179 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG C 180 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: STO001002315.1 RELATED DB: TARGETDB DBREF 3IWT A 1 178 UNP Q96Y52 Q96Y52_SULTO 1 178 DBREF 3IWT B 1 178 UNP Q96Y52 Q96Y52_SULTO 1 178 DBREF 3IWT C 1 178 UNP Q96Y52 Q96Y52_SULTO 1 178 SEQRES 1 A 178 MET SER HIS ALA HIS LYS LYS HIS LYS GLU ASN ALA PRO SEQRES 2 A 178 LYS SER LEU ASN PHE TYR VAL ILE THR ILE SER THR SER SEQRES 3 A 178 ARG TYR GLU LYS LEU LEU LYS LYS GLU PRO ILE VAL ASP SEQRES 4 A 178 GLU SER GLY ASP ILE ILE LYS GLN LEU LEU ILE GLU ASN SEQRES 5 A 178 GLY HIS LYS ILE ILE GLY TYR SER LEU VAL PRO ASP ASP SEQRES 6 A 178 LYS ILE LYS ILE LEU LYS ALA PHE THR ASP ALA LEU SER SEQRES 7 A 178 ILE ASP GLU VAL ASP VAL ILE ILE SER THR GLY GLY THR SEQRES 8 A 178 GLY TYR SER PRO THR ASP ILE THR VAL GLU THR ILE ARG SEQRES 9 A 178 LYS LEU PHE ASP ARG GLU ILE GLU GLY PHE SER ASP VAL SEQRES 10 A 178 PHE ARG LEU VAL SER PHE ASN ASP PRO GLU VAL LYS ALA SEQRES 11 A 178 ALA ALA TYR LEU THR LYS ALA SER ALA GLY ILE ILE GLY SEQRES 12 A 178 LYS LYS ILE VAL TYR LEU LEU PRO GLY SER PRO ASP ALA SEQRES 13 A 178 VAL LYS LEU ALA LEU LYS GLU LEU ILE LEU PRO GLU VAL SEQRES 14 A 178 GLY HIS LEU VAL TYR LEU VAL ARG SER SEQRES 1 B 178 MET SER HIS ALA HIS LYS LYS HIS LYS GLU ASN ALA PRO SEQRES 2 B 178 LYS SER LEU ASN PHE TYR VAL ILE THR ILE SER THR SER SEQRES 3 B 178 ARG TYR GLU LYS LEU LEU LYS LYS GLU PRO ILE VAL ASP SEQRES 4 B 178 GLU SER GLY ASP ILE ILE LYS GLN LEU LEU ILE GLU ASN SEQRES 5 B 178 GLY HIS LYS ILE ILE GLY TYR SER LEU VAL PRO ASP ASP SEQRES 6 B 178 LYS ILE LYS ILE LEU LYS ALA PHE THR ASP ALA LEU SER SEQRES 7 B 178 ILE ASP GLU VAL ASP VAL ILE ILE SER THR GLY GLY THR SEQRES 8 B 178 GLY TYR SER PRO THR ASP ILE THR VAL GLU THR ILE ARG SEQRES 9 B 178 LYS LEU PHE ASP ARG GLU ILE GLU GLY PHE SER ASP VAL SEQRES 10 B 178 PHE ARG LEU VAL SER PHE ASN ASP PRO GLU VAL LYS ALA SEQRES 11 B 178 ALA ALA TYR LEU THR LYS ALA SER ALA GLY ILE ILE GLY SEQRES 12 B 178 LYS LYS ILE VAL TYR LEU LEU PRO GLY SER PRO ASP ALA SEQRES 13 B 178 VAL LYS LEU ALA LEU LYS GLU LEU ILE LEU PRO GLU VAL SEQRES 14 B 178 GLY HIS LEU VAL TYR LEU VAL ARG SER SEQRES 1 C 178 MET SER HIS ALA HIS LYS LYS HIS LYS GLU ASN ALA PRO SEQRES 2 C 178 LYS SER LEU ASN PHE TYR VAL ILE THR ILE SER THR SER SEQRES 3 C 178 ARG TYR GLU LYS LEU LEU LYS LYS GLU PRO ILE VAL ASP SEQRES 4 C 178 GLU SER GLY ASP ILE ILE LYS GLN LEU LEU ILE GLU ASN SEQRES 5 C 178 GLY HIS LYS ILE ILE GLY TYR SER LEU VAL PRO ASP ASP SEQRES 6 C 178 LYS ILE LYS ILE LEU LYS ALA PHE THR ASP ALA LEU SER SEQRES 7 C 178 ILE ASP GLU VAL ASP VAL ILE ILE SER THR GLY GLY THR SEQRES 8 C 178 GLY TYR SER PRO THR ASP ILE THR VAL GLU THR ILE ARG SEQRES 9 C 178 LYS LEU PHE ASP ARG GLU ILE GLU GLY PHE SER ASP VAL SEQRES 10 C 178 PHE ARG LEU VAL SER PHE ASN ASP PRO GLU VAL LYS ALA SEQRES 11 C 178 ALA ALA TYR LEU THR LYS ALA SER ALA GLY ILE ILE GLY SEQRES 12 C 178 LYS LYS ILE VAL TYR LEU LEU PRO GLY SER PRO ASP ALA SEQRES 13 C 178 VAL LYS LEU ALA LEU LYS GLU LEU ILE LEU PRO GLU VAL SEQRES 14 C 178 GLY HIS LEU VAL TYR LEU VAL ARG SER HET PEG A 180 7 HET MG A 668 1 HET GOL A 179 6 HET MG B 675 1 HET PEG B 208 7 HET PEG B 209 7 HET GOL B 180 6 HET PEG B 181 14 HET PEG B 182 7 HET PEG B 183 7 HET PEG B 179 7 HET PEG C 180 7 HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM MG MAGNESIUM ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 4 PEG 8(C4 H10 O3) FORMUL 5 MG 2(MG 2+) FORMUL 6 GOL 2(C3 H8 O3) FORMUL 16 HOH *581(H2 O) HELIX 1 1 SER A 24 LYS A 33 1 10 HELIX 2 2 ASP A 39 ASN A 52 1 14 HELIX 3 3 ASP A 65 SER A 78 1 14 HELIX 4 4 ILE A 98 ARG A 104 1 7 HELIX 5 5 LYS A 105 PHE A 107 5 3 HELIX 6 6 GLU A 112 ASN A 124 1 13 HELIX 7 7 VAL A 128 THR A 135 5 8 HELIX 8 8 SER A 153 LEU A 164 1 12 HELIX 9 9 LEU A 164 ARG A 177 1 14 HELIX 10 10 SER B 24 LYS B 33 1 10 HELIX 11 11 ASP B 39 ASN B 52 1 14 HELIX 12 12 ASP B 65 SER B 78 1 14 HELIX 13 13 ILE B 98 ARG B 104 1 7 HELIX 14 14 LYS B 105 PHE B 107 5 3 HELIX 15 15 GLY B 113 ASP B 125 1 13 HELIX 16 16 VAL B 128 THR B 135 5 8 HELIX 17 17 SER B 153 LEU B 164 1 12 HELIX 18 18 GLU B 168 ARG B 177 1 10 HELIX 19 19 SER C 24 LYS C 33 1 10 HELIX 20 20 ASP C 39 ASN C 52 1 14 HELIX 21 21 ASP C 65 SER C 78 1 14 HELIX 22 22 ILE C 98 ARG C 104 1 7 HELIX 23 23 LYS C 105 PHE C 107 5 3 HELIX 24 24 GLY C 113 ASN C 124 1 12 HELIX 25 25 VAL C 128 THR C 135 5 8 HELIX 26 26 SER C 153 LEU C 164 1 12 HELIX 27 27 LEU C 164 ARG C 177 1 14 SHEET 1 A 6 LYS A 55 VAL A 62 0 SHEET 2 A 6 ASN A 17 ILE A 23 1 N PHE A 18 O LYS A 55 SHEET 3 A 6 VAL A 84 THR A 88 1 O THR A 88 N ILE A 23 SHEET 4 A 6 LYS A 145 LEU A 150 1 O LEU A 150 N SER A 87 SHEET 5 A 6 SER A 138 ILE A 142 -1 N SER A 138 O LEU A 149 SHEET 6 A 6 ARG A 109 GLU A 110 -1 N ARG A 109 O ILE A 141 SHEET 1 B 6 LYS B 55 VAL B 62 0 SHEET 2 B 6 ASN B 17 ILE B 23 1 N PHE B 18 O LYS B 55 SHEET 3 B 6 VAL B 84 THR B 88 1 O THR B 88 N ILE B 23 SHEET 4 B 6 LYS B 145 LEU B 150 1 O TYR B 148 N ILE B 85 SHEET 5 B 6 SER B 138 ILE B 142 -1 N SER B 138 O LEU B 149 SHEET 6 B 6 ARG B 109 GLU B 110 -1 N ARG B 109 O ILE B 141 SHEET 1 C 6 LYS C 55 VAL C 62 0 SHEET 2 C 6 ASN C 17 ILE C 23 1 N PHE C 18 O LYS C 55 SHEET 3 C 6 VAL C 84 THR C 88 1 O THR C 88 N ILE C 23 SHEET 4 C 6 LYS C 145 LEU C 150 1 O ILE C 146 N ILE C 85 SHEET 5 C 6 SER C 138 ILE C 142 -1 N SER C 138 O LEU C 149 SHEET 6 C 6 ARG C 109 GLU C 110 -1 N ARG C 109 O ILE C 141 LINK MG MG A 668 O HOH A 912 1555 1555 2.05 LINK MG MG A 668 O HOH A 913 1555 1555 1.96 LINK MG MG A 668 O HOH A 914 1555 1555 1.99 LINK MG MG A 668 O HOH A 915 1555 1555 1.84 LINK MG MG A 668 O HOH A 916 1555 1555 1.84 LINK MG MG A 668 O HOH A 917 1555 1555 2.10 LINK MG A MG B 675 O HOH B 854 1555 1555 2.19 LINK MG A MG B 675 O AHOH B 856 1555 1555 2.15 LINK MG A MG B 675 O BHOH B 857 1555 1555 2.31 SITE 1 AC1 7 ASP A 65 LYS A 66 ILE A 67 HOH A 821 SITE 2 AC1 7 ASP B 108 GLY B 143 HOH B 819 SITE 1 AC2 6 HOH A 912 HOH A 913 HOH A 914 HOH A 915 SITE 2 AC2 6 HOH A 916 HOH A 917 SITE 1 AC3 5 PHE A 118 SER A 122 ALA A 131 ALA A 156 SITE 2 AC3 5 HOH A 769 SITE 1 AC4 5 ASP B 125 HOH B 854 HOH B 856 HOH B 857 SITE 2 AC4 5 HOH B 858 SITE 1 AC5 6 HOH A 219 LYS B 66 THR B 102 PEG B 179 SITE 2 AC5 6 HOH B 757 HOH B 772 SITE 1 AC6 11 PRO B 126 GLU B 127 ASP B 155 LYS B 158 SITE 2 AC6 11 LEU B 159 LYS B 162 GLU B 163 PEG B 182 SITE 3 AC6 11 HOH B 786 HOH B 856 HOH B 862 SITE 1 AC7 5 ARG B 27 GLU B 40 SER B 41 GLY B 152 SITE 2 AC7 5 HOH B 709 SITE 1 AC8 7 ILE B 37 VAL B 38 ASP B 39 ASP B 43 SITE 2 AC8 7 TYR B 59 LEU B 61 HOH B 855 SITE 1 AC9 9 PRO B 126 LYS B 129 LYS B 162 GLU B 163 SITE 2 AC9 9 PEG B 209 HOH B 720 HOH B 804 HOH B 827 SITE 3 AC9 9 HOH B 834 SITE 1 BC1 5 LYS B 14 GLY B 170 HIS B 171 HOH B 722 SITE 2 BC1 5 HOH B 726 SITE 1 BC2 9 ASP A 108 GLY A 143 HOH A 212 ASP B 65 SITE 2 BC2 9 LYS B 66 ILE B 67 PEG B 208 HOH B 682 SITE 3 BC2 9 HOH B 772 SITE 1 BC3 7 LYS A 129 HOH B 827 LYS C 162 GLU C 163 SITE 2 BC3 7 PRO C 167 HOH C 531 HOH C 559 CRYST1 136.675 136.675 210.525 90.00 90.00 120.00 P 64 2 2 36 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007317 0.004224 0.000000 0.00000 SCALE2 0.000000 0.008449 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004750 0.00000