data_3IXM # _entry.id 3IXM # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.281 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 3IXM RCSB RCSB054992 WWPDB D_1000054992 # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 3IXL 'Gly74Cys/Cys188Ser mutant in the liganded form' unspecified PDB 3DTV 'wild form protein without ligand' unspecified PDB 3DG9 'unligand form protein from Bordatella bronchiseptica' unspecified PDB 1ZUW 'B.subtilis glutamate racemase (RacE) with D-Glu' unspecified PDB 2DX7 'Pyrococcus horikoshii OT3 aspartate racemase complex with citric acid' unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3IXM _pdbx_database_status.recvd_initial_deposition_date 2009-09-04 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Nakasako, M.' 1 'Obata, R.' 2 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary ;Structural Basis for Inverting the Enantioselectivity of Arylmalonate Decarboxylase Revealed by the Structural Analysis of the Gly74Cys/Cys188Ser Mutant in the Liganded Form ; Biochemistry 49 1963 1969 2010 BICHAW US 0006-2960 0033 ? 20136121 10.1021/bi9015605 1 'Crystallization and preliminary X-ray diffraction experiments of arylmalonate decarboxylase from Alcaligenes bronchisepticus' 'Acta Crystallogr.,Sect.F' 64 610 613 2008 ? DK 1744-3091 ? ? 18607088 10.1107/S1744309108014723 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Obata, R.' 1 primary 'Nakasako, M.' 2 1 'Nakasako, M.' 3 1 'Obata, R.' 4 1 'Okubo, R.' 5 1 'Nakayama, S.' 6 1 'Miyamoto, K.' 7 1 'Ohta, H.' 8 # _cell.entry_id 3IXM _cell.length_a 100.730 _cell.length_b 100.730 _cell.length_c 54.165 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 9 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3IXM _symmetry.space_group_name_H-M 'H 3' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Arylmalonate decarboxylase' 24801.449 1 4.1.1.76 G74C ? ? 2 non-polymer syn 'SULFATE ION' 96.063 2 ? ? ? ? 3 water nat water 18.015 161 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name AMDase # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MQQASTPTIGMIVPPAAGLVPADGARLYPDLPFIASGLGLGSVTPEGYDAVIESVVDHARRLQKQGAAVVSLMCTSLSFY RGAAFNAALTVAMREATGLPCTTMSTAVLNGLRALGVRRVALATAYIDDVNERLAAFLAEESLVPTGCRSLGITGVEAMA RVDTATLVDLCVRAFEAAPDSDGILLSCGGLLTLDAIPEVERRLGVPVVSSSPAGFWDAVRLAGGGAKARPGYGRLFDES ; _entity_poly.pdbx_seq_one_letter_code_can ;MQQASTPTIGMIVPPAAGLVPADGARLYPDLPFIASGLGLGSVTPEGYDAVIESVVDHARRLQKQGAAVVSLMCTSLSFY RGAAFNAALTVAMREATGLPCTTMSTAVLNGLRALGVRRVALATAYIDDVNERLAAFLAEESLVPTGCRSLGITGVEAMA RVDTATLVDLCVRAFEAAPDSDGILLSCGGLLTLDAIPEVERRLGVPVVSSSPAGFWDAVRLAGGGAKARPGYGRLFDES ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 GLN n 1 3 GLN n 1 4 ALA n 1 5 SER n 1 6 THR n 1 7 PRO n 1 8 THR n 1 9 ILE n 1 10 GLY n 1 11 MET n 1 12 ILE n 1 13 VAL n 1 14 PRO n 1 15 PRO n 1 16 ALA n 1 17 ALA n 1 18 GLY n 1 19 LEU n 1 20 VAL n 1 21 PRO n 1 22 ALA n 1 23 ASP n 1 24 GLY n 1 25 ALA n 1 26 ARG n 1 27 LEU n 1 28 TYR n 1 29 PRO n 1 30 ASP n 1 31 LEU n 1 32 PRO n 1 33 PHE n 1 34 ILE n 1 35 ALA n 1 36 SER n 1 37 GLY n 1 38 LEU n 1 39 GLY n 1 40 LEU n 1 41 GLY n 1 42 SER n 1 43 VAL n 1 44 THR n 1 45 PRO n 1 46 GLU n 1 47 GLY n 1 48 TYR n 1 49 ASP n 1 50 ALA n 1 51 VAL n 1 52 ILE n 1 53 GLU n 1 54 SER n 1 55 VAL n 1 56 VAL n 1 57 ASP n 1 58 HIS n 1 59 ALA n 1 60 ARG n 1 61 ARG n 1 62 LEU n 1 63 GLN n 1 64 LYS n 1 65 GLN n 1 66 GLY n 1 67 ALA n 1 68 ALA n 1 69 VAL n 1 70 VAL n 1 71 SER n 1 72 LEU n 1 73 MET n 1 74 CYS n 1 75 THR n 1 76 SER n 1 77 LEU n 1 78 SER n 1 79 PHE n 1 80 TYR n 1 81 ARG n 1 82 GLY n 1 83 ALA n 1 84 ALA n 1 85 PHE n 1 86 ASN n 1 87 ALA n 1 88 ALA n 1 89 LEU n 1 90 THR n 1 91 VAL n 1 92 ALA n 1 93 MET n 1 94 ARG n 1 95 GLU n 1 96 ALA n 1 97 THR n 1 98 GLY n 1 99 LEU n 1 100 PRO n 1 101 CYS n 1 102 THR n 1 103 THR n 1 104 MET n 1 105 SER n 1 106 THR n 1 107 ALA n 1 108 VAL n 1 109 LEU n 1 110 ASN n 1 111 GLY n 1 112 LEU n 1 113 ARG n 1 114 ALA n 1 115 LEU n 1 116 GLY n 1 117 VAL n 1 118 ARG n 1 119 ARG n 1 120 VAL n 1 121 ALA n 1 122 LEU n 1 123 ALA n 1 124 THR n 1 125 ALA n 1 126 TYR n 1 127 ILE n 1 128 ASP n 1 129 ASP n 1 130 VAL n 1 131 ASN n 1 132 GLU n 1 133 ARG n 1 134 LEU n 1 135 ALA n 1 136 ALA n 1 137 PHE n 1 138 LEU n 1 139 ALA n 1 140 GLU n 1 141 GLU n 1 142 SER n 1 143 LEU n 1 144 VAL n 1 145 PRO n 1 146 THR n 1 147 GLY n 1 148 CYS n 1 149 ARG n 1 150 SER n 1 151 LEU n 1 152 GLY n 1 153 ILE n 1 154 THR n 1 155 GLY n 1 156 VAL n 1 157 GLU n 1 158 ALA n 1 159 MET n 1 160 ALA n 1 161 ARG n 1 162 VAL n 1 163 ASP n 1 164 THR n 1 165 ALA n 1 166 THR n 1 167 LEU n 1 168 VAL n 1 169 ASP n 1 170 LEU n 1 171 CYS n 1 172 VAL n 1 173 ARG n 1 174 ALA n 1 175 PHE n 1 176 GLU n 1 177 ALA n 1 178 ALA n 1 179 PRO n 1 180 ASP n 1 181 SER n 1 182 ASP n 1 183 GLY n 1 184 ILE n 1 185 LEU n 1 186 LEU n 1 187 SER n 1 188 CYS n 1 189 GLY n 1 190 GLY n 1 191 LEU n 1 192 LEU n 1 193 THR n 1 194 LEU n 1 195 ASP n 1 196 ALA n 1 197 ILE n 1 198 PRO n 1 199 GLU n 1 200 VAL n 1 201 GLU n 1 202 ARG n 1 203 ARG n 1 204 LEU n 1 205 GLY n 1 206 VAL n 1 207 PRO n 1 208 VAL n 1 209 VAL n 1 210 SER n 1 211 SER n 1 212 SER n 1 213 PRO n 1 214 ALA n 1 215 GLY n 1 216 PHE n 1 217 TRP n 1 218 ASP n 1 219 ALA n 1 220 VAL n 1 221 ARG n 1 222 LEU n 1 223 ALA n 1 224 GLY n 1 225 GLY n 1 226 GLY n 1 227 ALA n 1 228 LYS n 1 229 ALA n 1 230 ARG n 1 231 PRO n 1 232 GLY n 1 233 TYR n 1 234 GLY n 1 235 ARG n 1 236 LEU n 1 237 PHE n 1 238 ASP n 1 239 GLU n 1 240 SER n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name 'Alcaligenes bronchisepticus' _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain KU1201 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Bordetella bronchiseptica' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 518 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain DH5alpha-MCR _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pAMD101 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code AMDA_BORBR _struct_ref.pdbx_db_accession Q05115 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MQQASTPTIGMIVPPAAGLVPADGARLYPDLPFIASGLGLGSVTPEGYDAVIESVVDHARRLQKQGAAVVSLMGTSLSFY RGAAFNAALTVAMREATGLPCTTMSTAVLNGLRALGVRRVALATAYIDDVNERLAAFLAEESLVPTGCRSLGITGVEAMA RVDTATLVDLCVRAFEAAPDSDGILLSCGGLLTLDAIPEVERRLGVPVVSSSPAGFWDAVRLAGGGAKARPGYGRLFDES ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3IXM _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 240 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q05115 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 240 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 240 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 3IXM _struct_ref_seq_dif.mon_id CYS _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 74 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code Q05115 _struct_ref_seq_dif.db_mon_id GLY _struct_ref_seq_dif.pdbx_seq_db_seq_num 74 _struct_ref_seq_dif.details ENGINEERED _struct_ref_seq_dif.pdbx_auth_seq_num 74 _struct_ref_seq_dif.pdbx_ordinal 1 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3IXM _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.13 _exptl_crystal.density_percent_sol 42.32 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.2 _exptl_crystal_grow.pdbx_details '1.2M ammonium sulfate, 15%(w/v) glycerol, 0.1M HEPES, pH 6.2, VAPOR DIFFUSION, HANGING DROP, temperature 293K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 225 mm CCD' _diffrn_detector.pdbx_collection_date 2008-04-22 _diffrn_detector.details mirror # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator Si _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.0000 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SPRING-8 BEAMLINE BL26B1' _diffrn_source.pdbx_synchrotron_site SPring-8 _diffrn_source.pdbx_synchrotron_beamline BL26B1 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.0000 # _reflns.entry_id 3IXM _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F 1 _reflns.d_resolution_low 100 _reflns.d_resolution_high 1.9 _reflns.number_obs 16054 _reflns.number_all ? _reflns.pdbx_number_measured_all 174138 _reflns.percent_possible_obs 94.2 _reflns.pdbx_Rmerge_I_obs 0.053 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 1.90 _reflns_shell.d_res_low 1.93 _reflns_shell.percent_possible_all 100 _reflns_shell.Rmerge_I_obs 0.129 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 3IXM _refine.ls_number_reflns_obs 15236 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 20.00 _refine.ls_d_res_high 1.90 _refine.ls_percent_reflns_obs 99.78 _refine.ls_R_factor_obs 0.18311 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.18002 _refine.ls_R_factor_R_free 0.24462 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.0 _refine.ls_number_reflns_R_free 804 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.952 _refine.correlation_coeff_Fo_to_Fc_free 0.916 _refine.B_iso_mean 23.296 _refine.aniso_B[1][1] -0.50 _refine.aniso_B[2][2] -0.50 _refine.aniso_B[3][3] 0.75 _refine.aniso_B[1][2] -0.25 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model 'PDB ENTRY 3DTV' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.170 _refine.pdbx_overall_ESU_R_Free 0.165 _refine.overall_SU_ML 0.106 _refine.overall_SU_B 3.484 _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_phase_error ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1673 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 10 _refine_hist.number_atoms_solvent 161 _refine_hist.number_atoms_total 1844 _refine_hist.d_res_high 1.90 _refine_hist.d_res_low 20.00 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.017 0.022 ? 1717 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.718 1.997 ? 2341 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 6.347 5.000 ? 232 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 29.095 21.864 ? 59 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 16.501 15.000 ? 256 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 20.903 15.000 ? 17 'X-RAY DIFFRACTION' ? r_chiral_restr 0.121 0.200 ? 281 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.006 0.020 ? 1282 'X-RAY DIFFRACTION' ? r_nbd_refined 0.224 0.200 ? 834 'X-RAY DIFFRACTION' ? r_nbtor_refined 0.308 0.200 ? 1199 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.200 0.200 ? 117 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.239 0.200 ? 63 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.289 0.200 ? 29 'X-RAY DIFFRACTION' ? r_mcbond_it 1.097 1.500 ? 1175 'X-RAY DIFFRACTION' ? r_mcangle_it 1.824 2.000 ? 1836 'X-RAY DIFFRACTION' ? r_scbond_it 2.958 3.000 ? 594 'X-RAY DIFFRACTION' ? r_scangle_it 4.739 4.500 ? 505 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.902 _refine_ls_shell.d_res_low 1.951 _refine_ls_shell.number_reflns_R_work 1109 _refine_ls_shell.R_factor_R_work 0.215 _refine_ls_shell.percent_reflns_obs 100.00 _refine_ls_shell.R_factor_R_free 0.314 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 65 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3IXM _struct.title 'Structure of the Gly74Cys mutant of arylmalonate decarboxylase in the sulfate ion associated form' _struct.pdbx_descriptor 'Arylmalonate decarboxylase (E.C.4.1.1.76)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag N _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3IXM _struct_keywords.pdbx_keywords LYASE _struct_keywords.text 'enantioselective racemase, Decarboxylase, Lyase' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 3 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLY A 24 ? TYR A 28 ? GLY A 24 TYR A 28 5 ? 5 HELX_P HELX_P2 2 GLY A 47 ? GLN A 65 ? GLY A 47 GLN A 65 1 ? 19 HELX_P HELX_P3 3 CYS A 74 ? TYR A 80 ? CYS A 74 TYR A 80 1 ? 7 HELX_P HELX_P4 4 GLY A 82 ? GLY A 98 ? GLY A 82 GLY A 98 1 ? 17 HELX_P HELX_P5 5 MET A 104 ? LEU A 115 ? MET A 104 LEU A 115 1 ? 12 HELX_P HELX_P6 6 ILE A 127 ? GLU A 141 ? ILE A 127 GLU A 141 1 ? 15 HELX_P HELX_P7 7 GLY A 155 ? ARG A 161 ? GLY A 155 ARG A 161 1 ? 7 HELX_P HELX_P8 8 ASP A 163 ? ALA A 178 ? ASP A 163 ALA A 178 1 ? 16 HELX_P HELX_P9 9 ASP A 195 ? GLY A 205 ? ASP A 195 GLY A 205 1 ? 11 HELX_P HELX_P10 10 SER A 211 ? ALA A 223 ? SER A 211 ALA A 223 1 ? 13 HELX_P HELX_P11 11 GLY A 234 ? GLU A 239 ? GLY A 234 GLU A 239 1 ? 6 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 4 ? B ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? parallel A 2 3 ? parallel A 3 4 ? parallel B 1 2 ? parallel B 2 3 ? parallel B 3 4 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 PHE A 33 ? GLY A 37 ? PHE A 33 GLY A 37 A 2 ILE A 9 ? VAL A 13 ? ILE A 9 VAL A 13 A 3 VAL A 69 ? LEU A 72 ? VAL A 69 LEU A 72 A 4 CYS A 101 ? THR A 103 ? CYS A 101 THR A 103 B 1 VAL A 144 ? SER A 150 ? VAL A 144 SER A 150 B 2 ARG A 119 ? THR A 124 ? ARG A 119 THR A 124 B 3 GLY A 183 ? SER A 187 ? GLY A 183 SER A 187 B 4 VAL A 208 ? SER A 210 ? VAL A 208 SER A 210 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O ILE A 34 ? O ILE A 34 N MET A 11 ? N MET A 11 A 2 3 N ILE A 12 ? N ILE A 12 O SER A 71 ? O SER A 71 A 3 4 N LEU A 72 ? N LEU A 72 O THR A 102 ? O THR A 102 B 1 2 O GLY A 147 ? O GLY A 147 N LEU A 122 ? N LEU A 122 B 2 3 N ALA A 121 ? N ALA A 121 O LEU A 185 ? O LEU A 185 B 3 4 N LEU A 186 ? N LEU A 186 O VAL A 209 ? O VAL A 209 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 5 'BINDING SITE FOR RESIDUE SO4 A 6001' AC2 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE SO4 A 6002' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 5 THR A 75 ? THR A 75 . ? 1_555 ? 2 AC1 5 SER A 76 ? SER A 76 . ? 1_555 ? 3 AC1 5 TYR A 126 ? TYR A 126 . ? 1_555 ? 4 AC1 5 GLY A 189 ? GLY A 189 . ? 1_555 ? 5 AC1 5 HOH D . ? HOH A 1115 . ? 1_555 ? 6 AC2 4 SER A 36 ? SER A 36 . ? 1_555 ? 7 AC2 4 ARG A 61 ? ARG A 61 . ? 1_555 ? 8 AC2 4 GLN A 65 ? GLN A 65 . ? 1_555 ? 9 AC2 4 HOH D . ? HOH A 1012 . ? 1_555 ? # _database_PDB_matrix.entry_id 3IXM _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3IXM _atom_sites.fract_transf_matrix[1][1] 0.009928 _atom_sites.fract_transf_matrix[1][2] 0.005732 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.011463 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.018462 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 ? ? ? A . n A 1 2 GLN 2 2 ? ? ? A . n A 1 3 GLN 3 3 ? ? ? A . n A 1 4 ALA 4 4 ? ? ? A . n A 1 5 SER 5 5 ? ? ? A . n A 1 6 THR 6 6 ? ? ? A . n A 1 7 PRO 7 7 7 PRO PRO A . n A 1 8 THR 8 8 8 THR THR A . n A 1 9 ILE 9 9 9 ILE ILE A . n A 1 10 GLY 10 10 10 GLY GLY A . n A 1 11 MET 11 11 11 MET MET A . n A 1 12 ILE 12 12 12 ILE ILE A . n A 1 13 VAL 13 13 13 VAL VAL A . n A 1 14 PRO 14 14 14 PRO PRO A . n A 1 15 PRO 15 15 15 PRO PRO A . n A 1 16 ALA 16 16 16 ALA ALA A . n A 1 17 ALA 17 17 17 ALA ALA A . n A 1 18 GLY 18 18 18 GLY GLY A . n A 1 19 LEU 19 19 19 LEU LEU A . n A 1 20 VAL 20 20 20 VAL VAL A . n A 1 21 PRO 21 21 21 PRO PRO A . n A 1 22 ALA 22 22 22 ALA ALA A . n A 1 23 ASP 23 23 23 ASP ASP A . n A 1 24 GLY 24 24 24 GLY GLY A . n A 1 25 ALA 25 25 25 ALA ALA A . n A 1 26 ARG 26 26 26 ARG ARG A . n A 1 27 LEU 27 27 27 LEU LEU A . n A 1 28 TYR 28 28 28 TYR TYR A . n A 1 29 PRO 29 29 29 PRO PRO A . n A 1 30 ASP 30 30 30 ASP ASP A . n A 1 31 LEU 31 31 31 LEU LEU A . n A 1 32 PRO 32 32 32 PRO PRO A . n A 1 33 PHE 33 33 33 PHE PHE A . n A 1 34 ILE 34 34 34 ILE ILE A . n A 1 35 ALA 35 35 35 ALA ALA A . n A 1 36 SER 36 36 36 SER SER A . n A 1 37 GLY 37 37 37 GLY GLY A . n A 1 38 LEU 38 38 38 LEU LEU A . n A 1 39 GLY 39 39 39 GLY GLY A . n A 1 40 LEU 40 40 40 LEU LEU A . n A 1 41 GLY 41 41 41 GLY GLY A . n A 1 42 SER 42 42 42 SER SER A . n A 1 43 VAL 43 43 43 VAL VAL A . n A 1 44 THR 44 44 44 THR THR A . n A 1 45 PRO 45 45 45 PRO PRO A . n A 1 46 GLU 46 46 46 GLU GLU A . n A 1 47 GLY 47 47 47 GLY GLY A . n A 1 48 TYR 48 48 48 TYR TYR A . n A 1 49 ASP 49 49 49 ASP ASP A . n A 1 50 ALA 50 50 50 ALA ALA A . n A 1 51 VAL 51 51 51 VAL VAL A . n A 1 52 ILE 52 52 52 ILE ILE A . n A 1 53 GLU 53 53 53 GLU GLU A . n A 1 54 SER 54 54 54 SER SER A . n A 1 55 VAL 55 55 55 VAL VAL A . n A 1 56 VAL 56 56 56 VAL VAL A . n A 1 57 ASP 57 57 57 ASP ASP A . n A 1 58 HIS 58 58 58 HIS HIS A . n A 1 59 ALA 59 59 59 ALA ALA A . n A 1 60 ARG 60 60 60 ARG ARG A . n A 1 61 ARG 61 61 61 ARG ARG A . n A 1 62 LEU 62 62 62 LEU LEU A . n A 1 63 GLN 63 63 63 GLN GLN A . n A 1 64 LYS 64 64 64 LYS LYS A . n A 1 65 GLN 65 65 65 GLN GLN A . n A 1 66 GLY 66 66 66 GLY GLY A . n A 1 67 ALA 67 67 67 ALA ALA A . n A 1 68 ALA 68 68 68 ALA ALA A . n A 1 69 VAL 69 69 69 VAL VAL A . n A 1 70 VAL 70 70 70 VAL VAL A . n A 1 71 SER 71 71 71 SER SER A . n A 1 72 LEU 72 72 72 LEU LEU A . n A 1 73 MET 73 73 73 MET MET A . n A 1 74 CYS 74 74 74 CYS CYS A . n A 1 75 THR 75 75 75 THR THR A . n A 1 76 SER 76 76 76 SER SER A . n A 1 77 LEU 77 77 77 LEU LEU A . n A 1 78 SER 78 78 78 SER SER A . n A 1 79 PHE 79 79 79 PHE PHE A . n A 1 80 TYR 80 80 80 TYR TYR A . n A 1 81 ARG 81 81 81 ARG ARG A . n A 1 82 GLY 82 82 82 GLY GLY A . n A 1 83 ALA 83 83 83 ALA ALA A . n A 1 84 ALA 84 84 84 ALA ALA A . n A 1 85 PHE 85 85 85 PHE PHE A . n A 1 86 ASN 86 86 86 ASN ASN A . n A 1 87 ALA 87 87 87 ALA ALA A . n A 1 88 ALA 88 88 88 ALA ALA A . n A 1 89 LEU 89 89 89 LEU LEU A . n A 1 90 THR 90 90 90 THR THR A . n A 1 91 VAL 91 91 91 VAL VAL A . n A 1 92 ALA 92 92 92 ALA ALA A . n A 1 93 MET 93 93 93 MET MET A . n A 1 94 ARG 94 94 94 ARG ARG A . n A 1 95 GLU 95 95 95 GLU GLU A . n A 1 96 ALA 96 96 96 ALA ALA A . n A 1 97 THR 97 97 97 THR THR A . n A 1 98 GLY 98 98 98 GLY GLY A . n A 1 99 LEU 99 99 99 LEU LEU A . n A 1 100 PRO 100 100 100 PRO PRO A . n A 1 101 CYS 101 101 101 CYS CYS A . n A 1 102 THR 102 102 102 THR THR A . n A 1 103 THR 103 103 103 THR THR A . n A 1 104 MET 104 104 104 MET MET A . n A 1 105 SER 105 105 105 SER SER A . n A 1 106 THR 106 106 106 THR THR A . n A 1 107 ALA 107 107 107 ALA ALA A . n A 1 108 VAL 108 108 108 VAL VAL A . n A 1 109 LEU 109 109 109 LEU LEU A . n A 1 110 ASN 110 110 110 ASN ASN A . n A 1 111 GLY 111 111 111 GLY GLY A . n A 1 112 LEU 112 112 112 LEU LEU A . n A 1 113 ARG 113 113 113 ARG ARG A . n A 1 114 ALA 114 114 114 ALA ALA A . n A 1 115 LEU 115 115 115 LEU LEU A . n A 1 116 GLY 116 116 116 GLY GLY A . n A 1 117 VAL 117 117 117 VAL VAL A . n A 1 118 ARG 118 118 118 ARG ARG A . n A 1 119 ARG 119 119 119 ARG ARG A . n A 1 120 VAL 120 120 120 VAL VAL A . n A 1 121 ALA 121 121 121 ALA ALA A . n A 1 122 LEU 122 122 122 LEU LEU A . n A 1 123 ALA 123 123 123 ALA ALA A . n A 1 124 THR 124 124 124 THR THR A . n A 1 125 ALA 125 125 125 ALA ALA A . n A 1 126 TYR 126 126 126 TYR TYR A . n A 1 127 ILE 127 127 127 ILE ILE A . n A 1 128 ASP 128 128 128 ASP ASP A . n A 1 129 ASP 129 129 129 ASP ASP A . n A 1 130 VAL 130 130 130 VAL VAL A . n A 1 131 ASN 131 131 131 ASN ASN A . n A 1 132 GLU 132 132 132 GLU GLU A . n A 1 133 ARG 133 133 133 ARG ARG A . n A 1 134 LEU 134 134 134 LEU LEU A . n A 1 135 ALA 135 135 135 ALA ALA A . n A 1 136 ALA 136 136 136 ALA ALA A . n A 1 137 PHE 137 137 137 PHE PHE A . n A 1 138 LEU 138 138 138 LEU LEU A . n A 1 139 ALA 139 139 139 ALA ALA A . n A 1 140 GLU 140 140 140 GLU GLU A . n A 1 141 GLU 141 141 141 GLU GLU A . n A 1 142 SER 142 142 142 SER SER A . n A 1 143 LEU 143 143 143 LEU LEU A . n A 1 144 VAL 144 144 144 VAL VAL A . n A 1 145 PRO 145 145 145 PRO PRO A . n A 1 146 THR 146 146 146 THR THR A . n A 1 147 GLY 147 147 147 GLY GLY A . n A 1 148 CYS 148 148 148 CYS CYS A . n A 1 149 ARG 149 149 149 ARG ARG A . n A 1 150 SER 150 150 150 SER SER A . n A 1 151 LEU 151 151 151 LEU LEU A . n A 1 152 GLY 152 152 152 GLY GLY A . n A 1 153 ILE 153 153 153 ILE ILE A . n A 1 154 THR 154 154 154 THR THR A . n A 1 155 GLY 155 155 155 GLY GLY A . n A 1 156 VAL 156 156 156 VAL VAL A . n A 1 157 GLU 157 157 157 GLU GLU A . n A 1 158 ALA 158 158 158 ALA ALA A . n A 1 159 MET 159 159 159 MET MET A . n A 1 160 ALA 160 160 160 ALA ALA A . n A 1 161 ARG 161 161 161 ARG ARG A . n A 1 162 VAL 162 162 162 VAL VAL A . n A 1 163 ASP 163 163 163 ASP ASP A . n A 1 164 THR 164 164 164 THR THR A . n A 1 165 ALA 165 165 165 ALA ALA A . n A 1 166 THR 166 166 166 THR THR A . n A 1 167 LEU 167 167 167 LEU LEU A . n A 1 168 VAL 168 168 168 VAL VAL A . n A 1 169 ASP 169 169 169 ASP ASP A . n A 1 170 LEU 170 170 170 LEU LEU A . n A 1 171 CYS 171 171 171 CYS CYS A . n A 1 172 VAL 172 172 172 VAL VAL A . n A 1 173 ARG 173 173 173 ARG ARG A . n A 1 174 ALA 174 174 174 ALA ALA A . n A 1 175 PHE 175 175 175 PHE PHE A . n A 1 176 GLU 176 176 176 GLU GLU A . n A 1 177 ALA 177 177 177 ALA ALA A . n A 1 178 ALA 178 178 178 ALA ALA A . n A 1 179 PRO 179 179 179 PRO PRO A . n A 1 180 ASP 180 180 180 ASP ASP A . n A 1 181 SER 181 181 181 SER SER A . n A 1 182 ASP 182 182 182 ASP ASP A . n A 1 183 GLY 183 183 183 GLY GLY A . n A 1 184 ILE 184 184 184 ILE ILE A . n A 1 185 LEU 185 185 185 LEU LEU A . n A 1 186 LEU 186 186 186 LEU LEU A . n A 1 187 SER 187 187 187 SER SER A . n A 1 188 CYS 188 188 188 CYS CYS A . n A 1 189 GLY 189 189 189 GLY GLY A . n A 1 190 GLY 190 190 190 GLY GLY A . n A 1 191 LEU 191 191 191 LEU LEU A . n A 1 192 LEU 192 192 192 LEU LEU A . n A 1 193 THR 193 193 193 THR THR A . n A 1 194 LEU 194 194 194 LEU LEU A . n A 1 195 ASP 195 195 195 ASP ASP A . n A 1 196 ALA 196 196 196 ALA ALA A . n A 1 197 ILE 197 197 197 ILE ILE A . n A 1 198 PRO 198 198 198 PRO PRO A . n A 1 199 GLU 199 199 199 GLU GLU A . n A 1 200 VAL 200 200 200 VAL VAL A . n A 1 201 GLU 201 201 201 GLU GLU A . n A 1 202 ARG 202 202 202 ARG ARG A . n A 1 203 ARG 203 203 203 ARG ARG A . n A 1 204 LEU 204 204 204 LEU LEU A . n A 1 205 GLY 205 205 205 GLY GLY A . n A 1 206 VAL 206 206 206 VAL VAL A . n A 1 207 PRO 207 207 207 PRO PRO A . n A 1 208 VAL 208 208 208 VAL VAL A . n A 1 209 VAL 209 209 209 VAL VAL A . n A 1 210 SER 210 210 210 SER SER A . n A 1 211 SER 211 211 211 SER SER A . n A 1 212 SER 212 212 212 SER SER A . n A 1 213 PRO 213 213 213 PRO PRO A . n A 1 214 ALA 214 214 214 ALA ALA A . n A 1 215 GLY 215 215 215 GLY GLY A . n A 1 216 PHE 216 216 216 PHE PHE A . n A 1 217 TRP 217 217 217 TRP TRP A . n A 1 218 ASP 218 218 218 ASP ASP A . n A 1 219 ALA 219 219 219 ALA ALA A . n A 1 220 VAL 220 220 220 VAL VAL A . n A 1 221 ARG 221 221 221 ARG ARG A . n A 1 222 LEU 222 222 222 LEU LEU A . n A 1 223 ALA 223 223 223 ALA ALA A . n A 1 224 GLY 224 224 224 GLY GLY A . n A 1 225 GLY 225 225 225 GLY GLY A . n A 1 226 GLY 226 226 226 GLY GLY A . n A 1 227 ALA 227 227 227 ALA ALA A . n A 1 228 LYS 228 228 228 LYS LYS A . n A 1 229 ALA 229 229 229 ALA ALA A . n A 1 230 ARG 230 230 230 ARG ARG A . n A 1 231 PRO 231 231 231 PRO PRO A . n A 1 232 GLY 232 232 232 GLY GLY A . n A 1 233 TYR 233 233 233 TYR TYR A . n A 1 234 GLY 234 234 234 GLY GLY A . n A 1 235 ARG 235 235 235 ARG ARG A . n A 1 236 LEU 236 236 236 LEU LEU A . n A 1 237 PHE 237 237 237 PHE PHE A . n A 1 238 ASP 238 238 238 ASP ASP A . n A 1 239 GLU 239 239 239 GLU GLU A . n A 1 240 SER 240 240 ? ? ? A . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2010-02-23 2 'Structure model' 1 1 2011-07-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Version format compliance' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal AMoRE phasing . ? 1 REFMAC refinement 5.2.0019 ? 2 HKL-2000 'data reduction' . ? 3 HKL-2000 'data scaling' . ? 4 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A ARG 26 ? NE ? A ARG 26 NE 2 1 Y 1 A ARG 26 ? CZ ? A ARG 26 CZ 3 1 Y 1 A ARG 26 ? NH1 ? A ARG 26 NH1 4 1 Y 1 A ARG 26 ? NH2 ? A ARG 26 NH2 5 1 Y 1 A ARG 230 ? NE ? A ARG 230 NE 6 1 Y 1 A ARG 230 ? CZ ? A ARG 230 CZ 7 1 Y 1 A ARG 230 ? NH1 ? A ARG 230 NH1 8 1 Y 1 A ARG 230 ? NH2 ? A ARG 230 NH2 9 1 Y 1 A GLU 239 ? CG ? A GLU 239 CG 10 1 Y 1 A GLU 239 ? CD ? A GLU 239 CD 11 1 Y 1 A GLU 239 ? OE1 ? A GLU 239 OE1 12 1 Y 1 A GLU 239 ? OE2 ? A GLU 239 OE2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET 1 ? A MET 1 2 1 Y 1 A GLN 2 ? A GLN 2 3 1 Y 1 A GLN 3 ? A GLN 3 4 1 Y 1 A ALA 4 ? A ALA 4 5 1 Y 1 A SER 5 ? A SER 5 6 1 Y 1 A THR 6 ? A THR 6 7 1 Y 1 A SER 240 ? A SER 240 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'SULFATE ION' SO4 3 water HOH # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 1 6001 6001 SO4 SO4 A . C 2 SO4 1 6002 6002 SO4 SO4 A . D 3 HOH 1 1001 1001 HOH HOH A . D 3 HOH 2 1002 1002 HOH HOH A . D 3 HOH 3 1003 1003 HOH HOH A . D 3 HOH 4 1004 1004 HOH HOH A . D 3 HOH 5 1005 1005 HOH HOH A . D 3 HOH 6 1006 1006 HOH HOH A . D 3 HOH 7 1007 1007 HOH HOH A . D 3 HOH 8 1008 1008 HOH HOH A . D 3 HOH 9 1009 1009 HOH HOH A . D 3 HOH 10 1010 1010 HOH HOH A . D 3 HOH 11 1011 1011 HOH HOH A . D 3 HOH 12 1012 1012 HOH HOH A . D 3 HOH 13 1013 1013 HOH HOH A . D 3 HOH 14 1014 1014 HOH HOH A . D 3 HOH 15 1016 1016 HOH HOH A . D 3 HOH 16 1017 1017 HOH HOH A . D 3 HOH 17 1018 1018 HOH HOH A . D 3 HOH 18 1019 1019 HOH HOH A . D 3 HOH 19 1020 1020 HOH HOH A . D 3 HOH 20 1021 1021 HOH HOH A . D 3 HOH 21 1022 1022 HOH HOH A . D 3 HOH 22 1023 1023 HOH HOH A . D 3 HOH 23 1024 1024 HOH HOH A . D 3 HOH 24 1025 1025 HOH HOH A . D 3 HOH 25 1026 1026 HOH HOH A . D 3 HOH 26 1027 1027 HOH HOH A . D 3 HOH 27 1028 1028 HOH HOH A . D 3 HOH 28 1029 1029 HOH HOH A . D 3 HOH 29 1030 1030 HOH HOH A . D 3 HOH 30 1031 1031 HOH HOH A . D 3 HOH 31 1033 1033 HOH HOH A . D 3 HOH 32 1034 1034 HOH HOH A . D 3 HOH 33 1040 1040 HOH HOH A . D 3 HOH 34 1041 1041 HOH HOH A . D 3 HOH 35 1045 1045 HOH HOH A . D 3 HOH 36 1047 1047 HOH HOH A . D 3 HOH 37 1048 1048 HOH HOH A . D 3 HOH 38 1049 1049 HOH HOH A . D 3 HOH 39 1050 1050 HOH HOH A . D 3 HOH 40 1051 1051 HOH HOH A . D 3 HOH 41 1052 1052 HOH HOH A . D 3 HOH 42 1053 1053 HOH HOH A . D 3 HOH 43 1054 1054 HOH HOH A . D 3 HOH 44 1055 1055 HOH HOH A . D 3 HOH 45 1056 1056 HOH HOH A . D 3 HOH 46 1057 1057 HOH HOH A . D 3 HOH 47 1058 1058 HOH HOH A . D 3 HOH 48 1059 1059 HOH HOH A . D 3 HOH 49 1060 1060 HOH HOH A . D 3 HOH 50 1061 1061 HOH HOH A . D 3 HOH 51 1062 1062 HOH HOH A . D 3 HOH 52 1063 1063 HOH HOH A . D 3 HOH 53 1064 1064 HOH HOH A . D 3 HOH 54 1065 1065 HOH HOH A . D 3 HOH 55 1066 1066 HOH HOH A . D 3 HOH 56 1067 1067 HOH HOH A . D 3 HOH 57 1068 1068 HOH HOH A . D 3 HOH 58 1069 1069 HOH HOH A . D 3 HOH 59 1070 1070 HOH HOH A . D 3 HOH 60 1071 1071 HOH HOH A . D 3 HOH 61 1072 1072 HOH HOH A . D 3 HOH 62 1073 1073 HOH HOH A . D 3 HOH 63 1074 1074 HOH HOH A . D 3 HOH 64 1075 1075 HOH HOH A . D 3 HOH 65 1076 1076 HOH HOH A . D 3 HOH 66 1077 1077 HOH HOH A . D 3 HOH 67 1078 1078 HOH HOH A . D 3 HOH 68 1079 1079 HOH HOH A . D 3 HOH 69 1080 1080 HOH HOH A . D 3 HOH 70 1084 1084 HOH HOH A . D 3 HOH 71 1085 1085 HOH HOH A . D 3 HOH 72 1086 1086 HOH HOH A . D 3 HOH 73 1087 1087 HOH HOH A . D 3 HOH 74 1088 1088 HOH HOH A . D 3 HOH 75 1091 1091 HOH HOH A . D 3 HOH 76 1092 1092 HOH HOH A . D 3 HOH 77 1093 1093 HOH HOH A . D 3 HOH 78 1094 1094 HOH HOH A . D 3 HOH 79 1095 1095 HOH HOH A . D 3 HOH 80 1096 1096 HOH HOH A . D 3 HOH 81 1097 1097 HOH HOH A . D 3 HOH 82 1098 1098 HOH HOH A . D 3 HOH 83 1099 1099 HOH HOH A . D 3 HOH 84 1100 1100 HOH HOH A . D 3 HOH 85 1101 1101 HOH HOH A . D 3 HOH 86 1102 1102 HOH HOH A . D 3 HOH 87 1103 1103 HOH HOH A . D 3 HOH 88 1104 1104 HOH HOH A . D 3 HOH 89 1107 1107 HOH HOH A . D 3 HOH 90 1108 1108 HOH HOH A . D 3 HOH 91 1111 1111 HOH HOH A . D 3 HOH 92 1113 1113 HOH HOH A . D 3 HOH 93 1114 1114 HOH HOH A . D 3 HOH 94 1115 1115 HOH HOH A . D 3 HOH 95 1116 1116 HOH HOH A . D 3 HOH 96 1117 1117 HOH HOH A . D 3 HOH 97 1118 1118 HOH HOH A . D 3 HOH 98 1119 1119 HOH HOH A . D 3 HOH 99 1123 1123 HOH HOH A . D 3 HOH 100 1124 1124 HOH HOH A . D 3 HOH 101 1127 1127 HOH HOH A . D 3 HOH 102 1128 1128 HOH HOH A . D 3 HOH 103 1129 1129 HOH HOH A . D 3 HOH 104 1130 1130 HOH HOH A . D 3 HOH 105 1131 1131 HOH HOH A . D 3 HOH 106 1132 1132 HOH HOH A . D 3 HOH 107 1133 1133 HOH HOH A . D 3 HOH 108 1134 1134 HOH HOH A . D 3 HOH 109 1135 1135 HOH HOH A . D 3 HOH 110 1136 1136 HOH HOH A . D 3 HOH 111 1137 1137 HOH HOH A . D 3 HOH 112 1138 1138 HOH HOH A . D 3 HOH 113 1139 1139 HOH HOH A . D 3 HOH 114 1140 1140 HOH HOH A . D 3 HOH 115 1141 1141 HOH HOH A . D 3 HOH 116 1142 1142 HOH HOH A . D 3 HOH 117 1143 1143 HOH HOH A . D 3 HOH 118 1144 1144 HOH HOH A . D 3 HOH 119 1145 1145 HOH HOH A . D 3 HOH 120 1148 1148 HOH HOH A . D 3 HOH 121 1149 1149 HOH HOH A . D 3 HOH 122 1150 1150 HOH HOH A . D 3 HOH 123 1152 1152 HOH HOH A . D 3 HOH 124 1153 1153 HOH HOH A . D 3 HOH 125 1154 1154 HOH HOH A . D 3 HOH 126 1156 1156 HOH HOH A . D 3 HOH 127 1158 1158 HOH HOH A . D 3 HOH 128 1159 1159 HOH HOH A . D 3 HOH 129 1160 1160 HOH HOH A . D 3 HOH 130 1162 1162 HOH HOH A . D 3 HOH 131 1163 1163 HOH HOH A . D 3 HOH 132 1164 1164 HOH HOH A . D 3 HOH 133 1165 1165 HOH HOH A . D 3 HOH 134 1166 1166 HOH HOH A . D 3 HOH 135 1167 1167 HOH HOH A . D 3 HOH 136 1168 1168 HOH HOH A . D 3 HOH 137 1169 1169 HOH HOH A . D 3 HOH 138 1170 1170 HOH HOH A . D 3 HOH 139 1171 1171 HOH HOH A . D 3 HOH 140 1173 1173 HOH HOH A . D 3 HOH 141 1174 1174 HOH HOH A . D 3 HOH 142 1175 1175 HOH HOH A . D 3 HOH 143 1176 1176 HOH HOH A . D 3 HOH 144 1177 1177 HOH HOH A . D 3 HOH 145 1178 1178 HOH HOH A . D 3 HOH 146 1179 1179 HOH HOH A . D 3 HOH 147 1180 1180 HOH HOH A . D 3 HOH 148 1181 1181 HOH HOH A . D 3 HOH 149 1182 1182 HOH HOH A . D 3 HOH 150 1183 1183 HOH HOH A . D 3 HOH 151 1184 1184 HOH HOH A . D 3 HOH 152 1185 1185 HOH HOH A . D 3 HOH 153 1186 1186 HOH HOH A . D 3 HOH 154 1187 1187 HOH HOH A . D 3 HOH 155 1189 1189 HOH HOH A . D 3 HOH 156 1191 1191 HOH HOH A . D 3 HOH 157 1192 1192 HOH HOH A . D 3 HOH 158 1193 1193 HOH HOH A . D 3 HOH 159 1194 1194 HOH HOH A . D 3 HOH 160 1196 1196 HOH HOH A . D 3 HOH 161 1197 1197 HOH HOH A . #