HEADER ISOMERASE 04-SEP-09 3IXQ TITLE STRUCTURE OF RIBOSE 5-PHOSPHATE ISOMERASE A FROM METHANOCALDOCOCCUS TITLE 2 JANNASCHII COMPND MOL_ID: 1; COMPND 2 MOLECULE: RIBOSE-5-PHOSPHATE ISOMERASE A; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: PHOSPHORIBOISOMERASE A, PRI; COMPND 5 EC: 5.3.1.6; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: METHANOCALDOCOCCUS JANNASCHII; SOURCE 3 ORGANISM_TAXID: 2190; SOURCE 4 STRAIN: DSM2661; SOURCE 5 GENE: RPIA, MJ1603; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ROSETTA(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET-21A KEYWDS STRUCTURAL GENOMICS, ISOMERASE, PENTOSE PHOSPHATE PATHWAY, CARBON KEYWDS 2 FIXATION, NPPSFA, NATIONAL PROJECT ON PROTEIN STRUCTURAL AND KEYWDS 3 FUNCTIONAL ANALYSES, RIKEN STRUCTURAL GENOMICS/PROTEOMICS KEYWDS 4 INITIATIVE, RSGI, CARBOHYDRATE METABOLISM EXPDTA X-RAY DIFFRACTION AUTHOR S.V.ANTONYUK,M.J.ELLIS,R.W.STRANGE,S.S.HASNAIN,Y.BESSHO,S.KURAMITSU, AUTHOR 2 S.YOKOYAMA,RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 4 01-NOV-23 3IXQ 1 REMARK REVDAT 3 01-NOV-17 3IXQ 1 REMARK REVDAT 2 09-FEB-10 3IXQ 1 JRNL REVDAT 1 06-OCT-09 3IXQ 0 SPRSDE 06-OCT-09 3IXQ 2PJM JRNL AUTH R.W.STRANGE,S.V.ANTONYUK,M.J.ELLIS,Y.BESSHO,S.KURAMITSU, JRNL AUTH 2 S.YOKOYAMA,S.S.HASNAIN JRNL TITL THE STRUCTURE OF AN ARCHAEAL RIBOSE-5-PHOSPHATE ISOMERASE JRNL TITL 2 FROM METHANOCALDOCOCCUS JANNASCHII (MJ1603). JRNL REF ACTA CRYSTALLOGR.,SECT.F V. 65 1214 2009 JRNL REFN ESSN 1744-3091 JRNL PMID 20054114 JRNL DOI 10.1107/S1744309109044923 REMARK 2 REMARK 2 RESOLUTION. 1.78 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.78 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.6 REMARK 3 NUMBER OF REFLECTIONS : 81022 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.150 REMARK 3 R VALUE (WORKING SET) : 0.148 REMARK 3 FREE R VALUE : 0.188 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4045 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.78 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.83 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5553 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.37 REMARK 3 BIN R VALUE (WORKING SET) : 0.1990 REMARK 3 BIN FREE R VALUE SET COUNT : 302 REMARK 3 BIN FREE R VALUE : 0.2560 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6936 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 63 REMARK 3 SOLVENT ATOMS : 882 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 17.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.94 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.42000 REMARK 3 B22 (A**2) : -0.60000 REMARK 3 B33 (A**2) : 0.24000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.66000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.117 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.112 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.071 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.207 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.965 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.944 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 7453 ; 0.015 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 5161 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 10109 ; 1.469 ; 2.003 REMARK 3 BOND ANGLES OTHERS (DEGREES): 12826 ; 1.015 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 1007 ; 6.038 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 308 ;42.390 ;25.844 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1491 ;12.942 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 34 ;15.181 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1212 ; 0.088 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 8200 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1334 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1433 ; 0.218 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 5692 ; 0.191 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3629 ; 0.168 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 3995 ; 0.083 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 656 ; 0.167 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 22 ; 0.286 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 52 ; 0.267 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 31 ; 0.199 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 6192 ; 1.186 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1912 ; 0.225 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 7582 ; 1.310 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3165 ; 2.346 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2471 ; 3.246 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3IXQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 10-SEP-09. REMARK 100 THE DEPOSITION ID IS D_1000054996. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-MAR-07 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 4.75 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SRS REMARK 200 BEAMLINE : PX10.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.074 REMARK 200 MONOCHROMATOR : SAGITALLY FOCUSED SI(111) REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 94575 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 200 DATA REDUNDANCY : 8.000 REMARK 200 R MERGE (I) : 0.10400 REMARK 200 R SYM (I) : 0.08700 REMARK 200 FOR THE DATA SET : 13.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.76 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.3 REMARK 200 DATA REDUNDANCY IN SHELL : 5.10 REMARK 200 R MERGE FOR SHELL (I) : 0.39200 REMARK 200 R SYM FOR SHELL (I) : 0.38000 REMARK 200 FOR SHELL : 4.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 1KL5 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.68 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.22 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20MM TRIS-HCL PH 8.0, 200MM NACL. 40% REMARK 280 V/V 1,2-PROPANEDIOL, 0.1M ACETATE PH 4.5, 0.05M CA ACETATE, OIL REMARK 280 BATCH (TERA), TEMPERATURE 298.0K, PH 4.75 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 50.13650 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: FULL TETRAMER IS IN A.U. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 11240 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 33210 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -44.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 MET B 1 REMARK 465 MET C 1 REMARK 465 MET D 1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 93 19.56 59.62 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 231 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PGO A 234 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PGO A 232 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PGO A 233 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 231 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PGO B 233 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PGO B 234 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PGO B 235 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL C 231 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PGO C 233 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PGO C 234 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT C 227 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL D 231 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PGO D 232 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PGO D 233 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PGO D 234 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: MJA001001603.1 RELATED DB: TARGETDB DBREF 3IXQ A 1 226 UNP Q58998 RPIA_METJA 1 226 DBREF 3IXQ B 1 226 UNP Q58998 RPIA_METJA 1 226 DBREF 3IXQ C 1 226 UNP Q58998 RPIA_METJA 1 226 DBREF 3IXQ D 1 226 UNP Q58998 RPIA_METJA 1 226 SEQRES 1 A 226 MET SER ASN GLU ASP LEU LYS LEU LYS VAL ALA LYS GLU SEQRES 2 A 226 ALA VAL LYS LEU VAL LYS ASP GLY MET VAL ILE GLY LEU SEQRES 3 A 226 GLY THR GLY SER THR ALA ALA LEU PHE ILE ARG GLU LEU SEQRES 4 A 226 GLY ASN ARG ILE ARG GLU GLU GLU LEU THR VAL PHE GLY SEQRES 5 A 226 ILE PRO THR SER PHE GLU ALA LYS MET LEU ALA MET GLN SEQRES 6 A 226 TYR GLU ILE PRO LEU VAL THR LEU ASP GLU TYR ASP VAL SEQRES 7 A 226 ASP ILE ALA PHE ASP GLY ALA ASP GLU VAL GLU GLU THR SEQRES 8 A 226 THR LEU PHE LEU ILE LYS GLY GLY GLY GLY CYS HIS THR SEQRES 9 A 226 GLN GLU LYS ILE VAL ASP TYR ASN ALA ASN GLU PHE VAL SEQRES 10 A 226 VAL LEU VAL ASP GLU SER LYS LEU VAL LYS LYS LEU GLY SEQRES 11 A 226 GLU LYS PHE PRO ILE PRO VAL GLU VAL ILE PRO SER ALA SEQRES 12 A 226 TYR ARG VAL VAL ILE ARG ALA LEU SER GLU MET GLY GLY SEQRES 13 A 226 GLU ALA VAL ILE ARG LEU GLY ASP ARG LYS ARG GLY PRO SEQRES 14 A 226 VAL ILE THR ASP ASN GLY ASN MET ILE ILE ASP VAL PHE SEQRES 15 A 226 MET ASN ILE ASP ASP ALA ILE GLU LEU GLU LYS GLU ILE SEQRES 16 A 226 ASN ASN ILE PRO GLY VAL VAL GLU ASN GLY ILE PHE THR SEQRES 17 A 226 LYS VAL ASP LYS VAL LEU VAL GLY THR LYS LYS GLY VAL SEQRES 18 A 226 LYS THR LEU LYS LYS SEQRES 1 B 226 MET SER ASN GLU ASP LEU LYS LEU LYS VAL ALA LYS GLU SEQRES 2 B 226 ALA VAL LYS LEU VAL LYS ASP GLY MET VAL ILE GLY LEU SEQRES 3 B 226 GLY THR GLY SER THR ALA ALA LEU PHE ILE ARG GLU LEU SEQRES 4 B 226 GLY ASN ARG ILE ARG GLU GLU GLU LEU THR VAL PHE GLY SEQRES 5 B 226 ILE PRO THR SER PHE GLU ALA LYS MET LEU ALA MET GLN SEQRES 6 B 226 TYR GLU ILE PRO LEU VAL THR LEU ASP GLU TYR ASP VAL SEQRES 7 B 226 ASP ILE ALA PHE ASP GLY ALA ASP GLU VAL GLU GLU THR SEQRES 8 B 226 THR LEU PHE LEU ILE LYS GLY GLY GLY GLY CYS HIS THR SEQRES 9 B 226 GLN GLU LYS ILE VAL ASP TYR ASN ALA ASN GLU PHE VAL SEQRES 10 B 226 VAL LEU VAL ASP GLU SER LYS LEU VAL LYS LYS LEU GLY SEQRES 11 B 226 GLU LYS PHE PRO ILE PRO VAL GLU VAL ILE PRO SER ALA SEQRES 12 B 226 TYR ARG VAL VAL ILE ARG ALA LEU SER GLU MET GLY GLY SEQRES 13 B 226 GLU ALA VAL ILE ARG LEU GLY ASP ARG LYS ARG GLY PRO SEQRES 14 B 226 VAL ILE THR ASP ASN GLY ASN MET ILE ILE ASP VAL PHE SEQRES 15 B 226 MET ASN ILE ASP ASP ALA ILE GLU LEU GLU LYS GLU ILE SEQRES 16 B 226 ASN ASN ILE PRO GLY VAL VAL GLU ASN GLY ILE PHE THR SEQRES 17 B 226 LYS VAL ASP LYS VAL LEU VAL GLY THR LYS LYS GLY VAL SEQRES 18 B 226 LYS THR LEU LYS LYS SEQRES 1 C 226 MET SER ASN GLU ASP LEU LYS LEU LYS VAL ALA LYS GLU SEQRES 2 C 226 ALA VAL LYS LEU VAL LYS ASP GLY MET VAL ILE GLY LEU SEQRES 3 C 226 GLY THR GLY SER THR ALA ALA LEU PHE ILE ARG GLU LEU SEQRES 4 C 226 GLY ASN ARG ILE ARG GLU GLU GLU LEU THR VAL PHE GLY SEQRES 5 C 226 ILE PRO THR SER PHE GLU ALA LYS MET LEU ALA MET GLN SEQRES 6 C 226 TYR GLU ILE PRO LEU VAL THR LEU ASP GLU TYR ASP VAL SEQRES 7 C 226 ASP ILE ALA PHE ASP GLY ALA ASP GLU VAL GLU GLU THR SEQRES 8 C 226 THR LEU PHE LEU ILE LYS GLY GLY GLY GLY CYS HIS THR SEQRES 9 C 226 GLN GLU LYS ILE VAL ASP TYR ASN ALA ASN GLU PHE VAL SEQRES 10 C 226 VAL LEU VAL ASP GLU SER LYS LEU VAL LYS LYS LEU GLY SEQRES 11 C 226 GLU LYS PHE PRO ILE PRO VAL GLU VAL ILE PRO SER ALA SEQRES 12 C 226 TYR ARG VAL VAL ILE ARG ALA LEU SER GLU MET GLY GLY SEQRES 13 C 226 GLU ALA VAL ILE ARG LEU GLY ASP ARG LYS ARG GLY PRO SEQRES 14 C 226 VAL ILE THR ASP ASN GLY ASN MET ILE ILE ASP VAL PHE SEQRES 15 C 226 MET ASN ILE ASP ASP ALA ILE GLU LEU GLU LYS GLU ILE SEQRES 16 C 226 ASN ASN ILE PRO GLY VAL VAL GLU ASN GLY ILE PHE THR SEQRES 17 C 226 LYS VAL ASP LYS VAL LEU VAL GLY THR LYS LYS GLY VAL SEQRES 18 C 226 LYS THR LEU LYS LYS SEQRES 1 D 226 MET SER ASN GLU ASP LEU LYS LEU LYS VAL ALA LYS GLU SEQRES 2 D 226 ALA VAL LYS LEU VAL LYS ASP GLY MET VAL ILE GLY LEU SEQRES 3 D 226 GLY THR GLY SER THR ALA ALA LEU PHE ILE ARG GLU LEU SEQRES 4 D 226 GLY ASN ARG ILE ARG GLU GLU GLU LEU THR VAL PHE GLY SEQRES 5 D 226 ILE PRO THR SER PHE GLU ALA LYS MET LEU ALA MET GLN SEQRES 6 D 226 TYR GLU ILE PRO LEU VAL THR LEU ASP GLU TYR ASP VAL SEQRES 7 D 226 ASP ILE ALA PHE ASP GLY ALA ASP GLU VAL GLU GLU THR SEQRES 8 D 226 THR LEU PHE LEU ILE LYS GLY GLY GLY GLY CYS HIS THR SEQRES 9 D 226 GLN GLU LYS ILE VAL ASP TYR ASN ALA ASN GLU PHE VAL SEQRES 10 D 226 VAL LEU VAL ASP GLU SER LYS LEU VAL LYS LYS LEU GLY SEQRES 11 D 226 GLU LYS PHE PRO ILE PRO VAL GLU VAL ILE PRO SER ALA SEQRES 12 D 226 TYR ARG VAL VAL ILE ARG ALA LEU SER GLU MET GLY GLY SEQRES 13 D 226 GLU ALA VAL ILE ARG LEU GLY ASP ARG LYS ARG GLY PRO SEQRES 14 D 226 VAL ILE THR ASP ASN GLY ASN MET ILE ILE ASP VAL PHE SEQRES 15 D 226 MET ASN ILE ASP ASP ALA ILE GLU LEU GLU LYS GLU ILE SEQRES 16 D 226 ASN ASN ILE PRO GLY VAL VAL GLU ASN GLY ILE PHE THR SEQRES 17 D 226 LYS VAL ASP LYS VAL LEU VAL GLY THR LYS LYS GLY VAL SEQRES 18 D 226 LYS THR LEU LYS LYS HET CL A 231 1 HET PGO A 234 5 HET PGO A 232 5 HET PGO A 233 5 HET CL B 231 1 HET PGO B 233 5 HET PGO B 234 5 HET PGO B 235 5 HET CL C 231 1 HET PGO C 233 6 HET PGO C 234 5 HET ACT C 227 4 HET CL D 231 1 HET PGO D 232 5 HET PGO D 233 5 HET PGO D 234 10 HETNAM CL CHLORIDE ION HETNAM PGO S-1,2-PROPANEDIOL HETNAM ACT ACETATE ION FORMUL 5 CL 4(CL 1-) FORMUL 6 PGO 11(C3 H8 O2) FORMUL 16 ACT C2 H3 O2 1- FORMUL 21 HOH *882(H2 O) HELIX 1 1 ASN A 3 VAL A 15 1 13 HELIX 2 2 LYS A 16 VAL A 18 5 3 HELIX 3 3 GLY A 29 GLU A 47 1 19 HELIX 4 4 SER A 56 TYR A 66 1 11 HELIX 5 5 CYS A 102 ALA A 113 1 12 HELIX 6 6 ALA A 143 MET A 154 1 12 HELIX 7 7 ASP A 187 ASN A 197 1 11 HELIX 8 8 ASN B 3 LYS B 16 1 14 HELIX 9 9 GLY B 29 GLU B 47 1 19 HELIX 10 10 SER B 56 TYR B 66 1 11 HELIX 11 11 CYS B 102 TYR B 111 1 10 HELIX 12 12 ALA B 143 MET B 154 1 12 HELIX 13 13 ASP B 187 ASN B 197 1 11 HELIX 14 14 ASN C 3 VAL C 15 1 13 HELIX 15 15 LYS C 16 VAL C 18 5 3 HELIX 16 16 GLY C 29 GLU C 47 1 19 HELIX 17 17 SER C 56 TYR C 66 1 11 HELIX 18 18 CYS C 102 ALA C 113 1 12 HELIX 19 19 ALA C 143 MET C 154 1 12 HELIX 20 20 ASP C 187 ASN C 197 1 11 HELIX 21 21 ASN D 3 LYS D 16 1 14 HELIX 22 22 GLY D 29 GLU D 46 1 18 HELIX 23 23 SER D 56 TYR D 66 1 11 HELIX 24 24 CYS D 102 TYR D 111 1 10 HELIX 25 25 ALA D 143 MET D 154 1 12 HELIX 26 26 ASP D 187 ASN D 197 1 11 SHEET 1 A 6 PHE A 51 PRO A 54 0 SHEET 2 A 6 VAL A 23 LEU A 26 1 N LEU A 26 O ILE A 53 SHEET 3 A 6 ILE A 80 ASP A 83 1 O PHE A 82 N GLY A 25 SHEET 4 A 6 GLU A 115 ASP A 121 1 O VAL A 117 N ALA A 81 SHEET 5 A 6 LYS A 212 THR A 217 1 O LEU A 214 N VAL A 118 SHEET 6 A 6 GLY A 220 LEU A 224 -1 O LYS A 222 N VAL A 215 SHEET 1 B 4 LEU A 125 VAL A 126 0 SHEET 2 B 4 GLU A 87 GLU A 89 1 N VAL A 88 O VAL A 126 SHEET 3 B 4 LEU A 95 ILE A 96 -1 O ILE A 96 N GLU A 87 SHEET 4 B 4 ILE A 206 PHE A 207 -1 O PHE A 207 N LEU A 95 SHEET 1 C 4 GLU A 157 ILE A 160 0 SHEET 2 C 4 MET A 177 PHE A 182 -1 O ASP A 180 N VAL A 159 SHEET 3 C 4 ILE A 135 VAL A 139 -1 N ILE A 135 O VAL A 181 SHEET 4 C 4 VAL A 201 ASN A 204 -1 O GLU A 203 N GLU A 138 SHEET 1 D 6 PHE B 51 PRO B 54 0 SHEET 2 D 6 VAL B 23 LEU B 26 1 N ILE B 24 O PHE B 51 SHEET 3 D 6 ILE B 80 ASP B 83 1 O PHE B 82 N GLY B 25 SHEET 4 D 6 GLU B 115 ASP B 121 1 O VAL B 117 N ALA B 81 SHEET 5 D 6 LYS B 212 GLY B 216 1 O LEU B 214 N VAL B 118 SHEET 6 D 6 VAL B 221 LEU B 224 -1 O LEU B 224 N VAL B 213 SHEET 1 E 4 LEU B 125 VAL B 126 0 SHEET 2 E 4 GLU B 87 GLU B 89 1 N VAL B 88 O VAL B 126 SHEET 3 E 4 LEU B 95 ILE B 96 -1 O ILE B 96 N GLU B 87 SHEET 4 E 4 ILE B 206 PHE B 207 -1 O PHE B 207 N LEU B 95 SHEET 1 F 4 GLU B 157 ILE B 160 0 SHEET 2 F 4 MET B 177 PHE B 182 -1 O ASP B 180 N VAL B 159 SHEET 3 F 4 ILE B 135 VAL B 139 -1 N ILE B 135 O VAL B 181 SHEET 4 F 4 VAL B 201 ASN B 204 -1 O VAL B 202 N GLU B 138 SHEET 1 G 6 PHE C 51 PRO C 54 0 SHEET 2 G 6 VAL C 23 LEU C 26 1 N LEU C 26 O ILE C 53 SHEET 3 G 6 ILE C 80 ASP C 83 1 O ILE C 80 N GLY C 25 SHEET 4 G 6 GLU C 115 ASP C 121 1 O VAL C 117 N ALA C 81 SHEET 5 G 6 LYS C 212 THR C 217 1 O LEU C 214 N VAL C 118 SHEET 6 G 6 GLY C 220 LEU C 224 -1 O LEU C 224 N VAL C 213 SHEET 1 H 4 LEU C 125 VAL C 126 0 SHEET 2 H 4 GLU C 87 GLU C 89 1 N VAL C 88 O VAL C 126 SHEET 3 H 4 LEU C 95 ILE C 96 -1 O ILE C 96 N GLU C 87 SHEET 4 H 4 ILE C 206 PHE C 207 -1 O PHE C 207 N LEU C 95 SHEET 1 I 4 GLU C 157 ILE C 160 0 SHEET 2 I 4 MET C 177 PHE C 182 -1 O ASP C 180 N VAL C 159 SHEET 3 I 4 ILE C 135 VAL C 139 -1 N ILE C 135 O VAL C 181 SHEET 4 I 4 VAL C 201 ASN C 204 -1 O GLU C 203 N GLU C 138 SHEET 1 J 2 LEU C 162 GLY C 163 0 SHEET 2 J 2 GLY C 168 PRO C 169 -1 O GLY C 168 N GLY C 163 SHEET 1 K 6 PHE D 51 PRO D 54 0 SHEET 2 K 6 VAL D 23 LEU D 26 1 N LEU D 26 O ILE D 53 SHEET 3 K 6 ILE D 80 ASP D 83 1 O PHE D 82 N GLY D 25 SHEET 4 K 6 GLU D 115 ASP D 121 1 O LEU D 119 N ASP D 83 SHEET 5 K 6 LYS D 212 GLY D 216 1 O LEU D 214 N VAL D 118 SHEET 6 K 6 VAL D 221 LEU D 224 -1 O LYS D 222 N VAL D 215 SHEET 1 L 4 LEU D 125 VAL D 126 0 SHEET 2 L 4 GLU D 87 GLU D 89 1 N VAL D 88 O VAL D 126 SHEET 3 L 4 LEU D 95 ILE D 96 -1 O ILE D 96 N GLU D 87 SHEET 4 L 4 ILE D 206 PHE D 207 -1 O PHE D 207 N LEU D 95 SHEET 1 M 4 GLU D 157 ILE D 160 0 SHEET 2 M 4 MET D 177 PHE D 182 -1 O ASP D 180 N VAL D 159 SHEET 3 M 4 ILE D 135 VAL D 139 -1 N ILE D 135 O VAL D 181 SHEET 4 M 4 VAL D 201 ASN D 204 -1 O VAL D 202 N GLU D 138 SITE 1 AC1 6 GLY A 98 GLY A 100 GLY A 101 CYS A 102 SITE 2 AC1 6 GLU A 106 PGO A 233 SITE 1 AC2 3 ARG A 37 TYR A 66 HOH A 249 SITE 1 AC3 8 GLY A 29 SER A 30 THR A 31 LYS A 124 SITE 2 AC3 8 PGO A 233 HOH A 243 HOH A 290 HOH A 340 SITE 1 AC4 11 THR A 28 ASP A 83 GLY A 84 ALA A 85 SITE 2 AC4 11 ASP A 86 LYS A 97 GLY A 98 GLU A 106 SITE 3 AC4 11 CL A 231 PGO A 232 HOH A 371 SITE 1 AC5 6 GLY B 98 GLY B 100 GLY B 101 CYS B 102 SITE 2 AC5 6 GLU B 106 PGO B 233 SITE 1 AC6 12 ALA B 85 ASP B 86 LYS B 97 GLY B 98 SITE 2 AC6 12 GLY B 99 GLY B 100 GLU B 106 CL B 231 SITE 3 AC6 12 PGO B 235 HOH B 491 HOH B 577 HOH B 578 SITE 1 AC7 6 LEU B 70 VAL B 71 HOH B 450 HOH B 470 SITE 2 AC7 6 HOH B 494 LEU D 70 SITE 1 AC8 8 LYS B 7 GLY B 29 SER B 30 THR B 31 SITE 2 AC8 8 LYS B 124 PGO B 233 HOH B 356 HOH B 577 SITE 1 AC9 6 GLY C 98 GLY C 100 GLY C 101 CYS C 102 SITE 2 AC9 6 GLU C 106 PGO C 233 SITE 1 BC1 12 THR C 28 ASP C 83 GLY C 84 ALA C 85 SITE 2 BC1 12 ASP C 86 LYS C 97 GLY C 98 GLY C 99 SITE 3 BC1 12 GLY C 100 GLU C 106 CL C 231 PGO C 234 SITE 1 BC2 9 GLY C 29 SER C 30 THR C 31 LYS C 124 SITE 2 BC2 9 PGO C 233 HOH C 248 HOH C 249 HOH C 282 SITE 3 BC2 9 HOH C 289 SITE 1 BC3 2 LYS C 60 HOH C 431 SITE 1 BC4 6 GLY D 98 GLY D 100 GLY D 101 CYS D 102 SITE 2 BC4 6 GLU D 106 PGO D 233 SITE 1 BC5 7 LYS D 7 GLY D 29 SER D 30 THR D 31 SITE 2 BC5 7 LYS D 124 PGO D 233 HOH D 256 SITE 1 BC6 10 THR D 28 ASP D 83 GLY D 84 ALA D 85 SITE 2 BC6 10 ASP D 86 LYS D 97 GLY D 98 GLU D 106 SITE 3 BC6 10 CL D 231 PGO D 232 SITE 1 BC7 6 GLU C 58 LEU D 162 GLY D 163 LYS D 166 SITE 2 BC7 6 ARG D 167 GLY D 168 CRYST1 54.856 100.273 80.465 90.00 92.54 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018230 0.000000 0.000810 0.00000 SCALE2 0.000000 0.009973 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012440 0.00000