data_3IY1 # _entry.id 3IY1 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.296 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 3IY1 RCSB RCSB160007 WWPDB D_1000160007 # _pdbx_database_related.db_name EMDB _pdbx_database_related.db_id EMD-5106 _pdbx_database_related.content_type 'associated EM volume' _pdbx_database_related.details ;cryoEM reconstruction of the virus-Fab B complex ; # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3IY1 _pdbx_database_status.recvd_initial_deposition_date 2009-04-09 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Hafenstein, S.' 1 'Bowman, V.D.' 2 'Sun, T.' 3 'Nelson, C.D.' 4 'Palermo, L.M.' 5 'Battisti, A.J.' 6 'Parrish, C.R.' 7 'Rossmann, M.G.' 8 # _citation.id primary _citation.title 'Structural comparison of different antibodies interacting with parvovirus capsids' _citation.journal_abbrev J.Virol. _citation.journal_volume 83 _citation.page_first 5556 _citation.page_last 5566 _citation.year 2009 _citation.journal_id_ASTM JOVIAM _citation.country US _citation.journal_id_ISSN 0022-538X _citation.journal_id_CSD 0825 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 19321620 _citation.pdbx_database_id_DOI 10.1128/JVI.02532-08 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Hafenstein, S.' 1 primary 'Bowman, V.D.' 2 primary 'Sun, T.' 3 primary 'Nelson, C.D.' 4 primary 'Palermo, L.M.' 5 primary 'Chipman, P.R.' 6 primary 'Battisti, A.J.' 7 primary 'Parrish, C.R.' 8 primary 'Rossmann, M.G.' 9 # _cell.entry_id 3IY1 _cell.length_a 1.000 _cell.length_b 1.000 _cell.length_c 1.000 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3IY1 _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer nat 'Fab B, light chain' 11643.067 1 ? ? 'antibody B fragment' ? 2 polymer nat 'Fab B, heavy chain' 11773.996 1 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;LMTQIPPSLSASLGDKVTITCQASQNINKYIAWYQQKPGKVPGLLIHYTSTLVSGIPSRFSGSGSGRDYSFSISNVESED IASYYCLQYDSSPRTFGGGTKLELKRA ; ;LMTQIPPSLSASLGDKVTITCQASQNINKYIAWYQQKPGKVPGLLIHYTSTLVSGIPSRFSGSGSGRDYSFSISNVESED IASYYCLQYDSSPRTFGGGTKLELKRA ; A ? 2 'polypeptide(L)' no no ;SGAELAKPGSSVKISCKASGYTFTNYYISWIKQTTGQGLEYVGYISTGSGGTNYNEKFKGKATLTVDKSSSTTFMQLSSL TPDDSAVYYCARGDWNFDFWGPGTMVTVS ; ;SGAELAKPGSSVKISCKASGYTFTNYYISWIKQTTGQGLEYVGYISTGSGGTNYNEKFKGKATLTVDKSSSTTFMQLSSL TPDDSAVYYCARGDWNFDFWGPGTMVTVS ; B ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 LEU n 1 2 MET n 1 3 THR n 1 4 GLN n 1 5 ILE n 1 6 PRO n 1 7 PRO n 1 8 SER n 1 9 LEU n 1 10 SER n 1 11 ALA n 1 12 SER n 1 13 LEU n 1 14 GLY n 1 15 ASP n 1 16 LYS n 1 17 VAL n 1 18 THR n 1 19 ILE n 1 20 THR n 1 21 CYS n 1 22 GLN n 1 23 ALA n 1 24 SER n 1 25 GLN n 1 26 ASN n 1 27 ILE n 1 28 ASN n 1 29 LYS n 1 30 TYR n 1 31 ILE n 1 32 ALA n 1 33 TRP n 1 34 TYR n 1 35 GLN n 1 36 GLN n 1 37 LYS n 1 38 PRO n 1 39 GLY n 1 40 LYS n 1 41 VAL n 1 42 PRO n 1 43 GLY n 1 44 LEU n 1 45 LEU n 1 46 ILE n 1 47 HIS n 1 48 TYR n 1 49 THR n 1 50 SER n 1 51 THR n 1 52 LEU n 1 53 VAL n 1 54 SER n 1 55 GLY n 1 56 ILE n 1 57 PRO n 1 58 SER n 1 59 ARG n 1 60 PHE n 1 61 SER n 1 62 GLY n 1 63 SER n 1 64 GLY n 1 65 SER n 1 66 GLY n 1 67 ARG n 1 68 ASP n 1 69 TYR n 1 70 SER n 1 71 PHE n 1 72 SER n 1 73 ILE n 1 74 SER n 1 75 ASN n 1 76 VAL n 1 77 GLU n 1 78 SER n 1 79 GLU n 1 80 ASP n 1 81 ILE n 1 82 ALA n 1 83 SER n 1 84 TYR n 1 85 TYR n 1 86 CYS n 1 87 LEU n 1 88 GLN n 1 89 TYR n 1 90 ASP n 1 91 SER n 1 92 SER n 1 93 PRO n 1 94 ARG n 1 95 THR n 1 96 PHE n 1 97 GLY n 1 98 GLY n 1 99 GLY n 1 100 THR n 1 101 LYS n 1 102 LEU n 1 103 GLU n 1 104 LEU n 1 105 LYS n 1 106 ARG n 1 107 ALA n 2 1 SER n 2 2 GLY n 2 3 ALA n 2 4 GLU n 2 5 LEU n 2 6 ALA n 2 7 LYS n 2 8 PRO n 2 9 GLY n 2 10 SER n 2 11 SER n 2 12 VAL n 2 13 LYS n 2 14 ILE n 2 15 SER n 2 16 CYS n 2 17 LYS n 2 18 ALA n 2 19 SER n 2 20 GLY n 2 21 TYR n 2 22 THR n 2 23 PHE n 2 24 THR n 2 25 ASN n 2 26 TYR n 2 27 TYR n 2 28 ILE n 2 29 SER n 2 30 TRP n 2 31 ILE n 2 32 LYS n 2 33 GLN n 2 34 THR n 2 35 THR n 2 36 GLY n 2 37 GLN n 2 38 GLY n 2 39 LEU n 2 40 GLU n 2 41 TYR n 2 42 VAL n 2 43 GLY n 2 44 TYR n 2 45 ILE n 2 46 SER n 2 47 THR n 2 48 GLY n 2 49 SER n 2 50 GLY n 2 51 GLY n 2 52 THR n 2 53 ASN n 2 54 TYR n 2 55 ASN n 2 56 GLU n 2 57 LYS n 2 58 PHE n 2 59 LYS n 2 60 GLY n 2 61 LYS n 2 62 ALA n 2 63 THR n 2 64 LEU n 2 65 THR n 2 66 VAL n 2 67 ASP n 2 68 LYS n 2 69 SER n 2 70 SER n 2 71 SER n 2 72 THR n 2 73 THR n 2 74 PHE n 2 75 MET n 2 76 GLN n 2 77 LEU n 2 78 SER n 2 79 SER n 2 80 LEU n 2 81 THR n 2 82 PRO n 2 83 ASP n 2 84 ASP n 2 85 SER n 2 86 ALA n 2 87 VAL n 2 88 TYR n 2 89 TYR n 2 90 CYS n 2 91 ALA n 2 92 ARG n 2 93 GLY n 2 94 ASP n 2 95 TRP n 2 96 ASN n 2 97 PHE n 2 98 ASP n 2 99 PHE n 2 100 TRP n 2 101 GLY n 2 102 PRO n 2 103 GLY n 2 104 THR n 2 105 MET n 2 106 VAL n 2 107 THR n 2 108 VAL n 2 109 SER n # loop_ _entity_src_nat.entity_id _entity_src_nat.pdbx_src_id _entity_src_nat.pdbx_alt_source_flag _entity_src_nat.pdbx_beg_seq_num _entity_src_nat.pdbx_end_seq_num _entity_src_nat.common_name _entity_src_nat.pdbx_organism_scientific _entity_src_nat.pdbx_ncbi_taxonomy_id _entity_src_nat.genus _entity_src_nat.species _entity_src_nat.strain _entity_src_nat.tissue _entity_src_nat.tissue_fraction _entity_src_nat.pdbx_secretion _entity_src_nat.pdbx_fragment _entity_src_nat.pdbx_variant _entity_src_nat.pdbx_cell_line _entity_src_nat.pdbx_atcc _entity_src_nat.pdbx_cellular_location _entity_src_nat.pdbx_organ _entity_src_nat.pdbx_organelle _entity_src_nat.pdbx_cell _entity_src_nat.pdbx_plasmid_name _entity_src_nat.pdbx_plasmid_details _entity_src_nat.details 1 1 sample ? ? ? 'Rattus norvegicus' 10116 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 2 1 sample ? ? ? 'Rattus norvegicus' 10116 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_align_begin _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_db_isoform 1 PDB 3IY1 3IY1 1 1 ;LMTQIPPSLSASLGDKVTITCQASQNINKYIAWYQQKPGKVPGLLIHYTSTLVSGIPSRFSGSGSGRDYSFSISNVESED IASYYCLQYDSSPRTFGGGTKLELKRA ; ? 2 PDB 3IY1 3IY1 2 1 ;SGAELAKPGSSVKISCKASGYTFTNYYISWIKQTTGQGLEYVGYISTGSGGTNYNEKFKGKATLTVDKSSSTTFMQLSSL TPDDSAVYYCARGDWNFDFWGPGTMVTVS ; ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3IY1 A 1 ? 107 ? 3IY1 1 ? 107 ? 1 107 2 2 3IY1 B 1 ? 109 ? 3IY1 108 ? 216 ? 108 216 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3IY1 _exptl.method 'ELECTRON MICROSCOPY' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews ? _exptl_crystal.density_percent_sol ? _exptl_crystal.description ? # _diffrn.id 1 _diffrn.ambient_temp ? _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type ? # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _refine_hist.pdbx_refine_id 'ELECTRON MICROSCOPY' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1648 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 0 _refine_hist.number_atoms_total 1648 _refine_hist.d_res_high . _refine_hist.d_res_low . # _struct.entry_id 3IY1 _struct.title 'Variable domains of the WAM of Fab B fitted into the cryoEM reconstruction of the virus-Fab B complex' _struct.pdbx_descriptor 'Fab B' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3IY1 _struct_keywords.pdbx_keywords 'IMMUNE SYSTEM' _struct_keywords.text 'cryoEM, neutralizing antibody, parvovirus, canine, feline, fab footprint, IMMUNE SYSTEM' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLU A 77 ? ILE A 81 ? GLU A 77 ILE A 81 5 ? 5 HELX_P HELX_P2 2 THR B 22 ? TYR B 26 ? THR B 129 TYR B 133 5 ? 5 HELX_P HELX_P3 3 GLU B 56 ? LYS B 59 ? GLU B 163 LYS B 166 5 ? 4 HELX_P HELX_P4 4 THR B 81 ? SER B 85 ? THR B 188 SER B 192 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf1 disulf ? ? A CYS 21 SG ? ? ? 1_555 A CYS 86 SG ? ? A CYS 21 A CYS 86 1_555 ? ? ? ? ? ? ? 2.578 ? disulf2 disulf ? ? B CYS 16 SG ? ? ? 1_555 B CYS 90 SG ? ? B CYS 123 B CYS 197 1_555 ? ? ? ? ? ? ? 2.577 ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 ILE 5 A . ? ILE 5 A PRO 6 A ? PRO 6 A 1 3.99 2 SER 92 A . ? SER 92 A PRO 93 A ? PRO 93 A 1 11.02 3 PHE 99 B . ? PHE 206 B TRP 100 B ? TRP 207 B 1 21.92 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 4 ? B ? 6 ? C ? 4 ? D ? 6 ? E ? 4 ? F ? 3 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel B 1 2 ? parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel B 5 6 ? anti-parallel C 1 2 ? parallel C 2 3 ? anti-parallel C 3 4 ? anti-parallel D 1 2 ? parallel D 2 3 ? anti-parallel D 3 4 ? anti-parallel D 4 5 ? anti-parallel D 5 6 ? anti-parallel E 1 2 ? parallel E 2 3 ? anti-parallel E 3 4 ? anti-parallel F 1 2 ? anti-parallel F 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 MET A 2 ? ILE A 5 ? MET A 2 ILE A 5 A 2 VAL A 17 ? ALA A 23 ? VAL A 17 ALA A 23 A 3 ASP A 68 ? ILE A 73 ? ASP A 68 ILE A 73 A 4 PHE A 60 ? SER A 65 ? PHE A 60 SER A 65 B 1 SER A 8 ? SER A 12 ? SER A 8 SER A 12 B 2 THR A 100 ? LYS A 105 ? THR A 100 LYS A 105 B 3 ALA A 82 ? GLN A 88 ? ALA A 82 GLN A 88 B 4 ILE A 31 ? GLN A 36 ? ILE A 31 GLN A 36 B 5 GLY A 43 ? HIS A 47 ? GLY A 43 HIS A 47 B 6 THR A 51 ? LEU A 52 ? THR A 51 LEU A 52 C 1 SER A 8 ? SER A 12 ? SER A 8 SER A 12 C 2 THR A 100 ? LYS A 105 ? THR A 100 LYS A 105 C 3 ALA A 82 ? GLN A 88 ? ALA A 82 GLN A 88 C 4 THR A 95 ? PHE A 96 ? THR A 95 PHE A 96 D 1 GLU B 4 ? ALA B 6 ? GLU B 111 ALA B 113 D 2 MET B 105 ? VAL B 108 ? MET B 212 VAL B 215 D 3 ALA B 86 ? GLY B 93 ? ALA B 193 GLY B 200 D 4 TYR B 27 ? GLN B 33 ? TYR B 134 GLN B 140 D 5 LEU B 39 ? ILE B 45 ? LEU B 146 ILE B 152 D 6 THR B 52 ? TYR B 54 ? THR B 159 TYR B 161 E 1 GLU B 4 ? ALA B 6 ? GLU B 111 ALA B 113 E 2 MET B 105 ? VAL B 108 ? MET B 212 VAL B 215 E 3 ALA B 86 ? GLY B 93 ? ALA B 193 GLY B 200 E 4 PHE B 97 ? TRP B 100 ? PHE B 204 TRP B 207 F 1 VAL B 12 ? LYS B 17 ? VAL B 119 LYS B 124 F 2 THR B 72 ? LEU B 77 ? THR B 179 LEU B 184 F 3 ALA B 62 ? ASP B 67 ? ALA B 169 ASP B 174 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N ILE A 5 ? N ILE A 5 O THR A 20 ? O THR A 20 A 2 3 N ILE A 19 ? N ILE A 19 O PHE A 71 ? O PHE A 71 A 3 4 O SER A 70 ? O SER A 70 N SER A 63 ? N SER A 63 B 1 2 N ALA A 11 ? N ALA A 11 O LYS A 105 ? O LYS A 105 B 2 3 O LEU A 102 ? O LEU A 102 N ALA A 82 ? N ALA A 82 B 3 4 O TYR A 85 ? O TYR A 85 N TYR A 34 ? N TYR A 34 B 4 5 N TRP A 33 ? N TRP A 33 O ILE A 46 ? O ILE A 46 B 5 6 N HIS A 47 ? N HIS A 47 O THR A 51 ? O THR A 51 C 1 2 N ALA A 11 ? N ALA A 11 O LYS A 105 ? O LYS A 105 C 2 3 O LEU A 102 ? O LEU A 102 N ALA A 82 ? N ALA A 82 C 3 4 N GLN A 88 ? N GLN A 88 O THR A 95 ? O THR A 95 D 1 2 N GLU B 4 ? N GLU B 111 O THR B 107 ? O THR B 214 D 2 3 O VAL B 106 ? O VAL B 213 N ALA B 86 ? N ALA B 193 D 3 4 O VAL B 87 ? O VAL B 194 N GLN B 33 ? N GLN B 140 D 4 5 N LYS B 32 ? N LYS B 139 O GLU B 40 ? O GLU B 147 D 5 6 N TYR B 44 ? N TYR B 151 O ASN B 53 ? O ASN B 160 E 1 2 N GLU B 4 ? N GLU B 111 O THR B 107 ? O THR B 214 E 2 3 O VAL B 106 ? O VAL B 213 N ALA B 86 ? N ALA B 193 E 3 4 N ARG B 92 ? N ARG B 199 O ASP B 98 ? O ASP B 205 F 1 2 N ILE B 14 ? N ILE B 121 O MET B 75 ? O MET B 182 F 2 3 O PHE B 74 ? O PHE B 181 N THR B 65 ? N THR B 172 # _database_PDB_matrix.entry_id 3IY1 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3IY1 _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _database_PDB_caveat.text 'Chirality error at CB center of ILE 81 in Chain B' # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 LEU 1 1 1 LEU LEU A . n A 1 2 MET 2 2 2 MET MET A . n A 1 3 THR 3 3 3 THR THR A . n A 1 4 GLN 4 4 4 GLN GLN A . n A 1 5 ILE 5 5 5 ILE ILE A . n A 1 6 PRO 6 6 6 PRO PRO A . n A 1 7 PRO 7 7 7 PRO PRO A . n A 1 8 SER 8 8 8 SER SER A . n A 1 9 LEU 9 9 9 LEU LEU A . n A 1 10 SER 10 10 10 SER SER A . n A 1 11 ALA 11 11 11 ALA ALA A . n A 1 12 SER 12 12 12 SER SER A . n A 1 13 LEU 13 13 13 LEU LEU A . n A 1 14 GLY 14 14 14 GLY GLY A . n A 1 15 ASP 15 15 15 ASP ASP A . n A 1 16 LYS 16 16 16 LYS LYS A . n A 1 17 VAL 17 17 17 VAL VAL A . n A 1 18 THR 18 18 18 THR THR A . n A 1 19 ILE 19 19 19 ILE ILE A . n A 1 20 THR 20 20 20 THR THR A . n A 1 21 CYS 21 21 21 CYS CYS A . n A 1 22 GLN 22 22 22 GLN GLN A . n A 1 23 ALA 23 23 23 ALA ALA A . n A 1 24 SER 24 24 24 SER SER A . n A 1 25 GLN 25 25 25 GLN GLN A . n A 1 26 ASN 26 26 26 ASN ASN A . n A 1 27 ILE 27 27 27 ILE ILE A . n A 1 28 ASN 28 28 28 ASN ASN A . n A 1 29 LYS 29 29 29 LYS LYS A . n A 1 30 TYR 30 30 30 TYR TYR A . n A 1 31 ILE 31 31 31 ILE ILE A . n A 1 32 ALA 32 32 32 ALA ALA A . n A 1 33 TRP 33 33 33 TRP TRP A . n A 1 34 TYR 34 34 34 TYR TYR A . n A 1 35 GLN 35 35 35 GLN GLN A . n A 1 36 GLN 36 36 36 GLN GLN A . n A 1 37 LYS 37 37 37 LYS LYS A . n A 1 38 PRO 38 38 38 PRO PRO A . n A 1 39 GLY 39 39 39 GLY GLY A . n A 1 40 LYS 40 40 40 LYS LYS A . n A 1 41 VAL 41 41 41 VAL VAL A . n A 1 42 PRO 42 42 42 PRO PRO A . n A 1 43 GLY 43 43 43 GLY GLY A . n A 1 44 LEU 44 44 44 LEU LEU A . n A 1 45 LEU 45 45 45 LEU LEU A . n A 1 46 ILE 46 46 46 ILE ILE A . n A 1 47 HIS 47 47 47 HIS HIS A . n A 1 48 TYR 48 48 48 TYR TYR A . n A 1 49 THR 49 49 49 THR THR A . n A 1 50 SER 50 50 50 SER SER A . n A 1 51 THR 51 51 51 THR THR A . n A 1 52 LEU 52 52 52 LEU LEU A . n A 1 53 VAL 53 53 53 VAL VAL A . n A 1 54 SER 54 54 54 SER SER A . n A 1 55 GLY 55 55 55 GLY GLY A . n A 1 56 ILE 56 56 56 ILE ILE A . n A 1 57 PRO 57 57 57 PRO PRO A . n A 1 58 SER 58 58 58 SER SER A . n A 1 59 ARG 59 59 59 ARG ARG A . n A 1 60 PHE 60 60 60 PHE PHE A . n A 1 61 SER 61 61 61 SER SER A . n A 1 62 GLY 62 62 62 GLY GLY A . n A 1 63 SER 63 63 63 SER SER A . n A 1 64 GLY 64 64 64 GLY GLY A . n A 1 65 SER 65 65 65 SER SER A . n A 1 66 GLY 66 66 66 GLY GLY A . n A 1 67 ARG 67 67 67 ARG ARG A . n A 1 68 ASP 68 68 68 ASP ASP A . n A 1 69 TYR 69 69 69 TYR TYR A . n A 1 70 SER 70 70 70 SER SER A . n A 1 71 PHE 71 71 71 PHE PHE A . n A 1 72 SER 72 72 72 SER SER A . n A 1 73 ILE 73 73 73 ILE ILE A . n A 1 74 SER 74 74 74 SER SER A . n A 1 75 ASN 75 75 75 ASN ASN A . n A 1 76 VAL 76 76 76 VAL VAL A . n A 1 77 GLU 77 77 77 GLU GLU A . n A 1 78 SER 78 78 78 SER SER A . n A 1 79 GLU 79 79 79 GLU GLU A . n A 1 80 ASP 80 80 80 ASP ASP A . n A 1 81 ILE 81 81 81 ILE ILE A . n A 1 82 ALA 82 82 82 ALA ALA A . n A 1 83 SER 83 83 83 SER SER A . n A 1 84 TYR 84 84 84 TYR TYR A . n A 1 85 TYR 85 85 85 TYR TYR A . n A 1 86 CYS 86 86 86 CYS CYS A . n A 1 87 LEU 87 87 87 LEU LEU A . n A 1 88 GLN 88 88 88 GLN GLN A . n A 1 89 TYR 89 89 89 TYR TYR A . n A 1 90 ASP 90 90 90 ASP ASP A . n A 1 91 SER 91 91 91 SER SER A . n A 1 92 SER 92 92 92 SER SER A . n A 1 93 PRO 93 93 93 PRO PRO A . n A 1 94 ARG 94 94 94 ARG ARG A . n A 1 95 THR 95 95 95 THR THR A . n A 1 96 PHE 96 96 96 PHE PHE A . n A 1 97 GLY 97 97 97 GLY GLY A . n A 1 98 GLY 98 98 98 GLY GLY A . n A 1 99 GLY 99 99 99 GLY GLY A . n A 1 100 THR 100 100 100 THR THR A . n A 1 101 LYS 101 101 101 LYS LYS A . n A 1 102 LEU 102 102 102 LEU LEU A . n A 1 103 GLU 103 103 103 GLU GLU A . n A 1 104 LEU 104 104 104 LEU LEU A . n A 1 105 LYS 105 105 105 LYS LYS A . n A 1 106 ARG 106 106 106 ARG ARG A . n A 1 107 ALA 107 107 107 ALA ALA A . n B 2 1 SER 1 108 108 SER SER B . n B 2 2 GLY 2 109 109 GLY GLY B . n B 2 3 ALA 3 110 110 ALA ALA B . n B 2 4 GLU 4 111 111 GLU GLU B . n B 2 5 LEU 5 112 112 LEU LEU B . n B 2 6 ALA 6 113 113 ALA ALA B . n B 2 7 LYS 7 114 114 LYS LYS B . n B 2 8 PRO 8 115 115 PRO PRO B . n B 2 9 GLY 9 116 116 GLY GLY B . n B 2 10 SER 10 117 117 SER SER B . n B 2 11 SER 11 118 118 SER SER B . n B 2 12 VAL 12 119 119 VAL VAL B . n B 2 13 LYS 13 120 120 LYS LYS B . n B 2 14 ILE 14 121 121 ILE ILE B . n B 2 15 SER 15 122 122 SER SER B . n B 2 16 CYS 16 123 123 CYS CYS B . n B 2 17 LYS 17 124 124 LYS LYS B . n B 2 18 ALA 18 125 125 ALA ALA B . n B 2 19 SER 19 126 126 SER SER B . n B 2 20 GLY 20 127 127 GLY GLY B . n B 2 21 TYR 21 128 128 TYR TYR B . n B 2 22 THR 22 129 129 THR THR B . n B 2 23 PHE 23 130 130 PHE PHE B . n B 2 24 THR 24 131 131 THR THR B . n B 2 25 ASN 25 132 132 ASN ASN B . n B 2 26 TYR 26 133 133 TYR TYR B . n B 2 27 TYR 27 134 134 TYR TYR B . n B 2 28 ILE 28 135 135 ILE ILE B . n B 2 29 SER 29 136 136 SER SER B . n B 2 30 TRP 30 137 137 TRP TRP B . n B 2 31 ILE 31 138 138 ILE ILE B . n B 2 32 LYS 32 139 139 LYS LYS B . n B 2 33 GLN 33 140 140 GLN GLN B . n B 2 34 THR 34 141 141 THR THR B . n B 2 35 THR 35 142 142 THR THR B . n B 2 36 GLY 36 143 143 GLY GLY B . n B 2 37 GLN 37 144 144 GLN GLN B . n B 2 38 GLY 38 145 145 GLY GLY B . n B 2 39 LEU 39 146 146 LEU LEU B . n B 2 40 GLU 40 147 147 GLU GLU B . n B 2 41 TYR 41 148 148 TYR TYR B . n B 2 42 VAL 42 149 149 VAL VAL B . n B 2 43 GLY 43 150 150 GLY GLY B . n B 2 44 TYR 44 151 151 TYR TYR B . n B 2 45 ILE 45 152 152 ILE ILE B . n B 2 46 SER 46 153 153 SER SER B . n B 2 47 THR 47 154 154 THR THR B . n B 2 48 GLY 48 155 155 GLY GLY B . n B 2 49 SER 49 156 156 SER SER B . n B 2 50 GLY 50 157 157 GLY GLY B . n B 2 51 GLY 51 158 158 GLY GLY B . n B 2 52 THR 52 159 159 THR THR B . n B 2 53 ASN 53 160 160 ASN ASN B . n B 2 54 TYR 54 161 161 TYR TYR B . n B 2 55 ASN 55 162 162 ASN ASN B . n B 2 56 GLU 56 163 163 GLU GLU B . n B 2 57 LYS 57 164 164 LYS LYS B . n B 2 58 PHE 58 165 165 PHE PHE B . n B 2 59 LYS 59 166 166 LYS LYS B . n B 2 60 GLY 60 167 167 GLY GLY B . n B 2 61 LYS 61 168 168 LYS LYS B . n B 2 62 ALA 62 169 169 ALA ALA B . n B 2 63 THR 63 170 170 THR THR B . n B 2 64 LEU 64 171 171 LEU LEU B . n B 2 65 THR 65 172 172 THR THR B . n B 2 66 VAL 66 173 173 VAL VAL B . n B 2 67 ASP 67 174 174 ASP ASP B . n B 2 68 LYS 68 175 175 LYS LYS B . n B 2 69 SER 69 176 176 SER SER B . n B 2 70 SER 70 177 177 SER SER B . n B 2 71 SER 71 178 178 SER SER B . n B 2 72 THR 72 179 179 THR THR B . n B 2 73 THR 73 180 180 THR THR B . n B 2 74 PHE 74 181 181 PHE PHE B . n B 2 75 MET 75 182 182 MET MET B . n B 2 76 GLN 76 183 183 GLN GLN B . n B 2 77 LEU 77 184 184 LEU LEU B . n B 2 78 SER 78 185 185 SER SER B . n B 2 79 SER 79 186 186 SER SER B . n B 2 80 LEU 80 187 187 LEU LEU B . n B 2 81 THR 81 188 188 THR THR B . n B 2 82 PRO 82 189 189 PRO PRO B . n B 2 83 ASP 83 190 190 ASP ASP B . n B 2 84 ASP 84 191 191 ASP ASP B . n B 2 85 SER 85 192 192 SER SER B . n B 2 86 ALA 86 193 193 ALA ALA B . n B 2 87 VAL 87 194 194 VAL VAL B . n B 2 88 TYR 88 195 195 TYR TYR B . n B 2 89 TYR 89 196 196 TYR TYR B . n B 2 90 CYS 90 197 197 CYS CYS B . n B 2 91 ALA 91 198 198 ALA ALA B . n B 2 92 ARG 92 199 199 ARG ARG B . n B 2 93 GLY 93 200 200 GLY GLY B . n B 2 94 ASP 94 201 201 ASP ASP B . n B 2 95 TRP 95 202 202 TRP TRP B . n B 2 96 ASN 96 203 203 ASN ASN B . n B 2 97 PHE 97 204 204 PHE PHE B . n B 2 98 ASP 98 205 205 ASP ASP B . n B 2 99 PHE 99 206 206 PHE PHE B . n B 2 100 TRP 100 207 207 TRP TRP B . n B 2 101 GLY 101 208 208 GLY GLY B . n B 2 102 PRO 102 209 209 PRO PRO B . n B 2 103 GLY 103 210 210 GLY GLY B . n B 2 104 THR 104 211 211 THR THR B . n B 2 105 MET 105 212 212 MET MET B . n B 2 106 VAL 106 213 213 VAL VAL B . n B 2 107 THR 107 214 214 THR THR B . n B 2 108 VAL 108 215 215 VAL VAL B . n B 2 109 SER 109 216 216 SER SER B . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2009-05-12 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2018-07-18 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Data collection' # _pdbx_audit_revision_category.ordinal 1 _pdbx_audit_revision_category.revision_ordinal 3 _pdbx_audit_revision_category.data_content_type 'Structure model' _pdbx_audit_revision_category.category em_software # _pdbx_audit_revision_item.ordinal 1 _pdbx_audit_revision_item.revision_ordinal 3 _pdbx_audit_revision_item.data_content_type 'Structure model' _pdbx_audit_revision_item.item '_em_software.image_processing_id' # _em_3d_reconstruction.entry_id 3IY1 _em_3d_reconstruction.id 1 _em_3d_reconstruction.resolution_method 'FSC 0.5 CUT-OFF' _em_3d_reconstruction.symmetry_type POINT _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.method 'common lines' _em_3d_reconstruction.resolution 18 _em_3d_reconstruction.num_particles 1126 _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.magnification_calibration ? _em_3d_reconstruction.details ? _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.algorithm ? # _em_buffer.id 1 _em_buffer.specimen_id 1 _em_buffer.name ? _em_buffer.pH 7.5 _em_buffer.details '10mM Tris' # loop_ _em_entity_assembly.id _em_entity_assembly.name _em_entity_assembly.type _em_entity_assembly.parent_id _em_entity_assembly.synonym _em_entity_assembly.details _em_entity_assembly.oligomeric_details 1 'Fab fragment from MAb B interacting with feline panleukopenia virus (FPV)' COMPLEX 0 ? ? ? 2 'feline panleukopenia virus' VIRUS 1 FPV ? ? # _em_image_scans.entry_id 3IY1 _em_image_scans.id 1 _em_image_scans.image_recording_id 1 _em_image_scans.number_digital_images 56 _em_image_scans.scanner_model 'ZEISS SCAI' _em_image_scans.sampling_size 7 _em_image_scans.od_range 0.9 _em_image_scans.quant_bit_size ? _em_image_scans.details 'scanned at 7 microns and bin averaged to 14' _em_image_scans.citation_id ? # _em_imaging.entry_id 3IY1 _em_imaging.id 1 _em_imaging.microscope_model 'FEI/PHILIPS CM300FEG/T' _em_imaging.electron_source 'TUNGSTEN HAIRPIN' _em_imaging.specimen_id 1 _em_imaging.specimen_holder_type 'side mounted nitrogen cooled' _em_imaging.specimen_holder_model 'GATAN LIQUID NITROGEN' _em_imaging.accelerating_voltage 300 _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.mode 'BRIGHT FIELD' _em_imaging.nominal_defocus_min 1.7 _em_imaging.nominal_defocus_max 3.7 _em_imaging.tilt_angle_min 0.0 _em_imaging.tilt_angle_max 0.0 _em_imaging.nominal_magnification 45000 _em_imaging.calibrated_magnification 47190 _em_imaging.temperature 93 _em_imaging.recording_temperature_minimum 83 _em_imaging.recording_temperature_maximum 83 _em_imaging.detector_distance 0.0 _em_imaging.date 2004-06-30 _em_imaging.electron_beam_tilt_params ? _em_imaging.astigmatism ? _em_imaging.details ? _em_imaging.nominal_cs ? _em_imaging.citation_id ? # _em_virus_entity.id 1 _em_virus_entity.virus_host_category VERTEBRATES _em_virus_entity.entity_assembly_id 1 _em_virus_entity.virus_type VIRION _em_virus_entity.virus_isolate STRAIN _em_virus_entity.empty NO _em_virus_entity.enveloped NO _em_virus_entity.details ? # _em_vitrification.entry_id 3IY1 _em_vitrification.id 1 _em_vitrification.instrument 'HOMEMADE PLUNGER' _em_vitrification.cryogen_name ETHANE _em_vitrification.humidity ? _em_vitrification.temp 120 _em_vitrification.method 'blot before plunging' _em_vitrification.time_resolved_state ? _em_vitrification.details ? _em_vitrification.citation_id ? _em_vitrification.specimen_id 1 # _em_experiment.reconstruction_method 'SINGLE PARTICLE' _em_experiment.entry_id 3IY1 _em_experiment.id 1 _em_experiment.aggregation_state PARTICLE _em_experiment.entity_assembly_id 1 # _em_single_particle_entity.entry_id 3IY1 _em_single_particle_entity.id 1 _em_single_particle_entity.point_symmetry I _em_single_particle_entity.image_processing_id 1 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 NE1 B TRP 207 ? ? CE2 B TRP 207 ? ? 1.497 1.371 0.126 0.013 N 2 1 CE2 B TRP 207 ? ? CD2 B TRP 207 ? ? 1.181 1.409 -0.228 0.012 N 3 1 CZ3 B TRP 207 ? ? CH2 B TRP 207 ? ? 1.299 1.396 -0.097 0.016 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 CA A VAL 17 ? ? CB A VAL 17 ? ? CG2 A VAL 17 ? ? 96.89 110.90 -14.01 1.50 N 2 1 CB A PHE 60 ? ? CG A PHE 60 ? ? CD2 A PHE 60 ? ? 127.21 120.80 6.41 0.70 N 3 1 CG A PHE 60 ? ? CD1 A PHE 60 ? ? CE1 A PHE 60 ? ? 130.73 120.80 9.93 1.10 N 4 1 CB A ILE 81 ? ? CA A ILE 81 ? ? C A ILE 81 ? ? 96.50 111.60 -15.10 2.00 N 5 1 CA A ILE 81 ? ? CB A ILE 81 ? ? CG1 A ILE 81 ? ? 122.69 111.00 11.69 1.90 N 6 1 CA A ILE 81 ? ? CB A ILE 81 ? ? CG2 A ILE 81 ? ? 124.98 110.90 14.08 2.00 N 7 1 N A PRO 93 ? ? CA A PRO 93 ? ? CB A PRO 93 ? ? 91.32 102.60 -11.28 1.10 N 8 1 N A LEU 104 ? ? CA A LEU 104 ? ? CB A LEU 104 ? ? 95.28 110.40 -15.12 2.00 N 9 1 CA A LEU 104 ? ? CB A LEU 104 ? ? CG A LEU 104 ? ? 99.54 115.30 -15.76 2.30 N 10 1 CB B ILE 121 ? ? CA B ILE 121 ? ? C B ILE 121 ? ? 131.75 111.60 20.15 2.00 N 11 1 CA B ILE 121 ? ? CB B ILE 121 ? ? CG2 B ILE 121 ? ? 136.95 110.90 26.05 2.00 N 12 1 CB B CYS 123 ? ? CA B CYS 123 ? ? C B CYS 123 ? ? 120.19 111.50 8.69 1.20 N 13 1 CG B GLU 147 ? ? CD B GLU 147 ? ? OE1 B GLU 147 ? ? 98.09 118.30 -20.21 2.00 N 14 1 CG B GLU 147 ? ? CD B GLU 147 ? ? OE2 B GLU 147 ? ? 133.93 118.30 15.63 2.00 N 15 1 CB B TYR 151 ? ? CA B TYR 151 ? ? C B TYR 151 ? ? 92.82 110.40 -17.58 2.00 N 16 1 CB B THR 154 ? ? CA B THR 154 ? ? C B THR 154 ? ? 136.74 111.60 25.14 2.70 N 17 1 N B THR 154 ? ? CA B THR 154 ? ? CB B THR 154 ? ? 96.37 110.30 -13.93 1.90 N 18 1 CA B THR 154 ? ? CB B THR 154 ? ? CG2 B THR 154 ? ? 137.06 112.40 24.66 1.40 N 19 1 CB B PHE 165 ? ? CG B PHE 165 ? ? CD2 B PHE 165 ? ? 115.02 120.80 -5.78 0.70 N 20 1 CD1 B PHE 165 ? ? CG B PHE 165 ? ? CD2 B PHE 165 ? ? 127.12 118.30 8.82 1.30 N 21 1 CB B PHE 165 ? ? CG B PHE 165 ? ? CD1 B PHE 165 ? ? 115.99 120.80 -4.81 0.70 N 22 1 CG B PHE 165 ? ? CD1 B PHE 165 ? ? CE1 B PHE 165 ? ? 113.25 120.80 -7.55 1.10 N 23 1 CG B PHE 165 ? ? CD2 B PHE 165 ? ? CE2 B PHE 165 ? ? 110.59 120.80 -10.21 1.10 N 24 1 CD1 B PHE 165 ? ? CE1 B PHE 165 ? ? CZ B PHE 165 ? ? 84.10 120.10 -36.00 1.20 N 25 1 CE1 B PHE 165 ? ? CZ B PHE 165 ? ? CE2 B PHE 165 ? ? 131.08 120.00 11.08 1.80 N 26 1 CZ B PHE 165 ? ? CE2 B PHE 165 ? ? CD2 B PHE 165 ? ? 90.58 120.10 -29.52 1.20 N 27 1 CB B LEU 171 ? ? CA B LEU 171 ? ? C B LEU 171 ? ? 97.58 110.20 -12.62 1.90 N 28 1 N B LEU 171 ? ? CA B LEU 171 ? ? CB B LEU 171 ? ? 90.44 110.40 -19.96 2.00 N 29 1 CB B LEU 171 ? ? CG B LEU 171 ? ? CD2 B LEU 171 ? ? 95.95 111.00 -15.05 1.70 N 30 1 CA B THR 179 ? ? CB B THR 179 ? ? CG2 B THR 179 ? ? 102.82 112.40 -9.58 1.40 N 31 1 CA B THR 188 ? ? CB B THR 188 ? ? CG2 B THR 188 ? ? 122.25 112.40 9.85 1.40 N 32 1 O B CYS 197 ? ? C B CYS 197 ? ? N B ALA 198 ? ? 110.84 122.70 -11.86 1.60 Y 33 1 N B ARG 199 ? ? CA B ARG 199 ? ? C B ARG 199 ? ? 94.75 111.00 -16.25 2.70 N 34 1 CB B PHE 206 ? ? CA B PHE 206 ? ? C B PHE 206 ? ? 131.58 110.40 21.18 2.00 N 35 1 N B PHE 206 ? ? CA B PHE 206 ? ? CB B PHE 206 ? ? 99.01 110.60 -11.59 1.80 N 36 1 CA B PHE 206 ? ? C B PHE 206 ? ? N B TRP 207 ? ? 130.49 117.20 13.29 2.20 Y 37 1 CB B TRP 207 ? ? CG B TRP 207 ? ? CD2 B TRP 207 ? ? 136.30 126.60 9.70 1.30 N 38 1 CD1 B TRP 207 ? ? CG B TRP 207 ? ? CD2 B TRP 207 ? ? 99.35 106.30 -6.95 0.80 N 39 1 CG B TRP 207 ? ? CD1 B TRP 207 ? ? NE1 B TRP 207 ? ? 116.81 110.10 6.71 1.00 N 40 1 CD1 B TRP 207 ? ? NE1 B TRP 207 ? ? CE2 B TRP 207 ? ? 96.36 109.00 -12.64 0.90 N 41 1 NE1 B TRP 207 ? ? CE2 B TRP 207 ? ? CZ2 B TRP 207 ? ? 108.54 130.40 -21.86 1.10 N 42 1 CD2 B TRP 207 ? ? CE2 B TRP 207 ? ? CZ2 B TRP 207 ? ? 143.19 122.30 20.89 1.20 N 43 1 CE2 B TRP 207 ? ? CD2 B TRP 207 ? ? CG B TRP 207 ? ? 119.17 107.30 11.87 0.80 N 44 1 CG B TRP 207 ? ? CD2 B TRP 207 ? ? CE3 B TRP 207 ? ? 126.64 133.90 -7.26 0.90 N 45 1 CE3 B TRP 207 ? ? CZ3 B TRP 207 ? ? CH2 B TRP 207 ? ? 128.28 121.20 7.08 1.10 N 46 1 CH2 B TRP 207 ? ? CZ2 B TRP 207 ? ? CE2 B TRP 207 ? ? 103.72 117.40 -13.68 1.00 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LEU A 45 ? ? -121.86 -59.92 2 1 THR A 49 ? ? 75.26 -51.65 3 1 SER A 50 ? ? -141.68 -7.08 4 1 ALA A 82 ? ? 148.07 -160.99 5 1 ALA B 110 ? ? -82.95 -157.59 6 1 GLU B 111 ? ? 120.03 -168.05 7 1 CYS B 123 ? ? -162.49 112.73 8 1 ALA B 193 ? ? 169.87 172.47 9 1 ALA B 198 ? ? 170.90 143.32 10 1 ASP B 201 ? ? -108.86 -79.31 11 1 TRP B 207 ? ? 168.03 5.41 12 1 THR B 211 ? ? 163.30 102.78 # loop_ _pdbx_validate_main_chain_plane.id _pdbx_validate_main_chain_plane.PDB_model_num _pdbx_validate_main_chain_plane.auth_comp_id _pdbx_validate_main_chain_plane.auth_asym_id _pdbx_validate_main_chain_plane.auth_seq_id _pdbx_validate_main_chain_plane.PDB_ins_code _pdbx_validate_main_chain_plane.label_alt_id _pdbx_validate_main_chain_plane.improper_torsion_angle 1 1 CYS B 197 ? ? -13.30 2 1 ALA B 198 ? ? 13.87 # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 TYR B 133 ? ? 0.104 'SIDE CHAIN' 2 1 PHE B 165 ? ? 0.172 'SIDE CHAIN' # _pdbx_validate_chiral.id 1 _pdbx_validate_chiral.PDB_model_num 1 _pdbx_validate_chiral.auth_atom_id CB _pdbx_validate_chiral.label_alt_id ? _pdbx_validate_chiral.auth_asym_id A _pdbx_validate_chiral.auth_comp_id ILE _pdbx_validate_chiral.auth_seq_id 81 _pdbx_validate_chiral.PDB_ins_code ? _pdbx_validate_chiral.details 'WRONG HAND' _pdbx_validate_chiral.omega . # _em_ctf_correction.id 1 _em_ctf_correction.details robem _em_ctf_correction.type . # _em_image_processing.id 1 _em_image_processing.image_recording_id 1 _em_image_processing.details ? # _em_image_recording.avg_electron_dose_per_image 28.4 _em_image_recording.details ? _em_image_recording.id 1 _em_image_recording.film_or_detector_model 'KODAK SO-163 FILM' _em_image_recording.imaging_id 1 _em_image_recording.detector_mode ? _em_image_recording.average_exposure_time ? _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged ? _em_image_recording.num_real_images ? # loop_ _em_software.id _em_software.name _em_software.version _em_software.category _em_software.details _em_software.image_processing_id 1 EM3DR ? RECONSTRUCTION ? 1 2 EMPFT ? RECONSTRUCTION ? 1 # _em_specimen.experiment_id 1 _em_specimen.id 1 _em_specimen.concentration 1 _em_specimen.vitrification_applied YES _em_specimen.staining_applied NO _em_specimen.embedding_applied NO _em_specimen.shadowing_applied NO _em_specimen.details '10mM Tris' # _em_virus_natural_host.entity_assembly_id 1 _em_virus_natural_host.id 1 _em_virus_natural_host.ncbi_tax_id 9685 _em_virus_natural_host.organism 'Felis catus' _em_virus_natural_host.strain ? # _em_virus_shell.entity_assembly_id 1 _em_virus_shell.id 1 _em_virus_shell.name ? _em_virus_shell.diameter ? _em_virus_shell.triangulation 1 #