data_3IY2 # _entry.id 3IY2 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.296 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 3IY2 RCSB RCSB160008 WWPDB D_1000160008 # _pdbx_database_related.db_name EMDB _pdbx_database_related.db_id EMD-5107 _pdbx_database_related.content_type 'associated EM volume' _pdbx_database_related.details ;the cryoEM reconstruction of the virus-Fab 6 complex ; # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3IY2 _pdbx_database_status.recvd_initial_deposition_date 2009-04-09 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Hafenstein, S.' 1 'Bowman, V.D.' 2 'Sun, T.' 3 'Nelson, C.D.' 4 'Palermo, L.M.' 5 'Chipman, P.R.' 6 'Battisti, A.J.' 7 'Parrish, C.R.' 8 'Rossmann, M.G.' 9 # _citation.id primary _citation.title 'Structural comparison of different antibodies interacting with parvovirus capsids' _citation.journal_abbrev J.Virol. _citation.journal_volume 83 _citation.page_first 5556 _citation.page_last 5566 _citation.year 2009 _citation.journal_id_ASTM JOVIAM _citation.country US _citation.journal_id_ISSN 0022-538X _citation.journal_id_CSD 0825 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 19321620 _citation.pdbx_database_id_DOI 10.1128/JVI.02532-08 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Hafenstein, S.' 1 primary 'Bowman, V.D.' 2 primary 'Sun, T.' 3 primary 'Nelson, C.D.' 4 primary 'Palermo, L.M.' 5 primary 'Chipman, P.R.' 6 primary 'Battisti, A.J.' 7 primary 'Parrish, C.R.' 8 primary 'Rossmann, M.G.' 9 # _cell.entry_id 3IY2 _cell.length_a 1.000 _cell.length_b 1.000 _cell.length_c 1.000 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3IY2 _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer nat 'Antibody 6, light chain' 11739.198 1 ? ? 'fragment of antibody 6' ? 2 polymer nat 'Antibody 6, heavy chain' 12260.739 1 ? ? 'FRAGMENT OF ANTIBODY 6' ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;LMTQIPASLSASVGETVTITCRATKNIYSYLAWYQQKQGKSPQVLVHNAKTLTEGVPSRFSGSGSGTQFSLKINSLQPED FGSYYCQHHYATPYTFGGGTKLEIKRA ; ;LMTQIPASLSASVGETVTITCRATKNIYSYLAWYQQKQGKSPQVLVHNAKTLTEGVPSRFSGSGSGTQFSLKINSLQPED FGSYYCQHHYATPYTFGGGTKLEIKRA ; A ? 2 'polypeptide(L)' no no ;SGTVLARPGASVKMSCKASGYTFTYWMHWVKQRPGQGLEWIGAIFPGNSDSDYNQKFKGKAKLTAVTSTSNETAYMDLSS LTDSAVYYCTRKDYGTEVFVYWGQGTLVTVS ; ;SGTVLARPGASVKMSCKASGYTFTYWMHWVKQRPGQGLEWIGAIFPGNSDSDYNQKFKGKAKLTAVTSTSNETAYMDLSS LTDSAVYYCTRKDYGTEVFVYWGQGTLVTVS ; B ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 LEU n 1 2 MET n 1 3 THR n 1 4 GLN n 1 5 ILE n 1 6 PRO n 1 7 ALA n 1 8 SER n 1 9 LEU n 1 10 SER n 1 11 ALA n 1 12 SER n 1 13 VAL n 1 14 GLY n 1 15 GLU n 1 16 THR n 1 17 VAL n 1 18 THR n 1 19 ILE n 1 20 THR n 1 21 CYS n 1 22 ARG n 1 23 ALA n 1 24 THR n 1 25 LYS n 1 26 ASN n 1 27 ILE n 1 28 TYR n 1 29 SER n 1 30 TYR n 1 31 LEU n 1 32 ALA n 1 33 TRP n 1 34 TYR n 1 35 GLN n 1 36 GLN n 1 37 LYS n 1 38 GLN n 1 39 GLY n 1 40 LYS n 1 41 SER n 1 42 PRO n 1 43 GLN n 1 44 VAL n 1 45 LEU n 1 46 VAL n 1 47 HIS n 1 48 ASN n 1 49 ALA n 1 50 LYS n 1 51 THR n 1 52 LEU n 1 53 THR n 1 54 GLU n 1 55 GLY n 1 56 VAL n 1 57 PRO n 1 58 SER n 1 59 ARG n 1 60 PHE n 1 61 SER n 1 62 GLY n 1 63 SER n 1 64 GLY n 1 65 SER n 1 66 GLY n 1 67 THR n 1 68 GLN n 1 69 PHE n 1 70 SER n 1 71 LEU n 1 72 LYS n 1 73 ILE n 1 74 ASN n 1 75 SER n 1 76 LEU n 1 77 GLN n 1 78 PRO n 1 79 GLU n 1 80 ASP n 1 81 PHE n 1 82 GLY n 1 83 SER n 1 84 TYR n 1 85 TYR n 1 86 CYS n 1 87 GLN n 1 88 HIS n 1 89 HIS n 1 90 TYR n 1 91 ALA n 1 92 THR n 1 93 PRO n 1 94 TYR n 1 95 THR n 1 96 PHE n 1 97 GLY n 1 98 GLY n 1 99 GLY n 1 100 THR n 1 101 LYS n 1 102 LEU n 1 103 GLU n 1 104 ILE n 1 105 LYS n 1 106 ARG n 1 107 ALA n 2 1 SER n 2 2 GLY n 2 3 THR n 2 4 VAL n 2 5 LEU n 2 6 ALA n 2 7 ARG n 2 8 PRO n 2 9 GLY n 2 10 ALA n 2 11 SER n 2 12 VAL n 2 13 LYS n 2 14 MET n 2 15 SER n 2 16 CYS n 2 17 LYS n 2 18 ALA n 2 19 SER n 2 20 GLY n 2 21 TYR n 2 22 THR n 2 23 PHE n 2 24 THR n 2 25 TYR n 2 26 TRP n 2 27 MET n 2 28 HIS n 2 29 TRP n 2 30 VAL n 2 31 LYS n 2 32 GLN n 2 33 ARG n 2 34 PRO n 2 35 GLY n 2 36 GLN n 2 37 GLY n 2 38 LEU n 2 39 GLU n 2 40 TRP n 2 41 ILE n 2 42 GLY n 2 43 ALA n 2 44 ILE n 2 45 PHE n 2 46 PRO n 2 47 GLY n 2 48 ASN n 2 49 SER n 2 50 ASP n 2 51 SER n 2 52 ASP n 2 53 TYR n 2 54 ASN n 2 55 GLN n 2 56 LYS n 2 57 PHE n 2 58 LYS n 2 59 GLY n 2 60 LYS n 2 61 ALA n 2 62 LYS n 2 63 LEU n 2 64 THR n 2 65 ALA n 2 66 VAL n 2 67 THR n 2 68 SER n 2 69 THR n 2 70 SER n 2 71 ASN n 2 72 GLU n 2 73 THR n 2 74 ALA n 2 75 TYR n 2 76 MET n 2 77 ASP n 2 78 LEU n 2 79 SER n 2 80 SER n 2 81 LEU n 2 82 THR n 2 83 ASP n 2 84 SER n 2 85 ALA n 2 86 VAL n 2 87 TYR n 2 88 TYR n 2 89 CYS n 2 90 THR n 2 91 ARG n 2 92 LYS n 2 93 ASP n 2 94 TYR n 2 95 GLY n 2 96 THR n 2 97 GLU n 2 98 VAL n 2 99 PHE n 2 100 VAL n 2 101 TYR n 2 102 TRP n 2 103 GLY n 2 104 GLN n 2 105 GLY n 2 106 THR n 2 107 LEU n 2 108 VAL n 2 109 THR n 2 110 VAL n 2 111 SER n # loop_ _entity_src_nat.entity_id _entity_src_nat.pdbx_src_id _entity_src_nat.pdbx_alt_source_flag _entity_src_nat.pdbx_beg_seq_num _entity_src_nat.pdbx_end_seq_num _entity_src_nat.common_name _entity_src_nat.pdbx_organism_scientific _entity_src_nat.pdbx_ncbi_taxonomy_id _entity_src_nat.genus _entity_src_nat.species _entity_src_nat.strain _entity_src_nat.tissue _entity_src_nat.tissue_fraction _entity_src_nat.pdbx_secretion _entity_src_nat.pdbx_fragment _entity_src_nat.pdbx_variant _entity_src_nat.pdbx_cell_line _entity_src_nat.pdbx_atcc _entity_src_nat.pdbx_cellular_location _entity_src_nat.pdbx_organ _entity_src_nat.pdbx_organelle _entity_src_nat.pdbx_cell _entity_src_nat.pdbx_plasmid_name _entity_src_nat.pdbx_plasmid_details _entity_src_nat.details 1 1 sample ? ? ? 'Mus musculus' 10090 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 2 1 sample ? ? ? 'Mus musculus' 10090 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_align_begin _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_db_isoform 1 PDB 3IY2 3IY2 1 1 ;LMTQIPASLSASVGETVTITCRATKNIYSYLAWYQQKQGKSPQVLVHNAKTLTEGVPSRFSGSGSGTQFSLKINSLQPED FGSYYCQHHYATPYTFGGGTKLEIKRA ; ? 2 PDB 3IY2 3IY2 2 1 ;SGTVLARPGASVKMSCKASGYTFTYWMHWVKQRPGQGLEWIGAIFPGNSDSDYNQKFKGKAKLTAVTSTSNETAYMDLSS LTDSAVYYCTRKDYGTEVFVYWGQGTLVTVS ; ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3IY2 A 1 ? 107 ? 3IY2 1 ? 107 ? 1 107 2 2 3IY2 B 1 ? 111 ? 3IY2 108 ? 218 ? 108 218 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3IY2 _exptl.method 'ELECTRON MICROSCOPY' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews ? _exptl_crystal.density_percent_sol ? _exptl_crystal.description ? # _diffrn.id 1 _diffrn.ambient_temp ? _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type ? # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _refine_hist.pdbx_refine_id 'ELECTRON MICROSCOPY' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1690 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 0 _refine_hist.number_atoms_total 1690 _refine_hist.d_res_high . _refine_hist.d_res_low . # _struct.entry_id 3IY2 _struct.title 'Variable domains of the computer generated model (WAM) of Fab 6 fitted into the cryoEM reconstruction of the virus-Fab 6 complex' _struct.pdbx_descriptor 'antibody fragment' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3IY2 _struct_keywords.pdbx_keywords 'IMMUNE SYSTEM' _struct_keywords.text 'cryoEM, neutralizing antibody, parvovirus, canine, feline, fab footprint, IMMUNE SYSTEM' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLN A 77 ? PHE A 81 ? GLN A 77 PHE A 81 5 ? 5 HELX_P HELX_P2 2 GLN B 55 ? LYS B 58 ? GLN B 162 LYS B 165 5 ? 4 HELX_P HELX_P3 3 SER B 80 ? SER B 84 ? SER B 187 SER B 191 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf1 disulf ? ? A CYS 21 SG ? ? ? 1_555 A CYS 86 SG ? ? A CYS 21 A CYS 86 1_555 ? ? ? ? ? ? ? 2.587 ? disulf2 disulf ? ? B CYS 16 SG ? ? ? 1_555 B CYS 89 SG ? ? B CYS 123 B CYS 196 1_555 ? ? ? ? ? ? ? 2.575 ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 ILE 5 A . ? ILE 5 A PRO 6 A ? PRO 6 A 1 3.97 2 THR 92 A . ? THR 92 A PRO 93 A ? PRO 93 A 1 -2.95 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 4 ? B ? 6 ? C ? 6 ? D ? 3 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel B 1 2 ? parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel B 5 6 ? anti-parallel C 1 2 ? parallel C 2 3 ? anti-parallel C 3 4 ? anti-parallel C 4 5 ? anti-parallel C 5 6 ? anti-parallel D 1 2 ? anti-parallel D 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 MET A 2 ? ILE A 5 ? MET A 2 ILE A 5 A 2 VAL A 17 ? ALA A 23 ? VAL A 17 ALA A 23 A 3 GLN A 68 ? ILE A 73 ? GLN A 68 ILE A 73 A 4 PHE A 60 ? SER A 65 ? PHE A 60 SER A 65 B 1 SER A 8 ? SER A 12 ? SER A 8 SER A 12 B 2 THR A 100 ? LYS A 105 ? THR A 100 LYS A 105 B 3 GLY A 82 ? HIS A 88 ? GLY A 82 HIS A 88 B 4 LEU A 31 ? GLN A 36 ? LEU A 31 GLN A 36 B 5 GLN A 43 ? HIS A 47 ? GLN A 43 HIS A 47 B 6 THR A 51 ? LEU A 52 ? THR A 51 LEU A 52 C 1 VAL B 4 ? ALA B 6 ? VAL B 111 ALA B 113 C 2 LEU B 107 ? VAL B 110 ? LEU B 214 VAL B 217 C 3 ALA B 85 ? LYS B 92 ? ALA B 192 LYS B 199 C 4 TRP B 26 ? GLN B 32 ? TRP B 133 GLN B 139 C 5 LEU B 38 ? PHE B 45 ? LEU B 145 PHE B 152 C 6 ASP B 50 ? TYR B 53 ? ASP B 157 TYR B 160 D 1 SER B 11 ? LYS B 17 ? SER B 118 LYS B 124 D 2 ASN B 71 ? ASP B 77 ? ASN B 178 ASP B 184 D 3 ALA B 61 ? VAL B 66 ? ALA B 168 VAL B 173 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N ILE A 5 ? N ILE A 5 O THR A 20 ? O THR A 20 A 2 3 N ILE A 19 ? N ILE A 19 O LEU A 71 ? O LEU A 71 A 3 4 O SER A 70 ? O SER A 70 N SER A 63 ? N SER A 63 B 1 2 N ALA A 11 ? N ALA A 11 O LYS A 105 ? O LYS A 105 B 2 3 O LEU A 102 ? O LEU A 102 N GLY A 82 ? N GLY A 82 B 3 4 O TYR A 85 ? O TYR A 85 N TYR A 34 ? N TYR A 34 B 4 5 N TRP A 33 ? N TRP A 33 O VAL A 46 ? O VAL A 46 B 5 6 N HIS A 47 ? N HIS A 47 O THR A 51 ? O THR A 51 C 1 2 N VAL B 4 ? N VAL B 111 O THR B 109 ? O THR B 216 C 2 3 O VAL B 108 ? O VAL B 215 N ALA B 85 ? N ALA B 192 C 3 4 O VAL B 86 ? O VAL B 193 N GLN B 32 ? N GLN B 139 C 4 5 N LYS B 31 ? N LYS B 138 O GLU B 39 ? O GLU B 146 C 5 6 N ALA B 43 ? N ALA B 150 O ASP B 52 ? O ASP B 159 D 1 2 N MET B 14 ? N MET B 121 O ALA B 74 ? O ALA B 181 D 2 3 O THR B 73 ? O THR B 180 N THR B 64 ? N THR B 171 # _database_PDB_matrix.entry_id 3IY2 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3IY2 _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 LEU 1 1 1 LEU LEU A . n A 1 2 MET 2 2 2 MET MET A . n A 1 3 THR 3 3 3 THR THR A . n A 1 4 GLN 4 4 4 GLN GLN A . n A 1 5 ILE 5 5 5 ILE ILE A . n A 1 6 PRO 6 6 6 PRO PRO A . n A 1 7 ALA 7 7 7 ALA ALA A . n A 1 8 SER 8 8 8 SER SER A . n A 1 9 LEU 9 9 9 LEU LEU A . n A 1 10 SER 10 10 10 SER SER A . n A 1 11 ALA 11 11 11 ALA ALA A . n A 1 12 SER 12 12 12 SER SER A . n A 1 13 VAL 13 13 13 VAL VAL A . n A 1 14 GLY 14 14 14 GLY GLY A . n A 1 15 GLU 15 15 15 GLU GLU A . n A 1 16 THR 16 16 16 THR THR A . n A 1 17 VAL 17 17 17 VAL VAL A . n A 1 18 THR 18 18 18 THR THR A . n A 1 19 ILE 19 19 19 ILE ILE A . n A 1 20 THR 20 20 20 THR THR A . n A 1 21 CYS 21 21 21 CYS CYS A . n A 1 22 ARG 22 22 22 ARG ARG A . n A 1 23 ALA 23 23 23 ALA ALA A . n A 1 24 THR 24 24 24 THR THR A . n A 1 25 LYS 25 25 25 LYS LYS A . n A 1 26 ASN 26 26 26 ASN ASN A . n A 1 27 ILE 27 27 27 ILE ILE A . n A 1 28 TYR 28 28 28 TYR TYR A . n A 1 29 SER 29 29 29 SER SER A . n A 1 30 TYR 30 30 30 TYR TYR A . n A 1 31 LEU 31 31 31 LEU LEU A . n A 1 32 ALA 32 32 32 ALA ALA A . n A 1 33 TRP 33 33 33 TRP TRP A . n A 1 34 TYR 34 34 34 TYR TYR A . n A 1 35 GLN 35 35 35 GLN GLN A . n A 1 36 GLN 36 36 36 GLN GLN A . n A 1 37 LYS 37 37 37 LYS LYS A . n A 1 38 GLN 38 38 38 GLN GLN A . n A 1 39 GLY 39 39 39 GLY GLY A . n A 1 40 LYS 40 40 40 LYS LYS A . n A 1 41 SER 41 41 41 SER SER A . n A 1 42 PRO 42 42 42 PRO PRO A . n A 1 43 GLN 43 43 43 GLN GLN A . n A 1 44 VAL 44 44 44 VAL VAL A . n A 1 45 LEU 45 45 45 LEU LEU A . n A 1 46 VAL 46 46 46 VAL VAL A . n A 1 47 HIS 47 47 47 HIS HIS A . n A 1 48 ASN 48 48 48 ASN ASN A . n A 1 49 ALA 49 49 49 ALA ALA A . n A 1 50 LYS 50 50 50 LYS LYS A . n A 1 51 THR 51 51 51 THR THR A . n A 1 52 LEU 52 52 52 LEU LEU A . n A 1 53 THR 53 53 53 THR THR A . n A 1 54 GLU 54 54 54 GLU GLU A . n A 1 55 GLY 55 55 55 GLY GLY A . n A 1 56 VAL 56 56 56 VAL VAL A . n A 1 57 PRO 57 57 57 PRO PRO A . n A 1 58 SER 58 58 58 SER SER A . n A 1 59 ARG 59 59 59 ARG ARG A . n A 1 60 PHE 60 60 60 PHE PHE A . n A 1 61 SER 61 61 61 SER SER A . n A 1 62 GLY 62 62 62 GLY GLY A . n A 1 63 SER 63 63 63 SER SER A . n A 1 64 GLY 64 64 64 GLY GLY A . n A 1 65 SER 65 65 65 SER SER A . n A 1 66 GLY 66 66 66 GLY GLY A . n A 1 67 THR 67 67 67 THR THR A . n A 1 68 GLN 68 68 68 GLN GLN A . n A 1 69 PHE 69 69 69 PHE PHE A . n A 1 70 SER 70 70 70 SER SER A . n A 1 71 LEU 71 71 71 LEU LEU A . n A 1 72 LYS 72 72 72 LYS LYS A . n A 1 73 ILE 73 73 73 ILE ILE A . n A 1 74 ASN 74 74 74 ASN ASN A . n A 1 75 SER 75 75 75 SER SER A . n A 1 76 LEU 76 76 76 LEU LEU A . n A 1 77 GLN 77 77 77 GLN GLN A . n A 1 78 PRO 78 78 78 PRO PRO A . n A 1 79 GLU 79 79 79 GLU GLU A . n A 1 80 ASP 80 80 80 ASP ASP A . n A 1 81 PHE 81 81 81 PHE PHE A . n A 1 82 GLY 82 82 82 GLY GLY A . n A 1 83 SER 83 83 83 SER SER A . n A 1 84 TYR 84 84 84 TYR TYR A . n A 1 85 TYR 85 85 85 TYR TYR A . n A 1 86 CYS 86 86 86 CYS CYS A . n A 1 87 GLN 87 87 87 GLN GLN A . n A 1 88 HIS 88 88 88 HIS HIS A . n A 1 89 HIS 89 89 89 HIS HIS A . n A 1 90 TYR 90 90 90 TYR TYR A . n A 1 91 ALA 91 91 91 ALA ALA A . n A 1 92 THR 92 92 92 THR THR A . n A 1 93 PRO 93 93 93 PRO PRO A . n A 1 94 TYR 94 94 94 TYR TYR A . n A 1 95 THR 95 95 95 THR THR A . n A 1 96 PHE 96 96 96 PHE PHE A . n A 1 97 GLY 97 97 97 GLY GLY A . n A 1 98 GLY 98 98 98 GLY GLY A . n A 1 99 GLY 99 99 99 GLY GLY A . n A 1 100 THR 100 100 100 THR THR A . n A 1 101 LYS 101 101 101 LYS LYS A . n A 1 102 LEU 102 102 102 LEU LEU A . n A 1 103 GLU 103 103 103 GLU GLU A . n A 1 104 ILE 104 104 104 ILE ILE A . n A 1 105 LYS 105 105 105 LYS LYS A . n A 1 106 ARG 106 106 106 ARG ARG A . n A 1 107 ALA 107 107 107 ALA ALA A . n B 2 1 SER 1 108 108 SER SER B . n B 2 2 GLY 2 109 109 GLY GLY B . n B 2 3 THR 3 110 110 THR THR B . n B 2 4 VAL 4 111 111 VAL VAL B . n B 2 5 LEU 5 112 112 LEU LEU B . n B 2 6 ALA 6 113 113 ALA ALA B . n B 2 7 ARG 7 114 114 ARG ARG B . n B 2 8 PRO 8 115 115 PRO PRO B . n B 2 9 GLY 9 116 116 GLY GLY B . n B 2 10 ALA 10 117 117 ALA ALA B . n B 2 11 SER 11 118 118 SER SER B . n B 2 12 VAL 12 119 119 VAL VAL B . n B 2 13 LYS 13 120 120 LYS LYS B . n B 2 14 MET 14 121 121 MET MET B . n B 2 15 SER 15 122 122 SER SER B . n B 2 16 CYS 16 123 123 CYS CYS B . n B 2 17 LYS 17 124 124 LYS LYS B . n B 2 18 ALA 18 125 125 ALA ALA B . n B 2 19 SER 19 126 126 SER SER B . n B 2 20 GLY 20 127 127 GLY GLY B . n B 2 21 TYR 21 128 128 TYR TYR B . n B 2 22 THR 22 129 129 THR THR B . n B 2 23 PHE 23 130 130 PHE PHE B . n B 2 24 THR 24 131 131 THR THR B . n B 2 25 TYR 25 132 132 TYR TYR B . n B 2 26 TRP 26 133 133 TRP TRP B . n B 2 27 MET 27 134 134 MET MET B . n B 2 28 HIS 28 135 135 HIS HIS B . n B 2 29 TRP 29 136 136 TRP TRP B . n B 2 30 VAL 30 137 137 VAL VAL B . n B 2 31 LYS 31 138 138 LYS LYS B . n B 2 32 GLN 32 139 139 GLN GLN B . n B 2 33 ARG 33 140 140 ARG ARG B . n B 2 34 PRO 34 141 141 PRO PRO B . n B 2 35 GLY 35 142 142 GLY GLY B . n B 2 36 GLN 36 143 143 GLN GLN B . n B 2 37 GLY 37 144 144 GLY GLY B . n B 2 38 LEU 38 145 145 LEU LEU B . n B 2 39 GLU 39 146 146 GLU GLU B . n B 2 40 TRP 40 147 147 TRP TRP B . n B 2 41 ILE 41 148 148 ILE ILE B . n B 2 42 GLY 42 149 149 GLY GLY B . n B 2 43 ALA 43 150 150 ALA ALA B . n B 2 44 ILE 44 151 151 ILE ILE B . n B 2 45 PHE 45 152 152 PHE PHE B . n B 2 46 PRO 46 153 153 PRO PRO B . n B 2 47 GLY 47 154 154 GLY GLY B . n B 2 48 ASN 48 155 155 ASN ASN B . n B 2 49 SER 49 156 156 SER SER B . n B 2 50 ASP 50 157 157 ASP ASP B . n B 2 51 SER 51 158 158 SER SER B . n B 2 52 ASP 52 159 159 ASP ASP B . n B 2 53 TYR 53 160 160 TYR TYR B . n B 2 54 ASN 54 161 161 ASN ASN B . n B 2 55 GLN 55 162 162 GLN GLN B . n B 2 56 LYS 56 163 163 LYS LYS B . n B 2 57 PHE 57 164 164 PHE PHE B . n B 2 58 LYS 58 165 165 LYS LYS B . n B 2 59 GLY 59 166 166 GLY GLY B . n B 2 60 LYS 60 167 167 LYS LYS B . n B 2 61 ALA 61 168 168 ALA ALA B . n B 2 62 LYS 62 169 169 LYS LYS B . n B 2 63 LEU 63 170 170 LEU LEU B . n B 2 64 THR 64 171 171 THR THR B . n B 2 65 ALA 65 172 172 ALA ALA B . n B 2 66 VAL 66 173 173 VAL VAL B . n B 2 67 THR 67 174 174 THR THR B . n B 2 68 SER 68 175 175 SER SER B . n B 2 69 THR 69 176 176 THR THR B . n B 2 70 SER 70 177 177 SER SER B . n B 2 71 ASN 71 178 178 ASN ASN B . n B 2 72 GLU 72 179 179 GLU GLU B . n B 2 73 THR 73 180 180 THR THR B . n B 2 74 ALA 74 181 181 ALA ALA B . n B 2 75 TYR 75 182 182 TYR TYR B . n B 2 76 MET 76 183 183 MET MET B . n B 2 77 ASP 77 184 184 ASP ASP B . n B 2 78 LEU 78 185 185 LEU LEU B . n B 2 79 SER 79 186 186 SER SER B . n B 2 80 SER 80 187 187 SER SER B . n B 2 81 LEU 81 188 188 LEU LEU B . n B 2 82 THR 82 189 189 THR THR B . n B 2 83 ASP 83 190 190 ASP ASP B . n B 2 84 SER 84 191 191 SER SER B . n B 2 85 ALA 85 192 192 ALA ALA B . n B 2 86 VAL 86 193 193 VAL VAL B . n B 2 87 TYR 87 194 194 TYR TYR B . n B 2 88 TYR 88 195 195 TYR TYR B . n B 2 89 CYS 89 196 196 CYS CYS B . n B 2 90 THR 90 197 197 THR THR B . n B 2 91 ARG 91 198 198 ARG ARG B . n B 2 92 LYS 92 199 199 LYS LYS B . n B 2 93 ASP 93 200 200 ASP ASP B . n B 2 94 TYR 94 201 201 TYR TYR B . n B 2 95 GLY 95 202 202 GLY GLY B . n B 2 96 THR 96 203 203 THR THR B . n B 2 97 GLU 97 204 204 GLU GLU B . n B 2 98 VAL 98 205 205 VAL VAL B . n B 2 99 PHE 99 206 206 PHE PHE B . n B 2 100 VAL 100 207 207 VAL VAL B . n B 2 101 TYR 101 208 208 TYR TYR B . n B 2 102 TRP 102 209 209 TRP TRP B . n B 2 103 GLY 103 210 210 GLY GLY B . n B 2 104 GLN 104 211 211 GLN GLN B . n B 2 105 GLY 105 212 212 GLY GLY B . n B 2 106 THR 106 213 213 THR THR B . n B 2 107 LEU 107 214 214 LEU LEU B . n B 2 108 VAL 108 215 215 VAL VAL B . n B 2 109 THR 109 216 216 THR THR B . n B 2 110 VAL 110 217 217 VAL VAL B . n B 2 111 SER 111 218 218 SER SER B . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2009-05-12 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2018-07-18 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Data collection' # _pdbx_audit_revision_category.ordinal 1 _pdbx_audit_revision_category.revision_ordinal 3 _pdbx_audit_revision_category.data_content_type 'Structure model' _pdbx_audit_revision_category.category em_software # _pdbx_audit_revision_item.ordinal 1 _pdbx_audit_revision_item.revision_ordinal 3 _pdbx_audit_revision_item.data_content_type 'Structure model' _pdbx_audit_revision_item.item '_em_software.image_processing_id' # _em_3d_reconstruction.entry_id 3IY2 _em_3d_reconstruction.id 1 _em_3d_reconstruction.resolution_method 'FSC 0.5 CUT-OFF' _em_3d_reconstruction.symmetry_type POINT _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.method 'common lines' _em_3d_reconstruction.resolution 18 _em_3d_reconstruction.num_particles 2520 _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.magnification_calibration ? _em_3d_reconstruction.details ? _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.algorithm ? # _em_buffer.id 1 _em_buffer.specimen_id 1 _em_buffer.name ? _em_buffer.pH 7.5 _em_buffer.details '10mM Tris-HCL' # loop_ _em_entity_assembly.id _em_entity_assembly.name _em_entity_assembly.type _em_entity_assembly.parent_id _em_entity_assembly.synonym _em_entity_assembly.details _em_entity_assembly.oligomeric_details 1 'Fab fragment from MAb B interacting with feline panleukopenia virus (FPV)' COMPLEX 0 ? ? ? 2 'feline panleukopenia virus' VIRUS 1 FPV ? ? # _em_image_scans.entry_id 3IY2 _em_image_scans.id 1 _em_image_scans.image_recording_id 1 _em_image_scans.number_digital_images 42 _em_image_scans.scanner_model 'ZEISS SCAI' _em_image_scans.sampling_size 7 _em_image_scans.od_range 0.9 _em_image_scans.quant_bit_size ? _em_image_scans.details 'scanned at 7 microns and bin averaged to 14' _em_image_scans.citation_id ? # _em_imaging.entry_id 3IY2 _em_imaging.id 1 _em_imaging.microscope_model 'FEI/PHILIPS CM300FEG/T' _em_imaging.electron_source 'TUNGSTEN HAIRPIN' _em_imaging.specimen_id 1 _em_imaging.specimen_holder_type 'side mounted nitrogen cooled' _em_imaging.specimen_holder_model 'GATAN LIQUID NITROGEN' _em_imaging.accelerating_voltage 300 _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.mode 'BRIGHT FIELD' _em_imaging.nominal_defocus_min 1.2 _em_imaging.nominal_defocus_max 4.2 _em_imaging.tilt_angle_min 0.0 _em_imaging.tilt_angle_max 0.0 _em_imaging.nominal_magnification 45000 _em_imaging.calibrated_magnification 47190 _em_imaging.temperature 93 _em_imaging.recording_temperature_minimum 93 _em_imaging.recording_temperature_maximum 93 _em_imaging.detector_distance 0.0 _em_imaging.date 2005-04-15 _em_imaging.electron_beam_tilt_params ? _em_imaging.astigmatism 'objective lens astigmatism was corrected at 100,000 times magnification' _em_imaging.details ? _em_imaging.nominal_cs ? _em_imaging.citation_id ? # _em_virus_entity.id 1 _em_virus_entity.virus_host_category VERTEBRATES _em_virus_entity.entity_assembly_id 1 _em_virus_entity.virus_type VIRION _em_virus_entity.virus_isolate STRAIN _em_virus_entity.empty YES _em_virus_entity.enveloped NO _em_virus_entity.details ? # _em_vitrification.entry_id 3IY2 _em_vitrification.id 1 _em_vitrification.instrument 'HOMEMADE PLUNGER' _em_vitrification.cryogen_name ETHANE _em_vitrification.humidity ? _em_vitrification.temp 120 _em_vitrification.method 'blot before plunging' _em_vitrification.time_resolved_state ? _em_vitrification.details ? _em_vitrification.citation_id ? _em_vitrification.specimen_id 1 # _em_experiment.reconstruction_method 'SINGLE PARTICLE' _em_experiment.entry_id 3IY2 _em_experiment.id 1 _em_experiment.aggregation_state PARTICLE _em_experiment.entity_assembly_id 1 # _em_single_particle_entity.entry_id 3IY2 _em_single_particle_entity.id 1 _em_single_particle_entity.point_symmetry I _em_single_particle_entity.image_processing_id 1 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 C A THR 67 ? ? O A THR 67 ? ? 1.016 1.229 -0.213 0.019 N 2 1 C A THR 67 ? ? N A GLN 68 ? ? 1.503 1.336 0.167 0.023 Y 3 1 CZ B PHE 164 ? ? CE2 B PHE 164 ? ? 1.233 1.369 -0.136 0.019 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 CA A VAL 17 ? ? CB A VAL 17 ? ? CG2 A VAL 17 ? ? 97.03 110.90 -13.87 1.50 N 2 1 CB A TYR 30 ? ? CG A TYR 30 ? ? CD2 A TYR 30 ? ? 117.07 121.00 -3.93 0.60 N 3 1 N A GLU 54 ? ? CA A GLU 54 ? ? CB A GLU 54 ? ? 98.70 110.60 -11.90 1.80 N 4 1 NE A ARG 59 ? ? CZ A ARG 59 ? ? NH1 A ARG 59 ? ? 123.63 120.30 3.33 0.50 N 5 1 OE1 A GLN 68 ? ? CD A GLN 68 ? ? NE2 A GLN 68 ? ? 103.25 121.90 -18.65 2.30 N 6 1 CG A GLN 68 ? ? CD A GLN 68 ? ? NE2 A GLN 68 ? ? 134.78 116.70 18.08 2.40 N 7 1 ND1 A HIS 88 ? ? CE1 A HIS 88 ? ? NE2 A HIS 88 ? ? 120.81 111.50 9.31 1.30 N 8 1 ND1 A HIS 89 ? ? CE1 A HIS 89 ? ? NE2 A HIS 89 ? ? 119.31 111.50 7.81 1.30 N 9 1 CB A PRO 93 ? ? CA A PRO 93 ? ? C A PRO 93 ? ? 86.14 112.00 -25.86 2.50 N 10 1 N B HIS 135 ? ? CA B HIS 135 ? ? CB B HIS 135 ? ? 94.96 110.60 -15.64 1.80 N 11 1 CB B HIS 135 ? ? CG B HIS 135 ? ? CD2 B HIS 135 ? ? 111.93 129.70 -17.77 1.60 N 12 1 CG B HIS 135 ? ? ND1 B HIS 135 ? ? CE1 B HIS 135 ? ? 97.78 105.70 -7.92 1.30 N 13 1 ND1 B HIS 135 ? ? CE1 B HIS 135 ? ? NE2 B HIS 135 ? ? 119.36 111.50 7.86 1.30 N 14 1 CD1 B TRP 136 ? ? NE1 B TRP 136 ? ? CE2 B TRP 136 ? ? 103.51 109.00 -5.49 0.90 N 15 1 CG B GLU 146 ? ? CD B GLU 146 ? ? OE1 B GLU 146 ? ? 96.98 118.30 -21.32 2.00 N 16 1 CG B GLU 146 ? ? CD B GLU 146 ? ? OE2 B GLU 146 ? ? 136.18 118.30 17.88 2.00 N 17 1 CD1 B TRP 147 ? ? NE1 B TRP 147 ? ? CE2 B TRP 147 ? ? 101.87 109.00 -7.13 0.90 N 18 1 CG1 B ILE 148 ? ? CB B ILE 148 ? ? CG2 B ILE 148 ? ? 94.60 111.40 -16.80 2.20 N 19 1 CB B PHE 164 ? ? CG B PHE 164 ? ? CD2 B PHE 164 ? ? 114.31 120.80 -6.49 0.70 N 20 1 CD1 B PHE 164 ? ? CG B PHE 164 ? ? CD2 B PHE 164 ? ? 127.30 118.30 9.00 1.30 N 21 1 CB B PHE 164 ? ? CG B PHE 164 ? ? CD1 B PHE 164 ? ? 116.10 120.80 -4.70 0.70 N 22 1 CG B PHE 164 ? ? CD1 B PHE 164 ? ? CE1 B PHE 164 ? ? 113.87 120.80 -6.93 1.10 N 23 1 CG B PHE 164 ? ? CD2 B PHE 164 ? ? CE2 B PHE 164 ? ? 109.79 120.80 -11.01 1.10 N 24 1 CD1 B PHE 164 ? ? CE1 B PHE 164 ? ? CZ B PHE 164 ? ? 86.40 120.10 -33.70 1.20 N 25 1 CZ B PHE 164 ? ? CE2 B PHE 164 ? ? CD2 B PHE 164 ? ? 93.90 120.10 -26.20 1.20 N 26 1 CB B LEU 170 ? ? CA B LEU 170 ? ? C B LEU 170 ? ? 97.44 110.20 -12.76 1.90 N 27 1 N B LEU 170 ? ? CA B LEU 170 ? ? CB B LEU 170 ? ? 90.34 110.40 -20.06 2.00 N 28 1 CB B LEU 170 ? ? CG B LEU 170 ? ? CD2 B LEU 170 ? ? 95.70 111.00 -15.30 1.70 N 29 1 CA B VAL 205 ? ? CB B VAL 205 ? ? CG2 B VAL 205 ? ? 94.93 110.90 -15.97 1.50 N 30 1 CB B TYR 208 ? ? CG B TYR 208 ? ? CD2 B TYR 208 ? ? 116.49 121.00 -4.51 0.60 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 TYR A 28 ? ? 55.55 -114.08 2 1 LEU A 45 ? ? -122.24 -59.25 3 1 ALA A 49 ? ? 61.48 -51.67 4 1 ALA A 91 ? ? 66.26 153.16 5 1 VAL B 111 ? ? 123.04 -169.09 6 1 ASN B 155 ? ? -177.35 -17.30 7 1 ALA B 192 ? ? 169.85 172.49 8 1 GLU B 204 ? ? -81.42 -104.97 9 1 TYR B 208 ? ? -31.22 151.10 10 1 TRP B 209 ? ? -178.38 2.24 11 1 THR B 213 ? ? 163.32 103.72 # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 GLN A 68 ? ? 0.098 'SIDE CHAIN' 2 1 HIS B 135 ? ? 0.187 'SIDE CHAIN' 3 1 PHE B 164 ? ? 0.182 'SIDE CHAIN' 4 1 PHE B 206 ? ? 0.112 'SIDE CHAIN' 5 1 TYR B 208 ? ? 0.132 'SIDE CHAIN' # _pdbx_validate_chiral.id 1 _pdbx_validate_chiral.PDB_model_num 1 _pdbx_validate_chiral.auth_atom_id CA _pdbx_validate_chiral.label_alt_id ? _pdbx_validate_chiral.auth_asym_id B _pdbx_validate_chiral.auth_comp_id TYR _pdbx_validate_chiral.auth_seq_id 208 _pdbx_validate_chiral.PDB_ins_code ? _pdbx_validate_chiral.details PLANAR _pdbx_validate_chiral.omega . # _em_ctf_correction.id 1 _em_ctf_correction.details robem _em_ctf_correction.type . # _em_image_processing.id 1 _em_image_processing.image_recording_id 1 _em_image_processing.details ? # _em_image_recording.avg_electron_dose_per_image 37 _em_image_recording.details ? _em_image_recording.id 1 _em_image_recording.film_or_detector_model 'KODAK SO-163 FILM' _em_image_recording.imaging_id 1 _em_image_recording.detector_mode ? _em_image_recording.average_exposure_time ? _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged ? _em_image_recording.num_real_images ? # loop_ _em_software.id _em_software.name _em_software.version _em_software.category _em_software.details _em_software.image_processing_id 1 EM3DR ? RECONSTRUCTION ? 1 2 EMPFT ? RECONSTRUCTION ? 1 # _em_specimen.experiment_id 1 _em_specimen.id 1 _em_specimen.concentration 1 _em_specimen.vitrification_applied YES _em_specimen.staining_applied NO _em_specimen.embedding_applied NO _em_specimen.shadowing_applied NO _em_specimen.details '10mM Tris-HCL' # _em_virus_natural_host.entity_assembly_id 1 _em_virus_natural_host.id 1 _em_virus_natural_host.ncbi_tax_id 9685 _em_virus_natural_host.organism 'Felis catus' _em_virus_natural_host.strain ? # _em_virus_shell.entity_assembly_id 1 _em_virus_shell.id 1 _em_virus_shell.name ? _em_virus_shell.diameter ? _em_virus_shell.triangulation 1 #