data_3IY5 # _entry.id 3IY5 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.296 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 3IY5 RCSB RCSB160011 WWPDB D_1000160011 # _pdbx_database_related.db_name EMDB _pdbx_database_related.db_id EMD-5110 _pdbx_database_related.content_type 'associated EM volume' _pdbx_database_related.details ;the cryoEM reconstruction of the virus-Fab 16 complex ; # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3IY5 _pdbx_database_status.recvd_initial_deposition_date 2009-04-09 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Hafenstein, S.' 1 'Bowman, V.D.' 2 'Sun, T.' 3 'Nelson, C.D.' 4 'Palermo, L.M.' 5 'Chipman, P.R.' 6 'Battisti, A.J.' 7 'Parrish, C.R.' 8 'Rossmann, M.G.' 9 # _citation.id primary _citation.title 'Structural comparison of different antibodies interacting with parvovirus capsids' _citation.journal_abbrev J.Virol. _citation.journal_volume 83 _citation.page_first 5556 _citation.page_last 5566 _citation.year 2009 _citation.journal_id_ASTM JOVIAM _citation.country US _citation.journal_id_ISSN 0022-538X _citation.journal_id_CSD 0825 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 19321620 _citation.pdbx_database_id_DOI 10.1128/JVI.02532-08 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Hafenstein, S.' 1 primary 'Bowman, V.D.' 2 primary 'Sun, T.' 3 primary 'Nelson, C.D.' 4 primary 'Palermo, L.M.' 5 primary 'Chipman, P.R.' 6 primary 'Battisti, A.J.' 7 primary 'Parrish, C.R.' 8 primary 'Rossmann, M.G.' 9 # _cell.entry_id 3IY5 _cell.length_a 1.000 _cell.length_b 1.000 _cell.length_c 1.000 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3IY5 _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer nat 'antibody fragment IGG2A (light chain)' 11631.756 1 ? ? Fab ? 2 polymer nat 'antibody fragment IGG2A (heavy chain)' 13754.432 1 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;DIQLTQSPAFMAASPGEKVTITCSVSSSISSSNLHWYQQKSETSPKPWIYGTSNLASGVPVRFSGSGSGTSYSLTISSME AEDAATYYCQQWNSYPYTFGGGTKLEIK ; ;DIQLTQSPAFMAASPGEKVTITCSVSSSISSSNLHWYQQKSETSPKPWIYGTSNLASGVPVRFSGSGSGTSYSLTISSME AEDAATYYCQQWNSYPYTFGGGTKLEIK ; A ? 2 'polypeptide(L)' no no ;EVKLQESGGGLVQPGGSMKLSCVASGFTFNNYWMSWVRQSPEKGLEWVAEIRLNSDNFATHYAESVKGKFIISRDDSKSR LYLQMNSLRAEDTGIYYCVLRPLFYYAVDYWGQGTSVTVSSA ; ;EVKLQESGGGLVQPGGSMKLSCVASGFTFNNYWMSWVRQSPEKGLEWVAEIRLNSDNFATHYAESVKGKFIISRDDSKSR LYLQMNSLRAEDTGIYYCVLRPLFYYAVDYWGQGTSVTVSSA ; B ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ASP n 1 2 ILE n 1 3 GLN n 1 4 LEU n 1 5 THR n 1 6 GLN n 1 7 SER n 1 8 PRO n 1 9 ALA n 1 10 PHE n 1 11 MET n 1 12 ALA n 1 13 ALA n 1 14 SER n 1 15 PRO n 1 16 GLY n 1 17 GLU n 1 18 LYS n 1 19 VAL n 1 20 THR n 1 21 ILE n 1 22 THR n 1 23 CYS n 1 24 SER n 1 25 VAL n 1 26 SER n 1 27 SER n 1 28 SER n 1 29 ILE n 1 30 SER n 1 31 SER n 1 32 SER n 1 33 ASN n 1 34 LEU n 1 35 HIS n 1 36 TRP n 1 37 TYR n 1 38 GLN n 1 39 GLN n 1 40 LYS n 1 41 SER n 1 42 GLU n 1 43 THR n 1 44 SER n 1 45 PRO n 1 46 LYS n 1 47 PRO n 1 48 TRP n 1 49 ILE n 1 50 TYR n 1 51 GLY n 1 52 THR n 1 53 SER n 1 54 ASN n 1 55 LEU n 1 56 ALA n 1 57 SER n 1 58 GLY n 1 59 VAL n 1 60 PRO n 1 61 VAL n 1 62 ARG n 1 63 PHE n 1 64 SER n 1 65 GLY n 1 66 SER n 1 67 GLY n 1 68 SER n 1 69 GLY n 1 70 THR n 1 71 SER n 1 72 TYR n 1 73 SER n 1 74 LEU n 1 75 THR n 1 76 ILE n 1 77 SER n 1 78 SER n 1 79 MET n 1 80 GLU n 1 81 ALA n 1 82 GLU n 1 83 ASP n 1 84 ALA n 1 85 ALA n 1 86 THR n 1 87 TYR n 1 88 TYR n 1 89 CYS n 1 90 GLN n 1 91 GLN n 1 92 TRP n 1 93 ASN n 1 94 SER n 1 95 TYR n 1 96 PRO n 1 97 TYR n 1 98 THR n 1 99 PHE n 1 100 GLY n 1 101 GLY n 1 102 GLY n 1 103 THR n 1 104 LYS n 1 105 LEU n 1 106 GLU n 1 107 ILE n 1 108 LYS n 2 1 GLU n 2 2 VAL n 2 3 LYS n 2 4 LEU n 2 5 GLN n 2 6 GLU n 2 7 SER n 2 8 GLY n 2 9 GLY n 2 10 GLY n 2 11 LEU n 2 12 VAL n 2 13 GLN n 2 14 PRO n 2 15 GLY n 2 16 GLY n 2 17 SER n 2 18 MET n 2 19 LYS n 2 20 LEU n 2 21 SER n 2 22 CYS n 2 23 VAL n 2 24 ALA n 2 25 SER n 2 26 GLY n 2 27 PHE n 2 28 THR n 2 29 PHE n 2 30 ASN n 2 31 ASN n 2 32 TYR n 2 33 TRP n 2 34 MET n 2 35 SER n 2 36 TRP n 2 37 VAL n 2 38 ARG n 2 39 GLN n 2 40 SER n 2 41 PRO n 2 42 GLU n 2 43 LYS n 2 44 GLY n 2 45 LEU n 2 46 GLU n 2 47 TRP n 2 48 VAL n 2 49 ALA n 2 50 GLU n 2 51 ILE n 2 52 ARG n 2 53 LEU n 2 54 ASN n 2 55 SER n 2 56 ASP n 2 57 ASN n 2 58 PHE n 2 59 ALA n 2 60 THR n 2 61 HIS n 2 62 TYR n 2 63 ALA n 2 64 GLU n 2 65 SER n 2 66 VAL n 2 67 LYS n 2 68 GLY n 2 69 LYS n 2 70 PHE n 2 71 ILE n 2 72 ILE n 2 73 SER n 2 74 ARG n 2 75 ASP n 2 76 ASP n 2 77 SER n 2 78 LYS n 2 79 SER n 2 80 ARG n 2 81 LEU n 2 82 TYR n 2 83 LEU n 2 84 GLN n 2 85 MET n 2 86 ASN n 2 87 SER n 2 88 LEU n 2 89 ARG n 2 90 ALA n 2 91 GLU n 2 92 ASP n 2 93 THR n 2 94 GLY n 2 95 ILE n 2 96 TYR n 2 97 TYR n 2 98 CYS n 2 99 VAL n 2 100 LEU n 2 101 ARG n 2 102 PRO n 2 103 LEU n 2 104 PHE n 2 105 TYR n 2 106 TYR n 2 107 ALA n 2 108 VAL n 2 109 ASP n 2 110 TYR n 2 111 TRP n 2 112 GLY n 2 113 GLN n 2 114 GLY n 2 115 THR n 2 116 SER n 2 117 VAL n 2 118 THR n 2 119 VAL n 2 120 SER n 2 121 SER n 2 122 ALA n # loop_ _entity_src_nat.entity_id _entity_src_nat.pdbx_src_id _entity_src_nat.pdbx_alt_source_flag _entity_src_nat.pdbx_beg_seq_num _entity_src_nat.pdbx_end_seq_num _entity_src_nat.common_name _entity_src_nat.pdbx_organism_scientific _entity_src_nat.pdbx_ncbi_taxonomy_id _entity_src_nat.genus _entity_src_nat.species _entity_src_nat.strain _entity_src_nat.tissue _entity_src_nat.tissue_fraction _entity_src_nat.pdbx_secretion _entity_src_nat.pdbx_fragment _entity_src_nat.pdbx_variant _entity_src_nat.pdbx_cell_line _entity_src_nat.pdbx_atcc _entity_src_nat.pdbx_cellular_location _entity_src_nat.pdbx_organ _entity_src_nat.pdbx_organelle _entity_src_nat.pdbx_cell _entity_src_nat.pdbx_plasmid_name _entity_src_nat.pdbx_plasmid_details _entity_src_nat.details 1 1 sample ? ? ? 'Mus musculus' 10090 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 2 1 sample ? ? ? 'Mus musculus' 10090 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_align_begin _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_db_isoform 1 PDB 3IY5 3IY5 1 ? ? ? 2 PDB 3IY5 3IY5 2 ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3IY5 A 1 ? 108 ? 3IY5 1 ? 108 ? 1 108 2 2 3IY5 B 1 ? 122 ? 3IY5 109 ? 230 ? 109 230 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3IY5 _exptl.method 'ELECTRON MICROSCOPY' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews ? _exptl_crystal.density_percent_sol ? _exptl_crystal.description ? # _diffrn.id 1 _diffrn.ambient_temp ? _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type ? # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _refine_hist.pdbx_refine_id 'ELECTRON MICROSCOPY' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1785 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 0 _refine_hist.number_atoms_total 1785 _refine_hist.d_res_high . _refine_hist.d_res_low . # _struct.entry_id 3IY5 _struct.title 'Variable domains of the mouse Fab (1AIF) fitted into the cryoEM reconstruction of the virus-Fab 16 complex' _struct.pdbx_descriptor 'antibody fragment 1AIF.pdb fitted into cryoEM map of complex FAb16-feline parvovirus' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3IY5 _struct_keywords.pdbx_keywords 'IMMUNE SYSTEM' _struct_keywords.text 'cryoEM, neutralizing antibody, parvovirus, canine, feline, fab footprint, IMMUNE SYSTEM' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 30 ? SER A 32 ? SER A 30 SER A 32 5 ? 3 HELX_P HELX_P2 2 ASP B 75 ? SER B 79 ? ASP B 183 SER B 187 5 ? 5 HELX_P HELX_P3 3 ARG B 89 ? THR B 93 ? ARG B 197 THR B 201 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf1 disulf ? ? A CYS 23 SG ? ? ? 1_555 A CYS 89 SG ? ? A CYS 23 A CYS 89 1_555 ? ? ? ? ? ? ? 2.067 ? disulf2 disulf ? ? B CYS 22 SG ? ? ? 1_555 B CYS 98 SG ? ? B CYS 130 B CYS 206 1_555 ? ? ? ? ? ? ? 2.036 ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 SER 7 A . ? SER 7 A PRO 8 A ? PRO 8 A 1 -0.05 2 TYR 95 A . ? TYR 95 A PRO 96 A ? PRO 96 A 1 -0.03 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 3 ? B ? 5 ? C ? 2 ? D ? 5 ? E ? 5 ? F ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel C 1 2 ? anti-parallel D 1 2 ? parallel D 2 3 ? anti-parallel D 3 4 ? anti-parallel D 4 5 ? anti-parallel E 1 2 ? parallel E 2 3 ? anti-parallel E 3 4 ? anti-parallel E 4 5 ? anti-parallel F 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 VAL A 19 ? SER A 24 ? VAL A 19 SER A 24 A 2 SER A 71 ? ILE A 76 ? SER A 71 ILE A 76 A 3 PHE A 63 ? GLY A 67 ? PHE A 63 GLY A 67 B 1 ASN A 54 ? LEU A 55 ? ASN A 54 LEU A 55 B 2 LYS A 46 ? TYR A 50 ? LYS A 46 TYR A 50 B 3 LEU A 34 ? GLN A 39 ? LEU A 34 GLN A 39 B 4 THR A 86 ? GLN A 91 ? THR A 86 GLN A 91 B 5 THR A 103 ? LYS A 104 ? THR A 103 LYS A 104 C 1 LYS B 3 ? GLN B 5 ? LYS B 111 GLN B 113 C 2 VAL B 23 ? SER B 25 ? VAL B 131 SER B 133 D 1 GLY B 10 ? VAL B 12 ? GLY B 118 VAL B 120 D 2 SER B 116 ? VAL B 119 ? SER B 224 VAL B 227 D 3 GLY B 94 ? PRO B 102 ? GLY B 202 PRO B 210 D 4 TYR B 32 ? SER B 40 ? TYR B 140 SER B 148 D 5 GLY B 44 ? TRP B 47 ? GLY B 152 TRP B 155 E 1 GLY B 10 ? VAL B 12 ? GLY B 118 VAL B 120 E 2 SER B 116 ? VAL B 119 ? SER B 224 VAL B 227 E 3 GLY B 94 ? PRO B 102 ? GLY B 202 PRO B 210 E 4 TYR B 32 ? SER B 40 ? TYR B 140 SER B 148 E 5 ILE B 51 ? ARG B 52 ? ILE B 159 ARG B 160 F 1 PHE B 70 ? SER B 73 ? PHE B 178 SER B 181 F 2 TYR B 82 ? MET B 85 ? TYR B 190 MET B 193 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N CYS A 23 ? N CYS A 23 O TYR A 72 ? O TYR A 72 A 2 3 O THR A 75 ? O THR A 75 N SER A 64 ? N SER A 64 B 1 2 O ASN A 54 ? O ASN A 54 N TYR A 50 ? N TYR A 50 B 2 3 O ILE A 49 ? O ILE A 49 N TRP A 36 ? N TRP A 36 B 3 4 N TYR A 37 ? N TYR A 37 O TYR A 88 ? O TYR A 88 B 4 5 N TYR A 87 ? N TYR A 87 O THR A 103 ? O THR A 103 C 1 2 N GLN B 5 ? N GLN B 113 O VAL B 23 ? O VAL B 131 D 1 2 N VAL B 12 ? N VAL B 120 O THR B 118 ? O THR B 226 D 2 3 O VAL B 117 ? O VAL B 225 N GLY B 94 ? N GLY B 202 D 3 4 O TYR B 97 ? O TYR B 205 N VAL B 37 ? N VAL B 145 D 4 5 N SER B 40 ? N SER B 148 O GLY B 44 ? O GLY B 152 E 1 2 N VAL B 12 ? N VAL B 120 O THR B 118 ? O THR B 226 E 2 3 O VAL B 117 ? O VAL B 225 N GLY B 94 ? N GLY B 202 E 3 4 O TYR B 97 ? O TYR B 205 N VAL B 37 ? N VAL B 145 E 4 5 N MET B 34 ? N MET B 142 O ILE B 51 ? O ILE B 159 F 1 2 N ILE B 71 ? N ILE B 179 O GLN B 84 ? O GLN B 192 # _database_PDB_matrix.entry_id 3IY5 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3IY5 _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ASP 1 1 1 ASP ASP A . n A 1 2 ILE 2 2 2 ILE ILE A . n A 1 3 GLN 3 3 3 GLN GLN A . n A 1 4 LEU 4 4 4 LEU LEU A . n A 1 5 THR 5 5 5 THR THR A . n A 1 6 GLN 6 6 6 GLN GLN A . n A 1 7 SER 7 7 7 SER SER A . n A 1 8 PRO 8 8 8 PRO PRO A . n A 1 9 ALA 9 9 9 ALA ALA A . n A 1 10 PHE 10 10 10 PHE PHE A . n A 1 11 MET 11 11 11 MET MET A . n A 1 12 ALA 12 12 12 ALA ALA A . n A 1 13 ALA 13 13 13 ALA ALA A . n A 1 14 SER 14 14 14 SER SER A . n A 1 15 PRO 15 15 15 PRO PRO A . n A 1 16 GLY 16 16 16 GLY GLY A . n A 1 17 GLU 17 17 17 GLU GLU A . n A 1 18 LYS 18 18 18 LYS LYS A . n A 1 19 VAL 19 19 19 VAL VAL A . n A 1 20 THR 20 20 20 THR THR A . n A 1 21 ILE 21 21 21 ILE ILE A . n A 1 22 THR 22 22 22 THR THR A . n A 1 23 CYS 23 23 23 CYS CYS A . n A 1 24 SER 24 24 24 SER SER A . n A 1 25 VAL 25 25 25 VAL VAL A . n A 1 26 SER 26 26 26 SER SER A . n A 1 27 SER 27 27 27 SER SER A . n A 1 28 SER 28 28 28 SER SER A . n A 1 29 ILE 29 29 29 ILE ILE A . n A 1 30 SER 30 30 30 SER SER A . n A 1 31 SER 31 31 31 SER SER A . n A 1 32 SER 32 32 32 SER SER A . n A 1 33 ASN 33 33 33 ASN ASN A . n A 1 34 LEU 34 34 34 LEU LEU A . n A 1 35 HIS 35 35 35 HIS HIS A . n A 1 36 TRP 36 36 36 TRP TRP A . n A 1 37 TYR 37 37 37 TYR TYR A . n A 1 38 GLN 38 38 38 GLN GLN A . n A 1 39 GLN 39 39 39 GLN GLN A . n A 1 40 LYS 40 40 40 LYS LYS A . n A 1 41 SER 41 41 41 SER SER A . n A 1 42 GLU 42 42 42 GLU GLU A . n A 1 43 THR 43 43 43 THR THR A . n A 1 44 SER 44 44 44 SER SER A . n A 1 45 PRO 45 45 45 PRO PRO A . n A 1 46 LYS 46 46 46 LYS LYS A . n A 1 47 PRO 47 47 47 PRO PRO A . n A 1 48 TRP 48 48 48 TRP TRP A . n A 1 49 ILE 49 49 49 ILE ILE A . n A 1 50 TYR 50 50 50 TYR TYR A . n A 1 51 GLY 51 51 51 GLY GLY A . n A 1 52 THR 52 52 52 THR THR A . n A 1 53 SER 53 53 53 SER SER A . n A 1 54 ASN 54 54 54 ASN ASN A . n A 1 55 LEU 55 55 55 LEU LEU A . n A 1 56 ALA 56 56 56 ALA ALA A . n A 1 57 SER 57 57 57 SER SER A . n A 1 58 GLY 58 58 58 GLY GLY A . n A 1 59 VAL 59 59 59 VAL VAL A . n A 1 60 PRO 60 60 60 PRO PRO A . n A 1 61 VAL 61 61 61 VAL VAL A . n A 1 62 ARG 62 62 62 ARG ARG A . n A 1 63 PHE 63 63 63 PHE PHE A . n A 1 64 SER 64 64 64 SER SER A . n A 1 65 GLY 65 65 65 GLY GLY A . n A 1 66 SER 66 66 66 SER SER A . n A 1 67 GLY 67 67 67 GLY GLY A . n A 1 68 SER 68 68 68 SER SER A . n A 1 69 GLY 69 69 69 GLY GLY A . n A 1 70 THR 70 70 70 THR THR A . n A 1 71 SER 71 71 71 SER SER A . n A 1 72 TYR 72 72 72 TYR TYR A . n A 1 73 SER 73 73 73 SER SER A . n A 1 74 LEU 74 74 74 LEU LEU A . n A 1 75 THR 75 75 75 THR THR A . n A 1 76 ILE 76 76 76 ILE ILE A . n A 1 77 SER 77 77 77 SER SER A . n A 1 78 SER 78 78 78 SER SER A . n A 1 79 MET 79 79 79 MET MET A . n A 1 80 GLU 80 80 80 GLU GLU A . n A 1 81 ALA 81 81 81 ALA ALA A . n A 1 82 GLU 82 82 82 GLU GLU A . n A 1 83 ASP 83 83 83 ASP ASP A . n A 1 84 ALA 84 84 84 ALA ALA A . n A 1 85 ALA 85 85 85 ALA ALA A . n A 1 86 THR 86 86 86 THR THR A . n A 1 87 TYR 87 87 87 TYR TYR A . n A 1 88 TYR 88 88 88 TYR TYR A . n A 1 89 CYS 89 89 89 CYS CYS A . n A 1 90 GLN 90 90 90 GLN GLN A . n A 1 91 GLN 91 91 91 GLN GLN A . n A 1 92 TRP 92 92 92 TRP TRP A . n A 1 93 ASN 93 93 93 ASN ASN A . n A 1 94 SER 94 94 94 SER SER A . n A 1 95 TYR 95 95 95 TYR TYR A . n A 1 96 PRO 96 96 96 PRO PRO A . n A 1 97 TYR 97 97 97 TYR TYR A . n A 1 98 THR 98 98 98 THR THR A . n A 1 99 PHE 99 99 99 PHE PHE A . n A 1 100 GLY 100 100 100 GLY GLY A . n A 1 101 GLY 101 101 101 GLY GLY A . n A 1 102 GLY 102 102 102 GLY GLY A . n A 1 103 THR 103 103 103 THR THR A . n A 1 104 LYS 104 104 104 LYS LYS A . n A 1 105 LEU 105 105 105 LEU LEU A . n A 1 106 GLU 106 106 106 GLU GLU A . n A 1 107 ILE 107 107 107 ILE ILE A . n A 1 108 LYS 108 108 108 LYS LYS A . n B 2 1 GLU 1 109 109 GLU GLU B . n B 2 2 VAL 2 110 110 VAL VAL B . n B 2 3 LYS 3 111 111 LYS LYS B . n B 2 4 LEU 4 112 112 LEU LEU B . n B 2 5 GLN 5 113 113 GLN GLN B . n B 2 6 GLU 6 114 114 GLU GLU B . n B 2 7 SER 7 115 115 SER SER B . n B 2 8 GLY 8 116 116 GLY GLY B . n B 2 9 GLY 9 117 117 GLY GLY B . n B 2 10 GLY 10 118 118 GLY GLY B . n B 2 11 LEU 11 119 119 LEU LEU B . n B 2 12 VAL 12 120 120 VAL VAL B . n B 2 13 GLN 13 121 121 GLN GLN B . n B 2 14 PRO 14 122 122 PRO PRO B . n B 2 15 GLY 15 123 123 GLY GLY B . n B 2 16 GLY 16 124 124 GLY GLY B . n B 2 17 SER 17 125 125 SER SER B . n B 2 18 MET 18 126 126 MET MET B . n B 2 19 LYS 19 127 127 LYS LYS B . n B 2 20 LEU 20 128 128 LEU LEU B . n B 2 21 SER 21 129 129 SER SER B . n B 2 22 CYS 22 130 130 CYS CYS B . n B 2 23 VAL 23 131 131 VAL VAL B . n B 2 24 ALA 24 132 132 ALA ALA B . n B 2 25 SER 25 133 133 SER SER B . n B 2 26 GLY 26 134 134 GLY GLY B . n B 2 27 PHE 27 135 135 PHE PHE B . n B 2 28 THR 28 136 136 THR THR B . n B 2 29 PHE 29 137 137 PHE PHE B . n B 2 30 ASN 30 138 138 ASN ASN B . n B 2 31 ASN 31 139 139 ASN ASN B . n B 2 32 TYR 32 140 140 TYR TYR B . n B 2 33 TRP 33 141 141 TRP TRP B . n B 2 34 MET 34 142 142 MET MET B . n B 2 35 SER 35 143 143 SER SER B . n B 2 36 TRP 36 144 144 TRP TRP B . n B 2 37 VAL 37 145 145 VAL VAL B . n B 2 38 ARG 38 146 146 ARG ARG B . n B 2 39 GLN 39 147 147 GLN GLN B . n B 2 40 SER 40 148 148 SER SER B . n B 2 41 PRO 41 149 149 PRO PRO B . n B 2 42 GLU 42 150 150 GLU GLU B . n B 2 43 LYS 43 151 151 LYS LYS B . n B 2 44 GLY 44 152 152 GLY GLY B . n B 2 45 LEU 45 153 153 LEU LEU B . n B 2 46 GLU 46 154 154 GLU GLU B . n B 2 47 TRP 47 155 155 TRP TRP B . n B 2 48 VAL 48 156 156 VAL VAL B . n B 2 49 ALA 49 157 157 ALA ALA B . n B 2 50 GLU 50 158 158 GLU GLU B . n B 2 51 ILE 51 159 159 ILE ILE B . n B 2 52 ARG 52 160 160 ARG ARG B . n B 2 53 LEU 53 161 161 LEU LEU B . n B 2 54 ASN 54 162 162 ASN ASN B . n B 2 55 SER 55 163 163 SER SER B . n B 2 56 ASP 56 164 164 ASP ASP B . n B 2 57 ASN 57 165 165 ASN ASN B . n B 2 58 PHE 58 166 166 PHE PHE B . n B 2 59 ALA 59 167 167 ALA ALA B . n B 2 60 THR 60 168 168 THR THR B . n B 2 61 HIS 61 169 169 HIS HIS B . n B 2 62 TYR 62 170 170 TYR TYR B . n B 2 63 ALA 63 171 171 ALA ALA B . n B 2 64 GLU 64 172 172 GLU GLU B . n B 2 65 SER 65 173 173 SER SER B . n B 2 66 VAL 66 174 174 VAL VAL B . n B 2 67 LYS 67 175 175 LYS LYS B . n B 2 68 GLY 68 176 176 GLY GLY B . n B 2 69 LYS 69 177 177 LYS LYS B . n B 2 70 PHE 70 178 178 PHE PHE B . n B 2 71 ILE 71 179 179 ILE ILE B . n B 2 72 ILE 72 180 180 ILE ILE B . n B 2 73 SER 73 181 181 SER SER B . n B 2 74 ARG 74 182 182 ARG ARG B . n B 2 75 ASP 75 183 183 ASP ASP B . n B 2 76 ASP 76 184 184 ASP ASP B . n B 2 77 SER 77 185 185 SER SER B . n B 2 78 LYS 78 186 186 LYS LYS B . n B 2 79 SER 79 187 187 SER SER B . n B 2 80 ARG 80 188 188 ARG ARG B . n B 2 81 LEU 81 189 189 LEU LEU B . n B 2 82 TYR 82 190 190 TYR TYR B . n B 2 83 LEU 83 191 191 LEU LEU B . n B 2 84 GLN 84 192 192 GLN GLN B . n B 2 85 MET 85 193 193 MET MET B . n B 2 86 ASN 86 194 194 ASN ASN B . n B 2 87 SER 87 195 195 SER SER B . n B 2 88 LEU 88 196 196 LEU LEU B . n B 2 89 ARG 89 197 197 ARG ARG B . n B 2 90 ALA 90 198 198 ALA ALA B . n B 2 91 GLU 91 199 199 GLU GLU B . n B 2 92 ASP 92 200 200 ASP ASP B . n B 2 93 THR 93 201 201 THR THR B . n B 2 94 GLY 94 202 202 GLY GLY B . n B 2 95 ILE 95 203 203 ILE ILE B . n B 2 96 TYR 96 204 204 TYR TYR B . n B 2 97 TYR 97 205 205 TYR TYR B . n B 2 98 CYS 98 206 206 CYS CYS B . n B 2 99 VAL 99 207 207 VAL VAL B . n B 2 100 LEU 100 208 208 LEU LEU B . n B 2 101 ARG 101 209 209 ARG ARG B . n B 2 102 PRO 102 210 210 PRO PRO B . n B 2 103 LEU 103 211 211 LEU LEU B . n B 2 104 PHE 104 212 212 PHE PHE B . n B 2 105 TYR 105 213 213 TYR TYR B . n B 2 106 TYR 106 214 214 TYR TYR B . n B 2 107 ALA 107 215 215 ALA ALA B . n B 2 108 VAL 108 216 216 VAL VAL B . n B 2 109 ASP 109 217 217 ASP ASP B . n B 2 110 TYR 110 218 218 TYR TYR B . n B 2 111 TRP 111 219 219 TRP TRP B . n B 2 112 GLY 112 220 220 GLY GLY B . n B 2 113 GLN 113 221 221 GLN GLN B . n B 2 114 GLY 114 222 222 GLY GLY B . n B 2 115 THR 115 223 223 THR THR B . n B 2 116 SER 116 224 224 SER SER B . n B 2 117 VAL 117 225 225 VAL VAL B . n B 2 118 THR 118 226 226 THR THR B . n B 2 119 VAL 119 227 227 VAL VAL B . n B 2 120 SER 120 228 228 SER SER B . n B 2 121 SER 121 229 229 SER SER B . n B 2 122 ALA 122 230 230 ALA ALA B . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2009-05-12 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2018-07-18 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Data collection' # _pdbx_audit_revision_category.ordinal 1 _pdbx_audit_revision_category.revision_ordinal 3 _pdbx_audit_revision_category.data_content_type 'Structure model' _pdbx_audit_revision_category.category em_software # _pdbx_audit_revision_item.ordinal 1 _pdbx_audit_revision_item.revision_ordinal 3 _pdbx_audit_revision_item.data_content_type 'Structure model' _pdbx_audit_revision_item.item '_em_software.image_processing_id' # _em_3d_fitting.id 1 _em_3d_fitting.entry_id 3IY5 _em_3d_fitting.ref_protocol ? _em_3d_fitting.ref_space REAL _em_3d_fitting.overall_b_value ? _em_3d_fitting.target_criteria ? _em_3d_fitting.details ? _em_3d_fitting.method ? # _em_3d_fitting_list.id 1 _em_3d_fitting_list.3d_fitting_id 1 _em_3d_fitting_list.pdb_entry_id 1AIF _em_3d_fitting_list.pdb_chain_id ? # _em_3d_reconstruction.entry_id 3IY5 _em_3d_reconstruction.id 1 _em_3d_reconstruction.resolution_method 'FSC 0.5 CUT-OFF' _em_3d_reconstruction.symmetry_type POINT _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.method 'common lines' _em_3d_reconstruction.resolution 18 _em_3d_reconstruction.num_particles 2084 _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.magnification_calibration ? _em_3d_reconstruction.details ? _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.algorithm ? # _em_buffer.id 1 _em_buffer.specimen_id 1 _em_buffer.name ? _em_buffer.pH 7.5 _em_buffer.details '10mM Tris-HCL' # loop_ _em_entity_assembly.id _em_entity_assembly.name _em_entity_assembly.type _em_entity_assembly.parent_id _em_entity_assembly.synonym _em_entity_assembly.details _em_entity_assembly.oligomeric_details 1 'Fab fragment from MAb 15 interacting with feline panleukopenia virus (FPV)' COMPLEX 0 ? ? ? 2 'feline panleukopenia virus' VIRUS 1 FPV ? ? # _em_image_scans.entry_id 3IY5 _em_image_scans.id 1 _em_image_scans.image_recording_id 1 _em_image_scans.number_digital_images 48 _em_image_scans.scanner_model 'ZEISS SCAI' _em_image_scans.sampling_size 7 _em_image_scans.od_range 0.9 _em_image_scans.quant_bit_size ? _em_image_scans.details ? _em_image_scans.citation_id ? # _em_imaging.entry_id 3IY5 _em_imaging.id 1 _em_imaging.microscope_model 'FEI/PHILIPS CM300FEG/T' _em_imaging.electron_source 'TUNGSTEN HAIRPIN' _em_imaging.specimen_id 1 _em_imaging.specimen_holder_type 'side mounted nitrogen cooled' _em_imaging.specimen_holder_model 'GATAN LIQUID NITROGEN' _em_imaging.accelerating_voltage 300 _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.mode 'BRIGHT FIELD' _em_imaging.nominal_defocus_min 0.4 _em_imaging.nominal_defocus_max 4.8 _em_imaging.tilt_angle_min 0.0 _em_imaging.tilt_angle_max 0.0 _em_imaging.nominal_magnification 45000 _em_imaging.calibrated_magnification 47190 _em_imaging.temperature 93 _em_imaging.recording_temperature_minimum 83 _em_imaging.recording_temperature_maximum 83 _em_imaging.detector_distance 0.0 _em_imaging.date 2004-06-03 _em_imaging.electron_beam_tilt_params ? _em_imaging.astigmatism 'astigmatism was corrected at 100,000 times magnification' _em_imaging.details ? _em_imaging.nominal_cs ? _em_imaging.citation_id ? # _em_virus_entity.id 1 _em_virus_entity.virus_host_category VERTEBRATES _em_virus_entity.entity_assembly_id 1 _em_virus_entity.virus_type VIRION _em_virus_entity.virus_isolate STRAIN _em_virus_entity.empty NO _em_virus_entity.enveloped NO _em_virus_entity.details ? # _em_vitrification.entry_id 3IY5 _em_vitrification.id 1 _em_vitrification.instrument 'HOMEMADE PLUNGER' _em_vitrification.cryogen_name ETHANE _em_vitrification.humidity ? _em_vitrification.temp 120 _em_vitrification.method 'blot before plunging' _em_vitrification.time_resolved_state ? _em_vitrification.details ? _em_vitrification.citation_id ? _em_vitrification.specimen_id 1 # _em_experiment.reconstruction_method 'SINGLE PARTICLE' _em_experiment.entry_id 3IY5 _em_experiment.id 1 _em_experiment.aggregation_state PARTICLE _em_experiment.entity_assembly_id 1 # _em_single_particle_entity.entry_id 3IY5 _em_single_particle_entity.id 1 _em_single_particle_entity.point_symmetry I _em_single_particle_entity.image_processing_id 1 # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 OD1 _pdbx_validate_close_contact.auth_asym_id_1 B _pdbx_validate_close_contact.auth_comp_id_1 ASN _pdbx_validate_close_contact.auth_seq_id_1 139 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 B _pdbx_validate_close_contact.auth_comp_id_2 ASN _pdbx_validate_close_contact.auth_seq_id_2 162 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.16 # _pdbx_validate_rmsd_bond.id 1 _pdbx_validate_rmsd_bond.PDB_model_num 1 _pdbx_validate_rmsd_bond.auth_atom_id_1 CB _pdbx_validate_rmsd_bond.auth_asym_id_1 B _pdbx_validate_rmsd_bond.auth_comp_id_1 GLU _pdbx_validate_rmsd_bond.auth_seq_id_1 172 _pdbx_validate_rmsd_bond.PDB_ins_code_1 ? _pdbx_validate_rmsd_bond.label_alt_id_1 ? _pdbx_validate_rmsd_bond.auth_atom_id_2 CG _pdbx_validate_rmsd_bond.auth_asym_id_2 B _pdbx_validate_rmsd_bond.auth_comp_id_2 GLU _pdbx_validate_rmsd_bond.auth_seq_id_2 172 _pdbx_validate_rmsd_bond.PDB_ins_code_2 ? _pdbx_validate_rmsd_bond.label_alt_id_2 ? _pdbx_validate_rmsd_bond.bond_value 1.642 _pdbx_validate_rmsd_bond.bond_target_value 1.517 _pdbx_validate_rmsd_bond.bond_deviation 0.125 _pdbx_validate_rmsd_bond.bond_standard_deviation 0.019 _pdbx_validate_rmsd_bond.linker_flag N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 CA A LEU 34 ? ? CB A LEU 34 ? ? CG A LEU 34 ? ? 130.67 115.30 15.37 2.30 N 2 1 N B THR 136 ? ? CA B THR 136 ? ? C B THR 136 ? ? 90.55 111.00 -20.45 2.70 N 3 1 CA B LEU 211 ? ? CB B LEU 211 ? ? CG B LEU 211 ? ? 101.24 115.30 -14.06 2.30 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 SER A 28 ? ? -59.07 99.34 2 1 SER A 31 ? ? -27.98 -62.40 3 1 SER A 32 ? ? -68.18 40.83 4 1 ASN A 33 ? ? -159.31 25.43 5 1 SER A 41 ? ? -22.13 136.95 6 1 PRO A 47 ? ? -42.26 108.39 7 1 TRP A 48 ? ? -97.09 -63.21 8 1 SER A 57 ? ? -36.57 103.56 9 1 SER A 68 ? ? -175.40 123.62 10 1 SER A 77 ? ? -47.40 -81.99 11 1 ALA A 84 ? ? -59.67 22.88 12 1 ASN A 93 ? ? -78.95 -70.82 13 1 LYS B 111 ? ? -165.76 98.68 14 1 LYS B 127 ? ? -162.49 81.13 15 1 CYS B 130 ? ? 178.43 140.59 16 1 THR B 136 ? ? -160.35 74.32 17 1 ASN B 138 ? ? -0.79 -64.70 18 1 TYR B 140 ? ? -131.46 -159.75 19 1 VAL B 156 ? ? -86.91 -70.63 20 1 ALA B 157 ? ? -125.41 -164.92 21 1 GLU B 158 ? ? 170.95 113.62 22 1 ASN B 162 ? ? -18.68 -29.54 23 1 SER B 163 ? ? 151.88 -25.84 24 1 ASN B 165 ? ? -36.02 -74.81 25 1 TYR B 170 ? ? -122.03 -158.50 26 1 GLU B 172 ? ? -15.02 -54.10 27 1 VAL B 174 ? ? -158.71 -37.19 28 1 ARG B 182 ? ? -171.63 129.47 29 1 SER B 187 ? ? 78.62 -3.91 30 1 GLU B 199 ? ? -27.74 -46.77 31 1 LEU B 211 ? ? -88.87 47.33 32 1 ALA B 215 ? ? 178.53 -154.10 33 1 THR B 223 ? ? -170.26 143.89 # _pdbx_validate_planes.id 1 _pdbx_validate_planes.PDB_model_num 1 _pdbx_validate_planes.auth_comp_id TYR _pdbx_validate_planes.auth_asym_id B _pdbx_validate_planes.auth_seq_id 140 _pdbx_validate_planes.PDB_ins_code ? _pdbx_validate_planes.label_alt_id ? _pdbx_validate_planes.rmsd 0.074 _pdbx_validate_planes.type 'SIDE CHAIN' # _em_ctf_correction.id 1 _em_ctf_correction.details robem _em_ctf_correction.type . # _em_image_processing.id 1 _em_image_processing.image_recording_id 1 _em_image_processing.details ? # _em_image_recording.avg_electron_dose_per_image 37.70 _em_image_recording.details ? _em_image_recording.id 1 _em_image_recording.film_or_detector_model 'KODAK SO-163 FILM' _em_image_recording.imaging_id 1 _em_image_recording.detector_mode ? _em_image_recording.average_exposure_time ? _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged ? _em_image_recording.num_real_images ? # loop_ _em_software.id _em_software.name _em_software.version _em_software.category _em_software.details _em_software.image_processing_id 1 EM3DR ? RECONSTRUCTION ? 1 2 EMPFT ? RECONSTRUCTION ? 1 # _em_specimen.experiment_id 1 _em_specimen.id 1 _em_specimen.concentration 1 _em_specimen.vitrification_applied YES _em_specimen.staining_applied NO _em_specimen.embedding_applied NO _em_specimen.shadowing_applied NO _em_specimen.details '10mM Tris-HCL' # _em_virus_natural_host.entity_assembly_id 1 _em_virus_natural_host.id 1 _em_virus_natural_host.ncbi_tax_id 9685 _em_virus_natural_host.organism 'Felis catus' _em_virus_natural_host.strain ? # _em_virus_shell.entity_assembly_id 1 _em_virus_shell.id 1 _em_virus_shell.name ? _em_virus_shell.diameter ? _em_virus_shell.triangulation 1 #