data_3IYY # _entry.id 3IYY # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3IYY pdb_00003iyy 10.2210/pdb3iyy/pdb RCSB RCSB160040 ? ? WWPDB D_1000160040 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2010-09-01 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2018-07-18 4 'Structure model' 1 3 2019-12-18 5 'Structure model' 1 4 2024-02-21 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Data collection' 3 4 'Structure model' Other 4 5 'Structure model' 'Data collection' 5 5 'Structure model' 'Database references' 6 5 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' em_image_scans 2 3 'Structure model' em_software 3 4 'Structure model' atom_sites 4 4 'Structure model' cell 5 5 'Structure model' chem_comp_atom 6 5 'Structure model' chem_comp_bond 7 5 'Structure model' database_2 8 5 'Structure model' em_3d_fitting_list 9 5 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_em_software.image_processing_id' 2 4 'Structure model' '_atom_sites.fract_transf_matrix[1][1]' 3 4 'Structure model' '_atom_sites.fract_transf_matrix[2][2]' 4 4 'Structure model' '_atom_sites.fract_transf_matrix[3][3]' 5 4 'Structure model' '_cell.length_a' 6 4 'Structure model' '_cell.length_b' 7 4 'Structure model' '_cell.length_c' 8 5 'Structure model' '_database_2.pdbx_DOI' 9 5 'Structure model' '_database_2.pdbx_database_accession' 10 5 'Structure model' '_em_3d_fitting_list.accession_code' 11 5 'Structure model' '_em_3d_fitting_list.initial_refinement_model_id' 12 5 'Structure model' '_em_3d_fitting_list.source_name' 13 5 'Structure model' '_em_3d_fitting_list.type' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3IYY _pdbx_database_status.recvd_initial_deposition_date 2010-07-23 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.content_type _pdbx_database_related.details PDB 2AW7 unspecified ;Crystal structure of the Escherichia coli 30S ribosome at 3.5 A resolution Chain M: small subunit protein S13 ; PDB 2AWB unspecified ;Crystal structure of the Escherichia coli 50S ribosome at 3.5 A resolution Chain F: large subunit protein L5 ; PDB 2WRJ unspecified 'X-ray structure of the T. thermophilus 70S ribosome (chain 4 was used as template to build homology model of E.coli L31)' EMDB EMD-1363 'associated EM volume' 'Cryo-EM map of EF-G bound Release Complex of E. coli in the presence of Puromycin and GDPNP' # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Shasmal, M.' 1 'Chakraborty, B.' 2 'Sengupta, J.' 3 # _citation.id primary _citation.title 'Intrinsic molecular properties of the protein-protein bridge facilitate ratchet-like motion of the ribosome.' _citation.journal_abbrev Biochem.Biophys.Res.Commun. _citation.journal_volume 399 _citation.page_first 192 _citation.page_last 197 _citation.year 2010 _citation.journal_id_ASTM BBRCA9 _citation.country US _citation.journal_id_ISSN 0006-291X _citation.journal_id_CSD 0146 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 20643101 _citation.pdbx_database_id_DOI 10.1016/j.bbrc.2010.07.053 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Shasmal, M.' 1 ? primary 'Chakraborty, B.' 2 ? primary 'Sengupta, J.' 3 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer nat '50S ribosomal protein L31' 7887.117 1 ? ? ? ? 2 polymer nat '50S ribosomal protein L5' 20333.611 1 ? ? ? ? 3 polymer nat '30S ribosomal protein S13' 13128.467 1 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no MKKDIHPKYEEITASCSCGNVMKIRSTVGHDLNLDVCSKCHPFFTGKQRDVATGGRVDRFNKRFNIPGSK MKKDIHPKYEEITASCSCGNVMKIRSTVGHDLNLDVCSKCHPFFTGKQRDVATGGRVDRFNKRFNIPGSK A ? 2 'polypeptide(L)' no no ;MAKLHDYYKDEVVKKLMTEFNYNSVMQVPRVEKITLNMGVGEAIADKKLLDNAAADLAAISGQKPLITKARKSVAGFKIR QGYPIGCKVTLRGERMWEFFERLITIAVPRIRDFRGLSAKSFDGRGNYSMGVREQIIFPEIDYDKVDRVRGLDITITTTA KSDEEGRALLAAFDFPFRK ; ;MAKLHDYYKDEVVKKLMTEFNYNSVMQVPRVEKITLNMGVGEAIADKKLLDNAAADLAAISGQKPLITKARKSVAGFKIR QGYPIGCKVTLRGERMWEFFERLITIAVPRIRDFRGLSAKSFDGRGNYSMGVREQIIFPEIDYDKVDRVRGLDITITTTA KSDEEGRALLAAFDFPFRK ; F ? 3 'polypeptide(L)' no no ;MARIAGINIPDHKHAVIALTSIYGVGKTRSKAILAAAGIAEDVKISELSEGQIDTLRDEVAKFVVEGDLRREISMSIKRL MDLGCYRGLRHRRGLPVRGQRTKTNARTRKGPRKPIKK ; ;MARIAGINIPDHKHAVIALTSIYGVGKTRSKAILAAAGIAEDVKISELSEGQIDTLRDEVAKFVVEGDLRREISMSIKRL MDLGCYRGLRHRRGLPVRGQRTKTNARTRKGPRKPIKK ; M ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 LYS n 1 3 LYS n 1 4 ASP n 1 5 ILE n 1 6 HIS n 1 7 PRO n 1 8 LYS n 1 9 TYR n 1 10 GLU n 1 11 GLU n 1 12 ILE n 1 13 THR n 1 14 ALA n 1 15 SER n 1 16 CYS n 1 17 SER n 1 18 CYS n 1 19 GLY n 1 20 ASN n 1 21 VAL n 1 22 MET n 1 23 LYS n 1 24 ILE n 1 25 ARG n 1 26 SER n 1 27 THR n 1 28 VAL n 1 29 GLY n 1 30 HIS n 1 31 ASP n 1 32 LEU n 1 33 ASN n 1 34 LEU n 1 35 ASP n 1 36 VAL n 1 37 CYS n 1 38 SER n 1 39 LYS n 1 40 CYS n 1 41 HIS n 1 42 PRO n 1 43 PHE n 1 44 PHE n 1 45 THR n 1 46 GLY n 1 47 LYS n 1 48 GLN n 1 49 ARG n 1 50 ASP n 1 51 VAL n 1 52 ALA n 1 53 THR n 1 54 GLY n 1 55 GLY n 1 56 ARG n 1 57 VAL n 1 58 ASP n 1 59 ARG n 1 60 PHE n 1 61 ASN n 1 62 LYS n 1 63 ARG n 1 64 PHE n 1 65 ASN n 1 66 ILE n 1 67 PRO n 1 68 GLY n 1 69 SER n 1 70 LYS n 2 1 MET n 2 2 ALA n 2 3 LYS n 2 4 LEU n 2 5 HIS n 2 6 ASP n 2 7 TYR n 2 8 TYR n 2 9 LYS n 2 10 ASP n 2 11 GLU n 2 12 VAL n 2 13 VAL n 2 14 LYS n 2 15 LYS n 2 16 LEU n 2 17 MET n 2 18 THR n 2 19 GLU n 2 20 PHE n 2 21 ASN n 2 22 TYR n 2 23 ASN n 2 24 SER n 2 25 VAL n 2 26 MET n 2 27 GLN n 2 28 VAL n 2 29 PRO n 2 30 ARG n 2 31 VAL n 2 32 GLU n 2 33 LYS n 2 34 ILE n 2 35 THR n 2 36 LEU n 2 37 ASN n 2 38 MET n 2 39 GLY n 2 40 VAL n 2 41 GLY n 2 42 GLU n 2 43 ALA n 2 44 ILE n 2 45 ALA n 2 46 ASP n 2 47 LYS n 2 48 LYS n 2 49 LEU n 2 50 LEU n 2 51 ASP n 2 52 ASN n 2 53 ALA n 2 54 ALA n 2 55 ALA n 2 56 ASP n 2 57 LEU n 2 58 ALA n 2 59 ALA n 2 60 ILE n 2 61 SER n 2 62 GLY n 2 63 GLN n 2 64 LYS n 2 65 PRO n 2 66 LEU n 2 67 ILE n 2 68 THR n 2 69 LYS n 2 70 ALA n 2 71 ARG n 2 72 LYS n 2 73 SER n 2 74 VAL n 2 75 ALA n 2 76 GLY n 2 77 PHE n 2 78 LYS n 2 79 ILE n 2 80 ARG n 2 81 GLN n 2 82 GLY n 2 83 TYR n 2 84 PRO n 2 85 ILE n 2 86 GLY n 2 87 CYS n 2 88 LYS n 2 89 VAL n 2 90 THR n 2 91 LEU n 2 92 ARG n 2 93 GLY n 2 94 GLU n 2 95 ARG n 2 96 MET n 2 97 TRP n 2 98 GLU n 2 99 PHE n 2 100 PHE n 2 101 GLU n 2 102 ARG n 2 103 LEU n 2 104 ILE n 2 105 THR n 2 106 ILE n 2 107 ALA n 2 108 VAL n 2 109 PRO n 2 110 ARG n 2 111 ILE n 2 112 ARG n 2 113 ASP n 2 114 PHE n 2 115 ARG n 2 116 GLY n 2 117 LEU n 2 118 SER n 2 119 ALA n 2 120 LYS n 2 121 SER n 2 122 PHE n 2 123 ASP n 2 124 GLY n 2 125 ARG n 2 126 GLY n 2 127 ASN n 2 128 TYR n 2 129 SER n 2 130 MET n 2 131 GLY n 2 132 VAL n 2 133 ARG n 2 134 GLU n 2 135 GLN n 2 136 ILE n 2 137 ILE n 2 138 PHE n 2 139 PRO n 2 140 GLU n 2 141 ILE n 2 142 ASP n 2 143 TYR n 2 144 ASP n 2 145 LYS n 2 146 VAL n 2 147 ASP n 2 148 ARG n 2 149 VAL n 2 150 ARG n 2 151 GLY n 2 152 LEU n 2 153 ASP n 2 154 ILE n 2 155 THR n 2 156 ILE n 2 157 THR n 2 158 THR n 2 159 THR n 2 160 ALA n 2 161 LYS n 2 162 SER n 2 163 ASP n 2 164 GLU n 2 165 GLU n 2 166 GLY n 2 167 ARG n 2 168 ALA n 2 169 LEU n 2 170 LEU n 2 171 ALA n 2 172 ALA n 2 173 PHE n 2 174 ASP n 2 175 PHE n 2 176 PRO n 2 177 PHE n 2 178 ARG n 2 179 LYS n 3 1 MET n 3 2 ALA n 3 3 ARG n 3 4 ILE n 3 5 ALA n 3 6 GLY n 3 7 ILE n 3 8 ASN n 3 9 ILE n 3 10 PRO n 3 11 ASP n 3 12 HIS n 3 13 LYS n 3 14 HIS n 3 15 ALA n 3 16 VAL n 3 17 ILE n 3 18 ALA n 3 19 LEU n 3 20 THR n 3 21 SER n 3 22 ILE n 3 23 TYR n 3 24 GLY n 3 25 VAL n 3 26 GLY n 3 27 LYS n 3 28 THR n 3 29 ARG n 3 30 SER n 3 31 LYS n 3 32 ALA n 3 33 ILE n 3 34 LEU n 3 35 ALA n 3 36 ALA n 3 37 ALA n 3 38 GLY n 3 39 ILE n 3 40 ALA n 3 41 GLU n 3 42 ASP n 3 43 VAL n 3 44 LYS n 3 45 ILE n 3 46 SER n 3 47 GLU n 3 48 LEU n 3 49 SER n 3 50 GLU n 3 51 GLY n 3 52 GLN n 3 53 ILE n 3 54 ASP n 3 55 THR n 3 56 LEU n 3 57 ARG n 3 58 ASP n 3 59 GLU n 3 60 VAL n 3 61 ALA n 3 62 LYS n 3 63 PHE n 3 64 VAL n 3 65 VAL n 3 66 GLU n 3 67 GLY n 3 68 ASP n 3 69 LEU n 3 70 ARG n 3 71 ARG n 3 72 GLU n 3 73 ILE n 3 74 SER n 3 75 MET n 3 76 SER n 3 77 ILE n 3 78 LYS n 3 79 ARG n 3 80 LEU n 3 81 MET n 3 82 ASP n 3 83 LEU n 3 84 GLY n 3 85 CYS n 3 86 TYR n 3 87 ARG n 3 88 GLY n 3 89 LEU n 3 90 ARG n 3 91 HIS n 3 92 ARG n 3 93 ARG n 3 94 GLY n 3 95 LEU n 3 96 PRO n 3 97 VAL n 3 98 ARG n 3 99 GLY n 3 100 GLN n 3 101 ARG n 3 102 THR n 3 103 LYS n 3 104 THR n 3 105 ASN n 3 106 ALA n 3 107 ARG n 3 108 THR n 3 109 ARG n 3 110 LYS n 3 111 GLY n 3 112 PRO n 3 113 ARG n 3 114 LYS n 3 115 PRO n 3 116 ILE n 3 117 LYS n 3 118 LYS n # loop_ _entity_src_nat.entity_id _entity_src_nat.pdbx_src_id _entity_src_nat.pdbx_alt_source_flag _entity_src_nat.pdbx_beg_seq_num _entity_src_nat.pdbx_end_seq_num _entity_src_nat.common_name _entity_src_nat.pdbx_organism_scientific _entity_src_nat.pdbx_ncbi_taxonomy_id _entity_src_nat.genus _entity_src_nat.species _entity_src_nat.strain _entity_src_nat.tissue _entity_src_nat.tissue_fraction _entity_src_nat.pdbx_secretion _entity_src_nat.pdbx_fragment _entity_src_nat.pdbx_variant _entity_src_nat.pdbx_cell_line _entity_src_nat.pdbx_atcc _entity_src_nat.pdbx_cellular_location _entity_src_nat.pdbx_organ _entity_src_nat.pdbx_organelle _entity_src_nat.pdbx_cell _entity_src_nat.pdbx_plasmid_name _entity_src_nat.pdbx_plasmid_details _entity_src_nat.details 1 1 sample ? ? ? 'Escherichia coli' 701177 ? ? MRE600 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 2 1 sample ? ? ? 'Escherichia coli' 701177 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 3 1 sample ? ? ? 'Escherichia coli' 701177 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 1 MET MET A . n A 1 2 LYS 2 2 2 LYS LYS A . n A 1 3 LYS 3 3 3 LYS LYS A . n A 1 4 ASP 4 4 4 ASP ASP A . n A 1 5 ILE 5 5 5 ILE ILE A . n A 1 6 HIS 6 6 6 HIS HIS A . n A 1 7 PRO 7 7 7 PRO PRO A . n A 1 8 LYS 8 8 8 LYS LYS A . n A 1 9 TYR 9 9 9 TYR TYR A . n A 1 10 GLU 10 10 10 GLU GLU A . n A 1 11 GLU 11 11 11 GLU GLU A . n A 1 12 ILE 12 12 12 ILE ILE A . n A 1 13 THR 13 13 13 THR THR A . n A 1 14 ALA 14 14 14 ALA ALA A . n A 1 15 SER 15 15 15 SER SER A . n A 1 16 CYS 16 16 16 CYS CYS A . n A 1 17 SER 17 17 17 SER SER A . n A 1 18 CYS 18 18 18 CYS CYS A . n A 1 19 GLY 19 19 19 GLY GLY A . n A 1 20 ASN 20 20 20 ASN ASN A . n A 1 21 VAL 21 21 21 VAL VAL A . n A 1 22 MET 22 22 22 MET MET A . n A 1 23 LYS 23 23 23 LYS LYS A . n A 1 24 ILE 24 24 24 ILE ILE A . n A 1 25 ARG 25 25 25 ARG ARG A . n A 1 26 SER 26 26 26 SER SER A . n A 1 27 THR 27 27 27 THR THR A . n A 1 28 VAL 28 28 28 VAL VAL A . n A 1 29 GLY 29 29 29 GLY GLY A . n A 1 30 HIS 30 30 30 HIS HIS A . n A 1 31 ASP 31 31 31 ASP ASP A . n A 1 32 LEU 32 32 32 LEU LEU A . n A 1 33 ASN 33 33 33 ASN ASN A . n A 1 34 LEU 34 34 34 LEU LEU A . n A 1 35 ASP 35 35 35 ASP ASP A . n A 1 36 VAL 36 36 36 VAL VAL A . n A 1 37 CYS 37 37 37 CYS CYS A . n A 1 38 SER 38 38 38 SER SER A . n A 1 39 LYS 39 39 39 LYS LYS A . n A 1 40 CYS 40 40 40 CYS CYS A . n A 1 41 HIS 41 41 41 HIS HIS A . n A 1 42 PRO 42 42 42 PRO PRO A . n A 1 43 PHE 43 43 43 PHE PHE A . n A 1 44 PHE 44 44 44 PHE PHE A . n A 1 45 THR 45 45 45 THR THR A . n A 1 46 GLY 46 46 46 GLY GLY A . n A 1 47 LYS 47 47 47 LYS LYS A . n A 1 48 GLN 48 48 48 GLN GLN A . n A 1 49 ARG 49 49 49 ARG ARG A . n A 1 50 ASP 50 50 50 ASP ASP A . n A 1 51 VAL 51 51 51 VAL VAL A . n A 1 52 ALA 52 52 52 ALA ALA A . n A 1 53 THR 53 53 53 THR THR A . n A 1 54 GLY 54 54 54 GLY GLY A . n A 1 55 GLY 55 55 55 GLY GLY A . n A 1 56 ARG 56 56 56 ARG ARG A . n A 1 57 VAL 57 57 57 VAL VAL A . n A 1 58 ASP 58 58 58 ASP ASP A . n A 1 59 ARG 59 59 59 ARG ARG A . n A 1 60 PHE 60 60 60 PHE PHE A . n A 1 61 ASN 61 61 61 ASN ASN A . n A 1 62 LYS 62 62 62 LYS LYS A . n A 1 63 ARG 63 63 63 ARG ARG A . n A 1 64 PHE 64 64 64 PHE PHE A . n A 1 65 ASN 65 65 65 ASN ASN A . n A 1 66 ILE 66 66 66 ILE ILE A . n A 1 67 PRO 67 67 67 PRO PRO A . n A 1 68 GLY 68 68 68 GLY GLY A . n A 1 69 SER 69 69 69 SER SER A . n A 1 70 LYS 70 70 70 LYS LYS A . n B 2 1 MET 1 0 ? ? ? F . n B 2 2 ALA 2 1 1 ALA ALA F . n B 2 3 LYS 3 2 2 LYS LYS F . n B 2 4 LEU 4 3 3 LEU LEU F . n B 2 5 HIS 5 4 4 HIS HIS F . n B 2 6 ASP 6 5 5 ASP ASP F . n B 2 7 TYR 7 6 6 TYR TYR F . n B 2 8 TYR 8 7 7 TYR TYR F . n B 2 9 LYS 9 8 8 LYS LYS F . n B 2 10 ASP 10 9 9 ASP ASP F . n B 2 11 GLU 11 10 10 GLU GLU F . n B 2 12 VAL 12 11 11 VAL VAL F . n B 2 13 VAL 13 12 12 VAL VAL F . n B 2 14 LYS 14 13 13 LYS LYS F . n B 2 15 LYS 15 14 14 LYS LYS F . n B 2 16 LEU 16 15 15 LEU LEU F . n B 2 17 MET 17 16 16 MET MET F . n B 2 18 THR 18 17 17 THR THR F . n B 2 19 GLU 19 18 18 GLU GLU F . n B 2 20 PHE 20 19 19 PHE PHE F . n B 2 21 ASN 21 20 20 ASN ASN F . n B 2 22 TYR 22 21 21 TYR TYR F . n B 2 23 ASN 23 22 22 ASN ASN F . n B 2 24 SER 24 23 23 SER SER F . n B 2 25 VAL 25 24 24 VAL VAL F . n B 2 26 MET 26 25 25 MET MET F . n B 2 27 GLN 27 26 26 GLN GLN F . n B 2 28 VAL 28 27 27 VAL VAL F . n B 2 29 PRO 29 28 28 PRO PRO F . n B 2 30 ARG 30 29 29 ARG ARG F . n B 2 31 VAL 31 30 30 VAL VAL F . n B 2 32 GLU 32 31 31 GLU GLU F . n B 2 33 LYS 33 32 32 LYS LYS F . n B 2 34 ILE 34 33 33 ILE ILE F . n B 2 35 THR 35 34 34 THR THR F . n B 2 36 LEU 36 35 35 LEU LEU F . n B 2 37 ASN 37 36 36 ASN ASN F . n B 2 38 MET 38 37 37 MET MET F . n B 2 39 GLY 39 38 38 GLY GLY F . n B 2 40 VAL 40 39 39 VAL VAL F . n B 2 41 GLY 41 40 40 GLY GLY F . n B 2 42 GLU 42 41 41 GLU GLU F . n B 2 43 ALA 43 42 42 ALA ALA F . n B 2 44 ILE 44 43 43 ILE ILE F . n B 2 45 ALA 45 44 44 ALA ALA F . n B 2 46 ASP 46 45 45 ASP ASP F . n B 2 47 LYS 47 46 46 LYS LYS F . n B 2 48 LYS 48 47 47 LYS LYS F . n B 2 49 LEU 49 48 48 LEU LEU F . n B 2 50 LEU 50 49 49 LEU LEU F . n B 2 51 ASP 51 50 50 ASP ASP F . n B 2 52 ASN 52 51 51 ASN ASN F . n B 2 53 ALA 53 52 52 ALA ALA F . n B 2 54 ALA 54 53 53 ALA ALA F . n B 2 55 ALA 55 54 54 ALA ALA F . n B 2 56 ASP 56 55 55 ASP ASP F . n B 2 57 LEU 57 56 56 LEU LEU F . n B 2 58 ALA 58 57 57 ALA ALA F . n B 2 59 ALA 59 58 58 ALA ALA F . n B 2 60 ILE 60 59 59 ILE ILE F . n B 2 61 SER 61 60 60 SER SER F . n B 2 62 GLY 62 61 61 GLY GLY F . n B 2 63 GLN 63 62 62 GLN GLN F . n B 2 64 LYS 64 63 63 LYS LYS F . n B 2 65 PRO 65 64 64 PRO PRO F . n B 2 66 LEU 66 65 65 LEU LEU F . n B 2 67 ILE 67 66 66 ILE ILE F . n B 2 68 THR 68 67 67 THR THR F . n B 2 69 LYS 69 68 68 LYS LYS F . n B 2 70 ALA 70 69 69 ALA ALA F . n B 2 71 ARG 71 70 70 ARG ARG F . n B 2 72 LYS 72 71 71 LYS LYS F . n B 2 73 SER 73 72 72 SER SER F . n B 2 74 VAL 74 73 73 VAL VAL F . n B 2 75 ALA 75 74 74 ALA ALA F . n B 2 76 GLY 76 75 75 GLY GLY F . n B 2 77 PHE 77 76 76 PHE PHE F . n B 2 78 LYS 78 77 77 LYS LYS F . n B 2 79 ILE 79 78 78 ILE ILE F . n B 2 80 ARG 80 79 79 ARG ARG F . n B 2 81 GLN 81 80 80 GLN GLN F . n B 2 82 GLY 82 81 81 GLY GLY F . n B 2 83 TYR 83 82 82 TYR TYR F . n B 2 84 PRO 84 83 83 PRO PRO F . n B 2 85 ILE 85 84 84 ILE ILE F . n B 2 86 GLY 86 85 85 GLY GLY F . n B 2 87 CYS 87 86 86 CYS CYS F . n B 2 88 LYS 88 87 87 LYS LYS F . n B 2 89 VAL 89 88 88 VAL VAL F . n B 2 90 THR 90 89 89 THR THR F . n B 2 91 LEU 91 90 90 LEU LEU F . n B 2 92 ARG 92 91 91 ARG ARG F . n B 2 93 GLY 93 92 92 GLY GLY F . n B 2 94 GLU 94 93 93 GLU GLU F . n B 2 95 ARG 95 94 94 ARG ARG F . n B 2 96 MET 96 95 95 MET MET F . n B 2 97 TRP 97 96 96 TRP TRP F . n B 2 98 GLU 98 97 97 GLU GLU F . n B 2 99 PHE 99 98 98 PHE PHE F . n B 2 100 PHE 100 99 99 PHE PHE F . n B 2 101 GLU 101 100 100 GLU GLU F . n B 2 102 ARG 102 101 101 ARG ARG F . n B 2 103 LEU 103 102 102 LEU LEU F . n B 2 104 ILE 104 103 103 ILE ILE F . n B 2 105 THR 105 104 104 THR THR F . n B 2 106 ILE 106 105 105 ILE ILE F . n B 2 107 ALA 107 106 106 ALA ALA F . n B 2 108 VAL 108 107 107 VAL VAL F . n B 2 109 PRO 109 108 108 PRO PRO F . n B 2 110 ARG 110 109 109 ARG ARG F . n B 2 111 ILE 111 110 110 ILE ILE F . n B 2 112 ARG 112 111 111 ARG ARG F . n B 2 113 ASP 113 112 112 ASP ASP F . n B 2 114 PHE 114 113 113 PHE PHE F . n B 2 115 ARG 115 114 114 ARG ARG F . n B 2 116 GLY 116 115 115 GLY GLY F . n B 2 117 LEU 117 116 116 LEU LEU F . n B 2 118 SER 118 117 117 SER SER F . n B 2 119 ALA 119 118 118 ALA ALA F . n B 2 120 LYS 120 119 119 LYS LYS F . n B 2 121 SER 121 120 120 SER SER F . n B 2 122 PHE 122 121 121 PHE PHE F . n B 2 123 ASP 123 122 122 ASP ASP F . n B 2 124 GLY 124 123 123 GLY GLY F . n B 2 125 ARG 125 124 124 ARG ARG F . n B 2 126 GLY 126 125 125 GLY GLY F . n B 2 127 ASN 127 126 126 ASN ASN F . n B 2 128 TYR 128 127 127 TYR TYR F . n B 2 129 SER 129 128 128 SER SER F . n B 2 130 MET 130 129 129 MET MET F . n B 2 131 GLY 131 130 130 GLY GLY F . n B 2 132 VAL 132 131 131 VAL VAL F . n B 2 133 ARG 133 132 132 ARG ARG F . n B 2 134 GLU 134 133 133 GLU GLU F . n B 2 135 GLN 135 134 134 GLN GLN F . n B 2 136 ILE 136 135 135 ILE ILE F . n B 2 137 ILE 137 136 136 ILE ILE F . n B 2 138 PHE 138 137 137 PHE PHE F . n B 2 139 PRO 139 138 138 PRO PRO F . n B 2 140 GLU 140 139 139 GLU GLU F . n B 2 141 ILE 141 140 140 ILE ILE F . n B 2 142 ASP 142 141 141 ASP ASP F . n B 2 143 TYR 143 142 142 TYR TYR F . n B 2 144 ASP 144 143 143 ASP ASP F . n B 2 145 LYS 145 144 144 LYS LYS F . n B 2 146 VAL 146 145 145 VAL VAL F . n B 2 147 ASP 147 146 146 ASP ASP F . n B 2 148 ARG 148 147 147 ARG ARG F . n B 2 149 VAL 149 148 148 VAL VAL F . n B 2 150 ARG 150 149 149 ARG ARG F . n B 2 151 GLY 151 150 150 GLY GLY F . n B 2 152 LEU 152 151 151 LEU LEU F . n B 2 153 ASP 153 152 152 ASP ASP F . n B 2 154 ILE 154 153 153 ILE ILE F . n B 2 155 THR 155 154 154 THR THR F . n B 2 156 ILE 156 155 155 ILE ILE F . n B 2 157 THR 157 156 156 THR THR F . n B 2 158 THR 158 157 157 THR THR F . n B 2 159 THR 159 158 158 THR THR F . n B 2 160 ALA 160 159 159 ALA ALA F . n B 2 161 LYS 161 160 160 LYS LYS F . n B 2 162 SER 162 161 161 SER SER F . n B 2 163 ASP 163 162 162 ASP ASP F . n B 2 164 GLU 164 163 163 GLU GLU F . n B 2 165 GLU 165 164 164 GLU GLU F . n B 2 166 GLY 166 165 165 GLY GLY F . n B 2 167 ARG 167 166 166 ARG ARG F . n B 2 168 ALA 168 167 167 ALA ALA F . n B 2 169 LEU 169 168 168 LEU LEU F . n B 2 170 LEU 170 169 169 LEU LEU F . n B 2 171 ALA 171 170 170 ALA ALA F . n B 2 172 ALA 172 171 171 ALA ALA F . n B 2 173 PHE 173 172 172 PHE PHE F . n B 2 174 ASP 174 173 173 ASP ASP F . n B 2 175 PHE 175 174 174 PHE PHE F . n B 2 176 PRO 176 175 175 PRO PRO F . n B 2 177 PHE 177 176 176 PHE PHE F . n B 2 178 ARG 178 177 177 ARG ARG F . n B 2 179 LYS 179 178 178 LYS LYS F . n C 3 1 MET 1 0 ? ? ? M . n C 3 2 ALA 2 1 1 ALA ALA M . n C 3 3 ARG 3 2 2 ARG ARG M . n C 3 4 ILE 4 3 3 ILE ILE M . n C 3 5 ALA 5 4 4 ALA ALA M . n C 3 6 GLY 6 5 5 GLY GLY M . n C 3 7 ILE 7 6 6 ILE ILE M . n C 3 8 ASN 8 7 7 ASN ASN M . n C 3 9 ILE 9 8 8 ILE ILE M . n C 3 10 PRO 10 9 9 PRO PRO M . n C 3 11 ASP 11 10 10 ASP ASP M . n C 3 12 HIS 12 11 11 HIS HIS M . n C 3 13 LYS 13 12 12 LYS LYS M . n C 3 14 HIS 14 13 13 HIS HIS M . n C 3 15 ALA 15 14 14 ALA ALA M . n C 3 16 VAL 16 15 15 VAL VAL M . n C 3 17 ILE 17 16 16 ILE ILE M . n C 3 18 ALA 18 17 17 ALA ALA M . n C 3 19 LEU 19 18 18 LEU LEU M . n C 3 20 THR 20 19 19 THR THR M . n C 3 21 SER 21 20 20 SER SER M . n C 3 22 ILE 22 21 21 ILE ILE M . n C 3 23 TYR 23 22 22 TYR TYR M . n C 3 24 GLY 24 23 23 GLY GLY M . n C 3 25 VAL 25 24 24 VAL VAL M . n C 3 26 GLY 26 25 25 GLY GLY M . n C 3 27 LYS 27 26 26 LYS LYS M . n C 3 28 THR 28 27 27 THR THR M . n C 3 29 ARG 29 28 28 ARG ARG M . n C 3 30 SER 30 29 29 SER SER M . n C 3 31 LYS 31 30 30 LYS LYS M . n C 3 32 ALA 32 31 31 ALA ALA M . n C 3 33 ILE 33 32 32 ILE ILE M . n C 3 34 LEU 34 33 33 LEU LEU M . n C 3 35 ALA 35 34 34 ALA ALA M . n C 3 36 ALA 36 35 35 ALA ALA M . n C 3 37 ALA 37 36 36 ALA ALA M . n C 3 38 GLY 38 37 37 GLY GLY M . n C 3 39 ILE 39 38 38 ILE ILE M . n C 3 40 ALA 40 39 39 ALA ALA M . n C 3 41 GLU 41 40 40 GLU GLU M . n C 3 42 ASP 42 41 41 ASP ASP M . n C 3 43 VAL 43 42 42 VAL VAL M . n C 3 44 LYS 44 43 43 LYS LYS M . n C 3 45 ILE 45 44 44 ILE ILE M . n C 3 46 SER 46 45 45 SER SER M . n C 3 47 GLU 47 46 46 GLU GLU M . n C 3 48 LEU 48 47 47 LEU LEU M . n C 3 49 SER 49 48 48 SER SER M . n C 3 50 GLU 50 49 49 GLU GLU M . n C 3 51 GLY 51 50 50 GLY GLY M . n C 3 52 GLN 52 51 51 GLN GLN M . n C 3 53 ILE 53 52 52 ILE ILE M . n C 3 54 ASP 54 53 53 ASP ASP M . n C 3 55 THR 55 54 54 THR THR M . n C 3 56 LEU 56 55 55 LEU LEU M . n C 3 57 ARG 57 56 56 ARG ARG M . n C 3 58 ASP 58 57 57 ASP ASP M . n C 3 59 GLU 59 58 58 GLU GLU M . n C 3 60 VAL 60 59 59 VAL VAL M . n C 3 61 ALA 61 60 60 ALA ALA M . n C 3 62 LYS 62 61 61 LYS LYS M . n C 3 63 PHE 63 62 62 PHE PHE M . n C 3 64 VAL 64 63 63 VAL VAL M . n C 3 65 VAL 65 64 64 VAL VAL M . n C 3 66 GLU 66 65 65 GLU GLU M . n C 3 67 GLY 67 66 66 GLY GLY M . n C 3 68 ASP 68 67 67 ASP ASP M . n C 3 69 LEU 69 68 68 LEU LEU M . n C 3 70 ARG 70 69 69 ARG ARG M . n C 3 71 ARG 71 70 70 ARG ARG M . n C 3 72 GLU 72 71 71 GLU GLU M . n C 3 73 ILE 73 72 72 ILE ILE M . n C 3 74 SER 74 73 73 SER SER M . n C 3 75 MET 75 74 74 MET MET M . n C 3 76 SER 76 75 75 SER SER M . n C 3 77 ILE 77 76 76 ILE ILE M . n C 3 78 LYS 78 77 77 LYS LYS M . n C 3 79 ARG 79 78 78 ARG ARG M . n C 3 80 LEU 80 79 79 LEU LEU M . n C 3 81 MET 81 80 80 MET MET M . n C 3 82 ASP 82 81 81 ASP ASP M . n C 3 83 LEU 83 82 82 LEU LEU M . n C 3 84 GLY 84 83 83 GLY GLY M . n C 3 85 CYS 85 84 84 CYS CYS M . n C 3 86 TYR 86 85 85 TYR TYR M . n C 3 87 ARG 87 86 86 ARG ARG M . n C 3 88 GLY 88 87 87 GLY GLY M . n C 3 89 LEU 89 88 88 LEU LEU M . n C 3 90 ARG 90 89 89 ARG ARG M . n C 3 91 HIS 91 90 90 HIS HIS M . n C 3 92 ARG 92 91 91 ARG ARG M . n C 3 93 ARG 93 92 92 ARG ARG M . n C 3 94 GLY 94 93 93 GLY GLY M . n C 3 95 LEU 95 94 94 LEU LEU M . n C 3 96 PRO 96 95 95 PRO PRO M . n C 3 97 VAL 97 96 96 VAL VAL M . n C 3 98 ARG 98 97 97 ARG ARG M . n C 3 99 GLY 99 98 98 GLY GLY M . n C 3 100 GLN 100 99 99 GLN GLN M . n C 3 101 ARG 101 100 100 ARG ARG M . n C 3 102 THR 102 101 101 THR THR M . n C 3 103 LYS 103 102 102 LYS LYS M . n C 3 104 THR 104 103 103 THR THR M . n C 3 105 ASN 105 104 104 ASN ASN M . n C 3 106 ALA 106 105 105 ALA ALA M . n C 3 107 ARG 107 106 106 ARG ARG M . n C 3 108 THR 108 107 107 THR THR M . n C 3 109 ARG 109 108 108 ARG ARG M . n C 3 110 LYS 110 109 109 LYS LYS M . n C 3 111 GLY 111 110 110 GLY GLY M . n C 3 112 PRO 112 111 111 PRO PRO M . n C 3 113 ARG 113 112 112 ARG ARG M . n C 3 114 LYS 114 113 113 LYS LYS M . n C 3 115 PRO 115 114 ? ? ? M . n C 3 116 ILE 116 115 ? ? ? M . n C 3 117 LYS 117 116 ? ? ? M . n C 3 118 LYS 118 117 ? ? ? M . n # _cell.entry_id 3IYY _cell.length_a 1.0 _cell.length_b 1.0 _cell.length_c 1.0 _cell.angle_alpha 90.0 _cell.angle_beta 90.0 _cell.angle_gamma 90.0 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _exptl.entry_id 3IYY _exptl.method 'ELECTRON MICROSCOPY' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews ? _exptl_crystal.density_percent_sol ? _exptl_crystal.description ? # _diffrn.id 1 _diffrn.ambient_temp ? _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _refine_hist.pdbx_refine_id 'ELECTRON MICROSCOPY' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 361 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 0 _refine_hist.number_atoms_total 361 _refine_hist.d_res_high . _refine_hist.d_res_low . # _database_PDB_matrix.entry_id 3IYY _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 3IYY _struct.title ;Coordinates of the b1b bridge-forming protein structures fitted into the Cryo-EM map of EFG.GDPNP-bound E.coli 70S ribosome(EMD-1363) ; _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3IYY _struct_keywords.pdbx_keywords 'RIBOSOMAL PROTEIN' _struct_keywords.text 'Ribosomal intersubunit bridges, B1b Bridge, Ratchet-like motion, Ribosomal protein L31, RIBOSOMAL PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP D3QYD6_ECOCB D3QYD6 1 MKKDIHPKYEEITASCSCGNVMKIRSTVGHDLNLDVCSKCHPFFTGKQRDVATGGRVDRFNKRFNIPGSK 1 ? 2 UNP D3QTE7_ECOCB D3QTE7 2 ;MAKLHDYYKDEVVKKLMTEFNYNSVMQVPRVEKITLNMGVGEAIADKKLLDNAAADLAAISGQKPLITKARKSVAGFKIR QGYPIGCKVTLRGERMWEFFERLITIAVPRIRDFRGLSAKSFDGRGNYSMGVREQIIFPEIDYDKVDRVRGLDITITTTA KSDEEGRALLAAFDFPFRK ; 1 ? 3 UNP D3QTD7_ECOCB D3QTD7 3 ;MARIAGINIPDHKHAVIALTSIYGVGKTRSKAILAAAGIAEDVKISELSEGQIDTLRDEVAKFVVEGDLRREISMSIKRL MDLGCYRGLRHRRGLPVRGQRTKTNARTRKGPRKPIKK ; 1 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3IYY A 1 ? 70 ? D3QYD6 1 ? 70 ? 1 70 2 2 3IYY F 1 ? 179 ? D3QTE7 1 ? 179 ? 0 178 3 3 3IYY M 1 ? 118 ? D3QTD7 1 ? 118 ? 0 117 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.details ? # loop_ _em_3d_fitting.id _em_3d_fitting.entry_id _em_3d_fitting.ref_protocol _em_3d_fitting.ref_space _em_3d_fitting.overall_b_value _em_3d_fitting.target_criteria _em_3d_fitting.details _em_3d_fitting.method 1 3IYY ? ? ? ? ? ? 2 3IYY ? ? ? ? ? ? 3 3IYY ? ? ? ? ? ? # loop_ _em_3d_fitting_list.3d_fitting_id _em_3d_fitting_list.id _em_3d_fitting_list.pdb_entry_id _em_3d_fitting_list.pdb_chain_id _em_3d_fitting_list.details _em_3d_fitting_list.initial_refinement_model_id _em_3d_fitting_list.chain_id _em_3d_fitting_list.chain_residue_range _em_3d_fitting_list.pdb_chain_residue_range _em_3d_fitting_list.source_name _em_3d_fitting_list.type _em_3d_fitting_list.accession_code 1 1 2AW7 M ? 1 ? ? ? PDB 'experimental model' 2AW7 2 2 2AWB F ? 2 ? ? ? PDB 'experimental model' 2AWB 3 3 2WRJ 4 '2WRJ CHAIN 4 (TEMPLATE FOR HOMOLOGY MODELLING)' 3 ? ? ? PDB 'experimental model' 2WRJ # _em_3d_reconstruction.entry_id 3IYY _em_3d_reconstruction.id 1 _em_3d_reconstruction.symmetry_type POINT _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.method 'Single Particle' _em_3d_reconstruction.nominal_pixel_size 2.82 _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.resolution 10.9 _em_3d_reconstruction.magnification_calibration ? _em_3d_reconstruction.details ? _em_3d_reconstruction.resolution_method ? _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.num_particles ? _em_3d_reconstruction.algorithm ? # _em_buffer.id 1 _em_buffer.specimen_id 1 _em_buffer.name 'Polymix buffer' _em_buffer.pH ? _em_buffer.details 'Polymix buffer' # _em_entity_assembly.id 1 _em_entity_assembly.name 'E.coli 70S ribosome' _em_entity_assembly.type RIBOSOME _em_entity_assembly.parent_id 0 _em_entity_assembly.synonym ? _em_entity_assembly.details ? _em_entity_assembly.oligomeric_details ? # _em_imaging.entry_id 3IYY _em_imaging.id 1 _em_imaging.date 2003-07-11 _em_imaging.specimen_id 1 _em_imaging.temperature 93 _em_imaging.microscope_model 'FEI TECNAI F20' _em_imaging.nominal_defocus_min 2000 _em_imaging.nominal_defocus_max 4000 _em_imaging.tilt_angle_min 0 _em_imaging.tilt_angle_max 0 _em_imaging.nominal_cs 2.0 _em_imaging.mode 'BRIGHT FIELD' _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.nominal_magnification 50000 _em_imaging.calibrated_magnification 49696 _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.accelerating_voltage 200 _em_imaging.details ? _em_imaging.specimen_holder_type ? _em_imaging.specimen_holder_model ? _em_imaging.citation_id ? _em_imaging.detector_distance ? _em_imaging.recording_temperature_maximum ? _em_imaging.recording_temperature_minimum ? _em_imaging.astigmatism ? _em_imaging.electron_beam_tilt_params ? # _em_sample_support.id 1 _em_sample_support.specimen_id 1 _em_sample_support.details 'Quantifoil holley carbon film grids' _em_sample_support.film_material ? _em_sample_support.grid_material ? _em_sample_support.grid_mesh_size ? _em_sample_support.grid_type ? _em_sample_support.method ? # _em_vitrification.entry_id 3IYY _em_vitrification.id 1 _em_vitrification.cryogen_name ETHANE _em_vitrification.specimen_id 1 _em_vitrification.details 'Rapid-freezing in liquid ethane' _em_vitrification.citation_id ? _em_vitrification.humidity ? _em_vitrification.instrument ? _em_vitrification.method ? _em_vitrification.temp ? _em_vitrification.time_resolved_state ? # _em_experiment.entry_id 3IYY _em_experiment.id 1 _em_experiment.aggregation_state PARTICLE _em_experiment.entity_assembly_id 1 _em_experiment.reconstruction_method 'SINGLE PARTICLE' # _em_single_particle_entity.entry_id 3IYY _em_single_particle_entity.id 1 _em_single_particle_entity.point_symmetry C1 _em_single_particle_entity.image_processing_id 1 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 F MET 0 ? B MET 1 2 1 Y 1 M MET 0 ? C MET 1 3 1 Y 1 M PRO 114 ? C PRO 115 4 1 Y 1 M ILE 115 ? C ILE 116 5 1 Y 1 M LYS 116 ? C LYS 117 6 1 Y 1 M LYS 117 ? C LYS 118 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 GLN N N N N 88 GLN CA C N S 89 GLN C C N N 90 GLN O O N N 91 GLN CB C N N 92 GLN CG C N N 93 GLN CD C N N 94 GLN OE1 O N N 95 GLN NE2 N N N 96 GLN OXT O N N 97 GLN H H N N 98 GLN H2 H N N 99 GLN HA H N N 100 GLN HB2 H N N 101 GLN HB3 H N N 102 GLN HG2 H N N 103 GLN HG3 H N N 104 GLN HE21 H N N 105 GLN HE22 H N N 106 GLN HXT H N N 107 GLU N N N N 108 GLU CA C N S 109 GLU C C N N 110 GLU O O N N 111 GLU CB C N N 112 GLU CG C N N 113 GLU CD C N N 114 GLU OE1 O N N 115 GLU OE2 O N N 116 GLU OXT O N N 117 GLU H H N N 118 GLU H2 H N N 119 GLU HA H N N 120 GLU HB2 H N N 121 GLU HB3 H N N 122 GLU HG2 H N N 123 GLU HG3 H N N 124 GLU HE2 H N N 125 GLU HXT H N N 126 GLY N N N N 127 GLY CA C N N 128 GLY C C N N 129 GLY O O N N 130 GLY OXT O N N 131 GLY H H N N 132 GLY H2 H N N 133 GLY HA2 H N N 134 GLY HA3 H N N 135 GLY HXT H N N 136 HIS N N N N 137 HIS CA C N S 138 HIS C C N N 139 HIS O O N N 140 HIS CB C N N 141 HIS CG C Y N 142 HIS ND1 N Y N 143 HIS CD2 C Y N 144 HIS CE1 C Y N 145 HIS NE2 N Y N 146 HIS OXT O N N 147 HIS H H N N 148 HIS H2 H N N 149 HIS HA H N N 150 HIS HB2 H N N 151 HIS HB3 H N N 152 HIS HD1 H N N 153 HIS HD2 H N N 154 HIS HE1 H N N 155 HIS HE2 H N N 156 HIS HXT H N N 157 ILE N N N N 158 ILE CA C N S 159 ILE C C N N 160 ILE O O N N 161 ILE CB C N S 162 ILE CG1 C N N 163 ILE CG2 C N N 164 ILE CD1 C N N 165 ILE OXT O N N 166 ILE H H N N 167 ILE H2 H N N 168 ILE HA H N N 169 ILE HB H N N 170 ILE HG12 H N N 171 ILE HG13 H N N 172 ILE HG21 H N N 173 ILE HG22 H N N 174 ILE HG23 H N N 175 ILE HD11 H N N 176 ILE HD12 H N N 177 ILE HD13 H N N 178 ILE HXT H N N 179 LEU N N N N 180 LEU CA C N S 181 LEU C C N N 182 LEU O O N N 183 LEU CB C N N 184 LEU CG C N N 185 LEU CD1 C N N 186 LEU CD2 C N N 187 LEU OXT O N N 188 LEU H H N N 189 LEU H2 H N N 190 LEU HA H N N 191 LEU HB2 H N N 192 LEU HB3 H N N 193 LEU HG H N N 194 LEU HD11 H N N 195 LEU HD12 H N N 196 LEU HD13 H N N 197 LEU HD21 H N N 198 LEU HD22 H N N 199 LEU HD23 H N N 200 LEU HXT H N N 201 LYS N N N N 202 LYS CA C N S 203 LYS C C N N 204 LYS O O N N 205 LYS CB C N N 206 LYS CG C N N 207 LYS CD C N N 208 LYS CE C N N 209 LYS NZ N N N 210 LYS OXT O N N 211 LYS H H N N 212 LYS H2 H N N 213 LYS HA H N N 214 LYS HB2 H N N 215 LYS HB3 H N N 216 LYS HG2 H N N 217 LYS HG3 H N N 218 LYS HD2 H N N 219 LYS HD3 H N N 220 LYS HE2 H N N 221 LYS HE3 H N N 222 LYS HZ1 H N N 223 LYS HZ2 H N N 224 LYS HZ3 H N N 225 LYS HXT H N N 226 MET N N N N 227 MET CA C N S 228 MET C C N N 229 MET O O N N 230 MET CB C N N 231 MET CG C N N 232 MET SD S N N 233 MET CE C N N 234 MET OXT O N N 235 MET H H N N 236 MET H2 H N N 237 MET HA H N N 238 MET HB2 H N N 239 MET HB3 H N N 240 MET HG2 H N N 241 MET HG3 H N N 242 MET HE1 H N N 243 MET HE2 H N N 244 MET HE3 H N N 245 MET HXT H N N 246 PHE N N N N 247 PHE CA C N S 248 PHE C C N N 249 PHE O O N N 250 PHE CB C N N 251 PHE CG C Y N 252 PHE CD1 C Y N 253 PHE CD2 C Y N 254 PHE CE1 C Y N 255 PHE CE2 C Y N 256 PHE CZ C Y N 257 PHE OXT O N N 258 PHE H H N N 259 PHE H2 H N N 260 PHE HA H N N 261 PHE HB2 H N N 262 PHE HB3 H N N 263 PHE HD1 H N N 264 PHE HD2 H N N 265 PHE HE1 H N N 266 PHE HE2 H N N 267 PHE HZ H N N 268 PHE HXT H N N 269 PRO N N N N 270 PRO CA C N S 271 PRO C C N N 272 PRO O O N N 273 PRO CB C N N 274 PRO CG C N N 275 PRO CD C N N 276 PRO OXT O N N 277 PRO H H N N 278 PRO HA H N N 279 PRO HB2 H N N 280 PRO HB3 H N N 281 PRO HG2 H N N 282 PRO HG3 H N N 283 PRO HD2 H N N 284 PRO HD3 H N N 285 PRO HXT H N N 286 SER N N N N 287 SER CA C N S 288 SER C C N N 289 SER O O N N 290 SER CB C N N 291 SER OG O N N 292 SER OXT O N N 293 SER H H N N 294 SER H2 H N N 295 SER HA H N N 296 SER HB2 H N N 297 SER HB3 H N N 298 SER HG H N N 299 SER HXT H N N 300 THR N N N N 301 THR CA C N S 302 THR C C N N 303 THR O O N N 304 THR CB C N R 305 THR OG1 O N N 306 THR CG2 C N N 307 THR OXT O N N 308 THR H H N N 309 THR H2 H N N 310 THR HA H N N 311 THR HB H N N 312 THR HG1 H N N 313 THR HG21 H N N 314 THR HG22 H N N 315 THR HG23 H N N 316 THR HXT H N N 317 TRP N N N N 318 TRP CA C N S 319 TRP C C N N 320 TRP O O N N 321 TRP CB C N N 322 TRP CG C Y N 323 TRP CD1 C Y N 324 TRP CD2 C Y N 325 TRP NE1 N Y N 326 TRP CE2 C Y N 327 TRP CE3 C Y N 328 TRP CZ2 C Y N 329 TRP CZ3 C Y N 330 TRP CH2 C Y N 331 TRP OXT O N N 332 TRP H H N N 333 TRP H2 H N N 334 TRP HA H N N 335 TRP HB2 H N N 336 TRP HB3 H N N 337 TRP HD1 H N N 338 TRP HE1 H N N 339 TRP HE3 H N N 340 TRP HZ2 H N N 341 TRP HZ3 H N N 342 TRP HH2 H N N 343 TRP HXT H N N 344 TYR N N N N 345 TYR CA C N S 346 TYR C C N N 347 TYR O O N N 348 TYR CB C N N 349 TYR CG C Y N 350 TYR CD1 C Y N 351 TYR CD2 C Y N 352 TYR CE1 C Y N 353 TYR CE2 C Y N 354 TYR CZ C Y N 355 TYR OH O N N 356 TYR OXT O N N 357 TYR H H N N 358 TYR H2 H N N 359 TYR HA H N N 360 TYR HB2 H N N 361 TYR HB3 H N N 362 TYR HD1 H N N 363 TYR HD2 H N N 364 TYR HE1 H N N 365 TYR HE2 H N N 366 TYR HH H N N 367 TYR HXT H N N 368 VAL N N N N 369 VAL CA C N S 370 VAL C C N N 371 VAL O O N N 372 VAL CB C N N 373 VAL CG1 C N N 374 VAL CG2 C N N 375 VAL OXT O N N 376 VAL H H N N 377 VAL H2 H N N 378 VAL HA H N N 379 VAL HB H N N 380 VAL HG11 H N N 381 VAL HG12 H N N 382 VAL HG13 H N N 383 VAL HG21 H N N 384 VAL HG22 H N N 385 VAL HG23 H N N 386 VAL HXT H N N 387 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLN N CA sing N N 83 GLN N H sing N N 84 GLN N H2 sing N N 85 GLN CA C sing N N 86 GLN CA CB sing N N 87 GLN CA HA sing N N 88 GLN C O doub N N 89 GLN C OXT sing N N 90 GLN CB CG sing N N 91 GLN CB HB2 sing N N 92 GLN CB HB3 sing N N 93 GLN CG CD sing N N 94 GLN CG HG2 sing N N 95 GLN CG HG3 sing N N 96 GLN CD OE1 doub N N 97 GLN CD NE2 sing N N 98 GLN NE2 HE21 sing N N 99 GLN NE2 HE22 sing N N 100 GLN OXT HXT sing N N 101 GLU N CA sing N N 102 GLU N H sing N N 103 GLU N H2 sing N N 104 GLU CA C sing N N 105 GLU CA CB sing N N 106 GLU CA HA sing N N 107 GLU C O doub N N 108 GLU C OXT sing N N 109 GLU CB CG sing N N 110 GLU CB HB2 sing N N 111 GLU CB HB3 sing N N 112 GLU CG CD sing N N 113 GLU CG HG2 sing N N 114 GLU CG HG3 sing N N 115 GLU CD OE1 doub N N 116 GLU CD OE2 sing N N 117 GLU OE2 HE2 sing N N 118 GLU OXT HXT sing N N 119 GLY N CA sing N N 120 GLY N H sing N N 121 GLY N H2 sing N N 122 GLY CA C sing N N 123 GLY CA HA2 sing N N 124 GLY CA HA3 sing N N 125 GLY C O doub N N 126 GLY C OXT sing N N 127 GLY OXT HXT sing N N 128 HIS N CA sing N N 129 HIS N H sing N N 130 HIS N H2 sing N N 131 HIS CA C sing N N 132 HIS CA CB sing N N 133 HIS CA HA sing N N 134 HIS C O doub N N 135 HIS C OXT sing N N 136 HIS CB CG sing N N 137 HIS CB HB2 sing N N 138 HIS CB HB3 sing N N 139 HIS CG ND1 sing Y N 140 HIS CG CD2 doub Y N 141 HIS ND1 CE1 doub Y N 142 HIS ND1 HD1 sing N N 143 HIS CD2 NE2 sing Y N 144 HIS CD2 HD2 sing N N 145 HIS CE1 NE2 sing Y N 146 HIS CE1 HE1 sing N N 147 HIS NE2 HE2 sing N N 148 HIS OXT HXT sing N N 149 ILE N CA sing N N 150 ILE N H sing N N 151 ILE N H2 sing N N 152 ILE CA C sing N N 153 ILE CA CB sing N N 154 ILE CA HA sing N N 155 ILE C O doub N N 156 ILE C OXT sing N N 157 ILE CB CG1 sing N N 158 ILE CB CG2 sing N N 159 ILE CB HB sing N N 160 ILE CG1 CD1 sing N N 161 ILE CG1 HG12 sing N N 162 ILE CG1 HG13 sing N N 163 ILE CG2 HG21 sing N N 164 ILE CG2 HG22 sing N N 165 ILE CG2 HG23 sing N N 166 ILE CD1 HD11 sing N N 167 ILE CD1 HD12 sing N N 168 ILE CD1 HD13 sing N N 169 ILE OXT HXT sing N N 170 LEU N CA sing N N 171 LEU N H sing N N 172 LEU N H2 sing N N 173 LEU CA C sing N N 174 LEU CA CB sing N N 175 LEU CA HA sing N N 176 LEU C O doub N N 177 LEU C OXT sing N N 178 LEU CB CG sing N N 179 LEU CB HB2 sing N N 180 LEU CB HB3 sing N N 181 LEU CG CD1 sing N N 182 LEU CG CD2 sing N N 183 LEU CG HG sing N N 184 LEU CD1 HD11 sing N N 185 LEU CD1 HD12 sing N N 186 LEU CD1 HD13 sing N N 187 LEU CD2 HD21 sing N N 188 LEU CD2 HD22 sing N N 189 LEU CD2 HD23 sing N N 190 LEU OXT HXT sing N N 191 LYS N CA sing N N 192 LYS N H sing N N 193 LYS N H2 sing N N 194 LYS CA C sing N N 195 LYS CA CB sing N N 196 LYS CA HA sing N N 197 LYS C O doub N N 198 LYS C OXT sing N N 199 LYS CB CG sing N N 200 LYS CB HB2 sing N N 201 LYS CB HB3 sing N N 202 LYS CG CD sing N N 203 LYS CG HG2 sing N N 204 LYS CG HG3 sing N N 205 LYS CD CE sing N N 206 LYS CD HD2 sing N N 207 LYS CD HD3 sing N N 208 LYS CE NZ sing N N 209 LYS CE HE2 sing N N 210 LYS CE HE3 sing N N 211 LYS NZ HZ1 sing N N 212 LYS NZ HZ2 sing N N 213 LYS NZ HZ3 sing N N 214 LYS OXT HXT sing N N 215 MET N CA sing N N 216 MET N H sing N N 217 MET N H2 sing N N 218 MET CA C sing N N 219 MET CA CB sing N N 220 MET CA HA sing N N 221 MET C O doub N N 222 MET C OXT sing N N 223 MET CB CG sing N N 224 MET CB HB2 sing N N 225 MET CB HB3 sing N N 226 MET CG SD sing N N 227 MET CG HG2 sing N N 228 MET CG HG3 sing N N 229 MET SD CE sing N N 230 MET CE HE1 sing N N 231 MET CE HE2 sing N N 232 MET CE HE3 sing N N 233 MET OXT HXT sing N N 234 PHE N CA sing N N 235 PHE N H sing N N 236 PHE N H2 sing N N 237 PHE CA C sing N N 238 PHE CA CB sing N N 239 PHE CA HA sing N N 240 PHE C O doub N N 241 PHE C OXT sing N N 242 PHE CB CG sing N N 243 PHE CB HB2 sing N N 244 PHE CB HB3 sing N N 245 PHE CG CD1 doub Y N 246 PHE CG CD2 sing Y N 247 PHE CD1 CE1 sing Y N 248 PHE CD1 HD1 sing N N 249 PHE CD2 CE2 doub Y N 250 PHE CD2 HD2 sing N N 251 PHE CE1 CZ doub Y N 252 PHE CE1 HE1 sing N N 253 PHE CE2 CZ sing Y N 254 PHE CE2 HE2 sing N N 255 PHE CZ HZ sing N N 256 PHE OXT HXT sing N N 257 PRO N CA sing N N 258 PRO N CD sing N N 259 PRO N H sing N N 260 PRO CA C sing N N 261 PRO CA CB sing N N 262 PRO CA HA sing N N 263 PRO C O doub N N 264 PRO C OXT sing N N 265 PRO CB CG sing N N 266 PRO CB HB2 sing N N 267 PRO CB HB3 sing N N 268 PRO CG CD sing N N 269 PRO CG HG2 sing N N 270 PRO CG HG3 sing N N 271 PRO CD HD2 sing N N 272 PRO CD HD3 sing N N 273 PRO OXT HXT sing N N 274 SER N CA sing N N 275 SER N H sing N N 276 SER N H2 sing N N 277 SER CA C sing N N 278 SER CA CB sing N N 279 SER CA HA sing N N 280 SER C O doub N N 281 SER C OXT sing N N 282 SER CB OG sing N N 283 SER CB HB2 sing N N 284 SER CB HB3 sing N N 285 SER OG HG sing N N 286 SER OXT HXT sing N N 287 THR N CA sing N N 288 THR N H sing N N 289 THR N H2 sing N N 290 THR CA C sing N N 291 THR CA CB sing N N 292 THR CA HA sing N N 293 THR C O doub N N 294 THR C OXT sing N N 295 THR CB OG1 sing N N 296 THR CB CG2 sing N N 297 THR CB HB sing N N 298 THR OG1 HG1 sing N N 299 THR CG2 HG21 sing N N 300 THR CG2 HG22 sing N N 301 THR CG2 HG23 sing N N 302 THR OXT HXT sing N N 303 TRP N CA sing N N 304 TRP N H sing N N 305 TRP N H2 sing N N 306 TRP CA C sing N N 307 TRP CA CB sing N N 308 TRP CA HA sing N N 309 TRP C O doub N N 310 TRP C OXT sing N N 311 TRP CB CG sing N N 312 TRP CB HB2 sing N N 313 TRP CB HB3 sing N N 314 TRP CG CD1 doub Y N 315 TRP CG CD2 sing Y N 316 TRP CD1 NE1 sing Y N 317 TRP CD1 HD1 sing N N 318 TRP CD2 CE2 doub Y N 319 TRP CD2 CE3 sing Y N 320 TRP NE1 CE2 sing Y N 321 TRP NE1 HE1 sing N N 322 TRP CE2 CZ2 sing Y N 323 TRP CE3 CZ3 doub Y N 324 TRP CE3 HE3 sing N N 325 TRP CZ2 CH2 doub Y N 326 TRP CZ2 HZ2 sing N N 327 TRP CZ3 CH2 sing Y N 328 TRP CZ3 HZ3 sing N N 329 TRP CH2 HH2 sing N N 330 TRP OXT HXT sing N N 331 TYR N CA sing N N 332 TYR N H sing N N 333 TYR N H2 sing N N 334 TYR CA C sing N N 335 TYR CA CB sing N N 336 TYR CA HA sing N N 337 TYR C O doub N N 338 TYR C OXT sing N N 339 TYR CB CG sing N N 340 TYR CB HB2 sing N N 341 TYR CB HB3 sing N N 342 TYR CG CD1 doub Y N 343 TYR CG CD2 sing Y N 344 TYR CD1 CE1 sing Y N 345 TYR CD1 HD1 sing N N 346 TYR CD2 CE2 doub Y N 347 TYR CD2 HD2 sing N N 348 TYR CE1 CZ doub Y N 349 TYR CE1 HE1 sing N N 350 TYR CE2 CZ sing Y N 351 TYR CE2 HE2 sing N N 352 TYR CZ OH sing N N 353 TYR OH HH sing N N 354 TYR OXT HXT sing N N 355 VAL N CA sing N N 356 VAL N H sing N N 357 VAL N H2 sing N N 358 VAL CA C sing N N 359 VAL CA CB sing N N 360 VAL CA HA sing N N 361 VAL C O doub N N 362 VAL C OXT sing N N 363 VAL CB CG1 sing N N 364 VAL CB CG2 sing N N 365 VAL CB HB sing N N 366 VAL CG1 HG11 sing N N 367 VAL CG1 HG12 sing N N 368 VAL CG1 HG13 sing N N 369 VAL CG2 HG21 sing N N 370 VAL CG2 HG22 sing N N 371 VAL CG2 HG23 sing N N 372 VAL OXT HXT sing N N 373 # _em_ctf_correction.id 1 _em_ctf_correction.details 'CTF correction of 3D maps by Wiener filteration' _em_ctf_correction.type . # _em_image_processing.id 1 _em_image_processing.image_recording_id 1 _em_image_processing.details ? # _em_image_recording.details ? _em_image_recording.id 1 _em_image_recording.avg_electron_dose_per_image 20 _em_image_recording.film_or_detector_model 'KODAK SO-163 FILM' _em_image_recording.imaging_id 1 _em_image_recording.detector_mode ? _em_image_recording.average_exposure_time ? _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged ? _em_image_recording.num_real_images ? # _em_software.id 1 _em_software.name SPIDER _em_software.version ? _em_software.category RECONSTRUCTION _em_software.details ? _em_software.image_processing_id 1 # _em_specimen.experiment_id 1 _em_specimen.id 1 _em_specimen.concentration ? _em_specimen.vitrification_applied YES _em_specimen.staining_applied NO _em_specimen.embedding_applied NO _em_specimen.shadowing_applied NO _em_specimen.details ? # loop_ _pdbx_coordinate_model.asym_id _pdbx_coordinate_model.type A 'CA ATOMS ONLY' B 'CA ATOMS ONLY' C 'CA ATOMS ONLY' # loop_ _pdbx_initial_refinement_model.id _pdbx_initial_refinement_model.type _pdbx_initial_refinement_model.source_name _pdbx_initial_refinement_model.accession_code 1 'experimental model' PDB 2AW7 2 'experimental model' PDB 2AWB 3 'experimental model' PDB 2WRJ # _atom_sites.entry_id 3IYY _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # _atom_type.symbol C # loop_