HEADER RIBOSOME 06-OCT-11 3J0P TITLE CORE OF MAMMALIAN 80S PRE-RIBOSOME IN COMPLEX WITH TRNAS FITTED TO A TITLE 2 10.6A CRYO-EM MAP: ROTATED PRE STATE 1 CAVEAT 3J0P ENTRY CONTAINS SEVERAL PHYSICALLY UNREALISTIC INTERATOMIC CAVEAT 2 3J0P DISTANCES. COMPND MOL_ID: 1; COMPND 2 MOLECULE: 40S RIBOSOMAL RNA FRAGMENT; COMPND 3 CHAIN: a; COMPND 4 MOL_ID: 2; COMPND 5 MOLECULE: 40S RIBOSOMAL RNA FRAGMENT; COMPND 6 CHAIN: c; COMPND 7 MOL_ID: 3; COMPND 8 MOLECULE: 40S RIBOSOMAL RNA FRAGMENT; COMPND 9 CHAIN: d; COMPND 10 MOL_ID: 4; COMPND 11 MOLECULE: 40S RIBOSOMAL RNA FRAGMENT; COMPND 12 CHAIN: g; COMPND 13 MOL_ID: 5; COMPND 14 MOLECULE: 40S RIBOSOMAL RNA FRAGMENT; COMPND 15 CHAIN: G; COMPND 16 MOL_ID: 6; COMPND 17 MOLECULE: 40S RIBOSOMAL RNA FRAGMENT; COMPND 18 CHAIN: f; COMPND 19 MOL_ID: 7; COMPND 20 MOLECULE: 40S RIBOSOMAL RNA FRAGMENT; COMPND 21 CHAIN: h; COMPND 22 MOL_ID: 8; COMPND 23 MOLECULE: RIBOSOMAL PROTEIN S15; COMPND 24 CHAIN: S; COMPND 25 MOL_ID: 9; COMPND 26 MOLECULE: RIBOSOMAL PROTEIN S23; COMPND 27 CHAIN: L; COMPND 28 MOL_ID: 10; COMPND 29 MOLECULE: RIBOSOMAL PROTEIN S30; COMPND 30 CHAIN: X; COMPND 31 MOL_ID: 11; COMPND 32 MOLECULE: 60S RIBOSOMAL RNA FRAGMENT; COMPND 33 CHAIN: 2; COMPND 34 MOL_ID: 12; COMPND 35 MOLECULE: 60S RIBOSOMAL RNA FRAGMENT; COMPND 36 CHAIN: 3; COMPND 37 MOL_ID: 13; COMPND 38 MOLECULE: 60S RIBOSOMAL RNA FRAGMENT; COMPND 39 CHAIN: 7; COMPND 40 MOL_ID: 14; COMPND 41 MOLECULE: RIBOSOMAL PROTEIN L10A; COMPND 42 CHAIN: B; COMPND 43 MOL_ID: 15; COMPND 44 MOLECULE: TRNA; COMPND 45 CHAIN: Y; COMPND 46 MOL_ID: 16; COMPND 47 MOLECULE: MRNA FRAGMENT; COMPND 48 CHAIN: y; COMPND 49 MOL_ID: 17; COMPND 50 MOLECULE: TRNA; COMPND 51 CHAIN: W; COMPND 52 MOL_ID: 18; COMPND 53 MOLECULE: MRNA FRAGMENT; COMPND 54 CHAIN: w SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ORYCTOLAGUS CUNICULUS; SOURCE 3 ORGANISM_COMMON: RABBIT; SOURCE 4 ORGANISM_TAXID: 9986; SOURCE 5 TISSUE: LIVER; SOURCE 6 MOL_ID: 2; SOURCE 7 ORGANISM_SCIENTIFIC: ORYCTOLAGUS CUNICULUS; SOURCE 8 ORGANISM_COMMON: RABBIT; SOURCE 9 ORGANISM_TAXID: 9986; SOURCE 10 TISSUE: LIVER; SOURCE 11 MOL_ID: 3; SOURCE 12 ORGANISM_SCIENTIFIC: ORYCTOLAGUS CUNICULUS; SOURCE 13 ORGANISM_COMMON: RABBIT; SOURCE 14 ORGANISM_TAXID: 9986; SOURCE 15 TISSUE: LIVER; SOURCE 16 MOL_ID: 4; SOURCE 17 ORGANISM_SCIENTIFIC: ORYCTOLAGUS CUNICULUS; SOURCE 18 ORGANISM_COMMON: RABBIT; SOURCE 19 ORGANISM_TAXID: 9986; SOURCE 20 TISSUE: LIVER; SOURCE 21 MOL_ID: 5; SOURCE 22 ORGANISM_SCIENTIFIC: ORYCTOLAGUS CUNICULUS; SOURCE 23 ORGANISM_COMMON: RABBIT; SOURCE 24 ORGANISM_TAXID: 9986; SOURCE 25 TISSUE: LIVER; SOURCE 26 MOL_ID: 6; SOURCE 27 ORGANISM_SCIENTIFIC: ORYCTOLAGUS CUNICULUS; SOURCE 28 ORGANISM_COMMON: RABBIT; SOURCE 29 ORGANISM_TAXID: 9986; SOURCE 30 TISSUE: LIVER; SOURCE 31 MOL_ID: 7; SOURCE 32 ORGANISM_SCIENTIFIC: ORYCTOLAGUS CUNICULUS; SOURCE 33 ORGANISM_COMMON: RABBIT; SOURCE 34 ORGANISM_TAXID: 9986; SOURCE 35 TISSUE: LIVER; SOURCE 36 MOL_ID: 8; SOURCE 37 ORGANISM_SCIENTIFIC: ORYCTOLAGUS CUNICULUS; SOURCE 38 ORGANISM_COMMON: RABBIT; SOURCE 39 ORGANISM_TAXID: 9986; SOURCE 40 TISSUE: LIVER; SOURCE 41 MOL_ID: 9; SOURCE 42 ORGANISM_SCIENTIFIC: ORYCTOLAGUS CUNICULUS; SOURCE 43 ORGANISM_COMMON: RABBIT; SOURCE 44 ORGANISM_TAXID: 9986; SOURCE 45 TISSUE: LIVER; SOURCE 46 MOL_ID: 10; SOURCE 47 ORGANISM_SCIENTIFIC: ORYCTOLAGUS CUNICULUS; SOURCE 48 ORGANISM_COMMON: RABBIT; SOURCE 49 ORGANISM_TAXID: 9986; SOURCE 50 TISSUE: LIVER; SOURCE 51 MOL_ID: 11; SOURCE 52 ORGANISM_SCIENTIFIC: ORYCTOLAGUS CUNICULUS; SOURCE 53 ORGANISM_COMMON: RABBIT; SOURCE 54 ORGANISM_TAXID: 9986; SOURCE 55 TISSUE: LIVER; SOURCE 56 MOL_ID: 12; SOURCE 57 ORGANISM_SCIENTIFIC: ORYCTOLAGUS CUNICULUS; SOURCE 58 ORGANISM_COMMON: RABBIT; SOURCE 59 ORGANISM_TAXID: 9986; SOURCE 60 TISSUE: LIVER; SOURCE 61 MOL_ID: 13; SOURCE 62 ORGANISM_SCIENTIFIC: ORYCTOLAGUS CUNICULUS; SOURCE 63 ORGANISM_COMMON: RABBIT; SOURCE 64 ORGANISM_TAXID: 9986; SOURCE 65 TISSUE: LIVER; SOURCE 66 MOL_ID: 14; SOURCE 67 ORGANISM_SCIENTIFIC: ORYCTOLAGUS CUNICULUS; SOURCE 68 ORGANISM_COMMON: RABBIT; SOURCE 69 ORGANISM_TAXID: 9986; SOURCE 70 TISSUE: LIVER; SOURCE 71 MOL_ID: 15; SOURCE 72 ORGANISM_SCIENTIFIC: ORYCTOLAGUS CUNICULUS; SOURCE 73 ORGANISM_COMMON: RABBIT; SOURCE 74 ORGANISM_TAXID: 9986; SOURCE 75 TISSUE: LIVER; SOURCE 76 MOL_ID: 16; SOURCE 77 ORGANISM_SCIENTIFIC: ORYCTOLAGUS CUNICULUS; SOURCE 78 ORGANISM_COMMON: RABBIT; SOURCE 79 ORGANISM_TAXID: 9986; SOURCE 80 TISSUE: LIVER; SOURCE 81 MOL_ID: 17; SOURCE 82 ORGANISM_SCIENTIFIC: ORYCTOLAGUS CUNICULUS; SOURCE 83 ORGANISM_COMMON: RABBIT; SOURCE 84 ORGANISM_TAXID: 9986; SOURCE 85 TISSUE: LIVER; SOURCE 86 MOL_ID: 18; SOURCE 87 ORGANISM_SCIENTIFIC: ORYCTOLAGUS CUNICULUS; SOURCE 88 ORGANISM_COMMON: RABBIT; SOURCE 89 ORGANISM_TAXID: 9986; SOURCE 90 TISSUE: LIVER KEYWDS MAMMALIA, TRANSLATION, ELONGATION CYCLE, TRNA, RIBOSOME EXPDTA ELECTRON MICROSCOPY AUTHOR T.BUDKEVICH,J.GIESEBRECHT,R.ALTMAN,J.MUNRO,T.MIELKE,K.NIERHAUS, AUTHOR 2 S.BLANCHARD,C.M.SPAHN REVDAT 3 21-FEB-24 3J0P 1 REMARK REVDAT 2 18-JUL-18 3J0P 1 REMARK DBREF REVDAT 1 16-NOV-11 3J0P 0 JRNL AUTH T.BUDKEVICH,J.GIESEBRECHT,R.B.ALTMAN,J.B.MUNRO,T.MIELKE, JRNL AUTH 2 K.H.NIERHAUS,S.C.BLANCHARD,C.M.SPAHN JRNL TITL STRUCTURE AND DYNAMICS OF THE MAMMALIAN RIBOSOMAL JRNL TITL 2 PRETRANSLOCATION COMPLEX. JRNL REF MOL.CELL V. 44 214 2011 JRNL REFN ISSN 1097-2765 JRNL PMID 22017870 JRNL DOI 10.1016/J.MOLCEL.2011.07.040 REMARK 2 REMARK 2 RESOLUTION. 10.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : UCSF CHIMERA, SPIDER REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : 2XZM REMARK 3 REFINEMENT SPACE : REAL REMARK 3 REFINEMENT PROTOCOL : RIGID BODY FIT REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : METHOD--LOCAL RIGID BODY DOCKING REFINEMENT REMARK 3 PROTOCOL--RIGID BODY DOCKING DETAILS--RIGID BODY DOCKING CARRIED REMARK 3 OUT WITH THE CHIMERA SOFTWARE PACKAGE DETAILS--40S REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : 2.520 REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 10.60 REMARK 3 NUMBER OF PARTICLES : 22212 REMARK 3 CTF CORRECTION METHOD : NULL REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: PROJECTION MATCHING REMARK 4 REMARK 4 3J0P COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-OCT-11. REMARK 100 THE DEPOSITION ID IS D_1000160103. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : VITREOUS ICE (CRYO EM) REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : MAMMALIAN 80S-PRE COMPLEX IN REMARK 245 ROTATED 1 STATE REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : NULL REMARK 245 SAMPLE SUPPORT DETAILS : CARBON COATED QUANTIFOIL GRIDS REMARK 245 SAMPLE VITRIFICATION DETAILS : ETHANE / VITROBOT (FEI) FLASH REMARK 245 -FROZEN IN LIQUID ETHANE REMARK 245 SAMPLE BUFFER : POLYAMINE BUFFER REMARK 245 PH : 7.50 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : 17-OCT-06 REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : 77.00 REMARK 245 MICROSCOPE MODEL : FEI POLARA 300 REMARK 245 DETECTOR TYPE : KODAK SO-163 FILM REMARK 245 MINIMUM DEFOCUS (NM) : 2000.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 4000.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : 0.00 REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : 0.00 REMARK 245 NOMINAL CS : 2.00 REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 2000.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : 39000 REMARK 245 CALIBRATED MAGNIFICATION : 65520 REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : LOW DOSE REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: OCTADECAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: a, c, d, g, G, f, h, S, L, X, REMARK 350 AND CHAINS: 2, 3, 7, B, Y, y, W, w REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ILE B 4 CG1 CG2 CD1 REMARK 470 THR B 5 OG1 CG2 REMARK 470 SER B 6 OG REMARK 470 SER B 7 OG REMARK 470 GLN B 8 CG CD OE1 NE2 REMARK 470 VAL B 9 CG1 CG2 REMARK 470 ARG B 10 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 11 CG CD OE1 OE2 REMARK 470 HIS B 12 CG ND1 CD2 CE1 NE2 REMARK 470 VAL B 13 CG1 CG2 REMARK 470 LYS B 14 CG CD CE NZ REMARK 470 GLU B 15 CG CD OE1 OE2 REMARK 470 LEU B 16 CG CD1 CD2 REMARK 470 LEU B 17 CG CD1 CD2 REMARK 470 LYS B 18 CG CD CE NZ REMARK 470 TYR B 19 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 SER B 20 OG REMARK 470 ASN B 21 CG OD1 ND2 REMARK 470 GLU B 22 CG CD OE1 OE2 REMARK 470 THR B 23 OG1 CG2 REMARK 470 LYS B 24 CG CD CE NZ REMARK 470 LYS B 25 CG CD CE NZ REMARK 470 ARG B 26 CG CD NE CZ NH1 NH2 REMARK 470 ASN B 27 CG OD1 ND2 REMARK 470 PHE B 28 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LEU B 29 CG CD1 CD2 REMARK 470 GLU B 30 CG CD OE1 OE2 REMARK 470 THR B 31 OG1 CG2 REMARK 470 VAL B 32 CG1 CG2 REMARK 470 GLU B 33 CG CD OE1 OE2 REMARK 470 LEU B 34 CG CD1 CD2 REMARK 470 GLN B 35 CG CD OE1 NE2 REMARK 470 VAL B 36 CG1 CG2 REMARK 470 LEU B 38 CG CD1 CD2 REMARK 470 LYS B 39 CG CD CE NZ REMARK 470 ASN B 40 CG OD1 ND2 REMARK 470 TYR B 41 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ASP B 42 CG OD1 OD2 REMARK 470 PRO B 43 CG CD REMARK 470 GLN B 44 CG CD OE1 NE2 REMARK 470 ARG B 45 CG CD NE CZ NH1 NH2 REMARK 470 ASP B 46 CG OD1 OD2 REMARK 470 LYS B 47 CG CD CE NZ REMARK 470 ARG B 48 CG CD NE CZ NH1 NH2 REMARK 470 PHE B 49 CG CD1 CD2 CE1 CE2 CZ REMARK 470 SER B 50 OG REMARK 470 SER B 52 OG REMARK 470 LEU B 53 CG CD1 CD2 REMARK 470 LYS B 54 CG CD CE NZ REMARK 470 LEU B 55 CG CD1 CD2 REMARK 470 PRO B 56 CG CD REMARK 470 ASN B 57 CG OD1 ND2 REMARK 470 CYS B 58 SG REMARK 470 PRO B 59 CG CD REMARK 470 ARG B 60 CG CD NE CZ NH1 NH2 REMARK 470 PRO B 61 CG CD REMARK 470 ASN B 62 CG OD1 ND2 REMARK 470 MET B 63 CG SD CE REMARK 470 SER B 64 OG REMARK 470 ILE B 65 CG1 CG2 CD1 REMARK 470 CYS B 66 SG REMARK 470 ILE B 67 CG1 CG2 CD1 REMARK 470 PHE B 68 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ASP B 70 CG OD1 OD2 REMARK 470 PHE B 72 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ASP B 73 CG OD1 OD2 REMARK 470 VAL B 74 CG1 CG2 REMARK 470 ASP B 75 CG OD1 OD2 REMARK 470 ARG B 76 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 78 CG CD CE NZ REMARK 470 SER B 79 OG REMARK 470 CYS B 80 SG REMARK 470 VAL B 82 CG1 CG2 REMARK 470 ASP B 83 CG OD1 OD2 REMARK 470 MET B 85 CG SD CE REMARK 470 SER B 86 OG REMARK 470 VAL B 87 CG1 CG2 REMARK 470 ASP B 88 CG OD1 OD2 REMARK 470 ASP B 89 CG OD1 OD2 REMARK 470 LEU B 90 CG CD1 CD2 REMARK 470 LYS B 91 CG CD CE NZ REMARK 470 LYS B 92 CG CD CE NZ REMARK 470 LEU B 93 CG CD1 CD2 REMARK 470 ASN B 94 CG OD1 ND2 REMARK 470 LYS B 95 CG CD CE NZ REMARK 470 ASN B 96 CG OD1 ND2 REMARK 470 LYS B 97 CG CD CE NZ REMARK 470 LYS B 98 CG CD CE NZ REMARK 470 LEU B 99 CG CD1 CD2 REMARK 470 ILE B 100 CG1 CG2 CD1 REMARK 470 LYS B 101 CG CD CE NZ REMARK 470 LYS B 102 CG CD CE NZ REMARK 470 LEU B 103 CG CD1 CD2 REMARK 470 SER B 104 OG REMARK 470 LYS B 105 CG CD CE NZ REMARK 470 LYS B 106 CG CD CE NZ REMARK 470 TYR B 107 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ASN B 108 CG OD1 ND2 REMARK 470 PHE B 110 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ILE B 111 CG1 CG2 CD1 REMARK 470 SER B 113 OG REMARK 470 GLU B 114 CG CD OE1 OE2 REMARK 470 VAL B 115 CG1 CG2 REMARK 470 LEU B 116 CG CD1 CD2 REMARK 470 ILE B 117 CG1 CG2 CD1 REMARK 470 LYS B 118 CG CD CE NZ REMARK 470 GLN B 119 CG CD OE1 NE2 REMARK 470 VAL B 120 CG1 CG2 REMARK 470 PRO B 121 CG CD REMARK 470 ARG B 122 CG CD NE CZ NH1 NH2 REMARK 470 LEU B 123 CG CD1 CD2 REMARK 470 LEU B 124 CG CD1 CD2 REMARK 470 PRO B 126 CG CD REMARK 470 GLN B 127 CG CD OE1 NE2 REMARK 470 LEU B 128 CG CD1 CD2 REMARK 470 SER B 129 OG REMARK 470 LYS B 130 CG CD CE NZ REMARK 470 LYS B 133 CG CD CE NZ REMARK 470 PHE B 134 CG CD1 CD2 CE1 CE2 CZ REMARK 470 PRO B 135 CG CD REMARK 470 THR B 136 OG1 CG2 REMARK 470 PRO B 137 CG CD REMARK 470 VAL B 138 CG1 CG2 REMARK 470 SER B 139 OG REMARK 470 HIS B 140 CG ND1 CD2 CE1 NE2 REMARK 470 ASN B 141 CG OD1 ND2 REMARK 470 ASP B 142 CG OD1 OD2 REMARK 470 ASP B 143 CG OD1 OD2 REMARK 470 LEU B 144 CG CD1 CD2 REMARK 470 TYR B 145 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS B 147 CG CD CE NZ REMARK 470 VAL B 148 CG1 CG2 REMARK 470 THR B 149 OG1 CG2 REMARK 470 ASP B 150 CG OD1 OD2 REMARK 470 VAL B 151 CG1 CG2 REMARK 470 ARG B 152 CG CD NE CZ NH1 NH2 REMARK 470 SER B 153 OG REMARK 470 THR B 154 OG1 CG2 REMARK 470 ILE B 155 CG1 CG2 CD1 REMARK 470 LYS B 156 CG CD CE NZ REMARK 470 PHE B 157 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLN B 158 CG CD OE1 NE2 REMARK 470 LEU B 159 CG CD1 CD2 REMARK 470 LYS B 160 CG CD CE NZ REMARK 470 LYS B 161 CG CD CE NZ REMARK 470 VAL B 162 CG1 CG2 REMARK 470 LEU B 163 CG CD1 CD2 REMARK 470 CYS B 164 SG REMARK 470 LEU B 165 CG CD1 CD2 REMARK 470 VAL B 167 CG1 CG2 REMARK 470 VAL B 169 CG1 CG2 REMARK 470 ASN B 171 CG OD1 ND2 REMARK 470 VAL B 172 CG1 CG2 REMARK 470 GLU B 173 CG CD OE1 OE2 REMARK 470 MET B 174 CG SD CE REMARK 470 GLU B 175 CG CD OE1 OE2 REMARK 470 GLU B 176 CG CD OE1 OE2 REMARK 470 ASP B 177 CG OD1 OD2 REMARK 470 VAL B 178 CG1 CG2 REMARK 470 LEU B 179 CG CD1 CD2 REMARK 470 VAL B 180 CG1 CG2 REMARK 470 ASN B 181 CG OD1 ND2 REMARK 470 GLN B 182 CG CD OE1 NE2 REMARK 470 ILE B 183 CG1 CG2 CD1 REMARK 470 LEU B 184 CG CD1 CD2 REMARK 470 MET B 185 CG SD CE REMARK 470 SER B 186 OG REMARK 470 VAL B 187 CG1 CG2 REMARK 470 ASN B 188 CG OD1 ND2 REMARK 470 PHE B 189 CG CD1 CD2 CE1 CE2 CZ REMARK 470 PHE B 190 CG CD1 CD2 CE1 CE2 CZ REMARK 470 VAL B 191 CG1 CG2 REMARK 470 SER B 192 OG REMARK 470 LEU B 193 CG CD1 CD2 REMARK 470 LEU B 194 CG CD1 CD2 REMARK 470 LYS B 195 CG CD CE NZ REMARK 470 LYS B 196 CG CD CE NZ REMARK 470 ASN B 197 CG OD1 ND2 REMARK 470 TRP B 198 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP B 198 CZ3 CH2 REMARK 470 GLN B 199 CG CD OE1 NE2 REMARK 470 ASN B 200 CG OD1 ND2 REMARK 470 VAL B 201 CG1 CG2 REMARK 470 SER B 203 OG REMARK 470 LEU B 204 CG CD1 CD2 REMARK 470 VAL B 205 CG1 CG2 REMARK 470 VAL B 206 CG1 CG2 REMARK 470 LYS B 207 CG CD CE NZ REMARK 470 SER B 208 OG REMARK 470 SER B 209 OG REMARK 470 MET B 210 CG SD CE REMARK 470 PRO B 212 CG CD REMARK 470 PHE B 214 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ARG B 215 CG CD NE CZ NH1 NH2 REMARK 470 LEU B 216 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O4' A h 1709 O3' U y 19 0.29 REMARK 500 O5' A 3 2486 C5 C W 56 0.39 REMARK 500 N3 A h 1709 N1 U y 19 0.42 REMARK 500 C4 A 3 2485 C2 A W 57 0.42 REMARK 500 C2 G 3 2477 CA LYS B 102 0.47 REMARK 500 P A 3 2485 C2' A W 57 0.47 REMARK 500 O5' A 3 2485 C1' A W 57 0.49 REMARK 500 OP1 A 3 2484 O3' G W 19 0.49 REMARK 500 O PRO B 121 C2' C W 56 0.51 REMARK 500 C1' A 3 2485 C5 A W 57 0.52 REMARK 500 C4' A 3 2485 C8 A W 57 0.55 REMARK 500 O2 C 3 2479 C MET B 85 0.55 REMARK 500 C1' A h 1709 C3' U y 19 0.58 REMARK 500 O4' G 3 2477 CA LYS B 98 0.64 REMARK 500 C6 G 3 2477 CB LYS B 102 0.64 REMARK 500 C8 G 3 2481 CB LEU B 123 0.65 REMARK 500 N6 A 3 2485 C8 G W 19 0.69 REMARK 500 C2 A h 1709 C2 U y 19 0.76 REMARK 500 C PRO B 121 C2' C W 56 0.76 REMARK 500 N3 G 3 2477 N LYS B 102 0.79 REMARK 500 N2 G 3 2483 C2 C W 56 0.80 REMARK 500 C2 A h 1709 N3 U y 19 0.82 REMARK 500 P A 3 2486 C6 C W 56 0.83 REMARK 500 C2 A 3 2480 CA LEU B 93 0.84 REMARK 500 O4' C 3 2478 C ILE B 100 0.84 REMARK 500 N3 A 3 2480 N LEU B 93 0.84 REMARK 500 N1 A h 1709 N3 U y 19 0.84 REMARK 500 N9 A h 1709 C2' U y 19 0.85 REMARK 500 O6 G 3 2481 O LEU B 123 0.86 REMARK 500 OP1 A 3 2485 C3' A W 57 0.86 REMARK 500 N6 A 3 2485 N7 G W 19 0.87 REMARK 500 C4' C 3 2478 C ILE B 100 0.89 REMARK 500 C4' G 3 2477 N LYS B 98 0.91 REMARK 500 O4 U 3 2482 CB ARG B 122 0.91 REMARK 500 C PRO B 121 O2' C W 56 0.94 REMARK 500 C5 C 3 2478 CB LEU B 99 0.95 REMARK 500 C3' A 3 2485 N7 A W 57 0.97 REMARK 500 O5' A 3 2486 C6 C W 56 0.98 REMARK 500 C4 A 3 2485 N1 A W 57 1.00 REMARK 500 C1' A h 1709 C2' U y 19 1.01 REMARK 500 C4' A 3 2480 CA LEU B 90 1.02 REMARK 500 OP2 A 3 2484 OP1 U W 20 1.03 REMARK 500 N7 G 3 2481 C LEU B 123 1.03 REMARK 500 C2 C 3 2479 O MET B 85 1.04 REMARK 500 N7 A h 1709 O4' U y 20 1.05 REMARK 500 N1 G 3 2477 CB LYS B 102 1.05 REMARK 500 N2 G 3 2483 O2 C W 56 1.05 REMARK 500 O4' G 3 2477 C LYS B 98 1.06 REMARK 500 N3 A h 1709 C2 U y 19 1.06 REMARK 500 C6 C 3 2478 C LEU B 99 1.08 REMARK 500 REMARK 500 THIS ENTRY HAS 451 CLOSE CONTACTS REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 G 22283 C8 G 22283 N9 0.043 REMARK 500 A 72845 C6 A 72845 N1 -0.077 REMARK 500 G W 2 N7 G W 2 C8 -0.079 REMARK 500 C W 3 N3 C W 3 C4 -0.055 REMARK 500 C W 3 C4 C W 3 C5 -0.049 REMARK 500 G W 5 N7 G W 5 C8 -0.038 REMARK 500 G W 7 P G W 7 O5' -0.066 REMARK 500 G W 7 O5' G W 7 C5' -0.061 REMARK 500 U W 8 C2 U W 8 O2 -0.057 REMARK 500 U W 8 C4 U W 8 C5 -0.058 REMARK 500 G W 9 C5 G W 9 N7 -0.051 REMARK 500 G W 10 P G W 10 O5' -0.069 REMARK 500 G W 10 C5' G W 10 C4' -0.045 REMARK 500 G W 10 C5 G W 10 C6 -0.087 REMARK 500 G W 12 N3 G W 12 C4 -0.044 REMARK 500 G W 12 C5 G W 12 N7 -0.039 REMARK 500 G W 12 N7 G W 12 C8 -0.039 REMARK 500 A W 14 C6 A W 14 N1 -0.042 REMARK 500 G W 15 C6 G W 15 N1 -0.054 REMARK 500 C W 16 C5' C W 16 C4' -0.047 REMARK 500 C W 16 N1 C W 16 C6 -0.055 REMARK 500 C W 16 C4 C W 16 C5 0.052 REMARK 500 C W 17 C5' C W 17 C4' -0.052 REMARK 500 C W 17 C2' C W 17 C1' -0.069 REMARK 500 U W 17A C2 U W 17A N3 -0.046 REMARK 500 G W 18 C3' G W 18 C2' -0.071 REMARK 500 G W 18 C4 G W 18 C5 -0.044 REMARK 500 G W 18 N9 G W 18 C4 -0.054 REMARK 500 G W 19 C2 G W 19 N3 -0.056 REMARK 500 U W 20 C5' U W 20 C4' -0.049 REMARK 500 A W 21 C5' A W 21 C4' -0.049 REMARK 500 A W 21 N9 A W 21 C4 -0.049 REMARK 500 G W 22 C4' G W 22 C3' -0.071 REMARK 500 G W 22 C5 G W 22 N7 -0.063 REMARK 500 U W 24 C4 U W 24 O4 -0.074 REMARK 500 C W 25 C2 C W 25 O2 -0.059 REMARK 500 U W 27 C2 U W 27 N3 -0.057 REMARK 500 G W 30 C2' G W 30 C1' -0.092 REMARK 500 G W 30 N3 G W 30 C4 -0.048 REMARK 500 G W 30 C6 G W 30 O6 -0.063 REMARK 500 G W 31 C5' G W 31 C4' -0.054 REMARK 500 G W 31 N7 G W 31 C8 -0.046 REMARK 500 C W 32 C3' C W 32 C2' -0.069 REMARK 500 C W 32 N3 C W 32 C4 -0.046 REMARK 500 U W 33 C5' U W 33 C4' -0.045 REMARK 500 U W 33 C4' U W 33 C3' -0.062 REMARK 500 U W 33 C2 U W 33 N3 -0.053 REMARK 500 C W 34 N1 C W 34 C6 -0.040 REMARK 500 C W 34 C4 C W 34 C5 -0.049 REMARK 500 A W 35 C5 A W 35 N7 -0.044 REMARK 500 REMARK 500 THIS ENTRY HAS 86 BOND DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 C a 559 N1 - C1' - C2' ANGL. DEV. = 8.6 DEGREES REMARK 500 G a 565 N3 - C2 - N2 ANGL. DEV. = 4.5 DEGREES REMARK 500 A a 574 N9 - C1' - C2' ANGL. DEV. = 8.0 DEGREES REMARK 500 A a 588 N9 - C1' - C2' ANGL. DEV. = 8.7 DEGREES REMARK 500 A c 981 N9 - C1' - C2' ANGL. DEV. = 8.8 DEGREES REMARK 500 G g1172 C2' - C3' - O3' ANGL. DEV. = 10.0 DEGREES REMARK 500 G g1172 N9 - C1' - C2' ANGL. DEV. = 9.0 DEGREES REMARK 500 U h1714 N1 - C1' - C2' ANGL. DEV. = 11.4 DEGREES REMARK 500 G 22194 C8 - N9 - C4 ANGL. DEV. = 2.4 DEGREES REMARK 500 C 22195 N3 - C4 - C5 ANGL. DEV. = 4.2 DEGREES REMARK 500 C 22196 C6 - N1 - C2 ANGL. DEV. = -2.4 DEGREES REMARK 500 G 22201 N1 - C6 - O6 ANGL. DEV. = 4.5 DEGREES REMARK 500 G 22218 C5 - C6 - N1 ANGL. DEV. = 3.2 DEGREES REMARK 500 U 22241 C5 - C4 - O4 ANGL. DEV. = 4.4 DEGREES REMARK 500 C 22245 C6 - N1 - C2 ANGL. DEV. = -3.9 DEGREES REMARK 500 G 22247 C4 - C5 - N7 ANGL. DEV. = 3.3 DEGREES REMARK 500 G 22247 C6 - C5 - N7 ANGL. DEV. = -4.5 DEGREES REMARK 500 G 22247 N1 - C6 - O6 ANGL. DEV. = 4.2 DEGREES REMARK 500 G 22247 C5 - C6 - O6 ANGL. DEV. = -5.2 DEGREES REMARK 500 C 22248 C6 - N1 - C2 ANGL. DEV. = 2.5 DEGREES REMARK 500 C 22248 N1 - C2 - O2 ANGL. DEV. = -4.1 DEGREES REMARK 500 C 22267 N1 - C2 - O2 ANGL. DEV. = -4.3 DEGREES REMARK 500 C 22277 C6 - N1 - C2 ANGL. DEV. = 2.6 DEGREES REMARK 500 C 22277 C2 - N3 - C4 ANGL. DEV. = -3.8 DEGREES REMARK 500 C 22277 C5 - C6 - N1 ANGL. DEV. = -4.5 DEGREES REMARK 500 C 22277 N1 - C2 - O2 ANGL. DEV. = -4.1 DEGREES REMARK 500 C 22278 N1 - C2 - N3 ANGL. DEV. = -4.6 DEGREES REMARK 500 C 22278 C2 - N3 - C4 ANGL. DEV. = 3.0 DEGREES REMARK 500 C 22278 N1 - C2 - O2 ANGL. DEV. = 5.7 DEGREES REMARK 500 C 22278 C6 - N1 - C1' ANGL. DEV. = -7.4 DEGREES REMARK 500 C 22278 C2 - N1 - C1' ANGL. DEV. = 6.8 DEGREES REMARK 500 A 22280 C8 - N9 - C4 ANGL. DEV. = -2.5 DEGREES REMARK 500 G 22283 C5 - N7 - C8 ANGL. DEV. = -3.0 DEGREES REMARK 500 G 22283 N7 - C8 - N9 ANGL. DEV. = 3.4 DEGREES REMARK 500 G 22283 C8 - N9 - C4 ANGL. DEV. = -3.9 DEGREES REMARK 500 G 22283 N3 - C4 - N9 ANGL. DEV. = -4.5 DEGREES REMARK 500 G 22283 N3 - C2 - N2 ANGL. DEV. = -5.9 DEGREES REMARK 500 G 22283 N1 - C6 - O6 ANGL. DEV. = 4.7 DEGREES REMARK 500 U 22289 C2 - N3 - C4 ANGL. DEV. = -6.0 DEGREES REMARK 500 U 22289 N3 - C4 - C5 ANGL. DEV. = 3.9 DEGREES REMARK 500 U 22289 C5 - C6 - N1 ANGL. DEV. = -3.0 DEGREES REMARK 500 C 22290 N1 - C2 - O2 ANGL. DEV. = -4.7 DEGREES REMARK 500 G 22302 C6 - C5 - N7 ANGL. DEV. = 4.3 DEGREES REMARK 500 G 22302 N1 - C6 - O6 ANGL. DEV. = -5.2 DEGREES REMARK 500 A 22303 C8 - N9 - C4 ANGL. DEV. = 3.3 DEGREES REMARK 500 C 22304 C6 - N1 - C2 ANGL. DEV. = -2.7 DEGREES REMARK 500 G 72824 C6 - N1 - C2 ANGL. DEV. = 4.1 DEGREES REMARK 500 G 72828 N1 - C6 - O6 ANGL. DEV. = 5.1 DEGREES REMARK 500 G 72828 C5 - C6 - O6 ANGL. DEV. = -5.0 DEGREES REMARK 500 G 72830 C5 - C6 - N1 ANGL. DEV. = -3.4 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 160 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE S 13 -169.50 -123.11 REMARK 500 ASN S 29 73.12 -113.08 REMARK 500 SER S 30 48.20 -78.26 REMARK 500 GLU S 31 -101.55 -72.82 REMARK 500 LEU S 33 -39.58 -24.06 REMARK 500 ARG S 52 -76.22 -93.50 REMARK 500 TYR S 58 -9.83 -56.49 REMARK 500 GLU S 70 -63.13 -92.28 REMARK 500 ALA S 74 8.71 -64.21 REMARK 500 GLU S 76 44.97 34.75 REMARK 500 LYS S 77 78.70 -118.51 REMARK 500 TYR S 85 52.11 -67.14 REMARK 500 LYS S 105 -65.40 -96.74 REMARK 500 GLU S 123 -1.07 -55.63 REMARK 500 PRO S 130 -178.94 -50.24 REMARK 500 VAL L 3 -169.60 -100.18 REMARK 500 ARG L 7 49.36 -104.98 REMARK 500 ALA L 11 59.14 -104.35 REMARK 500 LEU L 34 55.58 -100.48 REMARK 500 ALA L 45 159.20 -30.82 REMARK 500 GLU L 54 146.51 162.71 REMARK 500 GLN L 62 -105.13 -1.70 REMARK 500 ARG L 76 -84.72 -61.53 REMARK 500 SER L 79 60.64 73.12 REMARK 500 PRO L 87 -144.69 -52.54 REMARK 500 MET L 88 168.77 -21.76 REMARK 500 ASP L 89 -102.72 -23.24 REMARK 500 CYS L 91 -64.94 -20.37 REMARK 500 ASN L 98 -2.89 90.98 REMARK 500 ARG L 108 116.33 41.18 REMARK 500 GLN L 109 97.90 -51.67 REMARK 500 PRO L 117 -82.30 -91.12 REMARK 500 LYS L 138 5.42 -57.36 REMARK 500 LYS L 139 -76.07 -100.98 REMARK 500 LYS L 141 144.14 -172.34 REMARK 500 LEU X 8 -68.96 166.43 REMARK 500 LYS X 24 95.78 -54.22 REMARK 500 ASP X 25 102.05 -47.54 REMARK 500 LYS X 26 111.99 -13.51 REMARK 500 ARG X 28 -96.06 -116.63 REMARK 500 ARG X 44 -50.55 -129.92 REMARK 500 ASP X 53 142.18 -31.01 REMARK 500 PRO X 60 11.57 -52.67 REMARK 500 ASN X 61 23.39 -156.87 REMARK 500 HIS X 63 46.44 -78.60 REMARK 500 ALA X 64 1.98 -45.52 REMARK 500 THR B 5 64.61 23.14 REMARK 500 GLN B 8 -2.10 -59.66 REMARK 500 VAL B 13 -76.85 -107.34 REMARK 500 LEU B 16 76.53 -113.84 REMARK 500 REMARK 500 THIS ENTRY HAS 161 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 C a 547 0.07 SIDE CHAIN REMARK 500 C a 559 0.07 SIDE CHAIN REMARK 500 A a 574 0.07 SIDE CHAIN REMARK 500 A d1545 0.06 SIDE CHAIN REMARK 500 U g1157 0.06 SIDE CHAIN REMARK 500 U g1158 0.11 SIDE CHAIN REMARK 500 G h1610 0.07 SIDE CHAIN REMARK 500 U h1714 0.14 SIDE CHAIN REMARK 500 G W 4 0.05 SIDE CHAIN REMARK 500 U W 8 0.08 SIDE CHAIN REMARK 500 G W 15 0.06 SIDE CHAIN REMARK 500 G W 29 0.07 SIDE CHAIN REMARK 500 U W 33 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-5328 RELATED DB: EMDB REMARK 900 10.6A CRYO-EM MAP OF THE MAMMALIAN 80S-PRE COMPLEX IN ROTATED STATE REMARK 900 1 REMARK 900 RELATED ID: 3J0L RELATED DB: PDB REMARK 900 80S PRE-RIBOSOME CLASSIC PRE STATE 1 REMARK 900 RELATED ID: 3J0O RELATED DB: PDB REMARK 900 80S PRE-RIBOSOME CLASSIC PRE STATE 2 REMARK 900 RELATED ID: 3J0Q RELATED DB: PDB REMARK 900 80S PRE-RIBOSOME ROTATED PRE STATE 2 REMARK 999 REMARK 999 SEQUENCE REMARK 999 ENTRY HAS BEEN MODELED WITH 60S RIBOSOMAL RNA AND PROTEINS FROM REMARK 999 SACCHAROMYCES CEREVISIAE, 40S RIBOSOMAL RNA AND PROTEINS FROM REMARK 999 TETRAHYMENA THERMOPHILA, A-TRNA FROM THERMUS THERMOPHILUS, AND P/E- REMARK 999 TRNA DERIVED FROM PDB ENTRY 2XSY (THERMUS THERMOPHILUS). DBREF 3J0P a 541 588 PDB 3J0P 3J0P 541 588 DBREF 3J0P c 972 988 PDB 3J0P 3J0P 972 988 DBREF 3J0P d 1543 1549 PDB 3J0P 3J0P 1543 1549 DBREF 3J0P g 1142 1172 PDB 3J0P 3J0P 1142 1172 DBREF 3J0P G 1429 1441 PDB 3J0P 3J0P 1429 1441 DBREF 3J0P f 1236 1256 PDB 3J0P 3J0P 1236 1256 DBREF 3J0P h 1606 1716 PDB 3J0P 3J0P 1606 1716 DBREF 3J0P S 11 135 PDB 3J0P 3J0P 11 135 DBREF 3J0P L 2 142 PDB 3J0P 3J0P 2 142 DBREF 3J0P X 7 74 PDB 3J0P 3J0P 7 74 DBREF 3J0P 2 2194 2305 PDB 3J0P 3J0P 2194 2305 DBREF 3J0P 3 2477 2488 PDB 3J0P 3J0P 2477 2488 DBREF 3J0P 7 2824 2873 PDB 3J0P 3J0P 2824 2873 DBREF 3J0P B 4 216 PDB 3J0P 3J0P 4 216 DBREF 3J0P Y 1 75 PDB 3J0P 3J0P 1 75 DBREF 3J0P y 19 21 PDB 3J0P 3J0P 19 21 DBREF 3J0P W 1 76 PDB 3J0P 3J0P 1 76 DBREF 3J0P w 14 15 PDB 3J0P 3J0P 14 15 SEQRES 1 a 48 G G A G G G C A A G U C A SEQRES 2 a 48 U G G U G C C A G C A G C SEQRES 3 a 48 C G C G G U A A U U C C A SEQRES 4 a 48 G C U C C A A U A SEQRES 1 c 17 G A C G A U C A G A U A C SEQRES 2 c 17 C G U C SEQRES 1 d 7 C G A G G A A SEQRES 1 g 31 G A A C C U G C G G C U U SEQRES 2 g 31 A A U U U G A C U C A A C SEQRES 3 g 31 A C G G G SEQRES 1 G 13 G C A C G C G C G U U A C SEQRES 1 f 21 G G U G G U G G U G C A U SEQRES 2 f 21 G G C C G U U C SEQRES 1 h 111 C A C C G C C C G U C G C SEQRES 2 h 111 U U G U A G U A A C G A A SEQRES 3 h 111 U G G U C U G G U G A A C SEQRES 4 h 111 C U U C U G G A C U G C G SEQRES 5 h 111 A C A G C A A U G U U G C SEQRES 6 h 111 G G A A A A A U A A G U A SEQRES 7 h 111 A A C C C U A C C A U U U SEQRES 8 h 111 G G A A C A A C A A G A A SEQRES 9 h 111 G U C G U A A SEQRES 1 S 125 PHE THR PHE ARG GLY LYS GLY LEU GLU GLU LEU THR ALA SEQRES 2 S 125 LEU ALA SER GLY SER ASN SER GLU LYS LEU ILE SER ASP SEQRES 3 S 125 GLU LEU ALA ALA LEU PHE ASP ALA LYS THR ARG ARG ARG SEQRES 4 S 125 VAL LYS ARG GLY ILE SER GLU LYS TYR ALA LYS PHE VAL SEQRES 5 S 125 ASN LYS VAL ARG ARG SER LYS GLU LYS CYS PRO ALA GLY SEQRES 6 S 125 GLU LYS PRO VAL PRO VAL LYS THR HIS TYR ARG SER MET SEQRES 7 S 125 ILE VAL ILE PRO GLU LEU VAL GLY GLY ILE VAL GLY VAL SEQRES 8 S 125 TYR ASN GLY LYS GLU PHE VAL ASN VAL GLU VAL LYS PHE SEQRES 9 S 125 ASP MET ILE GLY LYS TYR LEU ALA GLU PHE ALA MET THR SEQRES 10 S 125 TYR LYS PRO THR THR HIS GLY LYS SEQRES 1 L 141 GLY VAL GLY LYS PRO ARG GLY ILE ARG ALA GLY ARG LYS SEQRES 2 L 141 LEU ALA ARG HIS ARG LYS ASP GLN ARG TRP ALA ASP ASN SEQRES 3 L 141 ASP PHE ASN LYS ARG LEU LEU GLY SER ARG TRP ARG ASN SEQRES 4 L 141 PRO PHE MET GLY ALA SER HIS ALA LYS GLY LEU VAL THR SEQRES 5 L 141 GLU LYS ILE GLY ILE GLU SER LYS GLN PRO ASN SER ALA SEQRES 6 L 141 VAL ARG LYS CYS VAL ARG VAL LEU LEU ARG LYS ASN SER SEQRES 7 L 141 LYS LYS ILE ALA ALA PHE VAL PRO MET ASP GLY CYS LEU SEQRES 8 L 141 ASN PHE LEU ALA GLU ASN ASP GLU VAL LEU VAL ALA GLY SEQRES 9 L 141 LEU GLY ARG GLN GLY HIS ALA VAL GLY ASP ILE PRO GLY SEQRES 10 L 141 VAL ARG PHE LYS VAL VAL CYS VAL LYS GLY ILE SER LEU SEQRES 11 L 141 LEU ALA LEU PHE LYS GLY LYS LYS GLU LYS ARG SEQRES 1 X 68 THR LEU ALA LYS ALA GLY LYS VAL ARG LYS GLN THR PRO SEQRES 2 X 68 LYS VAL GLU LYS LYS ASP LYS PRO ARG LYS THR PRO LYS SEQRES 3 X 68 GLY ARG SER TYR LYS ARG ILE LEU TYR ASN ARG ARG TYR SEQRES 4 X 68 ALA PRO HIS ILE LEU ALA THR ASP PRO LYS LYS ARG LYS SEQRES 5 X 68 SER PRO ASN TRP HIS ALA GLY LYS LYS GLU LYS MET ASP SEQRES 6 X 68 ALA ALA ALA SEQRES 1 2 112 G C C C A G U G C U C U G SEQRES 2 2 112 A A U G U C A A A G U G A SEQRES 3 2 112 A G A A A U U C A A C C A SEQRES 4 2 112 A G C G C G G G U A A A C SEQRES 5 2 112 G G C G G G A G U A A C U SEQRES 6 2 112 A U G A C U C U C U U A A SEQRES 7 2 112 G G U A G C C A A A U G C SEQRES 8 2 112 C U C G U C A U C U A A U SEQRES 9 2 112 U A G U G A C G SEQRES 1 3 12 G C C A G U G A A A U A SEQRES 1 7 50 G C U U G U G G C A G U C SEQRES 2 7 50 A A G C G U U C A U A G C SEQRES 3 7 50 G A C A U U G C U U U U U SEQRES 4 7 50 G A U U C U U C G A U SEQRES 1 B 213 ILE THR SER SER GLN VAL ARG GLU HIS VAL LYS GLU LEU SEQRES 2 B 213 LEU LYS TYR SER ASN GLU THR LYS LYS ARG ASN PHE LEU SEQRES 3 B 213 GLU THR VAL GLU LEU GLN VAL GLY LEU LYS ASN TYR ASP SEQRES 4 B 213 PRO GLN ARG ASP LYS ARG PHE SER GLY SER LEU LYS LEU SEQRES 5 B 213 PRO ASN CYS PRO ARG PRO ASN MET SER ILE CYS ILE PHE SEQRES 6 B 213 GLY ASP ALA PHE ASP VAL ASP ARG ALA LYS SER CYS GLY SEQRES 7 B 213 VAL ASP ALA MET SER VAL ASP ASP LEU LYS LYS LEU ASN SEQRES 8 B 213 LYS ASN LYS LYS LEU ILE LYS LYS LEU SER LYS LYS TYR SEQRES 9 B 213 ASN ALA PHE ILE ALA SER GLU VAL LEU ILE LYS GLN VAL SEQRES 10 B 213 PRO ARG LEU LEU GLY PRO GLN LEU SER LYS ALA GLY LYS SEQRES 11 B 213 PHE PRO THR PRO VAL SER HIS ASN ASP ASP LEU TYR GLY SEQRES 12 B 213 LYS VAL THR ASP VAL ARG SER THR ILE LYS PHE GLN LEU SEQRES 13 B 213 LYS LYS VAL LEU CYS LEU ALA VAL ALA VAL GLY ASN VAL SEQRES 14 B 213 GLU MET GLU GLU ASP VAL LEU VAL ASN GLN ILE LEU MET SEQRES 15 B 213 SER VAL ASN PHE PHE VAL SER LEU LEU LYS LYS ASN TRP SEQRES 16 B 213 GLN ASN VAL GLY SER LEU VAL VAL LYS SER SER MET GLY SEQRES 17 B 213 PRO ALA PHE ARG LEU SEQRES 1 Y 75 G C C C G G A U A G C U C SEQRES 2 Y 75 A G U C G G U A G A G C A SEQRES 3 Y 75 G G G G A U U G A A A A U SEQRES 4 Y 75 C C C C G U G U C C U U G SEQRES 5 Y 75 G U U C G A U U C C G A G SEQRES 6 Y 75 U C C G G G C A C C SEQRES 1 y 3 U U C SEQRES 1 W 77 C G C G G G G U G G A G C SEQRES 2 W 77 A G C C U G G U A G C U C SEQRES 3 W 77 G U C G G G C U C A U A A SEQRES 4 W 77 C C C G A A G G U C G U C SEQRES 5 W 77 G G U U C A A A U C C G G SEQRES 6 W 77 C C C C C G C A A C C A SEQRES 1 w 2 A A HELIX 1 1 GLY S 17 SER S 26 1 10 HELIX 2 2 SER S 35 PHE S 42 1 8 HELIX 3 3 ASP S 43 ILE S 54 1 12 HELIX 4 4 GLU S 56 CYS S 72 1 17 HELIX 5 5 ILE S 91 VAL S 95 5 5 HELIX 6 6 LYS S 113 ILE S 117 5 5 HELIX 7 7 TYR S 120 ALA S 125 5 6 HELIX 8 8 ALA L 11 ARG L 23 1 13 HELIX 9 9 ASP L 26 LEU L 34 1 9 HELIX 10 10 GLY L 35 ASN L 40 5 6 HELIX 11 11 GLY L 90 PHE L 94 5 5 HELIX 12 12 SER L 130 LYS L 136 1 7 HELIX 13 13 GLY X 12 THR X 18 1 7 HELIX 14 14 GLY X 33 TYR X 45 1 13 HELIX 15 15 LYS X 66 ALA X 74 1 9 HELIX 16 16 GLN B 8 VAL B 13 1 6 HELIX 17 17 VAL B 74 LYS B 78 5 5 HELIX 18 18 LYS B 98 LYS B 105 1 8 HELIX 19 19 LEU B 128 LYS B 133 1 6 HELIX 20 20 GLY B 146 VAL B 151 5 6 HELIX 21 21 GLU B 176 SER B 186 1 11 SHEET 1 A 3 VAL S 81 THR S 83 0 SHEET 2 A 3 ILE S 98 TYR S 102 1 O GLY S 100 N VAL S 81 SHEET 3 A 3 PHE S 107 GLU S 111 -1 O VAL S 108 N VAL S 101 SHEET 1 B 6 HIS L 47 GLU L 59 0 SHEET 2 B 6 VAL L 67 LEU L 75 -1 O ARG L 68 N ILE L 58 SHEET 3 B 6 LYS L 81 PHE L 85 -1 O ALA L 84 N VAL L 71 SHEET 4 B 6 PHE L 121 VAL L 126 1 O PHE L 121 N PHE L 85 SHEET 5 B 6 GLU L 100 GLY L 105 -1 N ALA L 104 O LYS L 122 SHEET 6 B 6 HIS L 47 GLU L 59 -1 N GLY L 50 O VAL L 101 CISPEP 1 LEU B 53 LYS B 54 0 -4.56 CISPEP 2 LYS B 54 LEU B 55 0 4.05 CISPEP 3 THR B 154 ILE B 155 0 -0.05 CISPEP 4 ILE B 155 LYS B 156 0 3.19 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000