data_3J0R # _entry.id 3J0R # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3J0R pdb_00003j0r 10.2210/pdb3j0r/pdb RCSB RCSB160105 ? ? WWPDB D_1000160105 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2012-02-29 2 'Structure model' 1 1 2012-03-14 3 'Structure model' 1 2 2012-03-21 4 'Structure model' 1 3 2012-04-04 5 'Structure model' 1 4 2024-02-21 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' Other 3 4 'Structure model' 'Database references' 4 5 'Structure model' 'Author supporting evidence' 5 5 'Structure model' 'Data collection' 6 5 'Structure model' 'Database references' 7 5 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 5 'Structure model' chem_comp_atom 2 5 'Structure model' chem_comp_bond 3 5 'Structure model' database_2 4 5 'Structure model' em_image_scans 5 5 'Structure model' em_single_particle_entity 6 5 'Structure model' pdbx_struct_oper_list # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 5 'Structure model' '_database_2.pdbx_DOI' 2 5 'Structure model' '_database_2.pdbx_database_accession' 3 5 'Structure model' '_pdbx_struct_oper_list.name' 4 5 'Structure model' '_pdbx_struct_oper_list.symmetry_operation' 5 5 'Structure model' '_pdbx_struct_oper_list.type' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3J0R _pdbx_database_status.recvd_initial_deposition_date 2011-11-03 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # _pdbx_database_related.db_name EMDB _pdbx_database_related.db_id EMD-5352 _pdbx_database_related.content_type 'associated EM volume' _pdbx_database_related.details . # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Fujii, T.' 1 'Cheung, M.' 2 'Blanco, A.' 3 'Kato, T.' 4 'Blocker, A.J.' 5 'Namba, K.' 6 # _citation.id primary _citation.title 'Structure of a type III secretion needle at 7-A resolution provides insights into its assembly and signaling mechanisms.' _citation.journal_abbrev Proc.Natl.Acad.Sci.USA _citation.journal_volume 109 _citation.page_first 4461 _citation.page_last 4466 _citation.year 2012 _citation.journal_id_ASTM PNASA6 _citation.country US _citation.journal_id_ISSN 0027-8424 _citation.journal_id_CSD 0040 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 22388746 _citation.pdbx_database_id_DOI 10.1073/pnas.1116126109 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Fujii, T.' 1 ? primary 'Cheung, M.' 2 ? primary 'Blanco, A.' 3 ? primary 'Kato, T.' 4 ? primary 'Blocker, A.J.' 5 ? primary 'Namba, K.' 6 ? # _entity.id 1 _entity.type polymer _entity.src_method nat _entity.pdbx_description 'Protein mxiH' _entity.formula_weight 9141.068 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_name_com.entity_id 1 _entity_name_com.name 'type III secretion needle' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;SVTVPNDDWTLSSLSETFDDGTQTLQGELTLALDKLAKNPSNPQLLAEYQSKLSEYTLYRNAQSNTVKVIKDVDAAIIQN FR ; _entity_poly.pdbx_seq_one_letter_code_can ;SVTVPNDDWTLSSLSETFDDGTQTLQGELTLALDKLAKNPSNPQLLAEYQSKLSEYTLYRNAQSNTVKVIKDVDAAIIQN FR ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 VAL n 1 3 THR n 1 4 VAL n 1 5 PRO n 1 6 ASN n 1 7 ASP n 1 8 ASP n 1 9 TRP n 1 10 THR n 1 11 LEU n 1 12 SER n 1 13 SER n 1 14 LEU n 1 15 SER n 1 16 GLU n 1 17 THR n 1 18 PHE n 1 19 ASP n 1 20 ASP n 1 21 GLY n 1 22 THR n 1 23 GLN n 1 24 THR n 1 25 LEU n 1 26 GLN n 1 27 GLY n 1 28 GLU n 1 29 LEU n 1 30 THR n 1 31 LEU n 1 32 ALA n 1 33 LEU n 1 34 ASP n 1 35 LYS n 1 36 LEU n 1 37 ALA n 1 38 LYS n 1 39 ASN n 1 40 PRO n 1 41 SER n 1 42 ASN n 1 43 PRO n 1 44 GLN n 1 45 LEU n 1 46 LEU n 1 47 ALA n 1 48 GLU n 1 49 TYR n 1 50 GLN n 1 51 SER n 1 52 LYS n 1 53 LEU n 1 54 SER n 1 55 GLU n 1 56 TYR n 1 57 THR n 1 58 LEU n 1 59 TYR n 1 60 ARG n 1 61 ASN n 1 62 ALA n 1 63 GLN n 1 64 SER n 1 65 ASN n 1 66 THR n 1 67 VAL n 1 68 LYS n 1 69 VAL n 1 70 ILE n 1 71 LYS n 1 72 ASP n 1 73 VAL n 1 74 ASP n 1 75 ALA n 1 76 ALA n 1 77 ILE n 1 78 ILE n 1 79 GLN n 1 80 ASN n 1 81 PHE n 1 82 ARG n # _entity_src_nat.entity_id 1 _entity_src_nat.pdbx_src_id 1 _entity_src_nat.pdbx_alt_source_flag sample _entity_src_nat.pdbx_beg_seq_num ? _entity_src_nat.pdbx_end_seq_num ? _entity_src_nat.common_name ? _entity_src_nat.pdbx_organism_scientific 'Shigella flexneri' _entity_src_nat.pdbx_ncbi_taxonomy_id 623 _entity_src_nat.genus ? _entity_src_nat.species ? _entity_src_nat.strain ? _entity_src_nat.tissue ? _entity_src_nat.tissue_fraction ? _entity_src_nat.pdbx_secretion ? _entity_src_nat.pdbx_fragment ? _entity_src_nat.pdbx_variant ? _entity_src_nat.pdbx_cell_line ? _entity_src_nat.pdbx_atcc ? _entity_src_nat.pdbx_cellular_location ? _entity_src_nat.pdbx_organ ? _entity_src_nat.pdbx_organelle ? _entity_src_nat.pdbx_cell ? _entity_src_nat.pdbx_plasmid_name ? _entity_src_nat.pdbx_plasmid_details ? _entity_src_nat.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 2 2 SER SER A . n A 1 2 VAL 2 3 3 VAL VAL A . n A 1 3 THR 3 4 4 THR THR A . n A 1 4 VAL 4 5 5 VAL VAL A . n A 1 5 PRO 5 6 6 PRO PRO A . n A 1 6 ASN 6 7 7 ASN ASN A . n A 1 7 ASP 7 8 8 ASP ASP A . n A 1 8 ASP 8 9 9 ASP ASP A . n A 1 9 TRP 9 10 10 TRP TRP A . n A 1 10 THR 10 11 11 THR THR A . n A 1 11 LEU 11 12 12 LEU LEU A . n A 1 12 SER 12 13 13 SER SER A . n A 1 13 SER 13 14 14 SER SER A . n A 1 14 LEU 14 15 15 LEU LEU A . n A 1 15 SER 15 16 16 SER SER A . n A 1 16 GLU 16 17 17 GLU GLU A . n A 1 17 THR 17 18 18 THR THR A . n A 1 18 PHE 18 19 19 PHE PHE A . n A 1 19 ASP 19 20 20 ASP ASP A . n A 1 20 ASP 20 21 21 ASP ASP A . n A 1 21 GLY 21 22 22 GLY GLY A . n A 1 22 THR 22 23 23 THR THR A . n A 1 23 GLN 23 24 24 GLN GLN A . n A 1 24 THR 24 25 25 THR THR A . n A 1 25 LEU 25 26 26 LEU LEU A . n A 1 26 GLN 26 27 27 GLN GLN A . n A 1 27 GLY 27 28 28 GLY GLY A . n A 1 28 GLU 28 29 29 GLU GLU A . n A 1 29 LEU 29 30 30 LEU LEU A . n A 1 30 THR 30 31 31 THR THR A . n A 1 31 LEU 31 32 32 LEU LEU A . n A 1 32 ALA 32 33 33 ALA ALA A . n A 1 33 LEU 33 34 34 LEU LEU A . n A 1 34 ASP 34 35 35 ASP ASP A . n A 1 35 LYS 35 36 36 LYS LYS A . n A 1 36 LEU 36 37 37 LEU LEU A . n A 1 37 ALA 37 38 38 ALA ALA A . n A 1 38 LYS 38 39 39 LYS LYS A . n A 1 39 ASN 39 40 40 ASN ASN A . n A 1 40 PRO 40 41 41 PRO PRO A . n A 1 41 SER 41 42 42 SER SER A . n A 1 42 ASN 42 43 43 ASN ASN A . n A 1 43 PRO 43 44 44 PRO PRO A . n A 1 44 GLN 44 45 45 GLN GLN A . n A 1 45 LEU 45 46 46 LEU LEU A . n A 1 46 LEU 46 47 47 LEU LEU A . n A 1 47 ALA 47 48 48 ALA ALA A . n A 1 48 GLU 48 49 49 GLU GLU A . n A 1 49 TYR 49 50 50 TYR TYR A . n A 1 50 GLN 50 51 51 GLN GLN A . n A 1 51 SER 51 52 52 SER SER A . n A 1 52 LYS 52 53 53 LYS LYS A . n A 1 53 LEU 53 54 54 LEU LEU A . n A 1 54 SER 54 55 55 SER SER A . n A 1 55 GLU 55 56 56 GLU GLU A . n A 1 56 TYR 56 57 57 TYR TYR A . n A 1 57 THR 57 58 58 THR THR A . n A 1 58 LEU 58 59 59 LEU LEU A . n A 1 59 TYR 59 60 60 TYR TYR A . n A 1 60 ARG 60 61 61 ARG ARG A . n A 1 61 ASN 61 62 62 ASN ASN A . n A 1 62 ALA 62 63 63 ALA ALA A . n A 1 63 GLN 63 64 64 GLN GLN A . n A 1 64 SER 64 65 65 SER SER A . n A 1 65 ASN 65 66 66 ASN ASN A . n A 1 66 THR 66 67 67 THR THR A . n A 1 67 VAL 67 68 68 VAL VAL A . n A 1 68 LYS 68 69 69 LYS LYS A . n A 1 69 VAL 69 70 70 VAL VAL A . n A 1 70 ILE 70 71 71 ILE ILE A . n A 1 71 LYS 71 72 72 LYS LYS A . n A 1 72 ASP 72 73 73 ASP ASP A . n A 1 73 VAL 73 74 74 VAL VAL A . n A 1 74 ASP 74 75 75 ASP ASP A . n A 1 75 ALA 75 76 76 ALA ALA A . n A 1 76 ALA 76 77 77 ALA ALA A . n A 1 77 ILE 77 78 78 ILE ILE A . n A 1 78 ILE 78 79 79 ILE ILE A . n A 1 79 GLN 79 80 80 GLN GLN A . n A 1 80 ASN 80 81 81 ASN ASN A . n A 1 81 PHE 81 82 82 PHE PHE A . n A 1 82 ARG 82 83 83 ARG ARG A . n # _cell.entry_id 3J0R _cell.length_a 1.000 _cell.length_b 1.000 _cell.length_c 1.000 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3J0R _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 # _exptl.entry_id 3J0R _exptl.method 'ELECTRON MICROSCOPY' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews ? _exptl_crystal.density_percent_sol ? _exptl_crystal.description ? # _diffrn.id 1 _diffrn.ambient_temp ? _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _refine_hist.pdbx_refine_id 'ELECTRON MICROSCOPY' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 644 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 0 _refine_hist.number_atoms_total 644 _refine_hist.d_res_high . _refine_hist.d_res_low . # _database_PDB_matrix.entry_id 3J0R _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 3J0R _struct.title 'Model of a type III secretion system needle based on a 7 Angstrom resolution cryoEM map' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3J0R _struct_keywords.pdbx_keywords 'PROTEIN TRANSPORT' _struct_keywords.text 'helical assembly, PROTEIN TRANSPORT' # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code MXIH_SHIFL _struct_ref.pdbx_db_accession P0A223 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;SVTVPNDDWTLSSLSETFDDGTQTLQGELTLALDKLAKNPSNPQLLAEYQSKLSEYTLYRNAQSNTVKVIKDVDAAIIQN FR ; _struct_ref.pdbx_align_begin 2 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3J0R _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 82 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P0A223 _struct_ref_seq.db_align_beg 2 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 83 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 2 _struct_ref_seq.pdbx_auth_seq_align_end 83 # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 'representative helical assembly' ? helical 22 2 'helical asymmetric unit' ? monomeric 1 3 'helical asymmetric unit, std helical frame' ? monomeric 1 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 '(1-22)' A 2 12 A 3 H A # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] H 'identity operation' 1_555 x,y,z 1.00000000 0.00000000 0.00000000 0.00000 0.00000000 1.00000000 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 0.00000 1 'helical symmetry operation' ? ? 0.96437297 -0.26454637 0.00000000 0.00000 0.26454637 0.96437297 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -47.30000 2 'helical symmetry operation' ? ? 0.18395135 -0.98293535 0.00000000 0.00000 0.98293535 0.18395135 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -43.00000 3 'helical symmetry operation' ? ? -0.80344140 -0.59538384 0.00000000 0.00000 0.59538384 -0.80344140 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -38.70000 4 'helical symmetry operation' ? ? -0.88684960 0.46205821 0.00000000 0.00000 -0.46205821 -0.88684960 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -34.40000 5 'helical symmetry operation' ? ? 0.02757271 0.99961980 0.00000000 0.00000 -0.99961980 0.02757271 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -30.10000 6 'helical symmetry operation' ? ? 0.91097184 0.41246855 0.00000000 0.00000 -0.41246855 0.91097184 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -25.80000 7 'helical symmetry operation' ? ? 0.76939956 -0.63876782 0.00000000 0.00000 0.63876782 0.76939956 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -21.50000 8 'helical symmetry operation' ? ? -0.23785542 -0.97130057 0.00000000 0.00000 0.97130057 -0.23785542 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -17.20000 9 'helical symmetry operation' ? ? -0.97748960 -0.21098360 0.00000000 0.00000 0.21098360 -0.97748960 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -12.90000 10 'helical symmetry operation' ? ? -0.61731053 0.78671959 0.00000000 0.00000 -0.78671959 -0.61731053 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -8.60000 11 'helical symmetry operation' ? ? 0.43742969 0.89925261 0.00000000 0.00000 -0.89925261 0.43742969 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -4.30000 12 'identity operation' 1_555 x,y,z 1.00000000 0.00000000 0.00000000 0.00000 0.00000000 1.00000000 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 0.00000 13 'helical symmetry operation' ? ? 0.43742969 -0.89925261 0.00000000 0.00000 0.89925261 0.43742969 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 4.30000 14 'helical symmetry operation' ? ? -0.61731053 -0.78671959 0.00000000 0.00000 0.78671959 -0.61731053 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 8.60000 15 'helical symmetry operation' ? ? -0.97748960 0.21098360 0.00000000 0.00000 -0.21098360 -0.97748960 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 12.90000 16 'helical symmetry operation' ? ? -0.23785542 0.97130057 0.00000000 0.00000 -0.97130057 -0.23785542 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 17.20000 17 'helical symmetry operation' ? ? 0.76939956 0.63876782 0.00000000 0.00000 -0.63876782 0.76939956 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 21.50000 18 'helical symmetry operation' ? ? 0.91097184 -0.41246855 0.00000000 0.00000 0.41246855 0.91097184 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 25.80000 19 'helical symmetry operation' ? ? 0.02757271 -0.99961980 0.00000000 0.00000 0.99961980 0.02757271 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 30.10000 20 'helical symmetry operation' ? ? -0.88684960 -0.46205821 0.00000000 0.00000 0.46205821 -0.88684960 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 34.40000 21 'helical symmetry operation' ? ? -0.80344140 0.59538384 0.00000000 0.00000 -0.59538384 -0.80344140 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 38.70000 22 'helical symmetry operation' ? ? 0.18395135 0.98293535 0.00000000 0.00000 -0.98293535 0.18395135 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 43.00000 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 VAL A 2 ? ASN A 39 ? VAL A 3 ASN A 40 1 ? 38 HELX_P HELX_P2 2 ASN A 42 ? GLN A 50 ? ASN A 43 GLN A 51 1 ? 9 HELX_P HELX_P3 3 ASN A 65 ? ARG A 82 ? ASN A 66 ARG A 83 1 ? 18 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _pdbx_helical_symmetry.entry_id 3J0R _pdbx_helical_symmetry.number_of_operations 22 _pdbx_helical_symmetry.rotation_per_n_subunits 64.060000 _pdbx_helical_symmetry.rise_per_n_subunits 4.300000 _pdbx_helical_symmetry.n_subunits_divisor 1 _pdbx_helical_symmetry.dyad_axis no _pdbx_helical_symmetry.circular_symmetry 1 # _em_3d_fitting.id 1 _em_3d_fitting.entry_id 3J0R _em_3d_fitting.ref_protocol ? _em_3d_fitting.ref_space REAL _em_3d_fitting.overall_b_value ? _em_3d_fitting.target_criteria ? _em_3d_fitting.details ? _em_3d_fitting.method ? # _em_3d_reconstruction.entry_id 3J0R _em_3d_reconstruction.id 1 _em_3d_reconstruction.symmetry_type HELICAL _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.method 'Projection Matching' _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.resolution 7.7 _em_3d_reconstruction.magnification_calibration ? _em_3d_reconstruction.details ? _em_3d_reconstruction.resolution_method ? _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.num_particles ? _em_3d_reconstruction.algorithm ? # _em_buffer.id 1 _em_buffer.specimen_id 1 _em_buffer.name '20 mM Tris, pH 7.4, 150 mM NaCl, 2mM MgSO4' _em_buffer.pH 7.4 _em_buffer.details '20 mM Tris, pH 7.4, 150 mM NaCl, 2mM MgSO4' # _em_entity_assembly.id 1 _em_entity_assembly.name 'type III secretion needle' _em_entity_assembly.type COMPLEX _em_entity_assembly.parent_id 0 _em_entity_assembly.synonym ? _em_entity_assembly.details 'a helical assembly of MxiH' _em_entity_assembly.oligomeric_details ? # _em_imaging.entry_id 3J0R _em_imaging.id 1 _em_imaging.mode 'BRIGHT FIELD' _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.specimen_id 1 _em_imaging.date 2008-07-02 _em_imaging.temperature 50 _em_imaging.microscope_model 'JEOL 3200FSC' _em_imaging.nominal_defocus_min 1000 _em_imaging.nominal_defocus_max 2000 _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.nominal_cs 1.6 _em_imaging.nominal_magnification 50000 _em_imaging.calibrated_magnification 89285 _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.accelerating_voltage 200 _em_imaging.details ? _em_imaging.specimen_holder_type ? _em_imaging.specimen_holder_model ? _em_imaging.citation_id ? _em_imaging.detector_distance ? _em_imaging.recording_temperature_maximum ? _em_imaging.recording_temperature_minimum ? _em_imaging.astigmatism ? _em_imaging.electron_beam_tilt_params ? _em_imaging.calibrated_defocus_max ? _em_imaging.alignment_procedure ? _em_imaging.c2_aperture_diameter ? _em_imaging.calibrated_defocus_min ? _em_imaging.cryogen ? _em_imaging.residual_tilt ? # _em_sample_support.id 1 _em_sample_support.specimen_id 1 _em_sample_support.details 'Quantifoil holey carbon molybdenum grid (R0.6/1.0, Quantifoil)' _em_sample_support.film_material ? _em_sample_support.grid_material ? _em_sample_support.grid_mesh_size ? _em_sample_support.grid_type ? _em_sample_support.method ? # _em_vitrification.entry_id 3J0R _em_vitrification.id 1 _em_vitrification.instrument 'FEI VITROBOT MARK I' _em_vitrification.cryogen_name ETHANE _em_vitrification.details 'Blot for 3.5 seconds before plunging into liquid ethane (Vitrobot).' _em_vitrification.citation_id ? _em_vitrification.humidity ? _em_vitrification.method ? _em_vitrification.specimen_id 1 _em_vitrification.temp ? _em_vitrification.time_resolved_state ? # _em_experiment.entry_id 3J0R _em_experiment.id 1 _em_experiment.aggregation_state FILAMENT _em_experiment.entity_assembly_id 1 _em_experiment.reconstruction_method HELICAL # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 GLN N N N N 74 GLN CA C N S 75 GLN C C N N 76 GLN O O N N 77 GLN CB C N N 78 GLN CG C N N 79 GLN CD C N N 80 GLN OE1 O N N 81 GLN NE2 N N N 82 GLN OXT O N N 83 GLN H H N N 84 GLN H2 H N N 85 GLN HA H N N 86 GLN HB2 H N N 87 GLN HB3 H N N 88 GLN HG2 H N N 89 GLN HG3 H N N 90 GLN HE21 H N N 91 GLN HE22 H N N 92 GLN HXT H N N 93 GLU N N N N 94 GLU CA C N S 95 GLU C C N N 96 GLU O O N N 97 GLU CB C N N 98 GLU CG C N N 99 GLU CD C N N 100 GLU OE1 O N N 101 GLU OE2 O N N 102 GLU OXT O N N 103 GLU H H N N 104 GLU H2 H N N 105 GLU HA H N N 106 GLU HB2 H N N 107 GLU HB3 H N N 108 GLU HG2 H N N 109 GLU HG3 H N N 110 GLU HE2 H N N 111 GLU HXT H N N 112 GLY N N N N 113 GLY CA C N N 114 GLY C C N N 115 GLY O O N N 116 GLY OXT O N N 117 GLY H H N N 118 GLY H2 H N N 119 GLY HA2 H N N 120 GLY HA3 H N N 121 GLY HXT H N N 122 ILE N N N N 123 ILE CA C N S 124 ILE C C N N 125 ILE O O N N 126 ILE CB C N S 127 ILE CG1 C N N 128 ILE CG2 C N N 129 ILE CD1 C N N 130 ILE OXT O N N 131 ILE H H N N 132 ILE H2 H N N 133 ILE HA H N N 134 ILE HB H N N 135 ILE HG12 H N N 136 ILE HG13 H N N 137 ILE HG21 H N N 138 ILE HG22 H N N 139 ILE HG23 H N N 140 ILE HD11 H N N 141 ILE HD12 H N N 142 ILE HD13 H N N 143 ILE HXT H N N 144 LEU N N N N 145 LEU CA C N S 146 LEU C C N N 147 LEU O O N N 148 LEU CB C N N 149 LEU CG C N N 150 LEU CD1 C N N 151 LEU CD2 C N N 152 LEU OXT O N N 153 LEU H H N N 154 LEU H2 H N N 155 LEU HA H N N 156 LEU HB2 H N N 157 LEU HB3 H N N 158 LEU HG H N N 159 LEU HD11 H N N 160 LEU HD12 H N N 161 LEU HD13 H N N 162 LEU HD21 H N N 163 LEU HD22 H N N 164 LEU HD23 H N N 165 LEU HXT H N N 166 LYS N N N N 167 LYS CA C N S 168 LYS C C N N 169 LYS O O N N 170 LYS CB C N N 171 LYS CG C N N 172 LYS CD C N N 173 LYS CE C N N 174 LYS NZ N N N 175 LYS OXT O N N 176 LYS H H N N 177 LYS H2 H N N 178 LYS HA H N N 179 LYS HB2 H N N 180 LYS HB3 H N N 181 LYS HG2 H N N 182 LYS HG3 H N N 183 LYS HD2 H N N 184 LYS HD3 H N N 185 LYS HE2 H N N 186 LYS HE3 H N N 187 LYS HZ1 H N N 188 LYS HZ2 H N N 189 LYS HZ3 H N N 190 LYS HXT H N N 191 PHE N N N N 192 PHE CA C N S 193 PHE C C N N 194 PHE O O N N 195 PHE CB C N N 196 PHE CG C Y N 197 PHE CD1 C Y N 198 PHE CD2 C Y N 199 PHE CE1 C Y N 200 PHE CE2 C Y N 201 PHE CZ C Y N 202 PHE OXT O N N 203 PHE H H N N 204 PHE H2 H N N 205 PHE HA H N N 206 PHE HB2 H N N 207 PHE HB3 H N N 208 PHE HD1 H N N 209 PHE HD2 H N N 210 PHE HE1 H N N 211 PHE HE2 H N N 212 PHE HZ H N N 213 PHE HXT H N N 214 PRO N N N N 215 PRO CA C N S 216 PRO C C N N 217 PRO O O N N 218 PRO CB C N N 219 PRO CG C N N 220 PRO CD C N N 221 PRO OXT O N N 222 PRO H H N N 223 PRO HA H N N 224 PRO HB2 H N N 225 PRO HB3 H N N 226 PRO HG2 H N N 227 PRO HG3 H N N 228 PRO HD2 H N N 229 PRO HD3 H N N 230 PRO HXT H N N 231 SER N N N N 232 SER CA C N S 233 SER C C N N 234 SER O O N N 235 SER CB C N N 236 SER OG O N N 237 SER OXT O N N 238 SER H H N N 239 SER H2 H N N 240 SER HA H N N 241 SER HB2 H N N 242 SER HB3 H N N 243 SER HG H N N 244 SER HXT H N N 245 THR N N N N 246 THR CA C N S 247 THR C C N N 248 THR O O N N 249 THR CB C N R 250 THR OG1 O N N 251 THR CG2 C N N 252 THR OXT O N N 253 THR H H N N 254 THR H2 H N N 255 THR HA H N N 256 THR HB H N N 257 THR HG1 H N N 258 THR HG21 H N N 259 THR HG22 H N N 260 THR HG23 H N N 261 THR HXT H N N 262 TRP N N N N 263 TRP CA C N S 264 TRP C C N N 265 TRP O O N N 266 TRP CB C N N 267 TRP CG C Y N 268 TRP CD1 C Y N 269 TRP CD2 C Y N 270 TRP NE1 N Y N 271 TRP CE2 C Y N 272 TRP CE3 C Y N 273 TRP CZ2 C Y N 274 TRP CZ3 C Y N 275 TRP CH2 C Y N 276 TRP OXT O N N 277 TRP H H N N 278 TRP H2 H N N 279 TRP HA H N N 280 TRP HB2 H N N 281 TRP HB3 H N N 282 TRP HD1 H N N 283 TRP HE1 H N N 284 TRP HE3 H N N 285 TRP HZ2 H N N 286 TRP HZ3 H N N 287 TRP HH2 H N N 288 TRP HXT H N N 289 TYR N N N N 290 TYR CA C N S 291 TYR C C N N 292 TYR O O N N 293 TYR CB C N N 294 TYR CG C Y N 295 TYR CD1 C Y N 296 TYR CD2 C Y N 297 TYR CE1 C Y N 298 TYR CE2 C Y N 299 TYR CZ C Y N 300 TYR OH O N N 301 TYR OXT O N N 302 TYR H H N N 303 TYR H2 H N N 304 TYR HA H N N 305 TYR HB2 H N N 306 TYR HB3 H N N 307 TYR HD1 H N N 308 TYR HD2 H N N 309 TYR HE1 H N N 310 TYR HE2 H N N 311 TYR HH H N N 312 TYR HXT H N N 313 VAL N N N N 314 VAL CA C N S 315 VAL C C N N 316 VAL O O N N 317 VAL CB C N N 318 VAL CG1 C N N 319 VAL CG2 C N N 320 VAL OXT O N N 321 VAL H H N N 322 VAL H2 H N N 323 VAL HA H N N 324 VAL HB H N N 325 VAL HG11 H N N 326 VAL HG12 H N N 327 VAL HG13 H N N 328 VAL HG21 H N N 329 VAL HG22 H N N 330 VAL HG23 H N N 331 VAL HXT H N N 332 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 GLN N CA sing N N 70 GLN N H sing N N 71 GLN N H2 sing N N 72 GLN CA C sing N N 73 GLN CA CB sing N N 74 GLN CA HA sing N N 75 GLN C O doub N N 76 GLN C OXT sing N N 77 GLN CB CG sing N N 78 GLN CB HB2 sing N N 79 GLN CB HB3 sing N N 80 GLN CG CD sing N N 81 GLN CG HG2 sing N N 82 GLN CG HG3 sing N N 83 GLN CD OE1 doub N N 84 GLN CD NE2 sing N N 85 GLN NE2 HE21 sing N N 86 GLN NE2 HE22 sing N N 87 GLN OXT HXT sing N N 88 GLU N CA sing N N 89 GLU N H sing N N 90 GLU N H2 sing N N 91 GLU CA C sing N N 92 GLU CA CB sing N N 93 GLU CA HA sing N N 94 GLU C O doub N N 95 GLU C OXT sing N N 96 GLU CB CG sing N N 97 GLU CB HB2 sing N N 98 GLU CB HB3 sing N N 99 GLU CG CD sing N N 100 GLU CG HG2 sing N N 101 GLU CG HG3 sing N N 102 GLU CD OE1 doub N N 103 GLU CD OE2 sing N N 104 GLU OE2 HE2 sing N N 105 GLU OXT HXT sing N N 106 GLY N CA sing N N 107 GLY N H sing N N 108 GLY N H2 sing N N 109 GLY CA C sing N N 110 GLY CA HA2 sing N N 111 GLY CA HA3 sing N N 112 GLY C O doub N N 113 GLY C OXT sing N N 114 GLY OXT HXT sing N N 115 ILE N CA sing N N 116 ILE N H sing N N 117 ILE N H2 sing N N 118 ILE CA C sing N N 119 ILE CA CB sing N N 120 ILE CA HA sing N N 121 ILE C O doub N N 122 ILE C OXT sing N N 123 ILE CB CG1 sing N N 124 ILE CB CG2 sing N N 125 ILE CB HB sing N N 126 ILE CG1 CD1 sing N N 127 ILE CG1 HG12 sing N N 128 ILE CG1 HG13 sing N N 129 ILE CG2 HG21 sing N N 130 ILE CG2 HG22 sing N N 131 ILE CG2 HG23 sing N N 132 ILE CD1 HD11 sing N N 133 ILE CD1 HD12 sing N N 134 ILE CD1 HD13 sing N N 135 ILE OXT HXT sing N N 136 LEU N CA sing N N 137 LEU N H sing N N 138 LEU N H2 sing N N 139 LEU CA C sing N N 140 LEU CA CB sing N N 141 LEU CA HA sing N N 142 LEU C O doub N N 143 LEU C OXT sing N N 144 LEU CB CG sing N N 145 LEU CB HB2 sing N N 146 LEU CB HB3 sing N N 147 LEU CG CD1 sing N N 148 LEU CG CD2 sing N N 149 LEU CG HG sing N N 150 LEU CD1 HD11 sing N N 151 LEU CD1 HD12 sing N N 152 LEU CD1 HD13 sing N N 153 LEU CD2 HD21 sing N N 154 LEU CD2 HD22 sing N N 155 LEU CD2 HD23 sing N N 156 LEU OXT HXT sing N N 157 LYS N CA sing N N 158 LYS N H sing N N 159 LYS N H2 sing N N 160 LYS CA C sing N N 161 LYS CA CB sing N N 162 LYS CA HA sing N N 163 LYS C O doub N N 164 LYS C OXT sing N N 165 LYS CB CG sing N N 166 LYS CB HB2 sing N N 167 LYS CB HB3 sing N N 168 LYS CG CD sing N N 169 LYS CG HG2 sing N N 170 LYS CG HG3 sing N N 171 LYS CD CE sing N N 172 LYS CD HD2 sing N N 173 LYS CD HD3 sing N N 174 LYS CE NZ sing N N 175 LYS CE HE2 sing N N 176 LYS CE HE3 sing N N 177 LYS NZ HZ1 sing N N 178 LYS NZ HZ2 sing N N 179 LYS NZ HZ3 sing N N 180 LYS OXT HXT sing N N 181 PHE N CA sing N N 182 PHE N H sing N N 183 PHE N H2 sing N N 184 PHE CA C sing N N 185 PHE CA CB sing N N 186 PHE CA HA sing N N 187 PHE C O doub N N 188 PHE C OXT sing N N 189 PHE CB CG sing N N 190 PHE CB HB2 sing N N 191 PHE CB HB3 sing N N 192 PHE CG CD1 doub Y N 193 PHE CG CD2 sing Y N 194 PHE CD1 CE1 sing Y N 195 PHE CD1 HD1 sing N N 196 PHE CD2 CE2 doub Y N 197 PHE CD2 HD2 sing N N 198 PHE CE1 CZ doub Y N 199 PHE CE1 HE1 sing N N 200 PHE CE2 CZ sing Y N 201 PHE CE2 HE2 sing N N 202 PHE CZ HZ sing N N 203 PHE OXT HXT sing N N 204 PRO N CA sing N N 205 PRO N CD sing N N 206 PRO N H sing N N 207 PRO CA C sing N N 208 PRO CA CB sing N N 209 PRO CA HA sing N N 210 PRO C O doub N N 211 PRO C OXT sing N N 212 PRO CB CG sing N N 213 PRO CB HB2 sing N N 214 PRO CB HB3 sing N N 215 PRO CG CD sing N N 216 PRO CG HG2 sing N N 217 PRO CG HG3 sing N N 218 PRO CD HD2 sing N N 219 PRO CD HD3 sing N N 220 PRO OXT HXT sing N N 221 SER N CA sing N N 222 SER N H sing N N 223 SER N H2 sing N N 224 SER CA C sing N N 225 SER CA CB sing N N 226 SER CA HA sing N N 227 SER C O doub N N 228 SER C OXT sing N N 229 SER CB OG sing N N 230 SER CB HB2 sing N N 231 SER CB HB3 sing N N 232 SER OG HG sing N N 233 SER OXT HXT sing N N 234 THR N CA sing N N 235 THR N H sing N N 236 THR N H2 sing N N 237 THR CA C sing N N 238 THR CA CB sing N N 239 THR CA HA sing N N 240 THR C O doub N N 241 THR C OXT sing N N 242 THR CB OG1 sing N N 243 THR CB CG2 sing N N 244 THR CB HB sing N N 245 THR OG1 HG1 sing N N 246 THR CG2 HG21 sing N N 247 THR CG2 HG22 sing N N 248 THR CG2 HG23 sing N N 249 THR OXT HXT sing N N 250 TRP N CA sing N N 251 TRP N H sing N N 252 TRP N H2 sing N N 253 TRP CA C sing N N 254 TRP CA CB sing N N 255 TRP CA HA sing N N 256 TRP C O doub N N 257 TRP C OXT sing N N 258 TRP CB CG sing N N 259 TRP CB HB2 sing N N 260 TRP CB HB3 sing N N 261 TRP CG CD1 doub Y N 262 TRP CG CD2 sing Y N 263 TRP CD1 NE1 sing Y N 264 TRP CD1 HD1 sing N N 265 TRP CD2 CE2 doub Y N 266 TRP CD2 CE3 sing Y N 267 TRP NE1 CE2 sing Y N 268 TRP NE1 HE1 sing N N 269 TRP CE2 CZ2 sing Y N 270 TRP CE3 CZ3 doub Y N 271 TRP CE3 HE3 sing N N 272 TRP CZ2 CH2 doub Y N 273 TRP CZ2 HZ2 sing N N 274 TRP CZ3 CH2 sing Y N 275 TRP CZ3 HZ3 sing N N 276 TRP CH2 HH2 sing N N 277 TRP OXT HXT sing N N 278 TYR N CA sing N N 279 TYR N H sing N N 280 TYR N H2 sing N N 281 TYR CA C sing N N 282 TYR CA CB sing N N 283 TYR CA HA sing N N 284 TYR C O doub N N 285 TYR C OXT sing N N 286 TYR CB CG sing N N 287 TYR CB HB2 sing N N 288 TYR CB HB3 sing N N 289 TYR CG CD1 doub Y N 290 TYR CG CD2 sing Y N 291 TYR CD1 CE1 sing Y N 292 TYR CD1 HD1 sing N N 293 TYR CD2 CE2 doub Y N 294 TYR CD2 HD2 sing N N 295 TYR CE1 CZ doub Y N 296 TYR CE1 HE1 sing N N 297 TYR CE2 CZ sing Y N 298 TYR CE2 HE2 sing N N 299 TYR CZ OH sing N N 300 TYR OH HH sing N N 301 TYR OXT HXT sing N N 302 VAL N CA sing N N 303 VAL N H sing N N 304 VAL N H2 sing N N 305 VAL CA C sing N N 306 VAL CA CB sing N N 307 VAL CA HA sing N N 308 VAL C O doub N N 309 VAL C OXT sing N N 310 VAL CB CG1 sing N N 311 VAL CB CG2 sing N N 312 VAL CB HB sing N N 313 VAL CG1 HG11 sing N N 314 VAL CG1 HG12 sing N N 315 VAL CG1 HG13 sing N N 316 VAL CG2 HG21 sing N N 317 VAL CG2 HG22 sing N N 318 VAL CG2 HG23 sing N N 319 VAL OXT HXT sing N N 320 # _em_ctf_correction.id 1 _em_ctf_correction.details 'CTFFIND3 Each particle' _em_ctf_correction.type . # _em_helical_entity.id 1 _em_helical_entity.angular_rotation_per_subunit 64.06 _em_helical_entity.axial_rise_per_subunit 4.30 _em_helical_entity.axial_symmetry C1 _em_helical_entity.details ? _em_helical_entity.image_processing_id 1 # _em_image_processing.id 1 _em_image_processing.image_recording_id 1 _em_image_processing.details ? # _em_image_recording.avg_electron_dose_per_image 20 _em_image_recording.details ? _em_image_recording.id 1 _em_image_recording.film_or_detector_model 'TVIPS TEMCAM-F415 (4k x 4k)' _em_image_recording.imaging_id 1 _em_image_recording.average_exposure_time ? _em_image_recording.num_grids_imaged ? _em_image_recording.num_diffraction_images ? _em_image_recording.num_real_images ? _em_image_recording.detector_mode ? # _em_specimen.experiment_id 1 _em_specimen.id 1 _em_specimen.concentration ? _em_specimen.vitrification_applied YES _em_specimen.staining_applied NO _em_specimen.embedding_applied NO _em_specimen.shadowing_applied NO _em_specimen.details ? # _atom_sites.entry_id 3J0R _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O # loop_