data_3J1Z # _entry.id 3J1Z # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3J1Z pdb_00003j1z 10.2210/pdb3j1z/pdb RCSB RCSB160149 ? ? WWPDB D_1000160149 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2012-10-10 2 'Structure model' 1 1 2013-01-09 3 'Structure model' 1 2 2013-02-06 4 'Structure model' 1 3 2013-02-13 5 'Structure model' 1 4 2018-07-18 6 'Structure model' 1 5 2024-02-21 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Structure summary' 2 3 'Structure model' 'Database references' 3 4 'Structure model' 'Database references' 4 5 'Structure model' 'Author supporting evidence' 5 5 'Structure model' 'Data collection' 6 6 'Structure model' 'Data collection' 7 6 'Structure model' 'Database references' 8 6 'Structure model' 'Derived calculations' 9 6 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 5 'Structure model' em_single_particle_entity 2 5 'Structure model' em_software 3 6 'Structure model' chem_comp_atom 4 6 'Structure model' chem_comp_bond 5 6 'Structure model' database_2 6 6 'Structure model' em_3d_fitting_list 7 6 'Structure model' pdbx_initial_refinement_model 8 6 'Structure model' pdbx_struct_oper_list 9 6 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 5 'Structure model' '_em_software.image_processing_id' 2 6 'Structure model' '_database_2.pdbx_DOI' 3 6 'Structure model' '_database_2.pdbx_database_accession' 4 6 'Structure model' '_em_3d_fitting_list.accession_code' 5 6 'Structure model' '_em_3d_fitting_list.initial_refinement_model_id' 6 6 'Structure model' '_em_3d_fitting_list.source_name' 7 6 'Structure model' '_em_3d_fitting_list.type' 8 6 'Structure model' '_pdbx_struct_oper_list.name' 9 6 'Structure model' '_pdbx_struct_oper_list.symmetry_operation' 10 6 'Structure model' '_pdbx_struct_oper_list.type' 11 6 'Structure model' '_struct_ref_seq_dif.details' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3J1Z _pdbx_database_status.recvd_initial_deposition_date 2012-07-24 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.content_type _pdbx_database_related.details EMDB EMD-5450 'associated EM volume' . TargetTrack TEMIMPS-GO.15206 unspecified . # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Coudray, N.' 1 'Valvo, S.' 2 'Hu, M.' 3 'Lasala, R.' 4 'Kim, C.' 5 'Vink, M.' 6 'Zhou, M.' 7 'Provasi, D.' 8 'Filizola, M.' 9 'Tao, J.' 10 'Fang, J.' 11 'Penczek, P.A.' 12 'Ubarretxena-Belandia, I.' 13 'Stokes, D.L.' 14 'Transcontinental EM Initiative for Membrane Protein Structure (TEMIMPS)' 15 # _citation.id primary _citation.title 'Inward-facing conformation of the zinc transporter YiiP revealed by cryoelectron microscopy.' _citation.journal_abbrev Proc.Natl.Acad.Sci.USA _citation.journal_volume 110 _citation.page_first 2140 _citation.page_last 2145 _citation.year 2013 _citation.journal_id_ASTM PNASA6 _citation.country US _citation.journal_id_ISSN 0027-8424 _citation.journal_id_CSD 0040 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 23341604 _citation.pdbx_database_id_DOI 10.1073/pnas.1215455110 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Coudray, N.' 1 ? primary 'Valvo, S.' 2 ? primary 'Hu, M.' 3 ? primary 'Lasala, R.' 4 ? primary 'Kim, C.' 5 ? primary 'Vink, M.' 6 ? primary 'Zhou, M.' 7 ? primary 'Provasi, D.' 8 ? primary 'Filizola, M.' 9 ? primary 'Tao, J.' 10 ? primary 'Fang, J.' 11 ? primary 'Penczek, P.A.' 12 ? primary 'Ubarretxena-Belandia, I.' 13 ? primary 'Stokes, D.L.' 14 ? # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'Cation efflux family protein' _entity.formula_weight 33866.660 _entity.pdbx_number_of_molecules 2 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_name_com.entity_id 1 _entity_name_com.name 'YiiP, Ferrous-iron efflux pump (Fief)' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MTQTSQYDFWVKLASRASVATALTLITIKLLAWLYSGSASMLASLTDSFADTLASIINFIAIRYAIVPADHDHRYGHGKA EPLAALAQSAFIMGSAFLLLFYGGERLLNPSPVENATLGVVVSVVAIVLTLALVLLQKRALAATNSTVVEADSLHYKSDL FLNAAVLLALVLSQYGWWWADGLFAVLIACYIGQQAFDLGYRSIQALLDRELDEDTRQRIKLIAKEDPRVLGLHDLRTRQ AGKTVFIQFHLELDGNLSLNEAHSITDTTGLRVKAAFEDAEVIIHQDPVQVEPTTQHHHHHHHHHH ; _entity_poly.pdbx_seq_one_letter_code_can ;MTQTSQYDFWVKLASRASVATALTLITIKLLAWLYSGSASMLASLTDSFADTLASIINFIAIRYAIVPADHDHRYGHGKA EPLAALAQSAFIMGSAFLLLFYGGERLLNPSPVENATLGVVVSVVAIVLTLALVLLQKRALAATNSTVVEADSLHYKSDL FLNAAVLLALVLSQYGWWWADGLFAVLIACYIGQQAFDLGYRSIQALLDRELDEDTRQRIKLIAKEDPRVLGLHDLRTRQ AGKTVFIQFHLELDGNLSLNEAHSITDTTGLRVKAAFEDAEVIIHQDPVQVEPTTQHHHHHHHHHH ; _entity_poly.pdbx_strand_id P,Q _entity_poly.pdbx_target_identifier TEMIMPS-GO.15206 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 THR n 1 3 GLN n 1 4 THR n 1 5 SER n 1 6 GLN n 1 7 TYR n 1 8 ASP n 1 9 PHE n 1 10 TRP n 1 11 VAL n 1 12 LYS n 1 13 LEU n 1 14 ALA n 1 15 SER n 1 16 ARG n 1 17 ALA n 1 18 SER n 1 19 VAL n 1 20 ALA n 1 21 THR n 1 22 ALA n 1 23 LEU n 1 24 THR n 1 25 LEU n 1 26 ILE n 1 27 THR n 1 28 ILE n 1 29 LYS n 1 30 LEU n 1 31 LEU n 1 32 ALA n 1 33 TRP n 1 34 LEU n 1 35 TYR n 1 36 SER n 1 37 GLY n 1 38 SER n 1 39 ALA n 1 40 SER n 1 41 MET n 1 42 LEU n 1 43 ALA n 1 44 SER n 1 45 LEU n 1 46 THR n 1 47 ASP n 1 48 SER n 1 49 PHE n 1 50 ALA n 1 51 ASP n 1 52 THR n 1 53 LEU n 1 54 ALA n 1 55 SER n 1 56 ILE n 1 57 ILE n 1 58 ASN n 1 59 PHE n 1 60 ILE n 1 61 ALA n 1 62 ILE n 1 63 ARG n 1 64 TYR n 1 65 ALA n 1 66 ILE n 1 67 VAL n 1 68 PRO n 1 69 ALA n 1 70 ASP n 1 71 HIS n 1 72 ASP n 1 73 HIS n 1 74 ARG n 1 75 TYR n 1 76 GLY n 1 77 HIS n 1 78 GLY n 1 79 LYS n 1 80 ALA n 1 81 GLU n 1 82 PRO n 1 83 LEU n 1 84 ALA n 1 85 ALA n 1 86 LEU n 1 87 ALA n 1 88 GLN n 1 89 SER n 1 90 ALA n 1 91 PHE n 1 92 ILE n 1 93 MET n 1 94 GLY n 1 95 SER n 1 96 ALA n 1 97 PHE n 1 98 LEU n 1 99 LEU n 1 100 LEU n 1 101 PHE n 1 102 TYR n 1 103 GLY n 1 104 GLY n 1 105 GLU n 1 106 ARG n 1 107 LEU n 1 108 LEU n 1 109 ASN n 1 110 PRO n 1 111 SER n 1 112 PRO n 1 113 VAL n 1 114 GLU n 1 115 ASN n 1 116 ALA n 1 117 THR n 1 118 LEU n 1 119 GLY n 1 120 VAL n 1 121 VAL n 1 122 VAL n 1 123 SER n 1 124 VAL n 1 125 VAL n 1 126 ALA n 1 127 ILE n 1 128 VAL n 1 129 LEU n 1 130 THR n 1 131 LEU n 1 132 ALA n 1 133 LEU n 1 134 VAL n 1 135 LEU n 1 136 LEU n 1 137 GLN n 1 138 LYS n 1 139 ARG n 1 140 ALA n 1 141 LEU n 1 142 ALA n 1 143 ALA n 1 144 THR n 1 145 ASN n 1 146 SER n 1 147 THR n 1 148 VAL n 1 149 VAL n 1 150 GLU n 1 151 ALA n 1 152 ASP n 1 153 SER n 1 154 LEU n 1 155 HIS n 1 156 TYR n 1 157 LYS n 1 158 SER n 1 159 ASP n 1 160 LEU n 1 161 PHE n 1 162 LEU n 1 163 ASN n 1 164 ALA n 1 165 ALA n 1 166 VAL n 1 167 LEU n 1 168 LEU n 1 169 ALA n 1 170 LEU n 1 171 VAL n 1 172 LEU n 1 173 SER n 1 174 GLN n 1 175 TYR n 1 176 GLY n 1 177 TRP n 1 178 TRP n 1 179 TRP n 1 180 ALA n 1 181 ASP n 1 182 GLY n 1 183 LEU n 1 184 PHE n 1 185 ALA n 1 186 VAL n 1 187 LEU n 1 188 ILE n 1 189 ALA n 1 190 CYS n 1 191 TYR n 1 192 ILE n 1 193 GLY n 1 194 GLN n 1 195 GLN n 1 196 ALA n 1 197 PHE n 1 198 ASP n 1 199 LEU n 1 200 GLY n 1 201 TYR n 1 202 ARG n 1 203 SER n 1 204 ILE n 1 205 GLN n 1 206 ALA n 1 207 LEU n 1 208 LEU n 1 209 ASP n 1 210 ARG n 1 211 GLU n 1 212 LEU n 1 213 ASP n 1 214 GLU n 1 215 ASP n 1 216 THR n 1 217 ARG n 1 218 GLN n 1 219 ARG n 1 220 ILE n 1 221 LYS n 1 222 LEU n 1 223 ILE n 1 224 ALA n 1 225 LYS n 1 226 GLU n 1 227 ASP n 1 228 PRO n 1 229 ARG n 1 230 VAL n 1 231 LEU n 1 232 GLY n 1 233 LEU n 1 234 HIS n 1 235 ASP n 1 236 LEU n 1 237 ARG n 1 238 THR n 1 239 ARG n 1 240 GLN n 1 241 ALA n 1 242 GLY n 1 243 LYS n 1 244 THR n 1 245 VAL n 1 246 PHE n 1 247 ILE n 1 248 GLN n 1 249 PHE n 1 250 HIS n 1 251 LEU n 1 252 GLU n 1 253 LEU n 1 254 ASP n 1 255 GLY n 1 256 ASN n 1 257 LEU n 1 258 SER n 1 259 LEU n 1 260 ASN n 1 261 GLU n 1 262 ALA n 1 263 HIS n 1 264 SER n 1 265 ILE n 1 266 THR n 1 267 ASP n 1 268 THR n 1 269 THR n 1 270 GLY n 1 271 LEU n 1 272 ARG n 1 273 VAL n 1 274 LYS n 1 275 ALA n 1 276 ALA n 1 277 PHE n 1 278 GLU n 1 279 ASP n 1 280 ALA n 1 281 GLU n 1 282 VAL n 1 283 ILE n 1 284 ILE n 1 285 HIS n 1 286 GLN n 1 287 ASP n 1 288 PRO n 1 289 VAL n 1 290 GLN n 1 291 VAL n 1 292 GLU n 1 293 PRO n 1 294 THR n 1 295 THR n 1 296 GLN n 1 297 HIS n 1 298 HIS n 1 299 HIS n 1 300 HIS n 1 301 HIS n 1 302 HIS n 1 303 HIS n 1 304 HIS n 1 305 HIS n 1 306 HIS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene SO_4475 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain MR-1 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Shewanella oneidensis' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 211586 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector pET _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 1 MET MET P . n A 1 2 THR 2 2 2 THR THR P . n A 1 3 GLN 3 3 3 GLN GLN P . n A 1 4 THR 4 4 4 THR THR P . n A 1 5 SER 5 5 5 SER SER P . n A 1 6 GLN 6 6 6 GLN GLN P . n A 1 7 TYR 7 7 7 TYR TYR P . n A 1 8 ASP 8 8 8 ASP ASP P . n A 1 9 PHE 9 9 9 PHE PHE P . n A 1 10 TRP 10 10 10 TRP TRP P . n A 1 11 VAL 11 11 11 VAL VAL P . n A 1 12 LYS 12 12 12 LYS LYS P . n A 1 13 LEU 13 13 13 LEU LEU P . n A 1 14 ALA 14 14 14 ALA ALA P . n A 1 15 SER 15 15 15 SER SER P . n A 1 16 ARG 16 16 16 ARG ARG P . n A 1 17 ALA 17 17 17 ALA ALA P . n A 1 18 SER 18 18 18 SER SER P . n A 1 19 VAL 19 19 19 VAL VAL P . n A 1 20 ALA 20 20 20 ALA ALA P . n A 1 21 THR 21 21 21 THR THR P . n A 1 22 ALA 22 22 22 ALA ALA P . n A 1 23 LEU 23 23 23 LEU LEU P . n A 1 24 THR 24 24 24 THR THR P . n A 1 25 LEU 25 25 25 LEU LEU P . n A 1 26 ILE 26 26 26 ILE ILE P . n A 1 27 THR 27 27 27 THR THR P . n A 1 28 ILE 28 28 28 ILE ILE P . n A 1 29 LYS 29 29 29 LYS LYS P . n A 1 30 LEU 30 30 30 LEU LEU P . n A 1 31 LEU 31 31 31 LEU LEU P . n A 1 32 ALA 32 32 32 ALA ALA P . n A 1 33 TRP 33 33 33 TRP TRP P . n A 1 34 LEU 34 34 34 LEU LEU P . n A 1 35 TYR 35 35 35 TYR TYR P . n A 1 36 SER 36 36 36 SER SER P . n A 1 37 GLY 37 37 37 GLY GLY P . n A 1 38 SER 38 38 38 SER SER P . n A 1 39 ALA 39 39 39 ALA ALA P . n A 1 40 SER 40 40 40 SER SER P . n A 1 41 MET 41 41 41 MET MET P . n A 1 42 LEU 42 42 42 LEU LEU P . n A 1 43 ALA 43 43 43 ALA ALA P . n A 1 44 SER 44 44 44 SER SER P . n A 1 45 LEU 45 45 45 LEU LEU P . n A 1 46 THR 46 46 46 THR THR P . n A 1 47 ASP 47 47 47 ASP ASP P . n A 1 48 SER 48 48 48 SER SER P . n A 1 49 PHE 49 49 49 PHE PHE P . n A 1 50 ALA 50 50 50 ALA ALA P . n A 1 51 ASP 51 51 51 ASP ASP P . n A 1 52 THR 52 52 52 THR THR P . n A 1 53 LEU 53 53 53 LEU LEU P . n A 1 54 ALA 54 54 54 ALA ALA P . n A 1 55 SER 55 55 55 SER SER P . n A 1 56 ILE 56 56 56 ILE ILE P . n A 1 57 ILE 57 57 57 ILE ILE P . n A 1 58 ASN 58 58 58 ASN ASN P . n A 1 59 PHE 59 59 59 PHE PHE P . n A 1 60 ILE 60 60 60 ILE ILE P . n A 1 61 ALA 61 61 61 ALA ALA P . n A 1 62 ILE 62 62 62 ILE ILE P . n A 1 63 ARG 63 63 63 ARG ARG P . n A 1 64 TYR 64 64 64 TYR TYR P . n A 1 65 ALA 65 65 65 ALA ALA P . n A 1 66 ILE 66 66 66 ILE ILE P . n A 1 67 VAL 67 67 67 VAL VAL P . n A 1 68 PRO 68 68 68 PRO PRO P . n A 1 69 ALA 69 69 69 ALA ALA P . n A 1 70 ASP 70 70 70 ASP ASP P . n A 1 71 HIS 71 71 71 HIS HIS P . n A 1 72 ASP 72 72 72 ASP ASP P . n A 1 73 HIS 73 73 73 HIS HIS P . n A 1 74 ARG 74 74 74 ARG ARG P . n A 1 75 TYR 75 75 75 TYR TYR P . n A 1 76 GLY 76 76 76 GLY GLY P . n A 1 77 HIS 77 77 77 HIS HIS P . n A 1 78 GLY 78 78 78 GLY GLY P . n A 1 79 LYS 79 79 79 LYS LYS P . n A 1 80 ALA 80 80 80 ALA ALA P . n A 1 81 GLU 81 81 81 GLU GLU P . n A 1 82 PRO 82 82 82 PRO PRO P . n A 1 83 LEU 83 83 83 LEU LEU P . n A 1 84 ALA 84 84 84 ALA ALA P . n A 1 85 ALA 85 85 85 ALA ALA P . n A 1 86 LEU 86 86 86 LEU LEU P . n A 1 87 ALA 87 87 87 ALA ALA P . n A 1 88 GLN 88 88 88 GLN GLN P . n A 1 89 SER 89 89 89 SER SER P . n A 1 90 ALA 90 90 90 ALA ALA P . n A 1 91 PHE 91 91 91 PHE PHE P . n A 1 92 ILE 92 92 92 ILE ILE P . n A 1 93 MET 93 93 93 MET MET P . n A 1 94 GLY 94 94 94 GLY GLY P . n A 1 95 SER 95 95 95 SER SER P . n A 1 96 ALA 96 96 96 ALA ALA P . n A 1 97 PHE 97 97 97 PHE PHE P . n A 1 98 LEU 98 98 98 LEU LEU P . n A 1 99 LEU 99 99 99 LEU LEU P . n A 1 100 LEU 100 100 100 LEU LEU P . n A 1 101 PHE 101 101 101 PHE PHE P . n A 1 102 TYR 102 102 102 TYR TYR P . n A 1 103 GLY 103 103 103 GLY GLY P . n A 1 104 GLY 104 104 104 GLY GLY P . n A 1 105 GLU 105 105 105 GLU GLU P . n A 1 106 ARG 106 106 106 ARG ARG P . n A 1 107 LEU 107 107 107 LEU LEU P . n A 1 108 LEU 108 108 108 LEU LEU P . n A 1 109 ASN 109 109 109 ASN ASN P . n A 1 110 PRO 110 110 110 PRO PRO P . n A 1 111 SER 111 111 111 SER SER P . n A 1 112 PRO 112 112 112 PRO PRO P . n A 1 113 VAL 113 113 113 VAL VAL P . n A 1 114 GLU 114 114 114 GLU GLU P . n A 1 115 ASN 115 115 115 ASN ASN P . n A 1 116 ALA 116 116 116 ALA ALA P . n A 1 117 THR 117 117 117 THR THR P . n A 1 118 LEU 118 118 118 LEU LEU P . n A 1 119 GLY 119 119 119 GLY GLY P . n A 1 120 VAL 120 120 120 VAL VAL P . n A 1 121 VAL 121 121 121 VAL VAL P . n A 1 122 VAL 122 122 122 VAL VAL P . n A 1 123 SER 123 123 123 SER SER P . n A 1 124 VAL 124 124 124 VAL VAL P . n A 1 125 VAL 125 125 125 VAL VAL P . n A 1 126 ALA 126 126 126 ALA ALA P . n A 1 127 ILE 127 127 127 ILE ILE P . n A 1 128 VAL 128 128 128 VAL VAL P . n A 1 129 LEU 129 129 129 LEU LEU P . n A 1 130 THR 130 130 130 THR THR P . n A 1 131 LEU 131 131 131 LEU LEU P . n A 1 132 ALA 132 132 132 ALA ALA P . n A 1 133 LEU 133 133 133 LEU LEU P . n A 1 134 VAL 134 134 134 VAL VAL P . n A 1 135 LEU 135 135 135 LEU LEU P . n A 1 136 LEU 136 136 136 LEU LEU P . n A 1 137 GLN 137 137 137 GLN GLN P . n A 1 138 LYS 138 138 138 LYS LYS P . n A 1 139 ARG 139 139 139 ARG ARG P . n A 1 140 ALA 140 140 140 ALA ALA P . n A 1 141 LEU 141 141 141 LEU LEU P . n A 1 142 ALA 142 142 142 ALA ALA P . n A 1 143 ALA 143 143 143 ALA ALA P . n A 1 144 THR 144 144 144 THR THR P . n A 1 145 ASN 145 145 145 ASN ASN P . n A 1 146 SER 146 146 146 SER SER P . n A 1 147 THR 147 147 147 THR THR P . n A 1 148 VAL 148 148 148 VAL VAL P . n A 1 149 VAL 149 149 149 VAL VAL P . n A 1 150 GLU 150 150 150 GLU GLU P . n A 1 151 ALA 151 151 151 ALA ALA P . n A 1 152 ASP 152 152 152 ASP ASP P . n A 1 153 SER 153 153 153 SER SER P . n A 1 154 LEU 154 154 154 LEU LEU P . n A 1 155 HIS 155 155 155 HIS HIS P . n A 1 156 TYR 156 156 156 TYR TYR P . n A 1 157 LYS 157 157 157 LYS LYS P . n A 1 158 SER 158 158 158 SER SER P . n A 1 159 ASP 159 159 159 ASP ASP P . n A 1 160 LEU 160 160 160 LEU LEU P . n A 1 161 PHE 161 161 161 PHE PHE P . n A 1 162 LEU 162 162 162 LEU LEU P . n A 1 163 ASN 163 163 163 ASN ASN P . n A 1 164 ALA 164 164 164 ALA ALA P . n A 1 165 ALA 165 165 165 ALA ALA P . n A 1 166 VAL 166 166 166 VAL VAL P . n A 1 167 LEU 167 167 167 LEU LEU P . n A 1 168 LEU 168 168 168 LEU LEU P . n A 1 169 ALA 169 169 169 ALA ALA P . n A 1 170 LEU 170 170 170 LEU LEU P . n A 1 171 VAL 171 171 171 VAL VAL P . n A 1 172 LEU 172 172 172 LEU LEU P . n A 1 173 SER 173 173 173 SER SER P . n A 1 174 GLN 174 174 174 GLN GLN P . n A 1 175 TYR 175 175 175 TYR TYR P . n A 1 176 GLY 176 176 176 GLY GLY P . n A 1 177 TRP 177 177 177 TRP TRP P . n A 1 178 TRP 178 178 178 TRP TRP P . n A 1 179 TRP 179 179 179 TRP TRP P . n A 1 180 ALA 180 180 180 ALA ALA P . n A 1 181 ASP 181 181 181 ASP ASP P . n A 1 182 GLY 182 182 182 GLY GLY P . n A 1 183 LEU 183 183 183 LEU LEU P . n A 1 184 PHE 184 184 184 PHE PHE P . n A 1 185 ALA 185 185 185 ALA ALA P . n A 1 186 VAL 186 186 186 VAL VAL P . n A 1 187 LEU 187 187 187 LEU LEU P . n A 1 188 ILE 188 188 188 ILE ILE P . n A 1 189 ALA 189 189 189 ALA ALA P . n A 1 190 CYS 190 190 190 CYS CYS P . n A 1 191 TYR 191 191 191 TYR TYR P . n A 1 192 ILE 192 192 192 ILE ILE P . n A 1 193 GLY 193 193 193 GLY GLY P . n A 1 194 GLN 194 194 194 GLN GLN P . n A 1 195 GLN 195 195 195 GLN GLN P . n A 1 196 ALA 196 196 196 ALA ALA P . n A 1 197 PHE 197 197 197 PHE PHE P . n A 1 198 ASP 198 198 198 ASP ASP P . n A 1 199 LEU 199 199 199 LEU LEU P . n A 1 200 GLY 200 200 200 GLY GLY P . n A 1 201 TYR 201 201 201 TYR TYR P . n A 1 202 ARG 202 202 202 ARG ARG P . n A 1 203 SER 203 203 203 SER SER P . n A 1 204 ILE 204 204 204 ILE ILE P . n A 1 205 GLN 205 205 205 GLN GLN P . n A 1 206 ALA 206 206 206 ALA ALA P . n A 1 207 LEU 207 207 207 LEU LEU P . n A 1 208 LEU 208 208 208 LEU LEU P . n A 1 209 ASP 209 209 209 ASP ASP P . n A 1 210 ARG 210 210 210 ARG ARG P . n A 1 211 GLU 211 211 211 GLU GLU P . n A 1 212 LEU 212 212 212 LEU LEU P . n A 1 213 ASP 213 213 213 ASP ASP P . n A 1 214 GLU 214 214 214 GLU GLU P . n A 1 215 ASP 215 215 215 ASP ASP P . n A 1 216 THR 216 216 216 THR THR P . n A 1 217 ARG 217 217 217 ARG ARG P . n A 1 218 GLN 218 218 218 GLN GLN P . n A 1 219 ARG 219 219 219 ARG ARG P . n A 1 220 ILE 220 220 220 ILE ILE P . n A 1 221 LYS 221 221 221 LYS LYS P . n A 1 222 LEU 222 222 222 LEU LEU P . n A 1 223 ILE 223 223 223 ILE ILE P . n A 1 224 ALA 224 224 224 ALA ALA P . n A 1 225 LYS 225 225 225 LYS LYS P . n A 1 226 GLU 226 226 226 GLU GLU P . n A 1 227 ASP 227 227 227 ASP ASP P . n A 1 228 PRO 228 228 228 PRO PRO P . n A 1 229 ARG 229 229 229 ARG ARG P . n A 1 230 VAL 230 230 230 VAL VAL P . n A 1 231 LEU 231 231 231 LEU LEU P . n A 1 232 GLY 232 232 232 GLY GLY P . n A 1 233 LEU 233 233 233 LEU LEU P . n A 1 234 HIS 234 234 234 HIS HIS P . n A 1 235 ASP 235 235 235 ASP ASP P . n A 1 236 LEU 236 236 236 LEU LEU P . n A 1 237 ARG 237 237 237 ARG ARG P . n A 1 238 THR 238 238 238 THR THR P . n A 1 239 ARG 239 239 239 ARG ARG P . n A 1 240 GLN 240 240 240 GLN GLN P . n A 1 241 ALA 241 241 241 ALA ALA P . n A 1 242 GLY 242 242 242 GLY GLY P . n A 1 243 LYS 243 243 243 LYS LYS P . n A 1 244 THR 244 244 244 THR THR P . n A 1 245 VAL 245 245 245 VAL VAL P . n A 1 246 PHE 246 246 246 PHE PHE P . n A 1 247 ILE 247 247 247 ILE ILE P . n A 1 248 GLN 248 248 248 GLN GLN P . n A 1 249 PHE 249 249 249 PHE PHE P . n A 1 250 HIS 250 250 250 HIS HIS P . n A 1 251 LEU 251 251 251 LEU LEU P . n A 1 252 GLU 252 252 252 GLU GLU P . n A 1 253 LEU 253 253 253 LEU LEU P . n A 1 254 ASP 254 254 254 ASP ASP P . n A 1 255 GLY 255 255 255 GLY GLY P . n A 1 256 ASN 256 256 256 ASN ASN P . n A 1 257 LEU 257 257 257 LEU LEU P . n A 1 258 SER 258 258 258 SER SER P . n A 1 259 LEU 259 259 259 LEU LEU P . n A 1 260 ASN 260 260 260 ASN ASN P . n A 1 261 GLU 261 261 261 GLU GLU P . n A 1 262 ALA 262 262 262 ALA ALA P . n A 1 263 HIS 263 263 263 HIS HIS P . n A 1 264 SER 264 264 264 SER SER P . n A 1 265 ILE 265 265 265 ILE ILE P . n A 1 266 THR 266 266 266 THR THR P . n A 1 267 ASP 267 267 267 ASP ASP P . n A 1 268 THR 268 268 268 THR THR P . n A 1 269 THR 269 269 269 THR THR P . n A 1 270 GLY 270 270 270 GLY GLY P . n A 1 271 LEU 271 271 271 LEU LEU P . n A 1 272 ARG 272 272 272 ARG ARG P . n A 1 273 VAL 273 273 273 VAL VAL P . n A 1 274 LYS 274 274 274 LYS LYS P . n A 1 275 ALA 275 275 275 ALA ALA P . n A 1 276 ALA 276 276 276 ALA ALA P . n A 1 277 PHE 277 277 277 PHE PHE P . n A 1 278 GLU 278 278 278 GLU GLU P . n A 1 279 ASP 279 279 279 ASP ASP P . n A 1 280 ALA 280 280 280 ALA ALA P . n A 1 281 GLU 281 281 281 GLU GLU P . n A 1 282 VAL 282 282 282 VAL VAL P . n A 1 283 ILE 283 283 283 ILE ILE P . n A 1 284 ILE 284 284 284 ILE ILE P . n A 1 285 HIS 285 285 285 HIS HIS P . n A 1 286 GLN 286 286 286 GLN GLN P . n A 1 287 ASP 287 287 287 ASP ASP P . n A 1 288 PRO 288 288 288 PRO PRO P . n A 1 289 VAL 289 289 289 VAL VAL P . n A 1 290 GLN 290 290 290 GLN GLN P . n A 1 291 VAL 291 291 291 VAL VAL P . n A 1 292 GLU 292 292 292 GLU GLU P . n A 1 293 PRO 293 293 293 PRO PRO P . n A 1 294 THR 294 294 294 THR THR P . n A 1 295 THR 295 295 295 THR THR P . n A 1 296 GLN 296 296 296 GLN GLN P . n A 1 297 HIS 297 297 ? ? ? P . n A 1 298 HIS 298 298 ? ? ? P . n A 1 299 HIS 299 299 ? ? ? P . n A 1 300 HIS 300 300 ? ? ? P . n A 1 301 HIS 301 301 ? ? ? P . n A 1 302 HIS 302 302 ? ? ? P . n A 1 303 HIS 303 303 ? ? ? P . n A 1 304 HIS 304 304 ? ? ? P . n A 1 305 HIS 305 305 ? ? ? P . n A 1 306 HIS 306 306 ? ? ? P . n B 1 1 MET 1 297 297 MET MET Q . n B 1 2 THR 2 298 298 THR THR Q . n B 1 3 GLN 3 299 299 GLN GLN Q . n B 1 4 THR 4 300 300 THR THR Q . n B 1 5 SER 5 301 301 SER SER Q . n B 1 6 GLN 6 302 302 GLN GLN Q . n B 1 7 TYR 7 303 303 TYR TYR Q . n B 1 8 ASP 8 304 304 ASP ASP Q . n B 1 9 PHE 9 305 305 PHE PHE Q . n B 1 10 TRP 10 306 306 TRP TRP Q . n B 1 11 VAL 11 307 307 VAL VAL Q . n B 1 12 LYS 12 308 308 LYS LYS Q . n B 1 13 LEU 13 309 309 LEU LEU Q . n B 1 14 ALA 14 310 310 ALA ALA Q . n B 1 15 SER 15 311 311 SER SER Q . n B 1 16 ARG 16 312 312 ARG ARG Q . n B 1 17 ALA 17 313 313 ALA ALA Q . n B 1 18 SER 18 314 314 SER SER Q . n B 1 19 VAL 19 315 315 VAL VAL Q . n B 1 20 ALA 20 316 316 ALA ALA Q . n B 1 21 THR 21 317 317 THR THR Q . n B 1 22 ALA 22 318 318 ALA ALA Q . n B 1 23 LEU 23 319 319 LEU LEU Q . n B 1 24 THR 24 320 320 THR THR Q . n B 1 25 LEU 25 321 321 LEU LEU Q . n B 1 26 ILE 26 322 322 ILE ILE Q . n B 1 27 THR 27 323 323 THR THR Q . n B 1 28 ILE 28 324 324 ILE ILE Q . n B 1 29 LYS 29 325 325 LYS LYS Q . n B 1 30 LEU 30 326 326 LEU LEU Q . n B 1 31 LEU 31 327 327 LEU LEU Q . n B 1 32 ALA 32 328 328 ALA ALA Q . n B 1 33 TRP 33 329 329 TRP TRP Q . n B 1 34 LEU 34 330 330 LEU LEU Q . n B 1 35 TYR 35 331 331 TYR TYR Q . n B 1 36 SER 36 332 332 SER SER Q . n B 1 37 GLY 37 333 333 GLY GLY Q . n B 1 38 SER 38 334 334 SER SER Q . n B 1 39 ALA 39 335 335 ALA ALA Q . n B 1 40 SER 40 336 336 SER SER Q . n B 1 41 MET 41 337 337 MET MET Q . n B 1 42 LEU 42 338 338 LEU LEU Q . n B 1 43 ALA 43 339 339 ALA ALA Q . n B 1 44 SER 44 340 340 SER SER Q . n B 1 45 LEU 45 341 341 LEU LEU Q . n B 1 46 THR 46 342 342 THR THR Q . n B 1 47 ASP 47 343 343 ASP ASP Q . n B 1 48 SER 48 344 344 SER SER Q . n B 1 49 PHE 49 345 345 PHE PHE Q . n B 1 50 ALA 50 346 346 ALA ALA Q . n B 1 51 ASP 51 347 347 ASP ASP Q . n B 1 52 THR 52 348 348 THR THR Q . n B 1 53 LEU 53 349 349 LEU LEU Q . n B 1 54 ALA 54 350 350 ALA ALA Q . n B 1 55 SER 55 351 351 SER SER Q . n B 1 56 ILE 56 352 352 ILE ILE Q . n B 1 57 ILE 57 353 353 ILE ILE Q . n B 1 58 ASN 58 354 354 ASN ASN Q . n B 1 59 PHE 59 355 355 PHE PHE Q . n B 1 60 ILE 60 356 356 ILE ILE Q . n B 1 61 ALA 61 357 357 ALA ALA Q . n B 1 62 ILE 62 358 358 ILE ILE Q . n B 1 63 ARG 63 359 359 ARG ARG Q . n B 1 64 TYR 64 360 360 TYR TYR Q . n B 1 65 ALA 65 361 361 ALA ALA Q . n B 1 66 ILE 66 362 362 ILE ILE Q . n B 1 67 VAL 67 363 363 VAL VAL Q . n B 1 68 PRO 68 364 364 PRO PRO Q . n B 1 69 ALA 69 365 365 ALA ALA Q . n B 1 70 ASP 70 366 366 ASP ASP Q . n B 1 71 HIS 71 367 367 HIS HIS Q . n B 1 72 ASP 72 368 368 ASP ASP Q . n B 1 73 HIS 73 369 369 HIS HIS Q . n B 1 74 ARG 74 370 370 ARG ARG Q . n B 1 75 TYR 75 371 371 TYR TYR Q . n B 1 76 GLY 76 372 372 GLY GLY Q . n B 1 77 HIS 77 373 373 HIS HIS Q . n B 1 78 GLY 78 374 374 GLY GLY Q . n B 1 79 LYS 79 375 375 LYS LYS Q . n B 1 80 ALA 80 376 376 ALA ALA Q . n B 1 81 GLU 81 377 377 GLU GLU Q . n B 1 82 PRO 82 378 378 PRO PRO Q . n B 1 83 LEU 83 379 379 LEU LEU Q . n B 1 84 ALA 84 380 380 ALA ALA Q . n B 1 85 ALA 85 381 381 ALA ALA Q . n B 1 86 LEU 86 382 382 LEU LEU Q . n B 1 87 ALA 87 383 383 ALA ALA Q . n B 1 88 GLN 88 384 384 GLN GLN Q . n B 1 89 SER 89 385 385 SER SER Q . n B 1 90 ALA 90 386 386 ALA ALA Q . n B 1 91 PHE 91 387 387 PHE PHE Q . n B 1 92 ILE 92 388 388 ILE ILE Q . n B 1 93 MET 93 389 389 MET MET Q . n B 1 94 GLY 94 390 390 GLY GLY Q . n B 1 95 SER 95 391 391 SER SER Q . n B 1 96 ALA 96 392 392 ALA ALA Q . n B 1 97 PHE 97 393 393 PHE PHE Q . n B 1 98 LEU 98 394 394 LEU LEU Q . n B 1 99 LEU 99 395 395 LEU LEU Q . n B 1 100 LEU 100 396 396 LEU LEU Q . n B 1 101 PHE 101 397 397 PHE PHE Q . n B 1 102 TYR 102 398 398 TYR TYR Q . n B 1 103 GLY 103 399 399 GLY GLY Q . n B 1 104 GLY 104 400 400 GLY GLY Q . n B 1 105 GLU 105 401 401 GLU GLU Q . n B 1 106 ARG 106 402 402 ARG ARG Q . n B 1 107 LEU 107 403 403 LEU LEU Q . n B 1 108 LEU 108 404 404 LEU LEU Q . n B 1 109 ASN 109 405 405 ASN ASN Q . n B 1 110 PRO 110 406 406 PRO PRO Q . n B 1 111 SER 111 407 407 SER SER Q . n B 1 112 PRO 112 408 408 PRO PRO Q . n B 1 113 VAL 113 409 409 VAL VAL Q . n B 1 114 GLU 114 410 410 GLU GLU Q . n B 1 115 ASN 115 411 411 ASN ASN Q . n B 1 116 ALA 116 412 412 ALA ALA Q . n B 1 117 THR 117 413 413 THR THR Q . n B 1 118 LEU 118 414 414 LEU LEU Q . n B 1 119 GLY 119 415 415 GLY GLY Q . n B 1 120 VAL 120 416 416 VAL VAL Q . n B 1 121 VAL 121 417 417 VAL VAL Q . n B 1 122 VAL 122 418 418 VAL VAL Q . n B 1 123 SER 123 419 419 SER SER Q . n B 1 124 VAL 124 420 420 VAL VAL Q . n B 1 125 VAL 125 421 421 VAL VAL Q . n B 1 126 ALA 126 422 422 ALA ALA Q . n B 1 127 ILE 127 423 423 ILE ILE Q . n B 1 128 VAL 128 424 424 VAL VAL Q . n B 1 129 LEU 129 425 425 LEU LEU Q . n B 1 130 THR 130 426 426 THR THR Q . n B 1 131 LEU 131 427 427 LEU LEU Q . n B 1 132 ALA 132 428 428 ALA ALA Q . n B 1 133 LEU 133 429 429 LEU LEU Q . n B 1 134 VAL 134 430 430 VAL VAL Q . n B 1 135 LEU 135 431 431 LEU LEU Q . n B 1 136 LEU 136 432 432 LEU LEU Q . n B 1 137 GLN 137 433 433 GLN GLN Q . n B 1 138 LYS 138 434 434 LYS LYS Q . n B 1 139 ARG 139 435 435 ARG ARG Q . n B 1 140 ALA 140 436 436 ALA ALA Q . n B 1 141 LEU 141 437 437 LEU LEU Q . n B 1 142 ALA 142 438 438 ALA ALA Q . n B 1 143 ALA 143 439 439 ALA ALA Q . n B 1 144 THR 144 440 440 THR THR Q . n B 1 145 ASN 145 441 441 ASN ASN Q . n B 1 146 SER 146 442 442 SER SER Q . n B 1 147 THR 147 443 443 THR THR Q . n B 1 148 VAL 148 444 444 VAL VAL Q . n B 1 149 VAL 149 445 445 VAL VAL Q . n B 1 150 GLU 150 446 446 GLU GLU Q . n B 1 151 ALA 151 447 447 ALA ALA Q . n B 1 152 ASP 152 448 448 ASP ASP Q . n B 1 153 SER 153 449 449 SER SER Q . n B 1 154 LEU 154 450 450 LEU LEU Q . n B 1 155 HIS 155 451 451 HIS HIS Q . n B 1 156 TYR 156 452 452 TYR TYR Q . n B 1 157 LYS 157 453 453 LYS LYS Q . n B 1 158 SER 158 454 454 SER SER Q . n B 1 159 ASP 159 455 455 ASP ASP Q . n B 1 160 LEU 160 456 456 LEU LEU Q . n B 1 161 PHE 161 457 457 PHE PHE Q . n B 1 162 LEU 162 458 458 LEU LEU Q . n B 1 163 ASN 163 459 459 ASN ASN Q . n B 1 164 ALA 164 460 460 ALA ALA Q . n B 1 165 ALA 165 461 461 ALA ALA Q . n B 1 166 VAL 166 462 462 VAL VAL Q . n B 1 167 LEU 167 463 463 LEU LEU Q . n B 1 168 LEU 168 464 464 LEU LEU Q . n B 1 169 ALA 169 465 465 ALA ALA Q . n B 1 170 LEU 170 466 466 LEU LEU Q . n B 1 171 VAL 171 467 467 VAL VAL Q . n B 1 172 LEU 172 468 468 LEU LEU Q . n B 1 173 SER 173 469 469 SER SER Q . n B 1 174 GLN 174 470 470 GLN GLN Q . n B 1 175 TYR 175 471 471 TYR TYR Q . n B 1 176 GLY 176 472 472 GLY GLY Q . n B 1 177 TRP 177 473 473 TRP TRP Q . n B 1 178 TRP 178 474 474 TRP TRP Q . n B 1 179 TRP 179 475 475 TRP TRP Q . n B 1 180 ALA 180 476 476 ALA ALA Q . n B 1 181 ASP 181 477 477 ASP ASP Q . n B 1 182 GLY 182 478 478 GLY GLY Q . n B 1 183 LEU 183 479 479 LEU LEU Q . n B 1 184 PHE 184 480 480 PHE PHE Q . n B 1 185 ALA 185 481 481 ALA ALA Q . n B 1 186 VAL 186 482 482 VAL VAL Q . n B 1 187 LEU 187 483 483 LEU LEU Q . n B 1 188 ILE 188 484 484 ILE ILE Q . n B 1 189 ALA 189 485 485 ALA ALA Q . n B 1 190 CYS 190 486 486 CYS CYS Q . n B 1 191 TYR 191 487 487 TYR TYR Q . n B 1 192 ILE 192 488 488 ILE ILE Q . n B 1 193 GLY 193 489 489 GLY GLY Q . n B 1 194 GLN 194 490 490 GLN GLN Q . n B 1 195 GLN 195 491 491 GLN GLN Q . n B 1 196 ALA 196 492 492 ALA ALA Q . n B 1 197 PHE 197 493 493 PHE PHE Q . n B 1 198 ASP 198 494 494 ASP ASP Q . n B 1 199 LEU 199 495 495 LEU LEU Q . n B 1 200 GLY 200 496 496 GLY GLY Q . n B 1 201 TYR 201 497 497 TYR TYR Q . n B 1 202 ARG 202 498 498 ARG ARG Q . n B 1 203 SER 203 499 499 SER SER Q . n B 1 204 ILE 204 500 500 ILE ILE Q . n B 1 205 GLN 205 501 501 GLN GLN Q . n B 1 206 ALA 206 502 502 ALA ALA Q . n B 1 207 LEU 207 503 503 LEU LEU Q . n B 1 208 LEU 208 504 504 LEU LEU Q . n B 1 209 ASP 209 505 505 ASP ASP Q . n B 1 210 ARG 210 506 506 ARG ARG Q . n B 1 211 GLU 211 507 507 GLU GLU Q . n B 1 212 LEU 212 508 508 LEU LEU Q . n B 1 213 ASP 213 509 509 ASP ASP Q . n B 1 214 GLU 214 510 510 GLU GLU Q . n B 1 215 ASP 215 511 511 ASP ASP Q . n B 1 216 THR 216 512 512 THR THR Q . n B 1 217 ARG 217 513 513 ARG ARG Q . n B 1 218 GLN 218 514 514 GLN GLN Q . n B 1 219 ARG 219 515 515 ARG ARG Q . n B 1 220 ILE 220 516 516 ILE ILE Q . n B 1 221 LYS 221 517 517 LYS LYS Q . n B 1 222 LEU 222 518 518 LEU LEU Q . n B 1 223 ILE 223 519 519 ILE ILE Q . n B 1 224 ALA 224 520 520 ALA ALA Q . n B 1 225 LYS 225 521 521 LYS LYS Q . n B 1 226 GLU 226 522 522 GLU GLU Q . n B 1 227 ASP 227 523 523 ASP ASP Q . n B 1 228 PRO 228 524 524 PRO PRO Q . n B 1 229 ARG 229 525 525 ARG ARG Q . n B 1 230 VAL 230 526 526 VAL VAL Q . n B 1 231 LEU 231 527 527 LEU LEU Q . n B 1 232 GLY 232 528 528 GLY GLY Q . n B 1 233 LEU 233 529 529 LEU LEU Q . n B 1 234 HIS 234 530 530 HIS HIS Q . n B 1 235 ASP 235 531 531 ASP ASP Q . n B 1 236 LEU 236 532 532 LEU LEU Q . n B 1 237 ARG 237 533 533 ARG ARG Q . n B 1 238 THR 238 534 534 THR THR Q . n B 1 239 ARG 239 535 535 ARG ARG Q . n B 1 240 GLN 240 536 536 GLN GLN Q . n B 1 241 ALA 241 537 537 ALA ALA Q . n B 1 242 GLY 242 538 538 GLY GLY Q . n B 1 243 LYS 243 539 539 LYS LYS Q . n B 1 244 THR 244 540 540 THR THR Q . n B 1 245 VAL 245 541 541 VAL VAL Q . n B 1 246 PHE 246 542 542 PHE PHE Q . n B 1 247 ILE 247 543 543 ILE ILE Q . n B 1 248 GLN 248 544 544 GLN GLN Q . n B 1 249 PHE 249 545 545 PHE PHE Q . n B 1 250 HIS 250 546 546 HIS HIS Q . n B 1 251 LEU 251 547 547 LEU LEU Q . n B 1 252 GLU 252 548 548 GLU GLU Q . n B 1 253 LEU 253 549 549 LEU LEU Q . n B 1 254 ASP 254 550 550 ASP ASP Q . n B 1 255 GLY 255 551 551 GLY GLY Q . n B 1 256 ASN 256 552 552 ASN ASN Q . n B 1 257 LEU 257 553 553 LEU LEU Q . n B 1 258 SER 258 554 554 SER SER Q . n B 1 259 LEU 259 555 555 LEU LEU Q . n B 1 260 ASN 260 556 556 ASN ASN Q . n B 1 261 GLU 261 557 557 GLU GLU Q . n B 1 262 ALA 262 558 558 ALA ALA Q . n B 1 263 HIS 263 559 559 HIS HIS Q . n B 1 264 SER 264 560 560 SER SER Q . n B 1 265 ILE 265 561 561 ILE ILE Q . n B 1 266 THR 266 562 562 THR THR Q . n B 1 267 ASP 267 563 563 ASP ASP Q . n B 1 268 THR 268 564 564 THR THR Q . n B 1 269 THR 269 565 565 THR THR Q . n B 1 270 GLY 270 566 566 GLY GLY Q . n B 1 271 LEU 271 567 567 LEU LEU Q . n B 1 272 ARG 272 568 568 ARG ARG Q . n B 1 273 VAL 273 569 569 VAL VAL Q . n B 1 274 LYS 274 570 570 LYS LYS Q . n B 1 275 ALA 275 571 571 ALA ALA Q . n B 1 276 ALA 276 572 572 ALA ALA Q . n B 1 277 PHE 277 573 573 PHE PHE Q . n B 1 278 GLU 278 574 574 GLU GLU Q . n B 1 279 ASP 279 575 575 ASP ASP Q . n B 1 280 ALA 280 576 576 ALA ALA Q . n B 1 281 GLU 281 577 577 GLU GLU Q . n B 1 282 VAL 282 578 578 VAL VAL Q . n B 1 283 ILE 283 579 579 ILE ILE Q . n B 1 284 ILE 284 580 580 ILE ILE Q . n B 1 285 HIS 285 581 581 HIS HIS Q . n B 1 286 GLN 286 582 582 GLN GLN Q . n B 1 287 ASP 287 583 583 ASP ASP Q . n B 1 288 PRO 288 584 584 PRO PRO Q . n B 1 289 VAL 289 585 585 VAL VAL Q . n B 1 290 GLN 290 586 586 GLN GLN Q . n B 1 291 VAL 291 587 587 VAL VAL Q . n B 1 292 GLU 292 588 588 GLU GLU Q . n B 1 293 PRO 293 589 589 PRO PRO Q . n B 1 294 THR 294 590 590 THR THR Q . n B 1 295 THR 295 591 591 THR THR Q . n B 1 296 GLN 296 592 592 GLN GLN Q . n B 1 297 HIS 297 593 ? ? ? Q . n B 1 298 HIS 298 594 ? ? ? Q . n B 1 299 HIS 299 595 ? ? ? Q . n B 1 300 HIS 300 596 ? ? ? Q . n B 1 301 HIS 301 597 ? ? ? Q . n B 1 302 HIS 302 598 ? ? ? Q . n B 1 303 HIS 303 599 ? ? ? Q . n B 1 304 HIS 304 600 ? ? ? Q . n B 1 305 HIS 305 601 ? ? ? Q . n B 1 306 HIS 306 602 ? ? ? Q . n # _cell.entry_id 3J1Z _cell.length_a 1.000 _cell.length_b 1.000 _cell.length_c 1.000 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3J1Z _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 # _exptl.entry_id 3J1Z _exptl.method 'ELECTRON MICROSCOPY' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol ? _exptl_crystal.density_Matthews ? _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _diffrn.id 1 _diffrn.ambient_temp ? _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _refine_hist.pdbx_refine_id 'ELECTRON MICROSCOPY' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 4586 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 0 _refine_hist.number_atoms_total 4586 _refine_hist.d_res_high . _refine_hist.d_res_low . # _database_PDB_matrix.entry_id 3J1Z _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 3J1Z _struct.title 'Inward-Facing Conformation of the Zinc Transporter YiiP revealed by Cryo-electron Microscopy' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3J1Z _struct_keywords.pdbx_keywords 'METAL TRANSPORT' _struct_keywords.text ;zinc transporter, secondary transporter, alternating access mechanism, METAL TRANSPORT, Structural Genomics, PSI-Biology, Transcontinental EM Initiative for Membrane Protein Structure, TEMIMPS ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q8E919_SHEON _struct_ref.pdbx_db_accession Q8E919 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MTQTSQYDFWVKLASRASVATALTLITIKLLAWLYSGSASMLASLTDSFADTLASIINFIAIRYAIVPADHDHRYGHGKA EPLAALAQSAFIMGSAFLLLFYGGERLLNPSPVENATLGVVVSVVAIVLTLALVLLQKRALAATNSTVVEADSLHYKSDL FLNAAVLLALVLSQYGWWWADGLFAVLIACYIGQQAFDLGYRSIQALLDRELDEDTRQRIKLIAKEDPRVLGLHDLRTRQ AGKTVFIQFHLELDGNLSLNEAHSITDTTGLRVKAAFEDAEVIIHQDPVQVEPTTQ ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3J1Z P 1 ? 296 ? Q8E919 1 ? 296 ? 1 296 2 1 3J1Z Q 1 ? 296 ? Q8E919 1 ? 296 ? 297 592 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3J1Z HIS P 297 ? UNP Q8E919 ? ? 'expression tag' 297 1 1 3J1Z HIS P 298 ? UNP Q8E919 ? ? 'expression tag' 298 2 1 3J1Z HIS P 299 ? UNP Q8E919 ? ? 'expression tag' 299 3 1 3J1Z HIS P 300 ? UNP Q8E919 ? ? 'expression tag' 300 4 1 3J1Z HIS P 301 ? UNP Q8E919 ? ? 'expression tag' 301 5 1 3J1Z HIS P 302 ? UNP Q8E919 ? ? 'expression tag' 302 6 1 3J1Z HIS P 303 ? UNP Q8E919 ? ? 'expression tag' 303 7 1 3J1Z HIS P 304 ? UNP Q8E919 ? ? 'expression tag' 304 8 1 3J1Z HIS P 305 ? UNP Q8E919 ? ? 'expression tag' 305 9 1 3J1Z HIS P 306 ? UNP Q8E919 ? ? 'expression tag' 306 10 2 3J1Z HIS Q 297 ? UNP Q8E919 ? ? 'expression tag' 593 11 2 3J1Z HIS Q 298 ? UNP Q8E919 ? ? 'expression tag' 594 12 2 3J1Z HIS Q 299 ? UNP Q8E919 ? ? 'expression tag' 595 13 2 3J1Z HIS Q 300 ? UNP Q8E919 ? ? 'expression tag' 596 14 2 3J1Z HIS Q 301 ? UNP Q8E919 ? ? 'expression tag' 597 15 2 3J1Z HIS Q 302 ? UNP Q8E919 ? ? 'expression tag' 598 16 2 3J1Z HIS Q 303 ? UNP Q8E919 ? ? 'expression tag' 599 17 2 3J1Z HIS Q 304 ? UNP Q8E919 ? ? 'expression tag' 600 18 2 3J1Z HIS Q 305 ? UNP Q8E919 ? ? 'expression tag' 601 19 2 3J1Z HIS Q 306 ? UNP Q8E919 ? ? 'expression tag' 602 20 # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 'representative helical assembly' ? 36-meric 36 2 'helical asymmetric unit' ? dimeric 2 3 'helical asymmetric unit, std helical frame' ? dimeric 2 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 '(1-18)' A,B 2 10 A,B 3 H A,B # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] H 'transform to helical frame' ? ? 1.00000000 0.00000000 0.00000000 0.00000 0.00000000 0.00000000 -1.00000000 0.00000 0.00000000 1.00000000 0.00000000 0.00000 1 'helical symmetry operation' ? ? -0.98228725 0.00000000 -0.18738131 0.00000 0.00000000 1.00000000 0.00000000 -51.30000 0.18738131 0.00000000 -0.98228725 0.00000 2 'helical symmetry operation' ? ? 0.65342060 0.00000000 -0.75699506 0.00000 0.00000000 1.00000000 0.00000000 -51.30000 0.75699506 0.00000000 0.65342060 0.00000 3 'helical symmetry operation' ? ? 0.32886665 0.00000000 0.94437637 0.00000 0.00000000 1.00000000 0.00000000 -51.30000 -0.94437637 0.00000000 0.32886665 0.00000 4 'helical symmetry operation' ? ? -0.38751559 0.00000000 -0.92186315 0.00000 0.00000000 1.00000000 0.00000000 -34.20000 0.92186315 0.00000000 -0.38751559 0.00000 5 'helical symmetry operation' ? ? 0.99211470 0.00000000 0.12533323 0.00000 0.00000000 1.00000000 0.00000000 -34.20000 -0.12533323 0.00000000 0.99211470 0.00000 6 'helical symmetry operation' ? ? -0.60459911 0.00000000 0.79652992 0.00000 0.00000000 1.00000000 0.00000000 -34.20000 -0.79652992 0.00000000 -0.60459911 0.00000 7 'helical symmetry operation' ? ? 0.55339155 0.00000000 -0.83292124 0.00000 0.00000000 1.00000000 0.00000000 -17.10000 0.83292124 0.00000000 0.55339155 0.00000 8 'helical symmetry operation' ? ? 0.44463518 0.00000000 0.89571176 0.00000 0.00000000 1.00000000 0.00000000 -17.10000 -0.89571176 0.00000000 0.44463518 0.00000 9 'helical symmetry operation' ? ? -0.99802673 0.00000000 -0.06279052 0.00000 0.00000000 1.00000000 0.00000000 -17.10000 0.06279052 0.00000000 -0.99802673 0.00000 10 'identity operation' 1_555 x,y,z 1.00000000 0.00000000 0.00000000 0.00000 0.00000000 1.00000000 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 0.00000 11 'helical symmetry operation' ? ? -0.50000000 0.00000000 0.86602540 0.00000 0.00000000 1.00000000 0.00000000 0.00000 -0.86602540 0.00000000 -0.50000000 0.00000 12 'helical symmetry operation' ? ? -0.50000000 0.00000000 -0.86602540 0.00000 0.00000000 1.00000000 0.00000000 0.00000 0.86602540 0.00000000 -0.50000000 0.00000 13 'helical symmetry operation' ? ? 0.55339155 0.00000000 0.83292124 0.00000 0.00000000 1.00000000 0.00000000 17.10000 -0.83292124 0.00000000 0.55339155 0.00000 14 'helical symmetry operation' ? ? -0.99802673 0.00000000 0.06279052 0.00000 0.00000000 1.00000000 0.00000000 17.10000 -0.06279052 0.00000000 -0.99802673 0.00000 15 'helical symmetry operation' ? ? 0.44463518 0.00000000 -0.89571176 0.00000 0.00000000 1.00000000 0.00000000 17.10000 0.89571176 0.00000000 0.44463518 0.00000 16 'helical symmetry operation' ? ? -0.38751559 0.00000000 0.92186315 0.00000 0.00000000 1.00000000 0.00000000 34.20000 -0.92186315 0.00000000 -0.38751559 0.00000 17 'helical symmetry operation' ? ? -0.60459911 0.00000000 -0.79652992 0.00000 0.00000000 1.00000000 0.00000000 34.20000 0.79652992 0.00000000 -0.60459911 0.00000 18 'helical symmetry operation' ? ? 0.99211470 0.00000000 -0.12533323 0.00000 0.00000000 1.00000000 0.00000000 34.20000 0.12533323 0.00000000 0.99211470 0.00000 # _struct_biol.id 1 _struct_biol.details 'THE SYMMETRY OF THE HELIX IS D3.' # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ALA A 14 ? ILE A 26 ? ALA P 14 ILE P 26 1 ? 13 HELX_P HELX_P2 2 ILE A 26 ? ALA A 32 ? ILE P 26 ALA P 32 1 ? 7 HELX_P HELX_P3 3 ALA A 43 ? SER A 48 ? ALA P 43 SER P 48 1 ? 6 HELX_P HELX_P4 4 PHE A 49 ? ILE A 66 ? PHE P 49 ILE P 66 1 ? 18 HELX_P HELX_P5 5 LYS A 79 ? ARG A 106 ? LYS P 79 ARG P 106 1 ? 28 HELX_P HELX_P6 6 GLY A 119 ? ALA A 142 ? GLY P 119 ALA P 142 1 ? 24 HELX_P HELX_P7 7 SER A 146 ? LEU A 160 ? SER P 146 LEU P 160 1 ? 15 HELX_P HELX_P8 8 ALA A 180 ? LEU A 208 ? ALA P 180 LEU P 208 1 ? 29 HELX_P HELX_P9 9 ASP A 213 ? ASP A 227 ? ASP P 213 ASP P 227 1 ? 15 HELX_P HELX_P10 10 SER A 258 ? PHE A 277 ? SER P 258 PHE P 277 1 ? 20 HELX_P HELX_P11 11 ALA B 14 ? LEU B 25 ? ALA Q 310 LEU Q 321 1 ? 12 HELX_P HELX_P12 12 LEU B 25 ? LEU B 31 ? LEU Q 321 LEU Q 327 1 ? 7 HELX_P HELX_P13 13 LEU B 42 ? ASP B 47 ? LEU Q 338 ASP Q 343 1 ? 6 HELX_P HELX_P14 14 ASP B 47 ? VAL B 67 ? ASP Q 343 VAL Q 363 1 ? 21 HELX_P HELX_P15 15 GLY B 76 ? GLY B 78 ? GLY Q 372 GLY Q 374 5 ? 3 HELX_P HELX_P16 16 LYS B 79 ? ARG B 106 ? LYS Q 375 ARG Q 402 1 ? 28 HELX_P HELX_P17 17 VAL B 120 ? THR B 144 ? VAL Q 416 THR Q 440 1 ? 25 HELX_P HELX_P18 18 GLU B 150 ? PHE B 161 ? GLU Q 446 PHE Q 457 1 ? 12 HELX_P HELX_P19 19 ASP B 181 ? LEU B 208 ? ASP Q 477 LEU Q 504 1 ? 28 HELX_P HELX_P20 20 GLU B 214 ? ALA B 224 ? GLU Q 510 ALA Q 520 1 ? 11 HELX_P HELX_P21 21 SER B 258 ? PHE B 277 ? SER Q 554 PHE Q 573 1 ? 20 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 3 ? B ? 2 ? C ? 3 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? parallel B 1 2 ? parallel C 1 2 ? anti-parallel C 2 3 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ARG A 239 ? ALA A 241 ? ARG P 239 ALA P 241 A 2 THR A 244 ? PHE A 249 ? THR P 244 PHE P 249 A 3 GLU A 281 ? ILE A 284 ? GLU P 281 ILE P 284 B 1 GLU A 252 ? LEU A 253 ? GLU P 252 LEU P 253 B 2 ASP A 287 ? PRO A 288 ? ASP P 287 PRO P 288 C 1 ARG B 237 ? GLN B 240 ? ARG Q 533 GLN Q 536 C 2 VAL B 245 ? PHE B 249 ? VAL Q 541 PHE Q 545 C 3 GLU B 281 ? ILE B 284 ? GLU Q 577 ILE Q 580 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N ARG A 239 ? N ARG P 239 O PHE A 246 ? O PHE P 246 A 2 3 N ILE A 247 ? N ILE P 247 O GLU A 281 ? O GLU P 281 B 1 2 N LEU A 253 ? N LEU P 253 O ASP A 287 ? O ASP P 287 C 1 2 N ARG B 239 ? N ARG Q 535 O PHE B 246 ? O PHE Q 542 C 2 3 N ILE B 247 ? N ILE Q 543 O GLU B 281 ? O GLU Q 577 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 CB P PHE 59 ? ? CG P PHE 59 ? ? CD2 P PHE 59 ? ? 116.51 120.80 -4.29 0.70 N 2 1 CB P PHE 59 ? ? CG P PHE 59 ? ? CD1 P PHE 59 ? ? 125.25 120.80 4.45 0.70 N 3 1 NE P ARG 219 ? ? CZ P ARG 219 ? ? NH1 P ARG 219 ? ? 124.16 120.30 3.86 0.50 N 4 1 NE P ARG 239 ? ? CZ P ARG 239 ? ? NH1 P ARG 239 ? ? 123.71 120.30 3.41 0.50 N 5 1 NE P ARG 272 ? ? CZ P ARG 272 ? ? NH1 P ARG 272 ? ? 123.48 120.30 3.18 0.50 N 6 1 NE Q ARG 402 ? ? CZ Q ARG 402 ? ? NH1 Q ARG 402 ? ? 124.12 120.30 3.82 0.50 N 7 1 NE Q ARG 506 ? ? CZ Q ARG 506 ? ? NH2 Q ARG 506 ? ? 116.53 120.30 -3.77 0.50 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 TYR P 7 ? ? 85.57 -71.90 2 1 PHE P 9 ? ? 54.57 -118.99 3 1 VAL P 11 ? ? -63.63 79.60 4 1 ILE P 26 ? ? -56.50 -7.77 5 1 ALA P 32 ? ? -65.12 11.45 6 1 ASP P 51 ? ? -28.27 -83.04 7 1 ASP P 70 ? ? -46.69 164.86 8 1 HIS P 71 ? ? -148.32 11.59 9 1 ARG P 74 ? ? 67.82 -22.29 10 1 HIS P 77 ? ? -80.17 42.04 11 1 LEU P 108 ? ? 93.31 -17.41 12 1 PRO P 112 ? ? -72.42 -169.62 13 1 THR P 117 ? ? -164.32 -11.63 14 1 LEU P 118 ? ? 72.82 120.19 15 1 THR P 144 ? ? 173.36 94.48 16 1 LEU P 160 ? ? -56.12 -5.03 17 1 VAL P 171 ? ? 50.77 -162.54 18 1 LEU P 172 ? ? -32.91 135.12 19 1 TRP P 178 ? ? 67.62 -24.63 20 1 TRP P 179 ? ? 80.62 104.18 21 1 ASP P 213 ? ? -53.59 173.21 22 1 LEU P 233 ? ? 117.94 86.56 23 1 ARG P 237 ? ? -89.57 41.71 24 1 ALA P 241 ? ? -163.91 114.24 25 1 ILE P 247 ? ? -101.91 77.87 26 1 LEU P 251 ? ? -162.08 106.81 27 1 SER Q 301 ? ? -30.06 155.90 28 1 TYR Q 303 ? ? -152.04 15.91 29 1 ASP Q 304 ? ? 39.31 174.38 30 1 PHE Q 305 ? ? 55.27 75.81 31 1 LYS Q 308 ? ? -145.90 16.60 32 1 ASP Q 366 ? ? -92.07 -103.80 33 1 ARG Q 370 ? ? -4.86 -85.44 34 1 HIS Q 373 ? ? -37.40 -22.30 35 1 LEU Q 404 ? ? 67.61 -13.94 36 1 SER Q 407 ? ? 142.45 150.28 37 1 THR Q 413 ? ? 47.63 -146.73 38 1 VAL Q 416 ? ? -36.40 -24.03 39 1 VAL Q 445 ? ? -162.74 -9.85 40 1 LEU Q 463 ? ? -78.43 -146.57 41 1 ALA Q 465 ? ? -141.84 11.03 42 1 LEU Q 466 ? ? -145.30 -64.68 43 1 ASP Q 505 ? ? -87.23 41.73 44 1 ASP Q 509 ? ? -53.29 -169.67 45 1 ALA Q 520 ? ? -80.51 36.06 46 1 LYS Q 521 ? ? -149.71 17.49 47 1 LEU Q 529 ? ? 69.38 66.57 48 1 LEU Q 532 ? ? -172.74 85.04 49 1 LYS Q 539 ? ? -127.12 -95.85 50 1 THR Q 540 ? ? 3.84 107.21 51 1 ASP Q 550 ? ? -34.81 132.57 # loop_ _pdbx_validate_peptide_omega.id _pdbx_validate_peptide_omega.PDB_model_num _pdbx_validate_peptide_omega.auth_comp_id_1 _pdbx_validate_peptide_omega.auth_asym_id_1 _pdbx_validate_peptide_omega.auth_seq_id_1 _pdbx_validate_peptide_omega.PDB_ins_code_1 _pdbx_validate_peptide_omega.label_alt_id_1 _pdbx_validate_peptide_omega.auth_comp_id_2 _pdbx_validate_peptide_omega.auth_asym_id_2 _pdbx_validate_peptide_omega.auth_seq_id_2 _pdbx_validate_peptide_omega.PDB_ins_code_2 _pdbx_validate_peptide_omega.label_alt_id_2 _pdbx_validate_peptide_omega.omega 1 1 LEU P 170 ? ? VAL P 171 ? ? -135.53 2 1 SER P 173 ? ? GLN P 174 ? ? -140.53 3 1 ALA P 280 ? ? GLU P 281 ? ? 144.60 4 1 THR Q 298 ? ? GLN Q 299 ? ? -149.63 5 1 ASP Q 531 ? ? LEU Q 532 ? ? 142.48 # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 TYR P 102 ? ? 0.094 'SIDE CHAIN' 2 1 ARG P 139 ? ? 0.171 'SIDE CHAIN' 3 1 TYR P 191 ? ? 0.072 'SIDE CHAIN' 4 1 ARG P 210 ? ? 0.187 'SIDE CHAIN' 5 1 ARG P 217 ? ? 0.141 'SIDE CHAIN' 6 1 ARG P 219 ? ? 0.107 'SIDE CHAIN' 7 1 ARG P 237 ? ? 0.083 'SIDE CHAIN' 8 1 ARG P 239 ? ? 0.086 'SIDE CHAIN' 9 1 ARG P 272 ? ? 0.165 'SIDE CHAIN' 10 1 ARG Q 312 ? ? 0.088 'SIDE CHAIN' 11 1 HIS Q 373 ? ? 0.105 'SIDE CHAIN' 12 1 ARG Q 435 ? ? 0.198 'SIDE CHAIN' 13 1 TYR Q 452 ? ? 0.143 'SIDE CHAIN' 14 1 ARG Q 506 ? ? 0.167 'SIDE CHAIN' 15 1 ARG Q 535 ? ? 0.089 'SIDE CHAIN' # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name PSI:Biology _pdbx_SG_project.full_name_of_center 'Transcontinental EM Initiative for Membrane Protein Structure' _pdbx_SG_project.initial_of_center TEMIMPS # _pdbx_helical_symmetry.entry_id 3J1Z _pdbx_helical_symmetry.number_of_operations 18 _pdbx_helical_symmetry.rotation_per_n_subunits 56.4 _pdbx_helical_symmetry.rise_per_n_subunits 17.1 _pdbx_helical_symmetry.n_subunits_divisor 1 _pdbx_helical_symmetry.dyad_axis no _pdbx_helical_symmetry.circular_symmetry 3 # _em_3d_fitting.id 1 _em_3d_fitting.entry_id 3J1Z _em_3d_fitting.ref_protocol 'FLEXIBLE FIT' _em_3d_fitting.ref_space REAL _em_3d_fitting.overall_b_value ? _em_3d_fitting.target_criteria ? _em_3d_fitting.details ;METHOD--MDFF DETAILS--An initial homology model of YiiP from S. oneidensis was built with MODELLER 9v7 using the X-ray crystal structure of YiiP from E. coli (PDB entry 3H90) as a template. This model included 9 residues at the N-terminus and 4 residues at the C-terminus that were not present in the X-ray structure. Initial configurations were obtained by manually placing the symmetry axis of the homology model onto the symmetry axis of the electron density map and aligning the protein C-terminal domains to the corresponding densities. In the first step of the MDFF fitting, harmonic potentials were applied to (a) the four-helix bundle formed by helices M1, M2, M4, and M5 (residues 12-32, 42-65, 119-142, and 147-165, respectively), (b) the M3 and M6 helices at the dimeric interface (residues 78-108 and 179-211, respectively), and (c) the C-terminal intracellular domain (residues 212-297). ; _em_3d_fitting.method ? # _em_3d_fitting_list.3d_fitting_id 1 _em_3d_fitting_list.id 1 _em_3d_fitting_list.pdb_entry_id 3H90 _em_3d_fitting_list.pdb_chain_id ? _em_3d_fitting_list.details ? _em_3d_fitting_list.initial_refinement_model_id 1 _em_3d_fitting_list.chain_id ? _em_3d_fitting_list.chain_residue_range ? _em_3d_fitting_list.pdb_chain_residue_range ? _em_3d_fitting_list.source_name PDB _em_3d_fitting_list.type 'experimental model' _em_3d_fitting_list.accession_code 3H90 # _em_3d_reconstruction.entry_id 3J1Z _em_3d_reconstruction.id 1 _em_3d_reconstruction.symmetry_type HELICAL _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.method IHRSR _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size 2.735 _em_3d_reconstruction.resolution 13 _em_3d_reconstruction.magnification_calibration ? _em_3d_reconstruction.details 'CRYSTAL CELL PARAMETERS WERE A=57.5, B=34.0, C=100.0, ALPHA=90, BETA=90, GAMMA=85.3.' _em_3d_reconstruction.resolution_method ? _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.num_particles ? _em_3d_reconstruction.algorithm ? # _em_buffer.id 1 _em_buffer.specimen_id 1 _em_buffer.name '20mM TES, 5mM MgCl2, 100mM NaCl, 5mM NaN3' _em_buffer.pH 7 _em_buffer.details '20mM TES, 5mM MgCl2, 100mM NaCl, 5mM NaN3' # _em_entity_assembly.id 1 _em_entity_assembly.name 'YiiP from Shewanella oneidensis in DOPG lipids' _em_entity_assembly.type COMPLEX _em_entity_assembly.parent_id 0 _em_entity_assembly.synonym ? _em_entity_assembly.details ? _em_entity_assembly.oligomeric_details ? # _em_image_scans.entry_id 3J1Z _em_image_scans.id 1 _em_image_scans.image_recording_id 1 _em_image_scans.number_digital_images 19 _em_image_scans.citation_id ? _em_image_scans.od_range ? _em_image_scans.quant_bit_size ? _em_image_scans.sampling_size ? _em_image_scans.scanner_model ? _em_image_scans.details ? # _em_imaging.entry_id 3J1Z _em_imaging.id 1 _em_imaging.mode 'BRIGHT FIELD' _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.specimen_id 1 _em_imaging.date 2009-02-10 _em_imaging.temperature 100 _em_imaging.microscope_model 'FEI TECNAI F20' _em_imaging.nominal_defocus_min 1600 _em_imaging.nominal_defocus_max 3000 _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.nominal_cs 2.1 _em_imaging.nominal_magnification 50000 _em_imaging.calibrated_magnification 51190 _em_imaging.accelerating_voltage 200 _em_imaging.details ? _em_imaging.specimen_holder_type ? _em_imaging.specimen_holder_model ? _em_imaging.citation_id ? _em_imaging.detector_distance ? _em_imaging.recording_temperature_maximum ? _em_imaging.recording_temperature_minimum ? _em_imaging.astigmatism ? _em_imaging.electron_beam_tilt_params ? # _em_sample_support.id 1 _em_sample_support.specimen_id 1 _em_sample_support.details 'holey carbon grid' _em_sample_support.film_material ? _em_sample_support.grid_material ? _em_sample_support.grid_mesh_size ? _em_sample_support.grid_type ? _em_sample_support.method ? # _em_vitrification.entry_id 3J1Z _em_vitrification.id 1 _em_vitrification.instrument 'GATAN CRYOPLUNGE 3' _em_vitrification.details 'Blot for 2-5 seconds before plunging into liquid ethane (Gatan cryoplunger)' _em_vitrification.citation_id ? _em_vitrification.cryogen_name ETHANE _em_vitrification.humidity ? _em_vitrification.method 'Blot for 2-5 seconds before plunging' _em_vitrification.specimen_id 1 _em_vitrification.temp 100 _em_vitrification.time_resolved_state ? # _em_experiment.entry_id 3J1Z _em_experiment.id 1 _em_experiment.aggregation_state '2D ARRAY' _em_experiment.entity_assembly_id 1 _em_experiment.reconstruction_method HELICAL # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 P HIS 297 ? A HIS 297 2 1 Y 1 P HIS 298 ? A HIS 298 3 1 Y 1 P HIS 299 ? A HIS 299 4 1 Y 1 P HIS 300 ? A HIS 300 5 1 Y 1 P HIS 301 ? A HIS 301 6 1 Y 1 P HIS 302 ? A HIS 302 7 1 Y 1 P HIS 303 ? A HIS 303 8 1 Y 1 P HIS 304 ? A HIS 304 9 1 Y 1 P HIS 305 ? A HIS 305 10 1 Y 1 P HIS 306 ? A HIS 306 11 1 Y 1 Q HIS 593 ? B HIS 297 12 1 Y 1 Q HIS 594 ? B HIS 298 13 1 Y 1 Q HIS 595 ? B HIS 299 14 1 Y 1 Q HIS 596 ? B HIS 300 15 1 Y 1 Q HIS 597 ? B HIS 301 16 1 Y 1 Q HIS 598 ? B HIS 302 17 1 Y 1 Q HIS 599 ? B HIS 303 18 1 Y 1 Q HIS 600 ? B HIS 304 19 1 Y 1 Q HIS 601 ? B HIS 305 20 1 Y 1 Q HIS 602 ? B HIS 306 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 GLN N N N N 88 GLN CA C N S 89 GLN C C N N 90 GLN O O N N 91 GLN CB C N N 92 GLN CG C N N 93 GLN CD C N N 94 GLN OE1 O N N 95 GLN NE2 N N N 96 GLN OXT O N N 97 GLN H H N N 98 GLN H2 H N N 99 GLN HA H N N 100 GLN HB2 H N N 101 GLN HB3 H N N 102 GLN HG2 H N N 103 GLN HG3 H N N 104 GLN HE21 H N N 105 GLN HE22 H N N 106 GLN HXT H N N 107 GLU N N N N 108 GLU CA C N S 109 GLU C C N N 110 GLU O O N N 111 GLU CB C N N 112 GLU CG C N N 113 GLU CD C N N 114 GLU OE1 O N N 115 GLU OE2 O N N 116 GLU OXT O N N 117 GLU H H N N 118 GLU H2 H N N 119 GLU HA H N N 120 GLU HB2 H N N 121 GLU HB3 H N N 122 GLU HG2 H N N 123 GLU HG3 H N N 124 GLU HE2 H N N 125 GLU HXT H N N 126 GLY N N N N 127 GLY CA C N N 128 GLY C C N N 129 GLY O O N N 130 GLY OXT O N N 131 GLY H H N N 132 GLY H2 H N N 133 GLY HA2 H N N 134 GLY HA3 H N N 135 GLY HXT H N N 136 HIS N N N N 137 HIS CA C N S 138 HIS C C N N 139 HIS O O N N 140 HIS CB C N N 141 HIS CG C Y N 142 HIS ND1 N Y N 143 HIS CD2 C Y N 144 HIS CE1 C Y N 145 HIS NE2 N Y N 146 HIS OXT O N N 147 HIS H H N N 148 HIS H2 H N N 149 HIS HA H N N 150 HIS HB2 H N N 151 HIS HB3 H N N 152 HIS HD1 H N N 153 HIS HD2 H N N 154 HIS HE1 H N N 155 HIS HE2 H N N 156 HIS HXT H N N 157 ILE N N N N 158 ILE CA C N S 159 ILE C C N N 160 ILE O O N N 161 ILE CB C N S 162 ILE CG1 C N N 163 ILE CG2 C N N 164 ILE CD1 C N N 165 ILE OXT O N N 166 ILE H H N N 167 ILE H2 H N N 168 ILE HA H N N 169 ILE HB H N N 170 ILE HG12 H N N 171 ILE HG13 H N N 172 ILE HG21 H N N 173 ILE HG22 H N N 174 ILE HG23 H N N 175 ILE HD11 H N N 176 ILE HD12 H N N 177 ILE HD13 H N N 178 ILE HXT H N N 179 LEU N N N N 180 LEU CA C N S 181 LEU C C N N 182 LEU O O N N 183 LEU CB C N N 184 LEU CG C N N 185 LEU CD1 C N N 186 LEU CD2 C N N 187 LEU OXT O N N 188 LEU H H N N 189 LEU H2 H N N 190 LEU HA H N N 191 LEU HB2 H N N 192 LEU HB3 H N N 193 LEU HG H N N 194 LEU HD11 H N N 195 LEU HD12 H N N 196 LEU HD13 H N N 197 LEU HD21 H N N 198 LEU HD22 H N N 199 LEU HD23 H N N 200 LEU HXT H N N 201 LYS N N N N 202 LYS CA C N S 203 LYS C C N N 204 LYS O O N N 205 LYS CB C N N 206 LYS CG C N N 207 LYS CD C N N 208 LYS CE C N N 209 LYS NZ N N N 210 LYS OXT O N N 211 LYS H H N N 212 LYS H2 H N N 213 LYS HA H N N 214 LYS HB2 H N N 215 LYS HB3 H N N 216 LYS HG2 H N N 217 LYS HG3 H N N 218 LYS HD2 H N N 219 LYS HD3 H N N 220 LYS HE2 H N N 221 LYS HE3 H N N 222 LYS HZ1 H N N 223 LYS HZ2 H N N 224 LYS HZ3 H N N 225 LYS HXT H N N 226 MET N N N N 227 MET CA C N S 228 MET C C N N 229 MET O O N N 230 MET CB C N N 231 MET CG C N N 232 MET SD S N N 233 MET CE C N N 234 MET OXT O N N 235 MET H H N N 236 MET H2 H N N 237 MET HA H N N 238 MET HB2 H N N 239 MET HB3 H N N 240 MET HG2 H N N 241 MET HG3 H N N 242 MET HE1 H N N 243 MET HE2 H N N 244 MET HE3 H N N 245 MET HXT H N N 246 PHE N N N N 247 PHE CA C N S 248 PHE C C N N 249 PHE O O N N 250 PHE CB C N N 251 PHE CG C Y N 252 PHE CD1 C Y N 253 PHE CD2 C Y N 254 PHE CE1 C Y N 255 PHE CE2 C Y N 256 PHE CZ C Y N 257 PHE OXT O N N 258 PHE H H N N 259 PHE H2 H N N 260 PHE HA H N N 261 PHE HB2 H N N 262 PHE HB3 H N N 263 PHE HD1 H N N 264 PHE HD2 H N N 265 PHE HE1 H N N 266 PHE HE2 H N N 267 PHE HZ H N N 268 PHE HXT H N N 269 PRO N N N N 270 PRO CA C N S 271 PRO C C N N 272 PRO O O N N 273 PRO CB C N N 274 PRO CG C N N 275 PRO CD C N N 276 PRO OXT O N N 277 PRO H H N N 278 PRO HA H N N 279 PRO HB2 H N N 280 PRO HB3 H N N 281 PRO HG2 H N N 282 PRO HG3 H N N 283 PRO HD2 H N N 284 PRO HD3 H N N 285 PRO HXT H N N 286 SER N N N N 287 SER CA C N S 288 SER C C N N 289 SER O O N N 290 SER CB C N N 291 SER OG O N N 292 SER OXT O N N 293 SER H H N N 294 SER H2 H N N 295 SER HA H N N 296 SER HB2 H N N 297 SER HB3 H N N 298 SER HG H N N 299 SER HXT H N N 300 THR N N N N 301 THR CA C N S 302 THR C C N N 303 THR O O N N 304 THR CB C N R 305 THR OG1 O N N 306 THR CG2 C N N 307 THR OXT O N N 308 THR H H N N 309 THR H2 H N N 310 THR HA H N N 311 THR HB H N N 312 THR HG1 H N N 313 THR HG21 H N N 314 THR HG22 H N N 315 THR HG23 H N N 316 THR HXT H N N 317 TRP N N N N 318 TRP CA C N S 319 TRP C C N N 320 TRP O O N N 321 TRP CB C N N 322 TRP CG C Y N 323 TRP CD1 C Y N 324 TRP CD2 C Y N 325 TRP NE1 N Y N 326 TRP CE2 C Y N 327 TRP CE3 C Y N 328 TRP CZ2 C Y N 329 TRP CZ3 C Y N 330 TRP CH2 C Y N 331 TRP OXT O N N 332 TRP H H N N 333 TRP H2 H N N 334 TRP HA H N N 335 TRP HB2 H N N 336 TRP HB3 H N N 337 TRP HD1 H N N 338 TRP HE1 H N N 339 TRP HE3 H N N 340 TRP HZ2 H N N 341 TRP HZ3 H N N 342 TRP HH2 H N N 343 TRP HXT H N N 344 TYR N N N N 345 TYR CA C N S 346 TYR C C N N 347 TYR O O N N 348 TYR CB C N N 349 TYR CG C Y N 350 TYR CD1 C Y N 351 TYR CD2 C Y N 352 TYR CE1 C Y N 353 TYR CE2 C Y N 354 TYR CZ C Y N 355 TYR OH O N N 356 TYR OXT O N N 357 TYR H H N N 358 TYR H2 H N N 359 TYR HA H N N 360 TYR HB2 H N N 361 TYR HB3 H N N 362 TYR HD1 H N N 363 TYR HD2 H N N 364 TYR HE1 H N N 365 TYR HE2 H N N 366 TYR HH H N N 367 TYR HXT H N N 368 VAL N N N N 369 VAL CA C N S 370 VAL C C N N 371 VAL O O N N 372 VAL CB C N N 373 VAL CG1 C N N 374 VAL CG2 C N N 375 VAL OXT O N N 376 VAL H H N N 377 VAL H2 H N N 378 VAL HA H N N 379 VAL HB H N N 380 VAL HG11 H N N 381 VAL HG12 H N N 382 VAL HG13 H N N 383 VAL HG21 H N N 384 VAL HG22 H N N 385 VAL HG23 H N N 386 VAL HXT H N N 387 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLN N CA sing N N 83 GLN N H sing N N 84 GLN N H2 sing N N 85 GLN CA C sing N N 86 GLN CA CB sing N N 87 GLN CA HA sing N N 88 GLN C O doub N N 89 GLN C OXT sing N N 90 GLN CB CG sing N N 91 GLN CB HB2 sing N N 92 GLN CB HB3 sing N N 93 GLN CG CD sing N N 94 GLN CG HG2 sing N N 95 GLN CG HG3 sing N N 96 GLN CD OE1 doub N N 97 GLN CD NE2 sing N N 98 GLN NE2 HE21 sing N N 99 GLN NE2 HE22 sing N N 100 GLN OXT HXT sing N N 101 GLU N CA sing N N 102 GLU N H sing N N 103 GLU N H2 sing N N 104 GLU CA C sing N N 105 GLU CA CB sing N N 106 GLU CA HA sing N N 107 GLU C O doub N N 108 GLU C OXT sing N N 109 GLU CB CG sing N N 110 GLU CB HB2 sing N N 111 GLU CB HB3 sing N N 112 GLU CG CD sing N N 113 GLU CG HG2 sing N N 114 GLU CG HG3 sing N N 115 GLU CD OE1 doub N N 116 GLU CD OE2 sing N N 117 GLU OE2 HE2 sing N N 118 GLU OXT HXT sing N N 119 GLY N CA sing N N 120 GLY N H sing N N 121 GLY N H2 sing N N 122 GLY CA C sing N N 123 GLY CA HA2 sing N N 124 GLY CA HA3 sing N N 125 GLY C O doub N N 126 GLY C OXT sing N N 127 GLY OXT HXT sing N N 128 HIS N CA sing N N 129 HIS N H sing N N 130 HIS N H2 sing N N 131 HIS CA C sing N N 132 HIS CA CB sing N N 133 HIS CA HA sing N N 134 HIS C O doub N N 135 HIS C OXT sing N N 136 HIS CB CG sing N N 137 HIS CB HB2 sing N N 138 HIS CB HB3 sing N N 139 HIS CG ND1 sing Y N 140 HIS CG CD2 doub Y N 141 HIS ND1 CE1 doub Y N 142 HIS ND1 HD1 sing N N 143 HIS CD2 NE2 sing Y N 144 HIS CD2 HD2 sing N N 145 HIS CE1 NE2 sing Y N 146 HIS CE1 HE1 sing N N 147 HIS NE2 HE2 sing N N 148 HIS OXT HXT sing N N 149 ILE N CA sing N N 150 ILE N H sing N N 151 ILE N H2 sing N N 152 ILE CA C sing N N 153 ILE CA CB sing N N 154 ILE CA HA sing N N 155 ILE C O doub N N 156 ILE C OXT sing N N 157 ILE CB CG1 sing N N 158 ILE CB CG2 sing N N 159 ILE CB HB sing N N 160 ILE CG1 CD1 sing N N 161 ILE CG1 HG12 sing N N 162 ILE CG1 HG13 sing N N 163 ILE CG2 HG21 sing N N 164 ILE CG2 HG22 sing N N 165 ILE CG2 HG23 sing N N 166 ILE CD1 HD11 sing N N 167 ILE CD1 HD12 sing N N 168 ILE CD1 HD13 sing N N 169 ILE OXT HXT sing N N 170 LEU N CA sing N N 171 LEU N H sing N N 172 LEU N H2 sing N N 173 LEU CA C sing N N 174 LEU CA CB sing N N 175 LEU CA HA sing N N 176 LEU C O doub N N 177 LEU C OXT sing N N 178 LEU CB CG sing N N 179 LEU CB HB2 sing N N 180 LEU CB HB3 sing N N 181 LEU CG CD1 sing N N 182 LEU CG CD2 sing N N 183 LEU CG HG sing N N 184 LEU CD1 HD11 sing N N 185 LEU CD1 HD12 sing N N 186 LEU CD1 HD13 sing N N 187 LEU CD2 HD21 sing N N 188 LEU CD2 HD22 sing N N 189 LEU CD2 HD23 sing N N 190 LEU OXT HXT sing N N 191 LYS N CA sing N N 192 LYS N H sing N N 193 LYS N H2 sing N N 194 LYS CA C sing N N 195 LYS CA CB sing N N 196 LYS CA HA sing N N 197 LYS C O doub N N 198 LYS C OXT sing N N 199 LYS CB CG sing N N 200 LYS CB HB2 sing N N 201 LYS CB HB3 sing N N 202 LYS CG CD sing N N 203 LYS CG HG2 sing N N 204 LYS CG HG3 sing N N 205 LYS CD CE sing N N 206 LYS CD HD2 sing N N 207 LYS CD HD3 sing N N 208 LYS CE NZ sing N N 209 LYS CE HE2 sing N N 210 LYS CE HE3 sing N N 211 LYS NZ HZ1 sing N N 212 LYS NZ HZ2 sing N N 213 LYS NZ HZ3 sing N N 214 LYS OXT HXT sing N N 215 MET N CA sing N N 216 MET N H sing N N 217 MET N H2 sing N N 218 MET CA C sing N N 219 MET CA CB sing N N 220 MET CA HA sing N N 221 MET C O doub N N 222 MET C OXT sing N N 223 MET CB CG sing N N 224 MET CB HB2 sing N N 225 MET CB HB3 sing N N 226 MET CG SD sing N N 227 MET CG HG2 sing N N 228 MET CG HG3 sing N N 229 MET SD CE sing N N 230 MET CE HE1 sing N N 231 MET CE HE2 sing N N 232 MET CE HE3 sing N N 233 MET OXT HXT sing N N 234 PHE N CA sing N N 235 PHE N H sing N N 236 PHE N H2 sing N N 237 PHE CA C sing N N 238 PHE CA CB sing N N 239 PHE CA HA sing N N 240 PHE C O doub N N 241 PHE C OXT sing N N 242 PHE CB CG sing N N 243 PHE CB HB2 sing N N 244 PHE CB HB3 sing N N 245 PHE CG CD1 doub Y N 246 PHE CG CD2 sing Y N 247 PHE CD1 CE1 sing Y N 248 PHE CD1 HD1 sing N N 249 PHE CD2 CE2 doub Y N 250 PHE CD2 HD2 sing N N 251 PHE CE1 CZ doub Y N 252 PHE CE1 HE1 sing N N 253 PHE CE2 CZ sing Y N 254 PHE CE2 HE2 sing N N 255 PHE CZ HZ sing N N 256 PHE OXT HXT sing N N 257 PRO N CA sing N N 258 PRO N CD sing N N 259 PRO N H sing N N 260 PRO CA C sing N N 261 PRO CA CB sing N N 262 PRO CA HA sing N N 263 PRO C O doub N N 264 PRO C OXT sing N N 265 PRO CB CG sing N N 266 PRO CB HB2 sing N N 267 PRO CB HB3 sing N N 268 PRO CG CD sing N N 269 PRO CG HG2 sing N N 270 PRO CG HG3 sing N N 271 PRO CD HD2 sing N N 272 PRO CD HD3 sing N N 273 PRO OXT HXT sing N N 274 SER N CA sing N N 275 SER N H sing N N 276 SER N H2 sing N N 277 SER CA C sing N N 278 SER CA CB sing N N 279 SER CA HA sing N N 280 SER C O doub N N 281 SER C OXT sing N N 282 SER CB OG sing N N 283 SER CB HB2 sing N N 284 SER CB HB3 sing N N 285 SER OG HG sing N N 286 SER OXT HXT sing N N 287 THR N CA sing N N 288 THR N H sing N N 289 THR N H2 sing N N 290 THR CA C sing N N 291 THR CA CB sing N N 292 THR CA HA sing N N 293 THR C O doub N N 294 THR C OXT sing N N 295 THR CB OG1 sing N N 296 THR CB CG2 sing N N 297 THR CB HB sing N N 298 THR OG1 HG1 sing N N 299 THR CG2 HG21 sing N N 300 THR CG2 HG22 sing N N 301 THR CG2 HG23 sing N N 302 THR OXT HXT sing N N 303 TRP N CA sing N N 304 TRP N H sing N N 305 TRP N H2 sing N N 306 TRP CA C sing N N 307 TRP CA CB sing N N 308 TRP CA HA sing N N 309 TRP C O doub N N 310 TRP C OXT sing N N 311 TRP CB CG sing N N 312 TRP CB HB2 sing N N 313 TRP CB HB3 sing N N 314 TRP CG CD1 doub Y N 315 TRP CG CD2 sing Y N 316 TRP CD1 NE1 sing Y N 317 TRP CD1 HD1 sing N N 318 TRP CD2 CE2 doub Y N 319 TRP CD2 CE3 sing Y N 320 TRP NE1 CE2 sing Y N 321 TRP NE1 HE1 sing N N 322 TRP CE2 CZ2 sing Y N 323 TRP CE3 CZ3 doub Y N 324 TRP CE3 HE3 sing N N 325 TRP CZ2 CH2 doub Y N 326 TRP CZ2 HZ2 sing N N 327 TRP CZ3 CH2 sing Y N 328 TRP CZ3 HZ3 sing N N 329 TRP CH2 HH2 sing N N 330 TRP OXT HXT sing N N 331 TYR N CA sing N N 332 TYR N H sing N N 333 TYR N H2 sing N N 334 TYR CA C sing N N 335 TYR CA CB sing N N 336 TYR CA HA sing N N 337 TYR C O doub N N 338 TYR C OXT sing N N 339 TYR CB CG sing N N 340 TYR CB HB2 sing N N 341 TYR CB HB3 sing N N 342 TYR CG CD1 doub Y N 343 TYR CG CD2 sing Y N 344 TYR CD1 CE1 sing Y N 345 TYR CD1 HD1 sing N N 346 TYR CD2 CE2 doub Y N 347 TYR CD2 HD2 sing N N 348 TYR CE1 CZ doub Y N 349 TYR CE1 HE1 sing N N 350 TYR CE2 CZ sing Y N 351 TYR CE2 HE2 sing N N 352 TYR CZ OH sing N N 353 TYR OH HH sing N N 354 TYR OXT HXT sing N N 355 VAL N CA sing N N 356 VAL N H sing N N 357 VAL N H2 sing N N 358 VAL CA C sing N N 359 VAL CA CB sing N N 360 VAL CA HA sing N N 361 VAL C O doub N N 362 VAL C OXT sing N N 363 VAL CB CG1 sing N N 364 VAL CB CG2 sing N N 365 VAL CB HB sing N N 366 VAL CG1 HG11 sing N N 367 VAL CG1 HG12 sing N N 368 VAL CG1 HG13 sing N N 369 VAL CG2 HG21 sing N N 370 VAL CG2 HG22 sing N N 371 VAL CG2 HG23 sing N N 372 VAL OXT HXT sing N N 373 # _em_ctf_correction.id 1 _em_ctf_correction.details 'Corrected throughout the reconstruction cycle' _em_ctf_correction.type . # _em_helical_entity.id 1 _em_helical_entity.image_processing_id 1 _em_helical_entity.angular_rotation_per_subunit 56.4 _em_helical_entity.axial_rise_per_subunit 17.1 _em_helical_entity.axial_symmetry D3 _em_helical_entity.details ? # _em_image_processing.id 1 _em_image_processing.image_recording_id 1 _em_image_processing.details ? # _em_image_recording.avg_electron_dose_per_image 10 _em_image_recording.details 'Kodak SO163 film' _em_image_recording.id 1 _em_image_recording.film_or_detector_model 'GENERIC FILM' _em_image_recording.imaging_id 1 _em_image_recording.detector_mode ? _em_image_recording.average_exposure_time ? _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged ? _em_image_recording.num_real_images ? # loop_ _em_software.id _em_software.name _em_software.version _em_software.category _em_software.details _em_software.image_processing_id 1 EMIP ? RECONSTRUCTION ? 1 2 SPARX ? RECONSTRUCTION ? 1 # _em_specimen.experiment_id 1 _em_specimen.id 1 _em_specimen.concentration 0.5 _em_specimen.vitrification_applied YES _em_specimen.staining_applied NO _em_specimen.embedding_applied NO _em_specimen.shadowing_applied NO _em_specimen.details ? # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 3H90 # _atom_sites.entry_id 3J1Z _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_