HEADER RIBOSOME 25-OCT-12 3J2L OBSLTE 10-DEC-14 3J2L 4V6U TITLE PROMISCUOUS BEHAVIOR OF PROTEINS IN ARCHAEAL RIBOSOMES REVEALED BY TITLE 2 CRYO-EM: IMPLICATIONS FOR EVOLUTION OF EUKARYOTIC RIBOSOMES (50S TITLE 3 RIBOSOMAL RNA) SPLIT 3J20 3J21 3J2L COMPND MOL_ID: 1; COMPND 2 MOLECULE: 23S RRNA; COMPND 3 CHAIN: 1; COMPND 4 MOL_ID: 2; COMPND 5 MOLECULE: 5S RRNA; COMPND 6 CHAIN: 3 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PYROCOCCUS FURIOSUS; SOURCE 3 ORGANISM_TAXID: 186497; SOURCE 4 STRAIN: ATCC 43587 / DSM 3638 / JCM 8422 / VC1; SOURCE 5 MOL_ID: 2; SOURCE 6 ORGANISM_SCIENTIFIC: PYROCOCCUS FURIOSUS; SOURCE 7 ORGANISM_TAXID: 186497; SOURCE 8 STRAIN: ATCC 43587 / DSM 3638 / JCM 8422 / VC1 KEYWDS ARCHAEA, ARCHAEAL, RIBOSOMAL, 70S, KINK-TURN, PROTEIN SYNTHESIS, RNA, KEYWDS 2 RIBOSOME EXPDTA ELECTRON MICROSCOPY AUTHOR J.-P.ARMACHE,A.M.ANGER,V.MARQUEZ,S.FRANKENBERG,T.FROEHLICH,E.VILLA, AUTHOR 2 O.BERNINGHAUSEN,M.THOMM,G.J.ARNOLD,R.BECKMANN,D.N.WILSON REVDAT 4 10-DEC-14 3J2L 1 OBSLTE REVDAT 3 06-FEB-13 3J2L 1 JRNL REVDAT 2 26-DEC-12 3J2L 1 JRNL REVDAT 1 28-NOV-12 3J2L 0 JRNL AUTH J.P.ARMACHE,A.M.ANGER,V.MARQUEZ,S.FRANCKENBERG,T.FROHLICH, JRNL AUTH 2 E.VILLA,O.BERNINGHAUSEN,M.THOMM,G.J.ARNOLD,R.BECKMANN, JRNL AUTH 3 D.N.WILSON JRNL TITL PROMISCUOUS BEHAVIOUR OF ARCHAEAL RIBOSOMAL PROTEINS: JRNL TITL 2 IMPLICATIONS FOR EUKARYOTIC RIBOSOME EVOLUTION. JRNL REF NUCLEIC ACIDS RES. V. 41 1284 2013 JRNL REFN ISSN 0305-1048 JRNL PMID 23222135 JRNL DOI 10.1093/NAR/GKS1259 REMARK 2 REMARK 2 RESOLUTION. 6.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : NULL REMARK 3 RECONSTRUCTION SCHEMA : SINGLE PARTICLE REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : NULL REMARK 3 REFINEMENT PROTOCOL : NULL REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : 1.240 REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : 1.240 REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 6.600 REMARK 3 NUMBER OF PARTICLES : NULL REMARK 3 CTF CORRECTION METHOD : WIENER FILTER REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: SORTING FOR RIBOSOME CONFORMATION AND LIGAND REMARK 3 PRESENCE WAS PERFORMED REMARK 4 REMARK 4 3J2L COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 5 REMARK 5 THIS ENTRY WITH OTHER SPLIT ENTRIES HAVE BEEN CONSOLIDATED INTO A REMARK 5 COMBINED FILE FOR COMPLETE REPRESENTATION. NO COORDINATES HAVE BEEN REMARK 5 CHANGED. REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-NOV-12. REMARK 100 THE RCSB ID CODE IS RCSB160171. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : VITREOUS ICE (CRYO EM) REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : ASYMMETRIC REMARK 245 NAME OF SAMPLE : PYROCOCCUS FURIOSUS 70S RIBOSOME REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : NULL REMARK 245 SAMPLE SUPPORT DETAILS : QUANTIFOIL GRIDS (3/3) WITH 2 REMARK 245 NM CARBON ON TOP REMARK 245 SAMPLE VITRIFICATION DETAILS : BLOT FOR 10 SECONDS BEFORE REMARK 245 PLUNGING INTO LIQUID ETHANE, REMARK 245 USING 2 LAYERS OF FILTER PAPER REMARK 245 (FEI VITROBOT) REMARK 245 SAMPLE BUFFER : 56 MM TRIS PH 8.2, 250 MM KOAC, REMARK 245 80 MM NH4OAC, 50 MM MGCL2, 1 MM REMARK 245 DTT, 2 MM ADPNP REMARK 245 PH : 8.20 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TITAN KRIOS REMARK 245 DETECTOR TYPE : TEMCAM-F416 CMOS CAMERA REMARK 245 MINIMUM DEFOCUS (NM) : 1200.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 3600.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : 2.70 REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 25.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : 75000 REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 200 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: 1, 3 REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 U 12063 C4' O4' C3' O3' C2' O2' C1' REMARK 470 U 12063 N1 C2 O2 N3 C4 O4 C5 REMARK 470 U 12063 C6 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OP2 C 3 1 C8 G 3 2 1.57 REMARK 500 OP2 C 3 1 N9 G 3 2 1.80 REMARK 500 C6 A 1 1568 N6 A 1 1569 1.97 REMARK 500 O6 G 1 1179 N4 C 1 1254 1.99 REMARK 500 N4 C 1 309 O6 G 1 403 2.01 REMARK 500 N1 A 1 1568 N1 A 1 1569 2.02 REMARK 500 C2 A 1 1568 N1 A 1 1569 2.08 REMARK 500 O6 G 1 85 N4 C 1 97 2.09 REMARK 500 O6 G 1 2976 N4 C 1 3027 2.15 REMARK 500 N4 C 1 2217 O6 G 1 2318 2.16 REMARK 500 N6 A 1 1465 O2 C 1 1476 2.17 REMARK 500 O6 G 1 2227 N4 C 1 2308 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 G 1 1 P G 1 1 OP1 -0.485 REMARK 500 G 1 1 P G 1 1 OP2 -0.486 REMARK 500 G 1 1 C5' G 1 1 C4' 0.079 REMARK 500 G 1 2 C2' G 1 2 C1' -0.072 REMARK 500 G 1 3 P G 1 3 O5' -0.071 REMARK 500 C 1 4 C2' C 1 4 C1' -0.093 REMARK 500 C 1 10 C2' C 1 10 C1' 0.093 REMARK 500 C 1 12 O4' C 1 12 C1' 0.159 REMARK 500 A 1 14 C2' A 1 14 C1' -0.077 REMARK 500 A 1 14 O4' A 1 14 C1' 0.258 REMARK 500 C 1 17 O4' C 1 17 C1' 0.115 REMARK 500 C 1 18 C2' C 1 18 C1' 0.107 REMARK 500 C 1 18 O4' C 1 18 C1' 0.113 REMARK 500 G 1 19 C2' G 1 19 C1' 0.069 REMARK 500 C 1 20 C4' C 1 20 C3' 0.086 REMARK 500 C 1 20 O4' C 1 20 C1' 0.079 REMARK 500 C 1 21 C4' C 1 21 C3' -0.066 REMARK 500 C 1 21 C2' C 1 21 C1' -0.055 REMARK 500 C 1 21 O4' C 1 21 C1' 0.133 REMARK 500 C 1 22 O4' C 1 22 C1' 0.106 REMARK 500 G 1 24 O4' G 1 24 C1' 0.080 REMARK 500 G 1 26 C2' G 1 26 C1' -0.074 REMARK 500 U 1 25 O3' G 1 26 P -0.076 REMARK 500 G 1 27 C4' G 1 27 C3' 0.082 REMARK 500 G 1 27 C3' G 1 27 C2' -0.079 REMARK 500 A 1 28 C3' A 1 28 C2' 0.081 REMARK 500 A 1 28 C2' A 1 28 C1' 0.069 REMARK 500 U 1 29 C2' U 1 29 C1' -0.065 REMARK 500 U 1 29 O4' U 1 29 C1' 0.108 REMARK 500 G 1 30 C3' G 1 30 C2' -0.074 REMARK 500 G 1 30 C2' G 1 30 C1' -0.127 REMARK 500 G 1 31 C2' G 1 31 C1' -0.063 REMARK 500 G 1 31 O4' G 1 31 C1' -0.103 REMARK 500 C 1 32 C2' C 1 32 C1' -0.156 REMARK 500 C 1 32 O4' C 1 32 C1' 0.169 REMARK 500 U 1 33 C2' U 1 33 C1' -0.114 REMARK 500 U 1 33 O4' U 1 33 C1' 0.138 REMARK 500 C 1 34 C2' C 1 34 C1' 0.102 REMARK 500 G 1 35 C4' G 1 35 C3' 0.066 REMARK 500 G 1 35 C2' G 1 35 C1' -0.071 REMARK 500 G 1 35 O4' G 1 35 C1' 0.072 REMARK 500 C 1 34 O3' G 1 35 P -0.093 REMARK 500 G 1 36 C5' G 1 36 C4' 0.082 REMARK 500 C 1 37 C2' C 1 37 C1' -0.100 REMARK 500 C 1 37 O4' C 1 37 C1' 0.126 REMARK 500 U 1 38 C2' U 1 38 C1' -0.075 REMARK 500 C 1 39 O4' C 1 39 C1' 0.172 REMARK 500 G 1 40 C2' G 1 40 C1' -0.088 REMARK 500 G 1 41 C5' G 1 41 C4' 0.083 REMARK 500 G 1 40 O3' G 1 41 P -0.077 REMARK 500 REMARK 500 THIS ENTRY HAS 4941 BOND DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 G 1 1 O5' - P - OP1 ANGL. DEV. = 9.2 DEGREES REMARK 500 G 1 1 O5' - P - OP2 ANGL. DEV. = 9.3 DEGREES REMARK 500 G 1 1 C5' - C4' - O4' ANGL. DEV. = 6.2 DEGREES REMARK 500 G 1 1 O4' - C1' - N9 ANGL. DEV. = 5.3 DEGREES REMARK 500 G 1 2 O4' - C1' - N9 ANGL. DEV. = 8.4 DEGREES REMARK 500 G 1 2 O3' - P - OP2 ANGL. DEV. = 7.4 DEGREES REMARK 500 G 1 3 O4' - C1' - N9 ANGL. DEV. = 11.4 DEGREES REMARK 500 A 1 6 C3' - C2' - C1' ANGL. DEV. = -4.5 DEGREES REMARK 500 A 1 6 O4' - C1' - N9 ANGL. DEV. = 14.9 DEGREES REMARK 500 G 1 7 N1 - C6 - O6 ANGL. DEV. = 5.7 DEGREES REMARK 500 G 1 7 C5 - C6 - O6 ANGL. DEV. = -4.6 DEGREES REMARK 500 G 1 8 N1 - C6 - O6 ANGL. DEV. = 5.7 DEGREES REMARK 500 G 1 8 C5 - C6 - O6 ANGL. DEV. = -4.3 DEGREES REMARK 500 A 1 9 O4' - C1' - N9 ANGL. DEV. = 5.9 DEGREES REMARK 500 A 1 9 N1 - C6 - N6 ANGL. DEV. = 7.1 DEGREES REMARK 500 C 1 10 O4' - C1' - N1 ANGL. DEV. = 7.5 DEGREES REMARK 500 G 1 11 O4' - C1' - N9 ANGL. DEV. = 5.4 DEGREES REMARK 500 C 1 12 C3' - C2' - C1' ANGL. DEV. = 6.5 DEGREES REMARK 500 C 1 12 O4' - C1' - C2' ANGL. DEV. = -6.3 DEGREES REMARK 500 U 1 13 C5' - C4' - C3' ANGL. DEV. = 12.3 DEGREES REMARK 500 U 1 13 O4' - C1' - N1 ANGL. DEV. = 6.7 DEGREES REMARK 500 C 1 12 C3' - O3' - P ANGL. DEV. = 14.7 DEGREES REMARK 500 A 1 14 C3' - C2' - C1' ANGL. DEV. = 9.9 DEGREES REMARK 500 A 1 14 O4' - C1' - C2' ANGL. DEV. = -9.3 DEGREES REMARK 500 A 1 15 O4' - C1' - N9 ANGL. DEV. = 4.5 DEGREES REMARK 500 G 1 16 OP1 - P - OP2 ANGL. DEV. = -9.8 DEGREES REMARK 500 G 1 16 O4' - C1' - N9 ANGL. DEV. = 7.6 DEGREES REMARK 500 C 1 17 O4' - C1' - C2' ANGL. DEV. = -6.4 DEGREES REMARK 500 C 1 17 O4' - C1' - N1 ANGL. DEV. = 4.5 DEGREES REMARK 500 C 1 18 C1' - O4' - C4' ANGL. DEV. = 7.3 DEGREES REMARK 500 C 1 18 O4' - C1' - C2' ANGL. DEV. = -9.5 DEGREES REMARK 500 C 1 18 O4' - C1' - N1 ANGL. DEV. = 8.4 DEGREES REMARK 500 G 1 19 C5' - C4' - O4' ANGL. DEV. = 5.5 DEGREES REMARK 500 G 1 19 O4' - C1' - N9 ANGL. DEV. = 12.5 DEGREES REMARK 500 C 1 18 C3' - O3' - P ANGL. DEV. = -7.6 DEGREES REMARK 500 C 1 20 C3' - C2' - C1' ANGL. DEV. = 7.2 DEGREES REMARK 500 C 1 21 C1' - O4' - C4' ANGL. DEV. = -4.4 DEGREES REMARK 500 C 1 22 O4' - C1' - C2' ANGL. DEV. = -7.3 DEGREES REMARK 500 C 1 22 O4' - C1' - N1 ANGL. DEV. = 5.0 DEGREES REMARK 500 G 1 23 O4' - C1' - N9 ANGL. DEV. = 6.5 DEGREES REMARK 500 G 1 24 C3' - C2' - C1' ANGL. DEV. = 7.0 DEGREES REMARK 500 U 1 25 O4' - C1' - N1 ANGL. DEV. = 8.1 DEGREES REMARK 500 U 1 25 C3' - O3' - P ANGL. DEV. = 7.9 DEGREES REMARK 500 G 1 27 C1' - O4' - C4' ANGL. DEV. = 6.4 DEGREES REMARK 500 A 1 28 O4' - C1' - N9 ANGL. DEV. = 5.6 DEGREES REMARK 500 A 1 28 C3' - O3' - P ANGL. DEV. = -7.8 DEGREES REMARK 500 G 1 30 C1' - O4' - C4' ANGL. DEV. = -4.4 DEGREES REMARK 500 G 1 31 C3' - C2' - C1' ANGL. DEV. = -4.4 DEGREES REMARK 500 G 1 31 O4' - C1' - N9 ANGL. DEV. = 4.4 DEGREES REMARK 500 C 1 32 C1' - O4' - C4' ANGL. DEV. = -4.6 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 5606 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 G 1 8 0.07 SIDE CHAIN REMARK 500 G 1 45 0.12 SIDE CHAIN REMARK 500 G 1 331 0.07 SIDE CHAIN REMARK 500 U 11008 0.07 SIDE CHAIN REMARK 500 G 11009 0.06 SIDE CHAIN REMARK 500 G 11659 0.18 SIDE CHAIN REMARK 500 G 11775 0.08 SIDE CHAIN REMARK 500 U 11777 0.08 SIDE CHAIN REMARK 500 A 11881 0.07 SIDE CHAIN REMARK 500 U 11917 0.07 SIDE CHAIN REMARK 500 A 11919 0.19 SIDE CHAIN REMARK 500 A 12165 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 G 1 42 -16.9 D D OUTSIDE RANGE REMARK 500 C 1 44 -24.6 D D OUTSIDE RANGE REMARK 500 G 1 48 -50.3 D D OUTSIDE RANGE REMARK 500 C 1 50 -51.0 D D OUTSIDE RANGE REMARK 500 G 1 58 -14.7 D D OUTSIDE RANGE REMARK 500 G 1 61 -22.1 D D OUTSIDE RANGE REMARK 500 C 1 78 -23.4 D D OUTSIDE RANGE REMARK 500 C 1 82 -15.6 D D OUTSIDE RANGE REMARK 500 A 1 84 -23.1 D D OUTSIDE RANGE REMARK 500 G 1 92 -23.5 D D OUTSIDE RANGE REMARK 500 A 1 94 -53.3 D D OUTSIDE RANGE REMARK 500 A 1 110 -45.0 D D OUTSIDE RANGE REMARK 500 C 1 115 -23.2 D D OUTSIDE RANGE REMARK 500 G 1 116 -23.9 D D OUTSIDE RANGE REMARK 500 G 1 120 -20.0 D D OUTSIDE RANGE REMARK 500 C 1 125 -24.9 D D OUTSIDE RANGE REMARK 500 A 1 137 -46.1 D D OUTSIDE RANGE REMARK 500 G 1 152 -45.0 D D OUTSIDE RANGE REMARK 500 A 1 156 -22.2 D D OUTSIDE RANGE REMARK 500 G 1 162 -22.2 D D OUTSIDE RANGE REMARK 500 G 1 165 -17.6 D D OUTSIDE RANGE REMARK 500 G 1 166 -23.4 D D OUTSIDE RANGE REMARK 500 G 1 168 -21.2 D D OUTSIDE RANGE REMARK 500 G 1 177 -22.5 D D OUTSIDE RANGE REMARK 500 A 1 179 -24.0 D D OUTSIDE RANGE REMARK 500 U 1 181 -53.3 D D OUTSIDE RANGE REMARK 500 U 1 182 -23.6 D D OUTSIDE RANGE REMARK 500 A 1 184 -45.0 D D OUTSIDE RANGE REMARK 500 A 1 185 -24.3 D D OUTSIDE RANGE REMARK 500 C 1 187 -20.8 D D OUTSIDE RANGE REMARK 500 G 1 194 -46.9 D D OUTSIDE RANGE REMARK 500 A 1 216 -45.9 D D OUTSIDE RANGE REMARK 500 G 1 219 -45.3 D D OUTSIDE RANGE REMARK 500 G 1 229 -24.6 D D OUTSIDE RANGE REMARK 500 G 1 237 -52.9 D D OUTSIDE RANGE REMARK 500 G 1 239 -18.3 D D OUTSIDE RANGE REMARK 500 C 1 241 -13.2 D D OUTSIDE RANGE REMARK 500 A 1 246 -45.6 D D OUTSIDE RANGE REMARK 500 G 1 249 -24.9 D D OUTSIDE RANGE REMARK 500 C 1 251 -22.3 D D OUTSIDE RANGE REMARK 500 C 1 258 -17.2 D D OUTSIDE RANGE REMARK 500 A 1 266 -19.1 D D OUTSIDE RANGE REMARK 500 C 1 278 -20.2 D D OUTSIDE RANGE REMARK 500 G 1 293 -47.8 D D OUTSIDE RANGE REMARK 500 C 1 311 -45.7 D D OUTSIDE RANGE REMARK 500 G 1 318 -16.7 D D OUTSIDE RANGE REMARK 500 C 1 324 -51.4 D D OUTSIDE RANGE REMARK 500 C 1 335 -22.2 D D OUTSIDE RANGE REMARK 500 G 1 344 -24.1 D D OUTSIDE RANGE REMARK 500 G 1 347 -21.7 D D OUTSIDE RANGE REMARK 500 REMARK 500 THIS ENTRY HAS 508 CHIRALITY DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-2009 RELATED DB: EMDB REMARK 900 RELATED ID: 4V6U RELATED DB: PDB DBREF 3J2L 1 1 3049 PDB 3J2L 3J2L 1 3049 DBREF 3J2L 3 1 126 PDB 3J2L 3J2L 1 126 SEQRES 1 1 3049 G G G C U A G G A C G C U SEQRES 2 1 3049 A A G C C G C C C G G U G SEQRES 3 1 3049 G A U G G C U C G G C U C SEQRES 4 1 3049 G G G G C G C C G A C G A SEQRES 5 1 3049 A G G G C G U G G C A A G SEQRES 6 1 3049 C U G C G A U A A G C C C SEQRES 7 1 3049 C G G C G A G G C G C A G SEQRES 8 1 3049 G C A G C C G U C G A A C SEQRES 9 1 3049 C G G G G A U U C C C G A SEQRES 10 1 3049 A U G G G A C C U C C C G SEQRES 11 1 3049 C G G C U U A U G C C G C SEQRES 12 1 3049 A C U C C G G G G U U U A SEQRES 13 1 3049 U C C C C G G A G G G G G SEQRES 14 1 3049 A A C G C G G G G A A U U SEQRES 15 1 3049 G A A A C A U C U U A G U SEQRES 16 1 3049 A C C C G C A G G A A A A SEQRES 17 1 3049 G A A A G C A A A A G C G SEQRES 18 1 3049 A U G C C G U G A G U A G SEQRES 19 1 3049 G G G C G A C C G A A A A SEQRES 20 1 3049 C G G C A G A G G G C A A SEQRES 21 1 3049 A C U G A A C C C C G G G SEQRES 22 1 3049 C C G A C G A G G U U C G SEQRES 23 1 3049 G G G G A U G U G G G G U SEQRES 24 1 3049 U G U A G G G C C C C C G SEQRES 25 1 3049 U A U G A G A C C C U C G SEQRES 26 1 3049 C G G G U G A A G C C G A SEQRES 27 1 3049 A G U C C G C U G G A A C SEQRES 28 1 3049 G C G G C G C C G G A G A SEQRES 29 1 3049 G G G U G A U A G C C C C SEQRES 30 1 3049 G U A G G C G U A A G C C SEQRES 31 1 3049 C G C A G G G U C U C G G SEQRES 32 1 3049 G G G A C C C U G A G U A SEQRES 33 1 3049 C C G U C G G U U G G A U SEQRES 34 1 3049 A U C C G G C G G G A A G SEQRES 35 1 3049 C U G G G A G G C A U C G SEQRES 36 1 3049 G C U C C C A A C C C U A SEQRES 37 1 3049 A A U A C G U C C C G A G SEQRES 38 1 3049 A C C G A U A G C G A A C SEQRES 39 1 3049 U A G U A C C G U G A G G SEQRES 40 1 3049 G A A A G C U G A A A A G SEQRES 41 1 3049 C A C C C C G G G A G G G SEQRES 42 1 3049 G G G U G A A A A G A G C SEQRES 43 1 3049 C U G A A A C C G G G C G SEQRES 44 1 3049 G C G A U A G G A G G G U SEQRES 45 1 3049 G C G G C C C G A A A G G SEQRES 46 1 3049 A A U G A G C C U C C C C SEQRES 47 1 3049 G A A G G A A A C C G C G SEQRES 48 1 3049 G C G A C G C G G G A G U SEQRES 49 1 3049 A C G A G G G G A G G G G SEQRES 50 1 3049 A C C G G G G U U G C A C SEQRES 51 1 3049 C G U C C G U C U U G A A SEQRES 52 1 3049 A C A C G G G G C A G G G SEQRES 53 1 3049 A G U U C G C G G C C G U SEQRES 54 1 3049 G G C G A G G U U A A G G SEQRES 55 1 3049 G G G U U A A G C C C C G SEQRES 56 1 3049 U A G C C G C A G G G A A SEQRES 57 1 3049 A C C G A C A U G C C C G SEQRES 58 1 3049 C A G C C G G G C U U A U SEQRES 59 1 3049 G C C C G G U G A G G G G SEQRES 60 1 3049 C G G G G U G C G A A A G SEQRES 61 1 3049 C G C C C G G A G U C A C SEQRES 62 1 3049 G G C C G C G A G A C C C SEQRES 63 1 3049 G A A A C C G G U C G A U SEQRES 64 1 3049 C U A G C C C G G G G C A SEQRES 65 1 3049 G G G U G A A G U C C C U SEQRES 66 1 3049 C A A C C G A G G G A U G SEQRES 67 1 3049 G A G G C C C G C U A G G SEQRES 68 1 3049 G G U G C U G A U G U G C SEQRES 69 1 3049 A G U U C G C U C C C G U SEQRES 70 1 3049 G A C C C C G G G C U A G SEQRES 71 1 3049 G G G U G A A A G G C C A SEQRES 72 1 3049 A U C G A G G C C G G A G SEQRES 73 1 3049 A U A G C U G G U U C C C SEQRES 74 1 3049 G C C G A A U C A U C C C SEQRES 75 1 3049 G C A G G A U G G C C U C SEQRES 76 1 3049 C C C G G A G G U A G G C SEQRES 77 1 3049 G G U G G G G U A G A G C SEQRES 78 1 3049 A C U G A U U G G A G G U SEQRES 79 1 3049 G C A G G G G G C G A A A SEQRES 80 1 3049 G C C C C C G G C C U C C SEQRES 81 1 3049 U G U C A A A C U C C G A SEQRES 82 1 3049 A C C C A C C G C C G C C SEQRES 83 1 3049 G U A G A U G G G G G G A SEQRES 84 1 3049 G U A G G G U G G C G G U SEQRES 85 1 3049 G U A A G C C G U C C A C SEQRES 86 1 3049 C G A G A G G G G A A C A SEQRES 87 1 3049 A C C C A G A C C G G G G SEQRES 88 1 3049 U U A A G G C C C C A A A SEQRES 89 1 3049 G U G C C G G C U A A G U SEQRES 90 1 3049 G U U A C U C C A A A G G SEQRES 91 1 3049 G U G U C C C G G G C C U SEQRES 92 1 3049 U A G A C A G C G G G G A SEQRES 93 1 3049 G G U A G G C U U A G A A SEQRES 94 1 3049 G C A G C C A U C C U U U SEQRES 95 1 3049 A A A G A G U G C G U A A SEQRES 96 1 3049 C A G C U C A C C C G U C SEQRES 97 1 3049 G A G G U C C G G G G C C SEQRES 98 1 3049 C C G A A A A U G G A C G SEQRES 99 1 3049 G G G C U C A A G C C G G SEQRES 100 1 3049 C C G C C G A G A C C C C SEQRES 101 1 3049 G G C G C A C G G A C C G SEQRES 102 1 3049 A U U G G U C C G U G A U SEQRES 103 1 3049 C G G G U A G G C G G G C SEQRES 104 1 3049 G U G C C G G U G G C G U SEQRES 105 1 3049 A G A A G C C G G G C C G SEQRES 106 1 3049 U A A G G U C C G G U G G SEQRES 107 1 3049 A G C C G C C G G U A U C SEQRES 108 1 3049 G C G G A U C C U G C C G SEQRES 109 1 3049 G G A G U A G C A G C G U SEQRES 110 1 3049 A G U C G G G U G A G A A SEQRES 111 1 3049 U C C C G A C C G C C G G SEQRES 112 1 3049 A G G G G C C A G G G U U SEQRES 113 1 3049 C C A C G G C A A U G G U SEQRES 114 1 3049 C G U C A G C C G U G G G SEQRES 115 1 3049 U U A G U C G G U C C U A SEQRES 116 1 3049 A C C C C G C C C G U A A SEQRES 117 1 3049 C U C G G C G C G G G G G SEQRES 118 1 3049 A A A G G G A A A C G G G SEQRES 119 1 3049 U U U A U A U U C C C G U SEQRES 120 1 3049 A C C G C G G G G G U A G SEQRES 121 1 3049 G U G C G G C A A C G C A SEQRES 122 1 3049 A G C C C G G A G G G U G SEQRES 123 1 3049 A C G C C U C G G G G U A SEQRES 124 1 3049 G G C G G A C C G G C C G SEQRES 125 1 3049 A U G A G G C C G G C U A SEQRES 126 1 3049 A G C G U A U A A G C C C SEQRES 127 1 3049 G G G G A G U G C C G U A SEQRES 128 1 3049 A U G G C G A G A A C C G SEQRES 129 1 3049 G G U G A A A G C G C G A SEQRES 130 1 3049 A U G G C C C C C C C G U SEQRES 131 1 3049 U A G G G G G G U U C C G SEQRES 132 1 3049 C C G A U C C C U G G G G SEQRES 133 1 3049 C C C G U G A A A A G C C SEQRES 134 1 3049 C U C C G G G A A U U C C SEQRES 135 1 3049 G A U C C C C C G C G A C SEQRES 136 1 3049 C G U A C C G A G A A C C SEQRES 137 1 3049 G A C A C A G G U G C C C SEQRES 138 1 3049 C U G G G U G A G A A G C SEQRES 139 1 3049 C U A A G G C G U G U C G SEQRES 140 1 3049 G G G G A A A C C C G G C SEQRES 141 1 3049 C G A G G G A A C U C G G SEQRES 142 1 3049 C A A A C U G G C C C C G SEQRES 143 1 3049 U A A C U U C G G G A G A SEQRES 144 1 3049 A G G G G U G C C U G C G SEQRES 145 1 3049 G G U G C G U A A C C C G SEQRES 146 1 3049 C A G G U C G C A G U G A SEQRES 147 1 3049 C U A G G G G G G C C C G SEQRES 148 1 3049 A C U G U U U A A U A A A SEQRES 149 1 3049 A A C A C A G G U C C C A SEQRES 150 1 3049 G C U A G C C C G A A A G SEQRES 151 1 3049 G G U U U G U A C U G G G SEQRES 152 1 3049 G C C G A C G C C U G C C SEQRES 153 1 3049 C A G U G C C G G U A U G SEQRES 154 1 3049 U G A A G C C C G G G U A SEQRES 155 1 3049 C A A C C G G G U G A A G SEQRES 156 1 3049 C A C C G G U A A A C G G SEQRES 157 1 3049 C G G G G G U A A C U A U SEQRES 158 1 3049 A A C C C U C U U A A G G SEQRES 159 1 3049 U A G C G A A A U U C C U SEQRES 160 1 3049 U G U C G G U U A A A U G SEQRES 161 1 3049 C C G A C C U G C A U G A SEQRES 162 1 3049 A U G G C G U A A C G A G SEQRES 163 1 3049 G U C C C C G C U G U C C SEQRES 164 1 3049 C C G G C C G G G G C C C SEQRES 165 1 3049 G G C G A A A C C U C U G SEQRES 166 1 3049 C C U G G C G C G C A U G SEQRES 167 1 3049 C C A G G G A C C C C C G SEQRES 168 1 3049 G U G G G A A G C G A A G SEQRES 169 1 3049 A C C C C A U G G A G C U SEQRES 170 1 3049 U U A C U G C A G C C U G SEQRES 171 1 3049 C C G U U G C C A C A C G SEQRES 172 1 3049 G C G G G G G G U G C G C SEQRES 173 1 3049 A G C G U A G G C G G G A SEQRES 174 1 3049 G G C G U C G A A G C C C SEQRES 175 1 3049 G G C C U C C G G G U C G SEQRES 176 1 3049 G G U G G A G C C G U C C SEQRES 177 1 3049 A U G A G A C A C C G C C SEQRES 178 1 3049 C A C U C C C C G C U G U SEQRES 179 1 3049 G U G G C U A A C C C C C SEQRES 180 1 3049 G A A A G G G G G G A C A SEQRES 181 1 3049 G C G G U A G G U G G G C SEQRES 182 1 3049 A G U U U G G C U G G G G SEQRES 183 1 3049 C G G C A C G C C U C C G SEQRES 184 1 3049 A A A A G G U A U C G G A SEQRES 185 1 3049 G G C G C C C U A A G G U SEQRES 186 1 3049 C G G C U C A G G C G G G SEQRES 187 1 3049 U C A G G A A U C C G C C SEQRES 188 1 3049 G U A G A G U G C A A G G SEQRES 189 1 3049 G C A A A A G C C G G C C SEQRES 190 1 3049 U G A C U G G A C C C G U SEQRES 191 1 3049 A A C A G A G G C G G G U SEQRES 192 1 3049 C C A G C C C C G A A A G SEQRES 193 1 3049 G G U G G C C U A G C G A SEQRES 194 1 3049 A C C C C U G U G C C U C SEQRES 195 1 3049 C C C G G U G G G G G C C SEQRES 196 1 3049 A G G G A U G A C A G A A SEQRES 197 1 3049 A A G C U A C C C U G G G SEQRES 198 1 3049 G A U A A C A G A G U C G SEQRES 199 1 3049 U C U C G G G C G A G A G SEQRES 200 1 3049 C C C A U A U C G A C C C SEQRES 201 1 3049 C G A G G C U U G C U A C SEQRES 202 1 3049 C U C G C U G U C G G C U SEQRES 203 1 3049 C U U C C C A U C C U G G SEQRES 204 1 3049 C C C U G C A G C A G G G SEQRES 205 1 3049 G C C A A G G G U G G G G SEQRES 206 1 3049 G U G U U C A C C C A U U SEQRES 207 1 3049 A A A G G G G A A C G U G SEQRES 208 1 3049 A G C U G G G U U U A G A SEQRES 209 1 3049 C C G U C G U G A G A C A SEQRES 210 1 3049 G G U C G G A U G C U A U SEQRES 211 1 3049 C U A C C G G G G G U G U SEQRES 212 1 3049 U G G C C G C C U G A G G SEQRES 213 1 3049 G G A A G G U G C C C C U SEQRES 214 1 3049 A G U A C G A G A G G A A SEQRES 215 1 3049 C A G G G U G C C G C G G SEQRES 216 1 3049 C C U C U G G U C U A C C SEQRES 217 1 3049 G G U U G U C C U C C C G SEQRES 218 1 3049 G G C A U C G C C G G G C SEQRES 219 1 3049 A G C U A C G C C G C A G SEQRES 220 1 3049 C C G A U A A G G C C U G SEQRES 221 1 3049 A A A G C A U C U A A G G SEQRES 222 1 3049 C C G A A G C G G C C C C SEQRES 223 1 3049 C G A A A A U A G G C G G SEQRES 224 1 3049 C C G U U C C C U G G C G SEQRES 225 1 3049 C U U G G G C C U G G G C SEQRES 226 1 3049 G A C C G G C C C A U U G SEQRES 227 1 3049 C C A G G G A C G A G G G SEQRES 228 1 3049 C U C G G G U A G A A G A SEQRES 229 1 3049 C C C G G U U G A U A G G SEQRES 230 1 3049 G C G G G G A U G U A A G SEQRES 231 1 3049 C G G G A A G G G U C A A SEQRES 232 1 3049 C C G A C C C G C U U A G SEQRES 233 1 3049 U C C G C C G C C C C U A SEQRES 234 1 3049 A U C G C C C G A G G U C SEQRES 235 1 3049 C U G C C C C SEQRES 1 3 126 C G G C G G C C A U A G C SEQRES 2 3 126 G G G G G G G C C A C A C SEQRES 3 3 126 C C G G U C U C A U U U C SEQRES 4 3 126 G A A C C C G G A A G U U SEQRES 5 3 126 A A G C C C C C C A G C G SEQRES 6 3 126 A U C C C G G U U G U A C SEQRES 7 3 126 U G C C C U C C G A G A G SEQRES 8 3 126 G G G G C G G G A A G C C SEQRES 9 3 126 G G G G A C G C C G C C G SEQRES 10 3 126 G C C A C U A U C CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000