HEADER VIRUS 08-MAR-13 3J3I TITLE PENICILLIUM CHRYSOGENUM VIRUS (PCV) CAPSID STRUCTURE COMPND MOL_ID: 1; COMPND 2 MOLECULE: CAPSID PROTEIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: CP, COAT PROTEIN SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PENICILLIUM CHRYSOGENUM VIRUS (ISOLATE CASTON); SOURCE 3 ORGANISM_COMMON: PCV; SOURCE 4 ORGANISM_TAXID: 654932 KEYWDS DOUBLE-STRANDED RNA, FUNGAL VIRUS, VIRAL STRUCTURE, T=1 VIRUS, KEYWDS 2 DUPLICATED HELICAL FOLD, VIRUS EXPDTA ELECTRON MICROSCOPY AUTHOR D.LUQUE,J.GOMEZ-BLANCO,D.GARRIGA,A.BRILOT,J.M.GONZALEZ,W.H.HAVENS, AUTHOR 2 J.L.CARRASCOSA,B.L.TRUS,N.VERDAGUER,N.GRIGORIEFF,S.A.GHABRIAL, AUTHOR 3 J.R.CASTON REVDAT 4 21-FEB-24 3J3I 1 REMARK REVDAT 3 18-JUL-18 3J3I 1 REMARK REVDAT 2 25-JUN-14 3J3I 1 JRNL REVDAT 1 14-MAY-14 3J3I 0 JRNL AUTH D.LUQUE,J.GOMEZ-BLANCO,D.GARRIGA,A.F.BRILOT,J.M.GONZALEZ, JRNL AUTH 2 W.M.HAVENS,J.L.CARRASCOSA,B.L.TRUS,N.VERDAGUER,S.A.GHABRIAL, JRNL AUTH 3 J.R.CASTON JRNL TITL CRYO-EM NEAR-ATOMIC STRUCTURE OF A DSRNA FUNGAL VIRUS SHOWS JRNL TITL 2 ANCIENT STRUCTURAL MOTIFS PRESERVED IN THE DSRNA VIRAL JRNL TITL 3 LINEAGE. JRNL REF PROC.NATL.ACAD.SCI.USA V. 111 7641 2014 JRNL REFN ISSN 0027-8424 JRNL PMID 24821769 JRNL DOI 10.1073/PNAS.1404330111 REMARK 2 REMARK 2 RESOLUTION. 4.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : XMIPP REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : NULL REMARK 3 REFINEMENT PROTOCOL : NULL REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : 1.200 REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 4.100 REMARK 3 NUMBER OF PARTICLES : 27566 REMARK 3 CTF CORRECTION METHOD : NULL REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: (SINGLE PARTICLE--APPLIED SYMMETRY: I) REMARK 4 REMARK 4 3J3I COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-MAR-13. REMARK 100 THE DEPOSITION ID IS D_1000160204. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : VITREOUS ICE (CRYO EM) REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : PENICILLIUM CHRYSOGENUM VIRUS REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : NULL REMARK 245 SAMPLE SUPPORT DETAILS : C FLAT CF 1/2 4C GRIDS REMARK 245 SAMPLE VITRIFICATION DETAILS : SAMPLES WERE APPLIED TO GRIDS, REMARK 245 BLOTTED 7 SECONDS, AND PLUNGED REMARK 245 INTO LIQUID ETHANE (FEI REMARK 245 VITROBOT MARK II). REMARK 245 SAMPLE BUFFER : 50 MM TRIS-HCL, PH 7.8, 150 MM REMARK 245 NACL, 5 MM EDTA REMARK 245 PH : 7.80 REMARK 245 SAMPLE DETAILS : ICOSAHEDRAL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : 23-FEB-12 REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TECNAI F30 REMARK 245 DETECTOR TYPE : KODAK SO-163 FILM REMARK 245 MINIMUM DEFOCUS (NM) : 1100.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 3800.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : 0.00 REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : 0.00 REMARK 245 NOMINAL CS : 2.00 REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 2500.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : 58333 REMARK 245 CALIBRATED MAGNIFICATION : 56910 REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 THE ASSEMBLY REPRESENTED IN THIS ENTRY HAS REGULAR REMARK 300 ICOSAHEDRAL POINT SYMMETRY (SCHOENFLIES SYMBOL = I). REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 -0.809017 0.309017 0.00000 REMARK 350 BIOMT2 2 0.809017 0.309017 -0.500000 0.00000 REMARK 350 BIOMT3 2 0.309017 0.500000 0.809017 0.00000 REMARK 350 BIOMT1 3 -0.309017 -0.500000 0.809017 0.00000 REMARK 350 BIOMT2 3 0.500000 -0.809017 -0.309017 0.00000 REMARK 350 BIOMT3 3 0.809017 0.309017 0.500000 0.00000 REMARK 350 BIOMT1 4 -0.309017 0.500000 0.809017 0.00000 REMARK 350 BIOMT2 4 -0.500000 -0.809017 0.309017 0.00000 REMARK 350 BIOMT3 4 0.809017 -0.309017 0.500000 0.00000 REMARK 350 BIOMT1 5 0.500000 0.809017 0.309017 0.00000 REMARK 350 BIOMT2 5 -0.809017 0.309017 0.500000 0.00000 REMARK 350 BIOMT3 5 0.309017 -0.500000 0.809017 0.00000 REMARK 350 BIOMT1 6 -0.809017 0.309017 0.500000 0.00000 REMARK 350 BIOMT2 6 0.309017 -0.500000 0.809017 0.00000 REMARK 350 BIOMT3 6 0.500000 0.809017 0.309017 0.00000 REMARK 350 BIOMT1 7 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 7 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT3 7 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT1 8 0.809017 0.309017 -0.500000 0.00000 REMARK 350 BIOMT2 8 0.309017 0.500000 0.809017 0.00000 REMARK 350 BIOMT3 8 0.500000 -0.809017 0.309017 0.00000 REMARK 350 BIOMT1 9 0.500000 -0.809017 -0.309017 0.00000 REMARK 350 BIOMT2 9 0.809017 0.309017 0.500000 0.00000 REMARK 350 BIOMT3 9 -0.309017 -0.500000 0.809017 0.00000 REMARK 350 BIOMT1 10 -0.500000 -0.809017 0.309017 0.00000 REMARK 350 BIOMT2 10 0.809017 -0.309017 0.500000 0.00000 REMARK 350 BIOMT3 10 -0.309017 0.500000 0.809017 0.00000 REMARK 350 BIOMT1 11 -0.500000 -0.809017 0.309017 0.00000 REMARK 350 BIOMT2 11 -0.809017 0.309017 -0.500000 0.00000 REMARK 350 BIOMT3 11 0.309017 -0.500000 -0.809017 0.00000 REMARK 350 BIOMT1 12 -0.809017 0.309017 0.500000 0.00000 REMARK 350 BIOMT2 12 -0.309017 0.500000 -0.809017 0.00000 REMARK 350 BIOMT3 12 -0.500000 -0.809017 -0.309017 0.00000 REMARK 350 BIOMT1 13 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 13 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT3 13 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT1 14 0.809017 0.309017 -0.500000 0.00000 REMARK 350 BIOMT2 14 -0.309017 -0.500000 -0.809017 0.00000 REMARK 350 BIOMT3 14 -0.500000 0.809017 -0.309017 0.00000 REMARK 350 BIOMT1 15 0.500000 -0.809017 -0.309017 0.00000 REMARK 350 BIOMT2 15 -0.809017 -0.309017 -0.500000 0.00000 REMARK 350 BIOMT3 15 0.309017 0.500000 -0.809017 0.00000 REMARK 350 BIOMT1 16 0.309017 0.500000 -0.809017 0.00000 REMARK 350 BIOMT2 16 0.500000 -0.809017 -0.309017 0.00000 REMARK 350 BIOMT3 16 -0.809017 -0.309017 -0.500000 0.00000 REMARK 350 BIOMT1 17 0.309017 -0.500000 -0.809017 0.00000 REMARK 350 BIOMT2 17 -0.500000 -0.809017 0.309017 0.00000 REMARK 350 BIOMT3 17 -0.809017 0.309017 -0.500000 0.00000 REMARK 350 BIOMT1 18 -0.500000 -0.809017 -0.309017 0.00000 REMARK 350 BIOMT2 18 -0.809017 0.309017 0.500000 0.00000 REMARK 350 BIOMT3 18 -0.309017 0.500000 -0.809017 0.00000 REMARK 350 BIOMT1 19 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 19 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 19 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 20 -0.500000 0.809017 -0.309017 0.00000 REMARK 350 BIOMT2 20 0.809017 0.309017 -0.500000 0.00000 REMARK 350 BIOMT3 20 -0.309017 -0.500000 -0.809017 0.00000 REMARK 350 BIOMT1 21 -0.500000 -0.809017 -0.309017 0.00000 REMARK 350 BIOMT2 21 0.809017 -0.309017 -0.500000 0.00000 REMARK 350 BIOMT3 21 0.309017 -0.500000 0.809017 0.00000 REMARK 350 BIOMT1 22 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 22 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 22 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 23 -0.500000 0.809017 -0.309017 0.00000 REMARK 350 BIOMT2 23 -0.809017 -0.309017 0.500000 0.00000 REMARK 350 BIOMT3 23 0.309017 0.500000 0.809017 0.00000 REMARK 350 BIOMT1 24 0.309017 0.500000 -0.809017 0.00000 REMARK 350 BIOMT2 24 -0.500000 0.809017 0.309017 0.00000 REMARK 350 BIOMT3 24 0.809017 0.309017 0.500000 0.00000 REMARK 350 BIOMT1 25 0.309017 -0.500000 -0.809017 0.00000 REMARK 350 BIOMT2 25 0.500000 0.809017 -0.309017 0.00000 REMARK 350 BIOMT3 25 0.809017 -0.309017 0.500000 0.00000 REMARK 350 BIOMT1 26 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT2 26 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 26 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT1 27 -0.309017 -0.500000 -0.809017 0.00000 REMARK 350 BIOMT2 27 -0.500000 0.809017 -0.309017 0.00000 REMARK 350 BIOMT3 27 0.809017 0.309017 -0.500000 0.00000 REMARK 350 BIOMT1 28 -0.809017 -0.309017 -0.500000 0.00000 REMARK 350 BIOMT2 28 0.309017 0.500000 -0.809017 0.00000 REMARK 350 BIOMT3 28 0.500000 -0.809017 -0.309017 0.00000 REMARK 350 BIOMT1 29 -0.809017 0.309017 -0.500000 0.00000 REMARK 350 BIOMT2 29 0.309017 -0.500000 -0.809017 0.00000 REMARK 350 BIOMT3 29 -0.500000 -0.809017 0.309017 0.00000 REMARK 350 BIOMT1 30 -0.309017 0.500000 -0.809017 0.00000 REMARK 350 BIOMT2 30 -0.500000 -0.809017 -0.309017 0.00000 REMARK 350 BIOMT3 30 -0.809017 0.309017 0.500000 0.00000 REMARK 350 BIOMT1 31 0.809017 0.309017 0.500000 0.00000 REMARK 350 BIOMT2 31 -0.309017 -0.500000 0.809017 0.00000 REMARK 350 BIOMT3 31 0.500000 -0.809017 -0.309017 0.00000 REMARK 350 BIOMT1 32 0.809017 -0.309017 0.500000 0.00000 REMARK 350 BIOMT2 32 -0.309017 0.500000 0.809017 0.00000 REMARK 350 BIOMT3 32 -0.500000 -0.809017 0.309017 0.00000 REMARK 350 BIOMT1 33 0.309017 -0.500000 0.809017 0.00000 REMARK 350 BIOMT2 33 0.500000 0.809017 0.309017 0.00000 REMARK 350 BIOMT3 33 -0.809017 0.309017 0.500000 0.00000 REMARK 350 BIOMT1 34 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT2 34 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 34 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT1 35 0.309017 0.500000 0.809017 0.00000 REMARK 350 BIOMT2 35 0.500000 -0.809017 0.309017 0.00000 REMARK 350 BIOMT3 35 0.809017 0.309017 -0.500000 0.00000 REMARK 350 BIOMT1 36 -0.309017 0.500000 0.809017 0.00000 REMARK 350 BIOMT2 36 0.500000 0.809017 -0.309017 0.00000 REMARK 350 BIOMT3 36 -0.809017 0.309017 -0.500000 0.00000 REMARK 350 BIOMT1 37 0.500000 0.809017 0.309017 0.00000 REMARK 350 BIOMT2 37 0.809017 -0.309017 -0.500000 0.00000 REMARK 350 BIOMT3 37 -0.309017 0.500000 -0.809017 0.00000 REMARK 350 BIOMT1 38 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 38 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 38 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 39 0.500000 -0.809017 0.309017 0.00000 REMARK 350 BIOMT2 39 -0.809017 -0.309017 0.500000 0.00000 REMARK 350 BIOMT3 39 -0.309017 -0.500000 -0.809017 0.00000 REMARK 350 BIOMT1 40 -0.309017 -0.500000 0.809017 0.00000 REMARK 350 BIOMT2 40 -0.500000 0.809017 0.309017 0.00000 REMARK 350 BIOMT3 40 -0.809017 -0.309017 -0.500000 0.00000 REMARK 350 BIOMT1 41 -0.500000 0.809017 0.309017 0.00000 REMARK 350 BIOMT2 41 -0.809017 -0.309017 -0.500000 0.00000 REMARK 350 BIOMT3 41 -0.309017 -0.500000 0.809017 0.00000 REMARK 350 BIOMT1 42 0.500000 0.809017 -0.309017 0.00000 REMARK 350 BIOMT2 42 -0.809017 0.309017 -0.500000 0.00000 REMARK 350 BIOMT3 42 -0.309017 0.500000 0.809017 0.00000 REMARK 350 BIOMT1 43 0.809017 -0.309017 -0.500000 0.00000 REMARK 350 BIOMT2 43 -0.309017 0.500000 -0.809017 0.00000 REMARK 350 BIOMT3 43 0.500000 0.809017 0.309017 0.00000 REMARK 350 BIOMT1 44 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 44 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT3 44 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT1 45 -0.809017 -0.309017 0.500000 0.00000 REMARK 350 BIOMT2 45 -0.309017 -0.500000 -0.809017 0.00000 REMARK 350 BIOMT3 45 0.500000 -0.809017 0.309017 0.00000 REMARK 350 BIOMT1 46 0.809017 -0.309017 0.500000 0.00000 REMARK 350 BIOMT2 46 0.309017 -0.500000 -0.809017 0.00000 REMARK 350 BIOMT3 46 0.500000 0.809017 -0.309017 0.00000 REMARK 350 BIOMT1 47 0.309017 -0.500000 0.809017 0.00000 REMARK 350 BIOMT2 47 -0.500000 -0.809017 -0.309017 0.00000 REMARK 350 BIOMT3 47 0.809017 -0.309017 -0.500000 0.00000 REMARK 350 BIOMT1 48 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT2 48 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 48 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT1 49 0.309017 0.500000 0.809017 0.00000 REMARK 350 BIOMT2 49 -0.500000 0.809017 -0.309017 0.00000 REMARK 350 BIOMT3 49 -0.809017 -0.309017 0.500000 0.00000 REMARK 350 BIOMT1 50 0.809017 0.309017 0.500000 0.00000 REMARK 350 BIOMT2 50 0.309017 0.500000 -0.809017 0.00000 REMARK 350 BIOMT3 50 -0.500000 0.809017 0.309017 0.00000 REMARK 350 BIOMT1 51 -0.309017 0.500000 -0.809017 0.00000 REMARK 350 BIOMT2 51 0.500000 0.809017 0.309017 0.00000 REMARK 350 BIOMT3 51 0.809017 -0.309017 -0.500000 0.00000 REMARK 350 BIOMT1 52 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT2 52 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 52 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT1 53 -0.309017 -0.500000 -0.809017 0.00000 REMARK 350 BIOMT2 53 0.500000 -0.809017 0.309017 0.00000 REMARK 350 BIOMT3 53 -0.809017 -0.309017 0.500000 0.00000 REMARK 350 BIOMT1 54 -0.809017 -0.309017 -0.500000 0.00000 REMARK 350 BIOMT2 54 -0.309017 -0.500000 0.809017 0.00000 REMARK 350 BIOMT3 54 -0.500000 0.809017 0.309017 0.00000 REMARK 350 BIOMT1 55 -0.809017 0.309017 -0.500000 0.00000 REMARK 350 BIOMT2 55 -0.309017 0.500000 0.809017 0.00000 REMARK 350 BIOMT3 55 0.500000 0.809017 -0.309017 0.00000 REMARK 350 BIOMT1 56 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 56 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT3 56 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT1 57 -0.809017 -0.309017 0.500000 0.00000 REMARK 350 BIOMT2 57 0.309017 0.500000 0.809017 0.00000 REMARK 350 BIOMT3 57 -0.500000 0.809017 -0.309017 0.00000 REMARK 350 BIOMT1 58 -0.500000 0.809017 0.309017 0.00000 REMARK 350 BIOMT2 58 0.809017 0.309017 0.500000 0.00000 REMARK 350 BIOMT3 58 0.309017 0.500000 -0.809017 0.00000 REMARK 350 BIOMT1 59 0.500000 0.809017 -0.309017 0.00000 REMARK 350 BIOMT2 59 0.809017 -0.309017 0.500000 0.00000 REMARK 350 BIOMT3 59 0.309017 -0.500000 -0.809017 0.00000 REMARK 350 BIOMT1 60 0.809017 -0.309017 -0.500000 0.00000 REMARK 350 BIOMT2 60 0.309017 -0.500000 0.809017 0.00000 REMARK 350 BIOMT3 60 -0.500000 -0.809017 -0.309017 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ALA A 499 N C O CB REMARK 470 GLY A 500 N C O REMARK 470 TYR A 501 N C O CB CG CD1 CD2 REMARK 470 TYR A 501 CE1 CE2 CZ OH REMARK 470 ASP A 502 N C O CB CG OD1 OD2 REMARK 470 VAL A 503 N C O CB CG1 CG2 REMARK 470 LEU A 504 N C O CB CG CD1 CD2 REMARK 470 VAL A 505 N C O CB CG1 CG2 REMARK 470 GLU A 506 N C O CB CG CD OE1 REMARK 470 GLU A 506 OE2 REMARK 470 GLU A 507 N C O CB CG CD OE1 REMARK 470 GLU A 507 OE2 REMARK 470 LEU A 508 N C O CB CG CD1 CD2 REMARK 470 THR A 509 N C O CB OG1 CG2 REMARK 470 LEU A 510 N C O CB CG CD1 CD2 REMARK 470 ALA A 511 N C O CB REMARK 470 ASN A 512 N C O CB CG OD1 ND2 REMARK 470 ILE A 513 N C O CB CG1 CG2 CD1 REMARK 470 ARG A 514 N C O CB CG CD NE REMARK 470 ARG A 514 CZ NH1 NH2 REMARK 470 ILE A 515 N C O CB CG1 CG2 CD1 REMARK 470 LYS A 956 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CE MET A 121 ND2 ASN A 481 1.37 REMARK 500 CG ARG A 549 O ARG A 686 1.44 REMARK 500 CG GLU A 516 CB LYS A 956 1.59 REMARK 500 NH2 ARG A 610 CG GLU A 674 1.73 REMARK 500 CZ ARG A 610 CG GLU A 674 1.79 REMARK 500 NH1 ARG A 610 OE2 GLU A 674 1.80 REMARK 500 OG SER A 495 ND2 ASN A 849 1.80 REMARK 500 CB ARG A 549 O ARG A 686 1.81 REMARK 500 O LYS A 103 CG LEU A 493 1.84 REMARK 500 CG1 VAL A 550 O GLY A 752 1.85 REMARK 500 CE MET A 121 CG ASN A 481 1.86 REMARK 500 CA TYR A 104 CD2 LEU A 493 1.87 REMARK 500 CD1 ILE A 94 CB ALA A 496 1.99 REMARK 500 O LYS A 103 CD1 LEU A 493 1.99 REMARK 500 OE2 GLU A 118 CG2 ILE A 484 2.08 REMARK 500 NE ARG A 614 O ARG A 677 2.08 REMARK 500 CA GLU A 507 CG2 ILE A 626 2.08 REMARK 500 CG2 VAL A 5 CB PRO A 17 2.12 REMARK 500 NH1 ARG A 610 CG GLU A 674 2.12 REMARK 500 OE1 GLU A 674 O GLU A 685 2.18 REMARK 500 CE MET A 520 CG2 THR A 541 2.19 REMARK 500 CG ARG A 549 C ARG A 686 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 14 -147.17 -125.56 REMARK 500 ARG A 60 -71.37 -153.21 REMARK 500 GLU A 61 -75.21 -68.83 REMARK 500 PRO A 90 40.19 -80.50 REMARK 500 LEU A 92 -37.70 70.90 REMARK 500 ILE A 110 -52.70 78.61 REMARK 500 GLU A 118 99.82 -163.52 REMARK 500 LEU A 146 66.67 60.08 REMARK 500 ILE A 160 99.94 -29.93 REMARK 500 ASN A 173 73.10 58.19 REMARK 500 ASN A 183 -37.87 -138.61 REMARK 500 GLN A 199 106.12 -162.08 REMARK 500 LYS A 201 53.11 -148.18 REMARK 500 ALA A 216 -65.61 -104.64 REMARK 500 LEU A 244 133.30 75.15 REMARK 500 PRO A 255 40.77 -86.03 REMARK 500 GLU A 270 -111.52 42.86 REMARK 500 PRO A 272 108.97 -24.38 REMARK 500 PHE A 276 100.52 17.95 REMARK 500 SER A 278 -95.40 58.13 REMARK 500 ALA A 286 97.93 -18.33 REMARK 500 ASP A 288 70.33 93.22 REMARK 500 THR A 351 82.22 -154.05 REMARK 500 VAL A 352 106.45 -59.90 REMARK 500 VAL A 353 87.98 -56.79 REMARK 500 SER A 424 -155.88 -123.07 REMARK 500 LEU A 426 -72.53 -104.33 REMARK 500 SER A 432 -159.33 -124.42 REMARK 500 LEU A 434 57.29 -164.75 REMARK 500 LEU A 439 63.26 60.66 REMARK 500 GLU A 451 63.01 -106.97 REMARK 500 THR A 454 56.45 74.75 REMARK 500 TYR A 457 -92.47 47.65 REMARK 500 THR A 464 -68.11 -97.14 REMARK 500 CYS A 478 -17.05 82.05 REMARK 500 ASN A 481 7.25 149.26 REMARK 500 LEU A 487 -178.80 71.34 REMARK 500 LYS A 519 46.50 117.78 REMARK 500 MET A 520 39.56 127.27 REMARK 500 SER A 544 -69.58 -125.12 REMARK 500 ALA A 547 -128.77 66.28 REMARK 500 HIS A 548 -129.09 59.92 REMARK 500 ARG A 549 -179.49 89.45 REMARK 500 VAL A 584 -30.84 87.00 REMARK 500 VAL A 592 -73.77 -62.16 REMARK 500 ARG A 599 147.62 -179.81 REMARK 500 THR A 602 -42.86 -141.42 REMARK 500 GLU A 628 153.09 -43.51 REMARK 500 PRO A 630 85.08 -68.33 REMARK 500 SER A 638 78.81 55.73 REMARK 500 REMARK 500 THIS ENTRY HAS 100 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-5600 RELATED DB: EMDB REMARK 900 PENICILLIUM CHRYSOGENUM VIRUS (PCV) CAPSID CRYOEM MAP DBREF 3J3I A 1 982 UNP Q8JVC1 CAPSD_PCVC 1 982 SEQRES 1 A 982 MET ALA ALA PRO VAL LEU TYR GLY GLY ALA GLY GLY THR SEQRES 2 A 982 ALA THR GLY PRO GLY ASP MET ARG ARG SER LEU MET HIS SEQRES 3 A 982 GLU LYS LYS GLN VAL PHE ALA GLU LEU ARG ARG GLU ALA SEQRES 4 A 982 GLN ALA LEU ARG VAL ALA LYS GLU ALA ARG GLY LYS MET SEQRES 5 A 982 SER VAL TRP ASP PRO SER THR ARG GLU GLY ALA ARG GLY SEQRES 6 A 982 TYR ARG GLU LYS VAL VAL ARG PHE GLY ARG GLN ILE ALA SEQRES 7 A 982 SER LEU LEU GLN TYR PHE GLU ASN MET HIS SER PRO ALA SEQRES 8 A 982 LEU ASP ILE ILE ALA CYS ASP LYS PHE LEU LEU LYS TYR SEQRES 9 A 982 GLN ILE TYR GLY ASP ILE ASP ARG ASP PRO ALA PHE GLY SEQRES 10 A 982 GLU ASN THR MET THR ALA GLU VAL PRO VAL VAL TRP ASP SEQRES 11 A 982 LYS CYS GLU VAL GLU VAL LYS LEU TYR ALA GLY PRO LEU SEQRES 12 A 982 GLN LYS LEU MET SER ARG ALA LYS LEU VAL GLY ALA ALA SEQRES 13 A 982 ARG GLU GLY ILE PRO ASN ARG ASN ASP VAL ALA LYS SER SEQRES 14 A 982 THR GLY TRP ASN GLN ASP GLN VAL GLN LYS PHE PRO ASP SEQRES 15 A 982 ASN ARG MET ASP SER LEU ILE SER LEU LEU GLU GLN MET SEQRES 16 A 982 GLN THR GLY GLN SER LYS LEU THR ARG LEU VAL LYS GLY SEQRES 17 A 982 PHE LEU ILE LEU LEU GLU MET ALA GLU ARG LYS GLU VAL SEQRES 18 A 982 ASP PHE HIS VAL GLY ASN HIS ILE HIS VAL THR TYR ALA SEQRES 19 A 982 ILE ALA PRO VAL CYS ASP SER TYR ASP LEU PRO GLY ARG SEQRES 20 A 982 CYS TYR VAL PHE ASN SER LYS PRO THR SER GLU ALA HIS SEQRES 21 A 982 ALA ALA VAL LEU LEU ALA MET CYS ARG GLU TYR PRO PRO SEQRES 22 A 982 PRO GLN PHE ALA SER HIS VAL SER VAL PRO ALA ASP ALA SEQRES 23 A 982 GLU ASP VAL CYS ILE VAL SER GLN GLY ARG GLN ILE GLN SEQRES 24 A 982 PRO GLY SER ALA VAL THR LEU ASN PRO GLY LEU VAL TYR SEQRES 25 A 982 SER SER ILE LEU THR TYR ALA MET ASP THR SER CYS THR SEQRES 26 A 982 ASP LEU LEU GLN GLU ALA GLN ILE ILE ALA CYS SER LEU SEQRES 27 A 982 GLN GLU ASN ARG TYR PHE SER ARG ILE GLY LEU PRO THR SEQRES 28 A 982 VAL VAL SER LEU TYR ASP LEU MET VAL PRO ALA PHE ILE SEQRES 29 A 982 ALA GLN ASN SER ALA LEU GLU GLY ALA ARG LEU SER GLY SEQRES 30 A 982 ASP LEU SER LYS ALA VAL GLY ARG VAL HIS GLN MET LEU SEQRES 31 A 982 GLY MET VAL ALA ALA LYS ASP ILE ILE SER ALA THR HIS SEQRES 32 A 982 MET GLN SER ARG THR GLY PHE ASP PRO SER HIS GLY ILE SEQRES 33 A 982 ARG GLN TYR LEU ASN SER ASN SER ARG LEU VAL THR GLN SEQRES 34 A 982 MET ALA SER LYS LEU THR GLY ILE GLY LEU PHE ASP ALA SEQRES 35 A 982 THR PRO GLN MET ARG ILE PHE SER GLU MET ASP THR ALA SEQRES 36 A 982 ASP TYR ALA ASP MET LEU HIS LEU THR ILE PHE GLU GLY SEQRES 37 A 982 LEU TRP LEU VAL GLN ASP ALA SER VAL CYS THR ASP ASN SEQRES 38 A 982 GLY PRO ILE SER PHE LEU VAL ASN GLY GLU LYS LEU LEU SEQRES 39 A 982 SER ALA ASP ARG ALA GLY TYR ASP VAL LEU VAL GLU GLU SEQRES 40 A 982 LEU THR LEU ALA ASN ILE ARG ILE GLU HIS HIS LYS MET SEQRES 41 A 982 PRO THR GLY ALA PHE THR THR ARG TRP VAL ALA ALA LYS SEQRES 42 A 982 ARG ASP SER ALA LEU ARG LEU THR PRO ARG SER ARG THR SEQRES 43 A 982 ALA HIS ARG VAL ASP MET VAL ARG GLU CYS ASP PHE ASN SEQRES 44 A 982 PRO THR MET ASN LEU LYS ALA ALA GLY PRO LYS ALA ARG SEQRES 45 A 982 LEU ARG GLY SER GLY VAL LYS SER ARG ARG ARG VAL SER SEQRES 46 A 982 GLU VAL PRO LEU ALA HIS VAL PHE ARG SER PRO PRO ARG SEQRES 47 A 982 ARG GLU SER THR THR THR THR ASP ASP SER PRO ARG TRP SEQRES 48 A 982 LEU THR ARG GLU GLY PRO GLN LEU THR ARG ARG VAL PRO SEQRES 49 A 982 ILE ILE ASP GLU PRO PRO ALA TYR GLU SER GLY ARG SER SEQRES 50 A 982 SER SER PRO VAL THR SER SER ILE SER GLU GLY THR SER SEQRES 51 A 982 GLN HIS GLU GLU GLU MET GLY LEU PHE ASP ALA GLU GLU SEQRES 52 A 982 LEU PRO MET GLN GLN THR VAL ILE ALA THR GLU ALA ARG SEQRES 53 A 982 ARG ARG LEU GLY ARG GLY THR LEU GLU ARG ILE GLN GLU SEQRES 54 A 982 ALA ALA LEU GLU GLY GLN VAL ALA GLN GLY GLU VAL THR SEQRES 55 A 982 ALA GLU LYS ASN ARG ARG ILE GLU ALA MET LEU SER ALA SEQRES 56 A 982 ARG ASP PRO GLN PHE THR GLY ARG GLU GLN ILE THR LYS SEQRES 57 A 982 MET LEU SER ASP GLY GLY LEU GLY VAL ARG GLU ARG GLU SEQRES 58 A 982 GLU TRP LEU GLU LEU VAL ASP LYS THR VAL GLY VAL LYS SEQRES 59 A 982 GLY LEU LYS GLU VAL ARG SER ILE ASP GLY ILE ARG ARG SEQRES 60 A 982 HIS LEU GLU GLU TYR GLY GLU ARG GLU GLY PHE ALA VAL SEQRES 61 A 982 VAL ARG THR LEU LEU SER GLY ASN SER LYS HIS VAL ARG SEQRES 62 A 982 ARG ILE ASN GLN LEU ILE ARG GLU SER ASN PRO SER ALA SEQRES 63 A 982 PHE GLU THR GLU ALA SER ARG MET ARG ARG LEU ARG ALA SEQRES 64 A 982 ASP TRP ASP GLY ASP ALA GLY SER ALA PRO VAL ASN ALA SEQRES 65 A 982 LEU HIS PHE VAL GLY ASN SER PRO GLY TRP LYS ARG TRP SEQRES 66 A 982 LEU GLU ASN ASN ASN ILE PRO SER ASP ILE GLN VAL ALA SEQRES 67 A 982 GLY LYS LYS ARG MET CYS SER TYR LEU ALA GLU VAL LEU SEQRES 68 A 982 SER HIS GLY ASN LEU LYS LEU SER ASP ALA THR LYS LEU SEQRES 69 A 982 GLY ARG LEU VAL GLU GLY THR SER LEU ASP LEU PHE PRO SEQRES 70 A 982 PRO GLN LEU SER SER GLU GLU PHE SER THR CYS SER GLU SEQRES 71 A 982 ALA THR LEU ALA TRP ARG ASN ALA PRO SER SER LEU GLY SEQRES 72 A 982 VAL ARG PRO PHE ALA GLN GLU ASP SER ARG TRP LEU VAL SEQRES 73 A 982 MET ALA ALA THR CYS GLY GLY GLY SER PHE GLY ILE GLY SEQRES 74 A 982 LYS LEU LYS SER LEU CYS LYS GLU PHE SER VAL PRO LYS SEQRES 75 A 982 GLU LEU ARG ASP ALA LEU ARG VAL LYS TYR GLY LEU PHE SEQRES 76 A 982 GLY GLY LYS ASP SER LEU GLU HELIX 1 1 PHE A 32 LYS A 46 1 15 HELIX 2 2 ALA A 48 SER A 53 1 6 HELIX 3 3 ARG A 75 ASN A 86 1 12 HELIX 4 4 ASP A 93 CYS A 97 5 5 HELIX 5 5 ARG A 149 GLY A 154 1 6 HELIX 6 6 ARG A 163 GLY A 171 1 9 HELIX 7 7 ASN A 173 LYS A 179 1 7 HELIX 8 8 ARG A 184 GLU A 193 1 10 HELIX 9 9 LYS A 201 MET A 215 1 15 HELIX 10 10 ILE A 235 TYR A 242 1 8 HELIX 11 11 SER A 257 ARG A 269 1 13 HELIX 12 12 LEU A 310 MET A 320 1 11 HELIX 13 13 ASP A 326 GLN A 339 1 14 HELIX 14 14 ASP A 378 THR A 402 1 25 HELIX 15 15 PHE A 410 ILE A 416 1 7 HELIX 16 16 GLN A 418 SER A 422 5 5 HELIX 17 17 TYR A 457 HIS A 462 1 6 HELIX 18 18 GLU A 467 SER A 476 1 10 HELIX 19 19 ALA A 566 ARG A 574 1 9 HELIX 20 20 VAL A 587 PHE A 593 1 7 HELIX 21 21 ASP A 606 THR A 620 1 15 HELIX 22 22 VAL A 641 SER A 646 1 6 HELIX 23 23 GLU A 647 THR A 649 5 3 HELIX 24 24 GLU A 663 VAL A 670 1 8 HELIX 25 25 GLU A 710 THR A 721 1 12 HELIX 26 26 ILE A 726 ASP A 732 1 7 HELIX 27 27 VAL A 737 GLU A 745 1 9 HELIX 28 28 LEU A 785 GLU A 801 1 17 HELIX 29 29 SER A 802 PHE A 807 1 6 HELIX 30 30 SER A 827 VAL A 830 5 4 HELIX 31 31 ASN A 831 GLY A 837 1 7 HELIX 32 32 GLU A 847 ASN A 849 5 3 HELIX 33 33 ASN A 850 CYS A 864 1 15 HELIX 34 34 PRO A 897 CYS A 908 1 12 HELIX 35 35 ASP A 931 ALA A 939 1 9 HELIX 36 36 GLU A 963 LEU A 968 5 6 SHEET 1 A 2 LYS A 99 TYR A 104 0 SHEET 2 A 2 ALA A 123 VAL A 128 -1 O ALA A 123 N TYR A 104 SHEET 1 B 2 GLN A 199 SER A 200 0 SHEET 2 B 2 SER A 354 LEU A 355 -1 O SER A 354 N SER A 200 SHEET 1 C 3 HIS A 228 HIS A 230 0 SHEET 2 C 3 CYS A 290 VAL A 292 1 O ILE A 291 N HIS A 230 SHEET 3 C 3 TYR A 249 PHE A 251 1 N VAL A 250 O VAL A 292 SHEET 1 D 4 LYS A 533 ARG A 539 0 SHEET 2 D 4 THR A 522 ARG A 528 -1 N PHE A 525 O SER A 536 SHEET 3 D 4 GLY A 947 LEU A 951 -1 O GLY A 949 N THR A 526 SHEET 4 D 4 PRO A 961 LYS A 962 -1 O LYS A 962 N LYS A 950 SHEET 1 E 3 ARG A 636 SER A 637 0 SHEET 2 E 3 GLY A 694 VAL A 696 1 O GLY A 694 N ARG A 636 SHEET 3 E 3 GLU A 653 GLU A 654 1 N GLU A 653 O GLN A 695 CISPEP 1 ALA A 3 PRO A 4 0 1.29 CISPEP 2 PRO A 273 PRO A 274 0 -5.56 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000