data_3J47 # _entry.id 3J47 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3J47 pdb_00003j47 10.2210/pdb3j47/pdb RCSB RCSB160229 ? ? WWPDB D_1000160229 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2013-08-28 2 'Structure model' 1 1 2013-09-25 3 'Structure model' 1 2 2013-10-02 4 'Structure model' 1 3 2018-07-18 5 'Structure model' 1 4 2024-02-21 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' Other 3 4 'Structure model' 'Data collection' 4 5 'Structure model' 'Data collection' 5 5 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' em_image_scans 2 4 'Structure model' em_software 3 5 'Structure model' chem_comp_atom 4 5 'Structure model' chem_comp_bond 5 5 'Structure model' database_2 # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_em_software.name' 2 5 'Structure model' '_database_2.pdbx_DOI' 3 5 'Structure model' '_database_2.pdbx_database_accession' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3J47 _pdbx_database_status.recvd_initial_deposition_date 2013-06-27 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.content_type _pdbx_database_related.details EMDB EMD-2165 'associated EM volume' '26S yeast proteasome' PDB 4B4T unspecified '26S yeast proteasome flexibly fitted model' # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Estrin, E.' 1 'Lopez-Blanco, J.R.' 2 'Chacon, P.' 3 'Martin, A.' 4 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary 'Formation of an Intricate Helical Bundle Dictates the Assembly of the 26S Proteasome Lid.' Structure 21 1624 1635 2013 STRUE6 UK 0969-2126 2005 ? 23911091 10.1016/j.str.2013.06.023 original_data_1 'Near-atomic resolution structural model of the yeast 26S proteasome.' Proc.Natl.Acad.Sci.USA 109 14870 14875 2012 PNASA6 US 0027-8424 0040 ? 22927375 10.1073/pnas.1213333109 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Estrin, E.' 1 ? primary 'Lopez-Blanco, J.R.' 2 ? primary 'Chacon, P.' 3 ? primary 'Martin, A.' 4 ? original_data_1 'Beck, F.' 5 ? original_data_1 'Unverdorben, P.' 6 ? original_data_1 'Bohn, S.' 7 ? original_data_1 'Schweitzer, A.' 8 ? original_data_1 'Pfeifer, G.' 9 ? original_data_1 'Sakata, E.' 10 ? original_data_1 'Nickell, S.' 11 ? original_data_1 'Plitzko, J.M.' 12 ? original_data_1 'Villa, E.' 13 ? original_data_1 'Baumeister, W.' 14 ? original_data_1 'Forster, F.' 15 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer nat '26S proteasome regulatory subunit RPN11' 8013.857 1 ? ? 'last three C-terminal helices (UNP residues 230-298)' ? 2 polymer nat '26S proteasome regulatory subunit RPN8' 13965.031 1 ? ? 'last three C-terminal helices (UNP residues 188-308)' ? 3 polymer nat '26S proteasome regulatory subunit RPN9' 3353.889 1 ? ? 'C-terminal helix (UNP residues 360-387)' ? 4 polymer nat '26S proteasome regulatory subunit RPN5' 3984.469 1 ? ? 'C-terminal helix (UNP residues 409-442)' ? 5 polymer nat '26S proteasome regulatory subunit RPN6' 2741.054 1 ? ? 'C-terminal helix (UNP residues 407-431)' ? 6 polymer nat '26S proteasome regulatory subunit RPN7' 2890.363 1 ? ? 'C-terminal helix (UNP residues 397-422)' ? 7 polymer nat '26S proteasome regulatory subunit RPN3' 2924.156 1 ? ? 'C-terminal helix (UNP residues 455-478)' ? 8 polymer nat '26S proteasome regulatory subunit RPN12' 1955.234 1 ? ? 'C-terminal helix (UNP residues 256-272)' ? # loop_ _entity_name_com.entity_id _entity_name_com.name 1 'Protein MPR1' 3 'Proteasome non-ATPase subunit 7' 4 'Proteasome non-ATPase subunit 5' 5 'Proteasome non-ATPase subunit 4' 8 'Nuclear integrity protein 1' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no YEEKEESNLAATKSMVKIAEQYSKRIEEEKELTEEELKTRYVGRQDPKKHLSETADETLENNIVSVLTA YEEKEESNLAATKSMVKIAEQYSKRIEEEKELTEEELKTRYVGRQDPKKHLSETADETLENNIVSVLTA V ? 2 'polypeptide(L)' no no ;IRLTNQLKSLKGLQSKLKDVVEYLDKVINKELPINHTILGKLQDVFNLLPNLGTPDDDEIDVENHDRINISNNLQKALTV KTNDELMVIYISNLVRSIIAFDDLIENKIQNKKIQEQRVKD ; ;IRLTNQLKSLKGLQSKLKDVVEYLDKVINKELPINHTILGKLQDVFNLLPNLGTPDDDEIDVENHDRINISNNLQKALTV KTNDELMVIYISNLVRSIIAFDDLIENKIQNKKIQEQRVKD ; U ? 3 'polypeptide(L)' no no GDQITKMKDRLVEWNDQVEKLGKKMEAR GDQITKMKDRLVEWNDQVEKLGKKMEAR O ? 4 'polypeptide(L)' no no SQLLNEWSHNVDELLEHIETIGHLITKEEIMHGL SQLLNEWSHNVDELLEHIETIGHLITKEEIMHGL P ? 5 'polypeptide(L)' no no ATYDSALELVGQLNKVVDQLFEKAS ATYDSALELVGQLNKVVDQLFEKAS Q ? 6 'polypeptide(L)' no no NAQYHLLVKQGDGLLTKLQKYGAAVR NAQYHLLVKQGDGLLTKLQKYGAAVR R ? 7 'polypeptide(L)' no no EDPQQVFDERIKFANQLHDEYLVS EDPQQVFDERIKFANQLHDEYLVS S ? 8 'polypeptide(L)' no no KTNIIEKAMDYAISIEN KTNIIEKAMDYAISIEN T ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 TYR n 1 2 GLU n 1 3 GLU n 1 4 LYS n 1 5 GLU n 1 6 GLU n 1 7 SER n 1 8 ASN n 1 9 LEU n 1 10 ALA n 1 11 ALA n 1 12 THR n 1 13 LYS n 1 14 SER n 1 15 MET n 1 16 VAL n 1 17 LYS n 1 18 ILE n 1 19 ALA n 1 20 GLU n 1 21 GLN n 1 22 TYR n 1 23 SER n 1 24 LYS n 1 25 ARG n 1 26 ILE n 1 27 GLU n 1 28 GLU n 1 29 GLU n 1 30 LYS n 1 31 GLU n 1 32 LEU n 1 33 THR n 1 34 GLU n 1 35 GLU n 1 36 GLU n 1 37 LEU n 1 38 LYS n 1 39 THR n 1 40 ARG n 1 41 TYR n 1 42 VAL n 1 43 GLY n 1 44 ARG n 1 45 GLN n 1 46 ASP n 1 47 PRO n 1 48 LYS n 1 49 LYS n 1 50 HIS n 1 51 LEU n 1 52 SER n 1 53 GLU n 1 54 THR n 1 55 ALA n 1 56 ASP n 1 57 GLU n 1 58 THR n 1 59 LEU n 1 60 GLU n 1 61 ASN n 1 62 ASN n 1 63 ILE n 1 64 VAL n 1 65 SER n 1 66 VAL n 1 67 LEU n 1 68 THR n 1 69 ALA n 2 1 ILE n 2 2 ARG n 2 3 LEU n 2 4 THR n 2 5 ASN n 2 6 GLN n 2 7 LEU n 2 8 LYS n 2 9 SER n 2 10 LEU n 2 11 LYS n 2 12 GLY n 2 13 LEU n 2 14 GLN n 2 15 SER n 2 16 LYS n 2 17 LEU n 2 18 LYS n 2 19 ASP n 2 20 VAL n 2 21 VAL n 2 22 GLU n 2 23 TYR n 2 24 LEU n 2 25 ASP n 2 26 LYS n 2 27 VAL n 2 28 ILE n 2 29 ASN n 2 30 LYS n 2 31 GLU n 2 32 LEU n 2 33 PRO n 2 34 ILE n 2 35 ASN n 2 36 HIS n 2 37 THR n 2 38 ILE n 2 39 LEU n 2 40 GLY n 2 41 LYS n 2 42 LEU n 2 43 GLN n 2 44 ASP n 2 45 VAL n 2 46 PHE n 2 47 ASN n 2 48 LEU n 2 49 LEU n 2 50 PRO n 2 51 ASN n 2 52 LEU n 2 53 GLY n 2 54 THR n 2 55 PRO n 2 56 ASP n 2 57 ASP n 2 58 ASP n 2 59 GLU n 2 60 ILE n 2 61 ASP n 2 62 VAL n 2 63 GLU n 2 64 ASN n 2 65 HIS n 2 66 ASP n 2 67 ARG n 2 68 ILE n 2 69 ASN n 2 70 ILE n 2 71 SER n 2 72 ASN n 2 73 ASN n 2 74 LEU n 2 75 GLN n 2 76 LYS n 2 77 ALA n 2 78 LEU n 2 79 THR n 2 80 VAL n 2 81 LYS n 2 82 THR n 2 83 ASN n 2 84 ASP n 2 85 GLU n 2 86 LEU n 2 87 MET n 2 88 VAL n 2 89 ILE n 2 90 TYR n 2 91 ILE n 2 92 SER n 2 93 ASN n 2 94 LEU n 2 95 VAL n 2 96 ARG n 2 97 SER n 2 98 ILE n 2 99 ILE n 2 100 ALA n 2 101 PHE n 2 102 ASP n 2 103 ASP n 2 104 LEU n 2 105 ILE n 2 106 GLU n 2 107 ASN n 2 108 LYS n 2 109 ILE n 2 110 GLN n 2 111 ASN n 2 112 LYS n 2 113 LYS n 2 114 ILE n 2 115 GLN n 2 116 GLU n 2 117 GLN n 2 118 ARG n 2 119 VAL n 2 120 LYS n 2 121 ASP n 3 1 GLY n 3 2 ASP n 3 3 GLN n 3 4 ILE n 3 5 THR n 3 6 LYS n 3 7 MET n 3 8 LYS n 3 9 ASP n 3 10 ARG n 3 11 LEU n 3 12 VAL n 3 13 GLU n 3 14 TRP n 3 15 ASN n 3 16 ASP n 3 17 GLN n 3 18 VAL n 3 19 GLU n 3 20 LYS n 3 21 LEU n 3 22 GLY n 3 23 LYS n 3 24 LYS n 3 25 MET n 3 26 GLU n 3 27 ALA n 3 28 ARG n 4 1 SER n 4 2 GLN n 4 3 LEU n 4 4 LEU n 4 5 ASN n 4 6 GLU n 4 7 TRP n 4 8 SER n 4 9 HIS n 4 10 ASN n 4 11 VAL n 4 12 ASP n 4 13 GLU n 4 14 LEU n 4 15 LEU n 4 16 GLU n 4 17 HIS n 4 18 ILE n 4 19 GLU n 4 20 THR n 4 21 ILE n 4 22 GLY n 4 23 HIS n 4 24 LEU n 4 25 ILE n 4 26 THR n 4 27 LYS n 4 28 GLU n 4 29 GLU n 4 30 ILE n 4 31 MET n 4 32 HIS n 4 33 GLY n 4 34 LEU n 5 1 ALA n 5 2 THR n 5 3 TYR n 5 4 ASP n 5 5 SER n 5 6 ALA n 5 7 LEU n 5 8 GLU n 5 9 LEU n 5 10 VAL n 5 11 GLY n 5 12 GLN n 5 13 LEU n 5 14 ASN n 5 15 LYS n 5 16 VAL n 5 17 VAL n 5 18 ASP n 5 19 GLN n 5 20 LEU n 5 21 PHE n 5 22 GLU n 5 23 LYS n 5 24 ALA n 5 25 SER n 6 1 ASN n 6 2 ALA n 6 3 GLN n 6 4 TYR n 6 5 HIS n 6 6 LEU n 6 7 LEU n 6 8 VAL n 6 9 LYS n 6 10 GLN n 6 11 GLY n 6 12 ASP n 6 13 GLY n 6 14 LEU n 6 15 LEU n 6 16 THR n 6 17 LYS n 6 18 LEU n 6 19 GLN n 6 20 LYS n 6 21 TYR n 6 22 GLY n 6 23 ALA n 6 24 ALA n 6 25 VAL n 6 26 ARG n 7 1 GLU n 7 2 ASP n 7 3 PRO n 7 4 GLN n 7 5 GLN n 7 6 VAL n 7 7 PHE n 7 8 ASP n 7 9 GLU n 7 10 ARG n 7 11 ILE n 7 12 LYS n 7 13 PHE n 7 14 ALA n 7 15 ASN n 7 16 GLN n 7 17 LEU n 7 18 HIS n 7 19 ASP n 7 20 GLU n 7 21 TYR n 7 22 LEU n 7 23 VAL n 7 24 SER n 8 1 LYS n 8 2 THR n 8 3 ASN n 8 4 ILE n 8 5 ILE n 8 6 GLU n 8 7 LYS n 8 8 ALA n 8 9 MET n 8 10 ASP n 8 11 TYR n 8 12 ALA n 8 13 ILE n 8 14 SER n 8 15 ILE n 8 16 GLU n 8 17 ASN n # loop_ _entity_src_nat.entity_id _entity_src_nat.pdbx_src_id _entity_src_nat.pdbx_alt_source_flag _entity_src_nat.pdbx_beg_seq_num _entity_src_nat.pdbx_end_seq_num _entity_src_nat.common_name _entity_src_nat.pdbx_organism_scientific _entity_src_nat.pdbx_ncbi_taxonomy_id _entity_src_nat.genus _entity_src_nat.species _entity_src_nat.strain _entity_src_nat.tissue _entity_src_nat.tissue_fraction _entity_src_nat.pdbx_secretion _entity_src_nat.pdbx_fragment _entity_src_nat.pdbx_variant _entity_src_nat.pdbx_cell_line _entity_src_nat.pdbx_atcc _entity_src_nat.pdbx_cellular_location _entity_src_nat.pdbx_organ _entity_src_nat.pdbx_organelle _entity_src_nat.pdbx_cell _entity_src_nat.pdbx_plasmid_name _entity_src_nat.pdbx_plasmid_details _entity_src_nat.details 1 1 sample ? ? ;Baker's yeast ; 'Saccharomyces cerevisiae' 559292 ? ? 'ATCC 204508 / S288c' ? ? ? ? ? ? ? ? ? ? ? ? ? ? 2 1 sample ? ? ;Baker's yeast ; 'Saccharomyces cerevisiae' 559292 ? ? 'ATCC 204508 / S288c' ? ? ? ? ? ? ? ? ? ? ? ? ? ? 3 1 sample ? ? ;Baker's yeast ; 'Saccharomyces cerevisiae' 559292 ? ? 'ATCC 204508 / S288c' ? ? ? ? ? ? ? ? ? ? ? ? ? ? 4 1 sample ? ? ;Baker's yeast ; 'Saccharomyces cerevisiae' 559292 ? ? 'ATCC 204508 / S288c' ? ? ? ? ? ? ? ? ? ? ? ? ? ? 5 1 sample ? ? ;Baker's yeast ; 'Saccharomyces cerevisiae' 559292 ? ? 'ATCC 204508 / S288c' ? ? ? ? ? ? ? ? ? ? ? ? ? ? 6 1 sample ? ? ;Baker's yeast ; 'Saccharomyces cerevisiae' 559292 ? ? 'ATCC 204508 / S288c' ? ? ? ? ? ? ? ? ? ? ? ? ? ? 7 1 sample ? ? ;Baker's yeast ; 'Saccharomyces cerevisiae' 559292 ? ? 'ATCC 204508 / S288c' ? ? ? ? ? ? ? ? ? ? ? ? ? ? 8 1 sample ? ? ;Baker's yeast ; 'Saccharomyces cerevisiae' 559292 ? ? 'ATCC 204508 / S288c' ? ? ? ? ? ? ? ? ? ? ? ? ? ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 TYR 1 230 230 TYR TYR V . n A 1 2 GLU 2 231 231 GLU GLU V . n A 1 3 GLU 3 232 232 GLU GLU V . n A 1 4 LYS 4 233 233 LYS LYS V . n A 1 5 GLU 5 234 234 GLU GLU V . n A 1 6 GLU 6 235 235 GLU GLU V . n A 1 7 SER 7 236 236 SER SER V . n A 1 8 ASN 8 237 237 ASN ASN V . n A 1 9 LEU 9 238 238 LEU LEU V . n A 1 10 ALA 10 239 239 ALA ALA V . n A 1 11 ALA 11 240 240 ALA ALA V . n A 1 12 THR 12 241 241 THR THR V . n A 1 13 LYS 13 242 242 LYS LYS V . n A 1 14 SER 14 243 243 SER SER V . n A 1 15 MET 15 244 244 MET MET V . n A 1 16 VAL 16 245 245 VAL VAL V . n A 1 17 LYS 17 246 246 LYS LYS V . n A 1 18 ILE 18 247 247 ILE ILE V . n A 1 19 ALA 19 248 248 ALA ALA V . n A 1 20 GLU 20 249 249 GLU GLU V . n A 1 21 GLN 21 250 250 GLN GLN V . n A 1 22 TYR 22 251 251 TYR TYR V . n A 1 23 SER 23 252 252 SER SER V . n A 1 24 LYS 24 253 253 LYS LYS V . n A 1 25 ARG 25 254 254 ARG ARG V . n A 1 26 ILE 26 255 255 ILE ILE V . n A 1 27 GLU 27 256 256 GLU GLU V . n A 1 28 GLU 28 257 257 GLU GLU V . n A 1 29 GLU 29 258 258 GLU GLU V . n A 1 30 LYS 30 259 259 LYS LYS V . n A 1 31 GLU 31 260 260 GLU GLU V . n A 1 32 LEU 32 261 261 LEU LEU V . n A 1 33 THR 33 262 262 THR THR V . n A 1 34 GLU 34 263 263 GLU GLU V . n A 1 35 GLU 35 264 264 GLU GLU V . n A 1 36 GLU 36 265 265 GLU GLU V . n A 1 37 LEU 37 266 266 LEU LEU V . n A 1 38 LYS 38 267 267 LYS LYS V . n A 1 39 THR 39 268 268 THR THR V . n A 1 40 ARG 40 269 269 ARG ARG V . n A 1 41 TYR 41 270 ? ? ? V . n A 1 42 VAL 42 271 ? ? ? V . n A 1 43 GLY 43 272 ? ? ? V . n A 1 44 ARG 44 273 ? ? ? V . n A 1 45 GLN 45 274 ? ? ? V . n A 1 46 ASP 46 275 ? ? ? V . n A 1 47 PRO 47 276 276 PRO PRO V . n A 1 48 LYS 48 277 277 LYS LYS V . n A 1 49 LYS 49 278 278 LYS LYS V . n A 1 50 HIS 50 279 279 HIS HIS V . n A 1 51 LEU 51 280 280 LEU LEU V . n A 1 52 SER 52 281 281 SER SER V . n A 1 53 GLU 53 282 282 GLU GLU V . n A 1 54 THR 54 283 283 THR THR V . n A 1 55 ALA 55 284 284 ALA ALA V . n A 1 56 ASP 56 285 285 ASP ASP V . n A 1 57 GLU 57 286 286 GLU GLU V . n A 1 58 THR 58 287 287 THR THR V . n A 1 59 LEU 59 288 288 LEU LEU V . n A 1 60 GLU 60 289 289 GLU GLU V . n A 1 61 ASN 61 290 290 ASN ASN V . n A 1 62 ASN 62 291 291 ASN ASN V . n A 1 63 ILE 63 292 292 ILE ILE V . n A 1 64 VAL 64 293 293 VAL VAL V . n A 1 65 SER 65 294 294 SER SER V . n A 1 66 VAL 66 295 295 VAL VAL V . n A 1 67 LEU 67 296 296 LEU LEU V . n A 1 68 THR 68 297 297 THR THR V . n A 1 69 ALA 69 298 298 ALA ALA V . n B 2 1 ILE 1 188 188 ILE ILE U . n B 2 2 ARG 2 189 189 ARG ARG U . n B 2 3 LEU 3 190 190 LEU LEU U . n B 2 4 THR 4 191 191 THR THR U . n B 2 5 ASN 5 192 192 ASN ASN U . n B 2 6 GLN 6 193 193 GLN GLN U . n B 2 7 LEU 7 194 194 LEU LEU U . n B 2 8 LYS 8 195 195 LYS LYS U . n B 2 9 SER 9 196 196 SER SER U . n B 2 10 LEU 10 197 197 LEU LEU U . n B 2 11 LYS 11 198 198 LYS LYS U . n B 2 12 GLY 12 199 199 GLY GLY U . n B 2 13 LEU 13 200 200 LEU LEU U . n B 2 14 GLN 14 201 201 GLN GLN U . n B 2 15 SER 15 202 202 SER SER U . n B 2 16 LYS 16 203 203 LYS LYS U . n B 2 17 LEU 17 204 204 LEU LEU U . n B 2 18 LYS 18 205 205 LYS LYS U . n B 2 19 ASP 19 206 206 ASP ASP U . n B 2 20 VAL 20 207 207 VAL VAL U . n B 2 21 VAL 21 208 208 VAL VAL U . n B 2 22 GLU 22 209 209 GLU GLU U . n B 2 23 TYR 23 210 210 TYR TYR U . n B 2 24 LEU 24 211 211 LEU LEU U . n B 2 25 ASP 25 212 212 ASP ASP U . n B 2 26 LYS 26 213 213 LYS LYS U . n B 2 27 VAL 27 214 214 VAL VAL U . n B 2 28 ILE 28 215 215 ILE ILE U . n B 2 29 ASN 29 216 ? ? ? U . n B 2 30 LYS 30 217 ? ? ? U . n B 2 31 GLU 31 218 ? ? ? U . n B 2 32 LEU 32 219 ? ? ? U . n B 2 33 PRO 33 220 ? ? ? U . n B 2 34 ILE 34 221 ? ? ? U . n B 2 35 ASN 35 222 ? ? ? U . n B 2 36 HIS 36 223 223 HIS HIS U . n B 2 37 THR 37 224 224 THR THR U . n B 2 38 ILE 38 225 225 ILE ILE U . n B 2 39 LEU 39 226 226 LEU LEU U . n B 2 40 GLY 40 227 227 GLY GLY U . n B 2 41 LYS 41 228 228 LYS LYS U . n B 2 42 LEU 42 229 229 LEU LEU U . n B 2 43 GLN 43 230 230 GLN GLN U . n B 2 44 ASP 44 231 231 ASP ASP U . n B 2 45 VAL 45 232 232 VAL VAL U . n B 2 46 PHE 46 233 233 PHE PHE U . n B 2 47 ASN 47 234 234 ASN ASN U . n B 2 48 LEU 48 235 235 LEU LEU U . n B 2 49 LEU 49 236 ? ? ? U . n B 2 50 PRO 50 237 ? ? ? U . n B 2 51 ASN 51 238 ? ? ? U . n B 2 52 LEU 52 239 ? ? ? U . n B 2 53 GLY 53 240 ? ? ? U . n B 2 54 THR 54 241 ? ? ? U . n B 2 55 PRO 55 242 ? ? ? U . n B 2 56 ASP 56 243 ? ? ? U . n B 2 57 ASP 57 244 ? ? ? U . n B 2 58 ASP 58 245 ? ? ? U . n B 2 59 GLU 59 246 ? ? ? U . n B 2 60 ILE 60 247 ? ? ? U . n B 2 61 ASP 61 248 ? ? ? U . n B 2 62 VAL 62 249 ? ? ? U . n B 2 63 GLU 63 250 ? ? ? U . n B 2 64 ASN 64 251 ? ? ? U . n B 2 65 HIS 65 252 ? ? ? U . n B 2 66 ASP 66 253 ? ? ? U . n B 2 67 ARG 67 254 ? ? ? U . n B 2 68 ILE 68 255 ? ? ? U . n B 2 69 ASN 69 256 ? ? ? U . n B 2 70 ILE 70 257 ? ? ? U . n B 2 71 SER 71 258 ? ? ? U . n B 2 72 ASN 72 259 259 ASN ASN U . n B 2 73 ASN 73 260 260 ASN ASN U . n B 2 74 LEU 74 261 261 LEU LEU U . n B 2 75 GLN 75 262 262 GLN GLN U . n B 2 76 LYS 76 263 263 LYS LYS U . n B 2 77 ALA 77 264 264 ALA ALA U . n B 2 78 LEU 78 265 265 LEU LEU U . n B 2 79 THR 79 266 266 THR THR U . n B 2 80 VAL 80 267 267 VAL VAL U . n B 2 81 LYS 81 268 268 LYS LYS U . n B 2 82 THR 82 269 269 THR THR U . n B 2 83 ASN 83 270 270 ASN ASN U . n B 2 84 ASP 84 271 271 ASP ASP U . n B 2 85 GLU 85 272 272 GLU GLU U . n B 2 86 LEU 86 273 273 LEU LEU U . n B 2 87 MET 87 274 274 MET MET U . n B 2 88 VAL 88 275 275 VAL VAL U . n B 2 89 ILE 89 276 276 ILE ILE U . n B 2 90 TYR 90 277 277 TYR TYR U . n B 2 91 ILE 91 278 278 ILE ILE U . n B 2 92 SER 92 279 279 SER SER U . n B 2 93 ASN 93 280 280 ASN ASN U . n B 2 94 LEU 94 281 281 LEU LEU U . n B 2 95 VAL 95 282 282 VAL VAL U . n B 2 96 ARG 96 283 283 ARG ARG U . n B 2 97 SER 97 284 284 SER SER U . n B 2 98 ILE 98 285 285 ILE ILE U . n B 2 99 ILE 99 286 286 ILE ILE U . n B 2 100 ALA 100 287 287 ALA ALA U . n B 2 101 PHE 101 288 288 PHE PHE U . n B 2 102 ASP 102 289 289 ASP ASP U . n B 2 103 ASP 103 290 290 ASP ASP U . n B 2 104 LEU 104 291 291 LEU LEU U . n B 2 105 ILE 105 292 292 ILE ILE U . n B 2 106 GLU 106 293 293 GLU GLU U . n B 2 107 ASN 107 294 294 ASN ASN U . n B 2 108 LYS 108 295 295 LYS LYS U . n B 2 109 ILE 109 296 296 ILE ILE U . n B 2 110 GLN 110 297 297 GLN GLN U . n B 2 111 ASN 111 298 298 ASN ASN U . n B 2 112 LYS 112 299 299 LYS LYS U . n B 2 113 LYS 113 300 300 LYS LYS U . n B 2 114 ILE 114 301 301 ILE ILE U . n B 2 115 GLN 115 302 302 GLN GLN U . n B 2 116 GLU 116 303 303 GLU GLU U . n B 2 117 GLN 117 304 304 GLN GLN U . n B 2 118 ARG 118 305 305 ARG ARG U . n B 2 119 VAL 119 306 306 VAL VAL U . n B 2 120 LYS 120 307 307 LYS LYS U . n B 2 121 ASP 121 308 308 ASP ASP U . n C 3 1 GLY 1 360 360 GLY GLY O . n C 3 2 ASP 2 361 361 ASP ASP O . n C 3 3 GLN 3 362 362 GLN GLN O . n C 3 4 ILE 4 363 363 ILE ILE O . n C 3 5 THR 5 364 364 THR THR O . n C 3 6 LYS 6 365 365 LYS LYS O . n C 3 7 MET 7 366 366 MET MET O . n C 3 8 LYS 8 367 367 LYS LYS O . n C 3 9 ASP 9 368 368 ASP ASP O . n C 3 10 ARG 10 369 369 ARG ARG O . n C 3 11 LEU 11 370 370 LEU LEU O . n C 3 12 VAL 12 371 371 VAL VAL O . n C 3 13 GLU 13 372 372 GLU GLU O . n C 3 14 TRP 14 373 373 TRP TRP O . n C 3 15 ASN 15 374 374 ASN ASN O . n C 3 16 ASP 16 375 375 ASP ASP O . n C 3 17 GLN 17 376 376 GLN GLN O . n C 3 18 VAL 18 377 377 VAL VAL O . n C 3 19 GLU 19 378 378 GLU GLU O . n C 3 20 LYS 20 379 379 LYS LYS O . n C 3 21 LEU 21 380 380 LEU LEU O . n C 3 22 GLY 22 381 381 GLY GLY O . n C 3 23 LYS 23 382 382 LYS LYS O . n C 3 24 LYS 24 383 383 LYS LYS O . n C 3 25 MET 25 384 384 MET MET O . n C 3 26 GLU 26 385 385 GLU GLU O . n C 3 27 ALA 27 386 386 ALA ALA O . n C 3 28 ARG 28 387 387 ARG ARG O . n D 4 1 SER 1 409 409 SER SER P . n D 4 2 GLN 2 410 410 GLN GLN P . n D 4 3 LEU 3 411 411 LEU LEU P . n D 4 4 LEU 4 412 412 LEU LEU P . n D 4 5 ASN 5 413 413 ASN ASN P . n D 4 6 GLU 6 414 414 GLU GLU P . n D 4 7 TRP 7 415 415 TRP TRP P . n D 4 8 SER 8 416 416 SER SER P . n D 4 9 HIS 9 417 417 HIS HIS P . n D 4 10 ASN 10 418 418 ASN ASN P . n D 4 11 VAL 11 419 419 VAL VAL P . n D 4 12 ASP 12 420 420 ASP ASP P . n D 4 13 GLU 13 421 421 GLU GLU P . n D 4 14 LEU 14 422 422 LEU LEU P . n D 4 15 LEU 15 423 423 LEU LEU P . n D 4 16 GLU 16 424 424 GLU GLU P . n D 4 17 HIS 17 425 425 HIS HIS P . n D 4 18 ILE 18 426 426 ILE ILE P . n D 4 19 GLU 19 427 427 GLU GLU P . n D 4 20 THR 20 428 428 THR THR P . n D 4 21 ILE 21 429 429 ILE ILE P . n D 4 22 GLY 22 430 430 GLY GLY P . n D 4 23 HIS 23 431 431 HIS HIS P . n D 4 24 LEU 24 432 432 LEU LEU P . n D 4 25 ILE 25 433 433 ILE ILE P . n D 4 26 THR 26 434 434 THR THR P . n D 4 27 LYS 27 435 435 LYS LYS P . n D 4 28 GLU 28 436 436 GLU GLU P . n D 4 29 GLU 29 437 437 GLU GLU P . n D 4 30 ILE 30 438 438 ILE ILE P . n D 4 31 MET 31 439 439 MET MET P . n D 4 32 HIS 32 440 440 HIS HIS P . n D 4 33 GLY 33 441 441 GLY GLY P . n D 4 34 LEU 34 442 442 LEU LEU P . n E 5 1 ALA 1 407 407 ALA ALA Q . n E 5 2 THR 2 408 408 THR THR Q . n E 5 3 TYR 3 409 409 TYR TYR Q . n E 5 4 ASP 4 410 410 ASP ASP Q . n E 5 5 SER 5 411 411 SER SER Q . n E 5 6 ALA 6 412 412 ALA ALA Q . n E 5 7 LEU 7 413 413 LEU LEU Q . n E 5 8 GLU 8 414 414 GLU GLU Q . n E 5 9 LEU 9 415 415 LEU LEU Q . n E 5 10 VAL 10 416 416 VAL VAL Q . n E 5 11 GLY 11 417 417 GLY GLY Q . n E 5 12 GLN 12 418 418 GLN GLN Q . n E 5 13 LEU 13 419 419 LEU LEU Q . n E 5 14 ASN 14 420 420 ASN ASN Q . n E 5 15 LYS 15 421 421 LYS LYS Q . n E 5 16 VAL 16 422 422 VAL VAL Q . n E 5 17 VAL 17 423 423 VAL VAL Q . n E 5 18 ASP 18 424 424 ASP ASP Q . n E 5 19 GLN 19 425 425 GLN GLN Q . n E 5 20 LEU 20 426 426 LEU LEU Q . n E 5 21 PHE 21 427 427 PHE PHE Q . n E 5 22 GLU 22 428 428 GLU GLU Q . n E 5 23 LYS 23 429 429 LYS LYS Q . n E 5 24 ALA 24 430 430 ALA ALA Q . n E 5 25 SER 25 431 431 SER SER Q . n F 6 1 ASN 1 397 397 ASN ASN R . n F 6 2 ALA 2 398 398 ALA ALA R . n F 6 3 GLN 3 399 399 GLN GLN R . n F 6 4 TYR 4 400 400 TYR TYR R . n F 6 5 HIS 5 401 401 HIS HIS R . n F 6 6 LEU 6 402 402 LEU LEU R . n F 6 7 LEU 7 403 403 LEU LEU R . n F 6 8 VAL 8 404 404 VAL VAL R . n F 6 9 LYS 9 405 405 LYS LYS R . n F 6 10 GLN 10 406 406 GLN GLN R . n F 6 11 GLY 11 407 407 GLY GLY R . n F 6 12 ASP 12 408 408 ASP ASP R . n F 6 13 GLY 13 409 409 GLY GLY R . n F 6 14 LEU 14 410 410 LEU LEU R . n F 6 15 LEU 15 411 411 LEU LEU R . n F 6 16 THR 16 412 412 THR THR R . n F 6 17 LYS 17 413 413 LYS LYS R . n F 6 18 LEU 18 414 414 LEU LEU R . n F 6 19 GLN 19 415 415 GLN GLN R . n F 6 20 LYS 20 416 416 LYS LYS R . n F 6 21 TYR 21 417 417 TYR TYR R . n F 6 22 GLY 22 418 418 GLY GLY R . n F 6 23 ALA 23 419 419 ALA ALA R . n F 6 24 ALA 24 420 420 ALA ALA R . n F 6 25 VAL 25 421 421 VAL VAL R . n F 6 26 ARG 26 422 422 ARG ARG R . n G 7 1 GLU 1 455 455 GLU GLU S . n G 7 2 ASP 2 456 456 ASP ASP S . n G 7 3 PRO 3 457 457 PRO PRO S . n G 7 4 GLN 4 458 458 GLN GLN S . n G 7 5 GLN 5 459 459 GLN GLN S . n G 7 6 VAL 6 460 460 VAL VAL S . n G 7 7 PHE 7 461 461 PHE PHE S . n G 7 8 ASP 8 462 462 ASP ASP S . n G 7 9 GLU 9 463 463 GLU GLU S . n G 7 10 ARG 10 464 464 ARG ARG S . n G 7 11 ILE 11 465 465 ILE ILE S . n G 7 12 LYS 12 466 466 LYS LYS S . n G 7 13 PHE 13 467 467 PHE PHE S . n G 7 14 ALA 14 468 468 ALA ALA S . n G 7 15 ASN 15 469 469 ASN ASN S . n G 7 16 GLN 16 470 470 GLN GLN S . n G 7 17 LEU 17 471 471 LEU LEU S . n G 7 18 HIS 18 472 472 HIS HIS S . n G 7 19 ASP 19 473 473 ASP ASP S . n G 7 20 GLU 20 474 474 GLU GLU S . n G 7 21 TYR 21 475 475 TYR TYR S . n G 7 22 LEU 22 476 476 LEU LEU S . n G 7 23 VAL 23 477 477 VAL VAL S . n G 7 24 SER 24 478 478 SER SER S . n H 8 1 LYS 1 256 256 LYS LYS T . n H 8 2 THR 2 257 257 THR THR T . n H 8 3 ASN 3 258 258 ASN ASN T . n H 8 4 ILE 4 259 259 ILE ILE T . n H 8 5 ILE 5 260 260 ILE ILE T . n H 8 6 GLU 6 261 261 GLU GLU T . n H 8 7 LYS 7 262 262 LYS LYS T . n H 8 8 ALA 8 263 263 ALA ALA T . n H 8 9 MET 9 264 264 MET MET T . n H 8 10 ASP 10 265 265 ASP ASP T . n H 8 11 TYR 11 266 266 TYR TYR T . n H 8 12 ALA 12 267 267 ALA ALA T . n H 8 13 ILE 13 268 268 ILE ILE T . n H 8 14 SER 14 269 269 SER SER T . n H 8 15 ILE 15 270 270 ILE ILE T . n H 8 16 GLU 16 271 271 GLU GLU T . n H 8 17 ASN 17 272 272 ASN ASN T . n # _cell.entry_id 3J47 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3J47 _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? # _exptl.entry_id 3J47 _exptl.method 'ELECTRON MICROSCOPY' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews ? _exptl_crystal.density_percent_sol ? _exptl_crystal.description ? # _diffrn.id 1 _diffrn.ambient_temp ? _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _refine_hist.pdbx_refine_id 'ELECTRON MICROSCOPY' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2498 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 0 _refine_hist.number_atoms_total 2498 _refine_hist.d_res_high . _refine_hist.d_res_low . # _database_PDB_matrix.entry_id 3J47 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 3J47 _struct.title 'Formation of an intricate helical bundle dictates the assembly of the 26S proteasome lid' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3J47 _struct_keywords.pdbx_keywords 'PROTEIN BINDING' _struct_keywords.text 'alpha helix bundle, hybrid method, flexible fitting, PROTEIN BINDING' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? F N N 6 ? G N N 7 ? H N N 8 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP RPN11_YEAST P43588 1 YEEKEESNLAATKSMVKIAEQYSKRIEEEKELTEEELKTRYVGRQDPKKHLSETADETLENNIVSVLTA 230 ? 2 UNP RPN8_YEAST Q08723 2 ;IRLTNQLKSLKGLQSKLKDVVEYLDKVINKELPINHTILGKLQDVFNLLPNLGTPDDDEIDVENHDRINISNNLQKALTV KTNDELMVIYISNLVRSIIAFDDLIENKIQNKKIQEQRVKD ; 188 ? 3 UNP RPN9_YEAST Q04062 3 GDQITKMKDRLVEWNDQVEKLGKKMEAR 360 ? 4 UNP RPN5_YEAST Q12250 4 SQLLNEWSHNVDELLEHIETIGHLITKEEIMHGL 409 ? 5 UNP RPN6_YEAST Q12377 5 ATYDSALELVGQLNKVVDQLFEKAS 407 ? 6 UNP RPN7_YEAST Q06103 6 NAQYHLLVKQGDGLLTKLQKYGAAVR 397 ? 7 UNP RPN3_YEAST P40016 7 EDPQQVFDERIKFANQLHDEYLVS 455 ? 8 UNP RPN12_YEAST P32496 8 KTNIIEKAMDYAISIEN 256 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3J47 V 1 ? 69 ? P43588 230 ? 298 ? 230 298 2 2 3J47 U 1 ? 121 ? Q08723 188 ? 308 ? 188 308 3 3 3J47 O 1 ? 28 ? Q04062 360 ? 387 ? 360 387 4 4 3J47 P 1 ? 34 ? Q12250 409 ? 442 ? 409 442 5 5 3J47 Q 1 ? 25 ? Q12377 407 ? 431 ? 407 431 6 6 3J47 R 1 ? 26 ? Q06103 397 ? 422 ? 397 422 7 7 3J47 S 1 ? 24 ? P40016 455 ? 478 ? 455 478 8 8 3J47 T 1 ? 17 ? P32496 256 ? 272 ? 256 272 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details octameric _pdbx_struct_assembly.oligomeric_count 8 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 TYR A 1 ? ARG A 40 ? TYR V 230 ARG V 269 1 ? 40 HELX_P HELX_P2 2 LYS A 48 ? ALA A 69 ? LYS V 277 ALA V 298 1 ? 22 HELX_P HELX_P3 3 ARG B 2 ? ILE B 28 ? ARG U 189 ILE U 215 1 ? 27 HELX_P HELX_P4 4 THR B 37 ? LEU B 48 ? THR U 224 LEU U 235 1 ? 12 HELX_P HELX_P5 5 ASN B 73 ? ASP B 121 ? ASN U 260 ASP U 308 1 ? 49 HELX_P HELX_P6 6 ASP C 2 ? ARG C 28 ? ASP O 361 ARG O 387 1 ? 27 HELX_P HELX_P7 7 GLN D 2 ? LEU D 34 ? GLN P 410 LEU P 442 1 ? 33 HELX_P HELX_P8 8 THR E 2 ? SER E 25 ? THR Q 408 SER Q 431 1 ? 24 HELX_P HELX_P9 9 ALA F 2 ? ARG F 26 ? ALA R 398 ARG R 422 1 ? 25 HELX_P HELX_P10 10 ASP G 2 ? SER G 24 ? ASP S 456 SER S 478 1 ? 23 HELX_P HELX_P11 11 THR H 2 ? ASN H 17 ? THR T 257 ASN T 272 1 ? 16 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 CG1 Q VAL 416 ? ? CD1 R LEU 410 ? ? 0.52 2 1 NZ U LYS 228 ? ? C P THR 428 ? ? 0.55 3 1 CG U ASP 289 ? ? CD1 Q LEU 419 ? ? 0.55 4 1 OE2 V GLU 258 ? ? CD2 Q LEU 415 ? ? 0.56 5 1 CG U LEU 291 ? ? CD2 S TYR 475 ? ? 0.60 6 1 NZ V LYS 233 ? ? CA U GLN 193 ? ? 0.67 7 1 CD1 V LEU 261 ? ? C V LEU 280 ? ? 0.68 8 1 C U TYR 277 ? ? CE1 S PHE 461 ? ? 0.68 9 1 CD1 U ILE 296 ? ? CG Q LEU 426 ? ? 0.69 10 1 CG U LEU 200 ? ? CZ3 O TRP 373 ? ? 0.71 11 1 CD1 U LEU 197 ? ? CG1 O VAL 377 ? ? 0.75 12 1 O V LEU 261 ? ? CG V LEU 280 ? ? 0.76 13 1 NZ V LYS 277 ? ? CD U GLU 293 ? ? 0.77 14 1 OD2 U ASP 289 ? ? CD1 Q LEU 419 ? ? 0.78 15 1 O V LEU 261 ? ? CD2 V LEU 280 ? ? 0.78 16 1 CG2 Q VAL 416 ? ? CD2 R LEU 410 ? ? 0.78 17 1 CD1 V LEU 261 ? ? O V LEU 280 ? ? 0.79 18 1 NH2 O ARG 387 ? ? SD T MET 264 ? ? 0.80 19 1 CE V LYS 277 ? ? OE1 U GLU 293 ? ? 0.83 20 1 CE2 U TYR 277 ? ? O S PHE 461 ? ? 0.86 21 1 CD1 R LEU 411 ? ? CD2 S PHE 467 ? ? 0.86 22 1 CD1 U LEU 291 ? ? CE2 S TYR 475 ? ? 0.88 23 1 NZ V LYS 277 ? ? CG U GLU 293 ? ? 0.90 24 1 OE1 V GLU 264 ? ? N V LEU 280 ? ? 0.91 25 1 NZ U LYS 268 ? ? N P LEU 412 ? ? 0.91 26 1 CE1 Q TYR 409 ? ? O R LEU 403 ? ? 0.94 27 1 N V TYR 230 ? ? CE U LYS 195 ? ? 0.95 28 1 CG1 Q VAL 423 ? ? CG R TYR 417 ? ? 0.97 29 1 CG2 U VAL 232 ? ? CD2 P HIS 425 ? ? 0.98 30 1 CA V LEU 261 ? ? CD1 V LEU 280 ? ? 0.98 31 1 CG1 Q VAL 423 ? ? CD1 R TYR 417 ? ? 0.99 32 1 NZ V LYS 233 ? ? N U GLN 193 ? ? 1.01 33 1 NE2 R GLN 415 ? ? CE1 S PHE 467 ? ? 1.01 34 1 NH2 V ARG 269 ? ? CG1 Q VAL 422 ? ? 1.01 35 1 CG U TYR 277 ? ? CD2 S PHE 461 ? ? 1.02 36 1 CG U TYR 277 ? ? CG S PHE 461 ? ? 1.03 37 1 CA U TYR 277 ? ? CZ S PHE 461 ? ? 1.03 38 1 NZ U LYS 228 ? ? N P ILE 429 ? ? 1.03 39 1 CZ U TYR 277 ? ? O S PHE 461 ? ? 1.03 40 1 CE V LYS 277 ? ? CD U GLU 293 ? ? 1.04 41 1 ND2 Q ASN 420 ? ? CD R LYS 413 ? ? 1.06 42 1 NH1 V ARG 269 ? ? CA Q VAL 422 ? ? 1.07 43 1 CD V GLU 264 ? ? O V PRO 276 ? ? 1.10 44 1 CD2 U LEU 204 ? ? ND2 O ASN 374 ? ? 1.10 45 1 CA U TYR 277 ? ? CE1 S PHE 461 ? ? 1.11 46 1 CG2 U VAL 232 ? ? NE2 P HIS 425 ? ? 1.12 47 1 CD V LYS 233 ? ? C U ASN 192 ? ? 1.15 48 1 CE V LYS 233 ? ? N U GLN 193 ? ? 1.15 49 1 CG Q TYR 409 ? ? CD1 R LEU 403 ? ? 1.17 50 1 O U LEU 291 ? ? CZ S TYR 475 ? ? 1.19 51 1 CG U LEU 200 ? ? CH2 O TRP 373 ? ? 1.20 52 1 CB Q TYR 409 ? ? CD1 R LEU 403 ? ? 1.21 53 1 CE2 V TYR 230 ? ? O U LYS 195 ? ? 1.22 54 1 CG1 Q VAL 416 ? ? CG R LEU 410 ? ? 1.24 55 1 CG V GLU 264 ? ? O V PRO 276 ? ? 1.24 56 1 CD V LYS 233 ? ? O U ASN 192 ? ? 1.24 57 1 NH1 V ARG 269 ? ? C Q VAL 422 ? ? 1.26 58 1 OE2 V GLU 264 ? ? O V PRO 276 ? ? 1.26 59 1 CD1 U ILE 296 ? ? CD1 Q LEU 426 ? ? 1.26 60 1 CD2 U LEU 200 ? ? CZ3 O TRP 373 ? ? 1.28 61 1 O U LEU 291 ? ? OH S TYR 475 ? ? 1.28 62 1 CD2 U LEU 291 ? ? CD2 S TYR 475 ? ? 1.28 63 1 CG U LEU 291 ? ? CE2 S TYR 475 ? ? 1.29 64 1 C V LEU 261 ? ? CD1 V LEU 280 ? ? 1.29 65 1 CZ O ARG 387 ? ? SD T MET 264 ? ? 1.29 66 1 C V LEU 261 ? ? CG V LEU 280 ? ? 1.30 67 1 O U LEU 291 ? ? CE1 S TYR 475 ? ? 1.32 68 1 N V TYR 230 ? ? NZ U LYS 195 ? ? 1.34 69 1 CB U TYR 277 ? ? CG S PHE 461 ? ? 1.34 70 1 CD1 U TYR 277 ? ? CD2 S PHE 461 ? ? 1.35 71 1 O V THR 287 ? ? CZ U ARG 283 ? ? 1.37 72 1 N V ASN 291 ? ? NH1 U ARG 283 ? ? 1.37 73 1 C U LEU 291 ? ? CE1 S TYR 475 ? ? 1.37 74 1 CE U LYS 268 ? ? N P LEU 412 ? ? 1.40 75 1 NE2 R GLN 415 ? ? CD1 S PHE 467 ? ? 1.40 76 1 CE U LYS 228 ? ? N P ILE 429 ? ? 1.40 77 1 CD1 U LEU 200 ? ? CZ3 O TRP 373 ? ? 1.40 78 1 CE V LYS 233 ? ? C U ASN 192 ? ? 1.40 79 1 CE1 Q TYR 409 ? ? C R LEU 403 ? ? 1.40 80 1 CD R GLN 415 ? ? CE1 S PHE 467 ? ? 1.43 81 1 NE R ARG 422 ? ? OE2 S GLU 474 ? ? 1.44 82 1 CA U ILE 225 ? ? CD2 P LEU 432 ? ? 1.44 83 1 CD2 U TYR 277 ? ? CG S PHE 461 ? ? 1.45 84 1 CD V GLU 258 ? ? CD2 Q LEU 415 ? ? 1.45 85 1 CG U LEU 291 ? ? CG S TYR 475 ? ? 1.45 86 1 CD1 R LEU 411 ? ? CE2 S PHE 467 ? ? 1.45 87 1 NZ U LYS 228 ? ? CA P THR 428 ? ? 1.46 88 1 OD2 U ASP 289 ? ? CG Q LEU 419 ? ? 1.46 89 1 CB U TYR 277 ? ? CD2 S PHE 461 ? ? 1.47 90 1 CB Q VAL 416 ? ? CD2 R LEU 410 ? ? 1.47 91 1 OH Q TYR 409 ? ? N R GLN 406 ? ? 1.47 92 1 CD1 V LEU 266 ? ? NE2 Q GLN 425 ? ? 1.47 93 1 CD2 U LEU 200 ? ? CH2 O TRP 373 ? ? 1.47 94 1 CD1 U LEU 291 ? ? CD2 S TYR 475 ? ? 1.48 95 1 CD V LYS 277 ? ? OE2 U GLU 293 ? ? 1.49 96 1 CG V LEU 296 ? ? NH1 U ARG 189 ? ? 1.49 97 1 CB Q VAL 416 ? ? CG R LEU 410 ? ? 1.50 98 1 CE2 U TYR 277 ? ? C S PHE 461 ? ? 1.51 99 1 CB Q VAL 416 ? ? CD1 R LEU 410 ? ? 1.52 100 1 CB U TYR 277 ? ? CD1 S PHE 461 ? ? 1.53 101 1 CD2 V LEU 296 ? ? NH1 U ARG 189 ? ? 1.53 102 1 NH1 V ARG 269 ? ? O Q VAL 422 ? ? 1.54 103 1 CD1 U TYR 277 ? ? CE2 S PHE 461 ? ? 1.55 104 1 NE2 U GLN 230 ? ? SD O MET 366 ? ? 1.56 105 1 CG V LEU 261 ? ? O V LEU 280 ? ? 1.56 106 1 CA Q TYR 409 ? ? CD1 R LEU 403 ? ? 1.57 107 1 OG U SER 284 ? ? OH T TYR 266 ? ? 1.57 108 1 CG2 Q VAL 416 ? ? CG R LEU 410 ? ? 1.58 109 1 CG R LEU 411 ? ? CD2 S PHE 467 ? ? 1.58 110 1 O V THR 287 ? ? NE U ARG 283 ? ? 1.59 111 1 CD2 U LEU 291 ? ? CG S TYR 475 ? ? 1.59 112 1 NZ V LYS 233 ? ? C U GLN 193 ? ? 1.59 113 1 O U TYR 277 ? ? CE1 S PHE 461 ? ? 1.61 114 1 CG1 Q VAL 423 ? ? CD2 R TYR 417 ? ? 1.61 115 1 CE2 Q TYR 409 ? ? OE1 R GLN 406 ? ? 1.61 116 1 CB V LEU 296 ? ? NH1 U ARG 189 ? ? 1.61 117 1 C U LEU 291 ? ? CZ S TYR 475 ? ? 1.62 118 1 CD1 V LEU 261 ? ? N V SER 281 ? ? 1.62 119 1 OD1 U ASP 289 ? ? CD1 Q LEU 419 ? ? 1.62 120 1 CE U MET 274 ? ? CZ R TYR 400 ? ? 1.62 121 1 CA R VAL 404 ? ? NH2 S ARG 464 ? ? 1.63 122 1 CG1 Q VAL 423 ? ? CE1 R TYR 417 ? ? 1.63 123 1 CA V LEU 288 ? ? CD U ARG 283 ? ? 1.63 124 1 NH2 O ARG 387 ? ? CE T MET 264 ? ? 1.63 125 1 NZ U LYS 268 ? ? C P LEU 411 ? ? 1.64 126 1 CD1 Q TYR 409 ? ? CD1 R LEU 403 ? ? 1.64 127 1 CB U LEU 200 ? ? CH2 O TRP 373 ? ? 1.64 128 1 CZ V ARG 269 ? ? CG1 Q VAL 422 ? ? 1.65 129 1 CD1 Q TYR 409 ? ? CG R LEU 403 ? ? 1.65 130 1 CE U MET 274 ? ? CB S PRO 457 ? ? 1.66 131 1 O R VAL 404 ? ? NH2 S ARG 464 ? ? 1.66 132 1 CE2 Q TYR 409 ? ? CD R GLN 406 ? ? 1.67 133 1 CD1 U LEU 200 ? ? CH2 O TRP 373 ? ? 1.67 134 1 NZ V LYS 277 ? ? OE2 U GLU 293 ? ? 1.68 135 1 CD2 V LEU 261 ? ? CB V ALA 284 ? ? 1.69 136 1 CD1 Q TYR 409 ? ? CA R LEU 403 ? ? 1.69 137 1 OH U TYR 277 ? ? O S PHE 461 ? ? 1.70 138 1 N U ILE 278 ? ? CE1 S PHE 461 ? ? 1.70 139 1 N V LEU 261 ? ? CD1 V LEU 280 ? ? 1.72 140 1 C V LEU 261 ? ? CD2 V LEU 280 ? ? 1.72 141 1 O Q VAL 423 ? ? CE1 R TYR 417 ? ? 1.73 142 1 CG U TYR 277 ? ? CE2 S PHE 461 ? ? 1.73 143 1 CB U VAL 232 ? ? NE2 P HIS 425 ? ? 1.73 144 1 CG V LYS 233 ? ? CB U ASN 192 ? ? 1.73 145 1 CG Q ASN 420 ? ? CD R LYS 413 ? ? 1.73 146 1 CG U TYR 277 ? ? CD1 S PHE 461 ? ? 1.73 147 1 NH2 O ARG 387 ? ? CG T MET 264 ? ? 1.74 148 1 CB U TYR 277 ? ? CE2 S PHE 461 ? ? 1.74 149 1 CG1 U ILE 225 ? ? CG P LEU 432 ? ? 1.75 150 1 NZ U LYS 228 ? ? O P THR 428 ? ? 1.76 151 1 NH2 R ARG 422 ? ? CG S GLU 474 ? ? 1.77 152 1 CD2 U LEU 200 ? ? CE3 O TRP 373 ? ? 1.77 153 1 CD2 U TYR 277 ? ? CD1 S PHE 461 ? ? 1.77 154 1 NZ V LYS 277 ? ? OE1 U GLU 293 ? ? 1.77 155 1 OE2 V GLU 265 ? ? CG1 Q VAL 422 ? ? 1.78 156 1 NZ V LYS 233 ? ? C U ASN 192 ? ? 1.78 157 1 CG U ASP 289 ? ? CG Q LEU 419 ? ? 1.79 158 1 C U TYR 277 ? ? CZ S PHE 461 ? ? 1.79 159 1 OE1 V GLU 264 ? ? C V HIS 279 ? ? 1.79 160 1 NZ U LYS 203 ? ? CG2 P ILE 429 ? ? 1.79 161 1 OH Q TYR 409 ? ? CB R GLN 406 ? ? 1.80 162 1 CD2 R LEU 414 ? ? CD2 S LEU 471 ? ? 1.80 163 1 CB U TYR 277 ? ? CE1 S PHE 461 ? ? 1.80 164 1 CZ V ARG 269 ? ? O Q VAL 422 ? ? 1.80 165 1 C R VAL 404 ? ? NH2 S ARG 464 ? ? 1.81 166 1 CE U MET 274 ? ? OH R TYR 400 ? ? 1.81 167 1 CE V LYS 277 ? ? OE2 U GLU 293 ? ? 1.82 168 1 CD2 U LEU 291 ? ? CB S TYR 475 ? ? 1.82 169 1 CE1 U TYR 277 ? ? CG1 S ILE 465 ? ? 1.83 170 1 CD2 Q TYR 409 ? ? OE1 R GLN 406 ? ? 1.83 171 1 CD V ARG 269 ? ? OE1 Q GLN 425 ? ? 1.83 172 1 OD1 U ASP 289 ? ? CG Q LEU 419 ? ? 1.84 173 1 CB U ASP 289 ? ? CD1 Q LEU 419 ? ? 1.84 174 1 NE O ARG 387 ? ? SD T MET 264 ? ? 1.84 175 1 CD V LYS 233 ? ? CA U ASN 192 ? ? 1.84 176 1 CB Q ASN 420 ? ? CE R LYS 413 ? ? 1.85 177 1 C Q VAL 423 ? ? CE1 R TYR 417 ? ? 1.85 178 1 CD1 Q TYR 409 ? ? O R LEU 403 ? ? 1.86 179 1 O V LEU 261 ? ? CD1 V LEU 280 ? ? 1.88 180 1 CD2 V TYR 230 ? ? O U LYS 195 ? ? 1.88 181 1 C U TYR 277 ? ? CD1 S PHE 461 ? ? 1.88 182 1 CE V LYS 233 ? ? CA U GLN 193 ? ? 1.88 183 1 CD1 Q TYR 409 ? ? C R LEU 403 ? ? 1.88 184 1 OG1 V THR 268 ? ? CB V LYS 277 ? ? 1.89 185 1 OH U TYR 277 ? ? N S ILE 465 ? ? 1.89 186 1 CB U TYR 277 ? ? CZ S PHE 461 ? ? 1.89 187 1 CG2 S ILE 465 ? ? CD1 T TYR 266 ? ? 1.89 188 1 CE1 Q TYR 409 ? ? CA R LEU 403 ? ? 1.90 189 1 CG R GLN 415 ? ? CZ S PHE 467 ? ? 1.90 190 1 CD V LYS 277 ? ? CD U GLU 293 ? ? 1.90 191 1 OH Q TYR 409 ? ? CA R GLN 406 ? ? 1.90 192 1 N U ILE 292 ? ? CE1 S TYR 475 ? ? 1.90 193 1 OE2 V GLU 258 ? ? CG Q LEU 415 ? ? 1.90 194 1 CD1 U ILE 296 ? ? CD2 Q LEU 426 ? ? 1.91 195 1 CD2 R LEU 411 ? ? CG S PHE 467 ? ? 1.91 196 1 CD V GLU 264 ? ? N V LEU 280 ? ? 1.91 197 1 CB U LYS 268 ? ? CD2 P LEU 411 ? ? 1.91 198 1 OD2 U ASP 289 ? ? CB Q LEU 419 ? ? 1.91 199 1 N V TYR 230 ? ? CD U LYS 195 ? ? 1.91 200 1 CZ U TYR 277 ? ? C S PHE 461 ? ? 1.92 201 1 O V THR 287 ? ? NH2 U ARG 283 ? ? 1.92 202 1 CD U LYS 268 ? ? CB P LEU 411 ? ? 1.92 203 1 CD1 U LEU 190 ? ? CE O MET 384 ? ? 1.92 204 1 O Q VAL 423 ? ? OH R TYR 417 ? ? 1.92 205 1 CB U VAL 232 ? ? CD2 P HIS 425 ? ? 1.92 206 1 CG R LEU 411 ? ? CE2 S PHE 467 ? ? 1.92 207 1 CD1 U LEU 226 ? ? CE O MET 366 ? ? 1.93 208 1 CA V LEU 261 ? ? CG V LEU 280 ? ? 1.93 209 1 OE2 V GLU 264 ? ? N V HIS 279 ? ? 1.93 210 1 CZ V ARG 269 ? ? C Q VAL 422 ? ? 1.93 211 1 CE U LYS 228 ? ? C P THR 428 ? ? 1.93 212 1 CG R GLN 415 ? ? CE1 S PHE 467 ? ? 1.94 213 1 CZ U PHE 288 ? ? CD1 S LEU 471 ? ? 1.95 214 1 CA Q VAL 416 ? ? CD2 R LEU 410 ? ? 1.96 215 1 CG U PHE 233 ? ? CD O ARG 369 ? ? 1.96 216 1 CG V GLU 258 ? ? CD1 U ILE 286 ? ? 1.97 217 1 NH2 R ARG 422 ? ? CD S GLU 474 ? ? 1.97 218 1 OH Q TYR 409 ? ? CG R GLN 406 ? ? 1.98 219 1 OE2 V GLU 264 ? ? C V PRO 276 ? ? 1.98 220 1 CA U TYR 277 ? ? CE2 S PHE 461 ? ? 1.98 221 1 O V LEU 261 ? ? CB V LEU 280 ? ? 1.99 222 1 O V LEU 288 ? ? NH1 U ARG 283 ? ? 1.99 223 1 CD1 Q TYR 409 ? ? CB R LEU 403 ? ? 1.99 224 1 OE1 V GLU 264 ? ? CA V LEU 280 ? ? 1.99 225 1 CD2 V LEU 296 ? ? CZ U ARG 189 ? ? 2.00 226 1 CD2 U TYR 277 ? ? CB S PHE 461 ? ? 2.00 227 1 CG1 Q VAL 416 ? ? CB R LEU 410 ? ? 2.00 228 1 CG V GLU 264 ? ? C V PRO 276 ? ? 2.00 229 1 CG2 Q VAL 416 ? ? CB R LEU 410 ? ? 2.01 230 1 OH U TYR 277 ? ? O S ASP 462 ? ? 2.01 231 1 N V ASN 291 ? ? CZ U ARG 283 ? ? 2.01 232 1 CE U MET 274 ? ? CE2 R TYR 400 ? ? 2.01 233 1 CG1 U ILE 296 ? ? CD1 Q LEU 426 ? ? 2.01 234 1 CZ V ARG 269 ? ? CA Q VAL 422 ? ? 2.02 235 1 O Q VAL 423 ? ? CZ R TYR 417 ? ? 2.02 236 1 CB Q TYR 409 ? ? CG R LEU 403 ? ? 2.02 237 1 NE R ARG 422 ? ? CD S GLU 474 ? ? 2.03 238 1 CD1 V LEU 261 ? ? CA V LEU 280 ? ? 2.03 239 1 NZ V LYS 277 ? ? CB U GLU 293 ? ? 2.03 240 1 CD2 U TYR 277 ? ? CA S PHE 461 ? ? 2.03 241 1 NZ U LYS 295 ? ? CB S SER 478 ? ? 2.04 242 1 O V GLU 260 ? ? CD1 V LEU 280 ? ? 2.04 243 1 CG U LEU 226 ? ? CE O MET 366 ? ? 2.04 244 1 CZ Q TYR 409 ? ? CB R GLN 406 ? ? 2.04 245 1 CD2 U LEU 200 ? ? CZ2 O TRP 373 ? ? 2.04 246 1 CZ R ARG 422 ? ? CD S GLU 474 ? ? 2.04 247 1 CG Q TYR 409 ? ? CG R LEU 403 ? ? 2.05 248 1 NZ U LYS 268 ? ? N P LEU 411 ? ? 2.05 249 1 CE V LYS 233 ? ? O U ASN 192 ? ? 2.05 250 1 CG1 U VAL 282 ? ? CD2 Q LEU 415 ? ? 2.06 251 1 N U VAL 232 ? ? NE2 P HIS 425 ? ? 2.06 252 1 CG1 Q VAL 423 ? ? CE2 R TYR 417 ? ? 2.06 253 1 CA U TYR 277 ? ? CD1 S PHE 461 ? ? 2.06 254 1 CA U VAL 232 ? ? NE2 P HIS 425 ? ? 2.06 255 1 O U LYS 228 ? ? CE1 P HIS 425 ? ? 2.06 256 1 CG1 U ILE 296 ? ? CG Q LEU 426 ? ? 2.07 257 1 SD U MET 274 ? ? CB S PRO 457 ? ? 2.07 258 1 CD V LYS 277 ? ? OE1 U GLU 293 ? ? 2.07 259 1 CG1 Q VAL 423 ? ? CZ R TYR 417 ? ? 2.08 260 1 CE1 U PHE 288 ? ? O S LEU 471 ? ? 2.08 261 1 CG U LEU 204 ? ? ND2 O ASN 374 ? ? 2.08 262 1 CD1 U ILE 296 ? ? CB Q LEU 426 ? ? 2.09 263 1 CD2 V LEU 296 ? ? CD U ARG 189 ? ? 2.09 264 1 O U TYR 277 ? ? CZ S PHE 461 ? ? 2.09 265 1 CZ R ARG 422 ? ? OE2 S GLU 474 ? ? 2.09 266 1 CD1 V LEU 288 ? ? CB U ARG 283 ? ? 2.09 267 1 CA U LEU 291 ? ? CZ S TYR 475 ? ? 2.10 268 1 NH2 V ARG 269 ? ? CB Q VAL 422 ? ? 2.10 269 1 N U ILE 278 ? ? CD1 S PHE 461 ? ? 2.10 270 1 CB U ILE 225 ? ? CD2 P LEU 432 ? ? 2.11 271 1 CD2 U LEU 265 ? ? CD1 P TRP 415 ? ? 2.11 272 1 ND2 Q ASN 420 ? ? CG R LYS 413 ? ? 2.11 273 1 CG2 S ILE 465 ? ? CG T TYR 266 ? ? 2.11 274 1 CB U LEU 291 ? ? CD2 S TYR 475 ? ? 2.11 275 1 CG Q ASN 420 ? ? CE R LYS 413 ? ? 2.12 276 1 NZ V LYS 233 ? ? CB U GLN 193 ? ? 2.12 277 1 CG U LEU 200 ? ? CE3 O TRP 373 ? ? 2.12 278 1 N U ILE 225 ? ? CD2 P LEU 432 ? ? 2.12 279 1 OH U TYR 277 ? ? C S ASP 462 ? ? 2.12 280 1 C U LEU 291 ? ? OH S TYR 475 ? ? 2.12 281 1 C V GLU 260 ? ? CD1 V LEU 280 ? ? 2.12 282 1 CB U ILE 296 ? ? CD1 Q LEU 426 ? ? 2.13 283 1 O R LEU 411 ? ? CZ S PHE 467 ? ? 2.13 284 1 CD1 U PHE 233 ? ? CD O ARG 369 ? ? 2.13 285 1 CA V TYR 230 ? ? CE U LYS 195 ? ? 2.13 286 1 CB V GLU 264 ? ? CB V LEU 280 ? ? 2.13 287 1 CD2 U PHE 288 ? ? CD2 S LEU 471 ? ? 2.13 288 1 CE2 Q TYR 409 ? ? CG R GLN 406 ? ? 2.14 289 1 CD U LYS 268 ? ? N P LEU 412 ? ? 2.14 290 1 NZ V LYS 233 ? ? O U ASN 192 ? ? 2.14 291 1 CG1 U ILE 225 ? ? CD2 P LEU 432 ? ? 2.15 292 1 CD U LYS 268 ? ? C P LEU 411 ? ? 2.15 293 1 CE2 U TYR 277 ? ? CA S PHE 461 ? ? 2.15 294 1 CD1 U LEU 200 ? ? CE3 O TRP 373 ? ? 2.15 295 1 OE2 V GLU 265 ? ? NH2 V ARG 269 ? ? 2.15 296 1 CG2 U ILE 285 ? ? CD2 Q LEU 419 ? ? 2.16 297 1 CD2 V LEU 288 ? ? CG2 T ILE 270 ? ? 2.16 298 1 CG U LEU 291 ? ? CZ S TYR 475 ? ? 2.16 299 1 CA Q VAL 416 ? ? CD1 R LEU 410 ? ? 2.16 300 1 O V THR 287 ? ? NH1 U ARG 283 ? ? 2.16 301 1 CB Q VAL 423 ? ? CD1 R TYR 417 ? ? 2.16 302 1 CD2 U TYR 277 ? ? O S PHE 461 ? ? 2.16 303 1 CD R ARG 422 ? ? OE2 S GLU 474 ? ? 2.16 304 1 CE1 V TYR 251 ? ? OG U SER 279 ? ? 2.17 305 1 CD1 U PHE 288 ? ? CG S LEU 471 ? ? 2.17 306 1 CD2 U TYR 277 ? ? C S PHE 461 ? ? 2.17 307 1 CG U LEU 229 ? ? NH2 O ARG 369 ? ? 2.17 308 1 CB V LEU 261 ? ? O V LEU 280 ? ? 2.17 309 1 CG R LEU 411 ? ? CG S PHE 467 ? ? 2.17 310 1 CG2 U VAL 232 ? ? CG P HIS 425 ? ? 2.18 311 1 CZ Q TYR 409 ? ? O R LEU 403 ? ? 2.18 312 1 NH1 V ARG 269 ? ? CB Q VAL 422 ? ? 2.18 313 1 CD V LYS 233 ? ? N U GLN 193 ? ? 2.18 314 1 O Q GLU 428 ? ? OG Q SER 431 ? ? 2.18 315 1 CG V LEU 261 ? ? C V LEU 280 ? ? 2.18 316 1 ND2 Q ASN 420 ? ? CE R LYS 413 ? ? 2.18 317 1 CD2 R LEU 411 ? ? CB S PHE 467 ? ? 2.18 318 1 NZ U LYS 268 ? ? CA P LEU 411 ? ? 2.19 319 1 O S TYR 475 ? ? OG S SER 478 ? ? 2.19 320 1 CB Q VAL 423 ? ? CG R TYR 417 ? ? 2.19 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 C V LEU 238 ? ? N V ALA 239 ? ? 1.498 1.336 0.162 0.023 Y 2 1 N V ALA 239 ? ? CA V ALA 239 ? ? 1.176 1.459 -0.283 0.020 N 3 1 CD V PRO 276 ? ? N V PRO 276 ? ? 1.635 1.474 0.161 0.014 N 4 1 CE2 O TRP 373 ? ? CD2 O TRP 373 ? ? 1.329 1.409 -0.080 0.012 N 5 1 N Q ALA 407 ? ? CA Q ALA 407 ? ? 1.311 1.459 -0.148 0.020 N 6 1 CD S PRO 457 ? ? N S PRO 457 ? ? 1.695 1.474 0.221 0.014 N # _pdbx_database_remark.id 0 _pdbx_database_remark.text ;THIS ENTRY 3J47 CONTAINS A STRUCTURAL MODEL FIT TO AN ELECTRON MICROSCOPY MAP (EMD-2165) DETERMINED ORIGINALLY BY AUTHORS: F.BECK, P.UNVERDORBEN, S.BOHN, A.SCHWEITZER, G.PFEIFER, E.SAKATA, S.NICKELL, J.M.PLITZKO, E.VILLA, W.BAUMEISTER, F.FORSTER ; # _em_3d_fitting.id 1 _em_3d_fitting.entry_id 3J47 _em_3d_fitting.ref_protocol 'FLEXIBLE FIT' _em_3d_fitting.ref_space REAL _em_3d_fitting.overall_b_value ? _em_3d_fitting.target_criteria 'Cross-correlation coefficient' _em_3d_fitting.details ;METHOD--Hybrid method + flexible fitting REFINEMENT PROTOCOL--Hybrid method DETAILS--Initial model was done with an in house hybrid method (EMTEGRATOR) that integrates topology constraints with EM-map derived constraints. iMODFIT was then used for final flexible fitting. ; _em_3d_fitting.method ? # _em_3d_reconstruction.entry_id 3J47 _em_3d_reconstruction.id 1 _em_3d_reconstruction.resolution_method 'FSC 0.5 CUT-OFF' _em_3d_reconstruction.resolution 7.4 _em_3d_reconstruction.symmetry_type POINT _em_3d_reconstruction.num_particles 2464694 _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.method ? _em_3d_reconstruction.algorithm ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.magnification_calibration ? _em_3d_reconstruction.details ? # _em_buffer.id 1 _em_buffer.pH 7.1 _em_buffer.specimen_id 1 _em_buffer.name ? _em_buffer.details ? # _em_entity_assembly.id 1 _em_entity_assembly.name '26S proteasome' _em_entity_assembly.type COMPLEX _em_entity_assembly.parent_id 0 _em_entity_assembly.synonym ? _em_entity_assembly.details ? _em_entity_assembly.oligomeric_details ? # _em_imaging.entry_id 3J47 _em_imaging.id 1 _em_imaging.nominal_magnification 150000 _em_imaging.nominal_defocus_min 1500 _em_imaging.nominal_defocus_max 3500 _em_imaging.microscope_model 'FEI TITAN KRIOS' _em_imaging.mode 'BRIGHT FIELD' _em_imaging.date 2012-03-15 _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.accelerating_voltage 200 _em_imaging.specimen_id 1 _em_imaging.citation_id ? _em_imaging.temperature ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.nominal_cs ? _em_imaging.calibrated_magnification ? _em_imaging.astigmatism ? _em_imaging.details ? _em_imaging.detector_distance ? _em_imaging.electron_beam_tilt_params ? _em_imaging.recording_temperature_maximum ? _em_imaging.recording_temperature_minimum ? _em_imaging.specimen_holder_type ? _em_imaging.specimen_holder_model ? # _em_vitrification.entry_id 3J47 _em_vitrification.id 1 _em_vitrification.instrument 'HOMEMADE PLUNGER' _em_vitrification.cryogen_name ETHANE _em_vitrification.specimen_id 1 _em_vitrification.citation_id ? _em_vitrification.humidity ? _em_vitrification.method ? _em_vitrification.temp ? _em_vitrification.time_resolved_state ? _em_vitrification.details ? # _em_experiment.entry_id 3J47 _em_experiment.id 1 _em_experiment.aggregation_state PARTICLE _em_experiment.entity_assembly_id 1 _em_experiment.reconstruction_method 'SINGLE PARTICLE' # _em_single_particle_entity.entry_id 3J47 _em_single_particle_entity.id 1 _em_single_particle_entity.point_symmetry C1 _em_single_particle_entity.image_processing_id 1 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 V TYR 270 ? A TYR 41 2 1 Y 1 V VAL 271 ? A VAL 42 3 1 Y 1 V GLY 272 ? A GLY 43 4 1 Y 1 V ARG 273 ? A ARG 44 5 1 Y 1 V GLN 274 ? A GLN 45 6 1 Y 1 V ASP 275 ? A ASP 46 7 1 Y 1 U ASN 216 ? B ASN 29 8 1 Y 1 U LYS 217 ? B LYS 30 9 1 Y 1 U GLU 218 ? B GLU 31 10 1 Y 1 U LEU 219 ? B LEU 32 11 1 Y 1 U PRO 220 ? B PRO 33 12 1 Y 1 U ILE 221 ? B ILE 34 13 1 Y 1 U ASN 222 ? B ASN 35 14 1 Y 1 U LEU 236 ? B LEU 49 15 1 Y 1 U PRO 237 ? B PRO 50 16 1 Y 1 U ASN 238 ? B ASN 51 17 1 Y 1 U LEU 239 ? B LEU 52 18 1 Y 1 U GLY 240 ? B GLY 53 19 1 Y 1 U THR 241 ? B THR 54 20 1 Y 1 U PRO 242 ? B PRO 55 21 1 Y 1 U ASP 243 ? B ASP 56 22 1 Y 1 U ASP 244 ? B ASP 57 23 1 Y 1 U ASP 245 ? B ASP 58 24 1 Y 1 U GLU 246 ? B GLU 59 25 1 Y 1 U ILE 247 ? B ILE 60 26 1 Y 1 U ASP 248 ? B ASP 61 27 1 Y 1 U VAL 249 ? B VAL 62 28 1 Y 1 U GLU 250 ? B GLU 63 29 1 Y 1 U ASN 251 ? B ASN 64 30 1 Y 1 U HIS 252 ? B HIS 65 31 1 Y 1 U ASP 253 ? B ASP 66 32 1 Y 1 U ARG 254 ? B ARG 67 33 1 Y 1 U ILE 255 ? B ILE 68 34 1 Y 1 U ASN 256 ? B ASN 69 35 1 Y 1 U ILE 257 ? B ILE 70 36 1 Y 1 U SER 258 ? B SER 71 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 GLN N N N N 74 GLN CA C N S 75 GLN C C N N 76 GLN O O N N 77 GLN CB C N N 78 GLN CG C N N 79 GLN CD C N N 80 GLN OE1 O N N 81 GLN NE2 N N N 82 GLN OXT O N N 83 GLN H H N N 84 GLN H2 H N N 85 GLN HA H N N 86 GLN HB2 H N N 87 GLN HB3 H N N 88 GLN HG2 H N N 89 GLN HG3 H N N 90 GLN HE21 H N N 91 GLN HE22 H N N 92 GLN HXT H N N 93 GLU N N N N 94 GLU CA C N S 95 GLU C C N N 96 GLU O O N N 97 GLU CB C N N 98 GLU CG C N N 99 GLU CD C N N 100 GLU OE1 O N N 101 GLU OE2 O N N 102 GLU OXT O N N 103 GLU H H N N 104 GLU H2 H N N 105 GLU HA H N N 106 GLU HB2 H N N 107 GLU HB3 H N N 108 GLU HG2 H N N 109 GLU HG3 H N N 110 GLU HE2 H N N 111 GLU HXT H N N 112 GLY N N N N 113 GLY CA C N N 114 GLY C C N N 115 GLY O O N N 116 GLY OXT O N N 117 GLY H H N N 118 GLY H2 H N N 119 GLY HA2 H N N 120 GLY HA3 H N N 121 GLY HXT H N N 122 HIS N N N N 123 HIS CA C N S 124 HIS C C N N 125 HIS O O N N 126 HIS CB C N N 127 HIS CG C Y N 128 HIS ND1 N Y N 129 HIS CD2 C Y N 130 HIS CE1 C Y N 131 HIS NE2 N Y N 132 HIS OXT O N N 133 HIS H H N N 134 HIS H2 H N N 135 HIS HA H N N 136 HIS HB2 H N N 137 HIS HB3 H N N 138 HIS HD1 H N N 139 HIS HD2 H N N 140 HIS HE1 H N N 141 HIS HE2 H N N 142 HIS HXT H N N 143 ILE N N N N 144 ILE CA C N S 145 ILE C C N N 146 ILE O O N N 147 ILE CB C N S 148 ILE CG1 C N N 149 ILE CG2 C N N 150 ILE CD1 C N N 151 ILE OXT O N N 152 ILE H H N N 153 ILE H2 H N N 154 ILE HA H N N 155 ILE HB H N N 156 ILE HG12 H N N 157 ILE HG13 H N N 158 ILE HG21 H N N 159 ILE HG22 H N N 160 ILE HG23 H N N 161 ILE HD11 H N N 162 ILE HD12 H N N 163 ILE HD13 H N N 164 ILE HXT H N N 165 LEU N N N N 166 LEU CA C N S 167 LEU C C N N 168 LEU O O N N 169 LEU CB C N N 170 LEU CG C N N 171 LEU CD1 C N N 172 LEU CD2 C N N 173 LEU OXT O N N 174 LEU H H N N 175 LEU H2 H N N 176 LEU HA H N N 177 LEU HB2 H N N 178 LEU HB3 H N N 179 LEU HG H N N 180 LEU HD11 H N N 181 LEU HD12 H N N 182 LEU HD13 H N N 183 LEU HD21 H N N 184 LEU HD22 H N N 185 LEU HD23 H N N 186 LEU HXT H N N 187 LYS N N N N 188 LYS CA C N S 189 LYS C C N N 190 LYS O O N N 191 LYS CB C N N 192 LYS CG C N N 193 LYS CD C N N 194 LYS CE C N N 195 LYS NZ N N N 196 LYS OXT O N N 197 LYS H H N N 198 LYS H2 H N N 199 LYS HA H N N 200 LYS HB2 H N N 201 LYS HB3 H N N 202 LYS HG2 H N N 203 LYS HG3 H N N 204 LYS HD2 H N N 205 LYS HD3 H N N 206 LYS HE2 H N N 207 LYS HE3 H N N 208 LYS HZ1 H N N 209 LYS HZ2 H N N 210 LYS HZ3 H N N 211 LYS HXT H N N 212 MET N N N N 213 MET CA C N S 214 MET C C N N 215 MET O O N N 216 MET CB C N N 217 MET CG C N N 218 MET SD S N N 219 MET CE C N N 220 MET OXT O N N 221 MET H H N N 222 MET H2 H N N 223 MET HA H N N 224 MET HB2 H N N 225 MET HB3 H N N 226 MET HG2 H N N 227 MET HG3 H N N 228 MET HE1 H N N 229 MET HE2 H N N 230 MET HE3 H N N 231 MET HXT H N N 232 PHE N N N N 233 PHE CA C N S 234 PHE C C N N 235 PHE O O N N 236 PHE CB C N N 237 PHE CG C Y N 238 PHE CD1 C Y N 239 PHE CD2 C Y N 240 PHE CE1 C Y N 241 PHE CE2 C Y N 242 PHE CZ C Y N 243 PHE OXT O N N 244 PHE H H N N 245 PHE H2 H N N 246 PHE HA H N N 247 PHE HB2 H N N 248 PHE HB3 H N N 249 PHE HD1 H N N 250 PHE HD2 H N N 251 PHE HE1 H N N 252 PHE HE2 H N N 253 PHE HZ H N N 254 PHE HXT H N N 255 PRO N N N N 256 PRO CA C N S 257 PRO C C N N 258 PRO O O N N 259 PRO CB C N N 260 PRO CG C N N 261 PRO CD C N N 262 PRO OXT O N N 263 PRO H H N N 264 PRO HA H N N 265 PRO HB2 H N N 266 PRO HB3 H N N 267 PRO HG2 H N N 268 PRO HG3 H N N 269 PRO HD2 H N N 270 PRO HD3 H N N 271 PRO HXT H N N 272 SER N N N N 273 SER CA C N S 274 SER C C N N 275 SER O O N N 276 SER CB C N N 277 SER OG O N N 278 SER OXT O N N 279 SER H H N N 280 SER H2 H N N 281 SER HA H N N 282 SER HB2 H N N 283 SER HB3 H N N 284 SER HG H N N 285 SER HXT H N N 286 THR N N N N 287 THR CA C N S 288 THR C C N N 289 THR O O N N 290 THR CB C N R 291 THR OG1 O N N 292 THR CG2 C N N 293 THR OXT O N N 294 THR H H N N 295 THR H2 H N N 296 THR HA H N N 297 THR HB H N N 298 THR HG1 H N N 299 THR HG21 H N N 300 THR HG22 H N N 301 THR HG23 H N N 302 THR HXT H N N 303 TRP N N N N 304 TRP CA C N S 305 TRP C C N N 306 TRP O O N N 307 TRP CB C N N 308 TRP CG C Y N 309 TRP CD1 C Y N 310 TRP CD2 C Y N 311 TRP NE1 N Y N 312 TRP CE2 C Y N 313 TRP CE3 C Y N 314 TRP CZ2 C Y N 315 TRP CZ3 C Y N 316 TRP CH2 C Y N 317 TRP OXT O N N 318 TRP H H N N 319 TRP H2 H N N 320 TRP HA H N N 321 TRP HB2 H N N 322 TRP HB3 H N N 323 TRP HD1 H N N 324 TRP HE1 H N N 325 TRP HE3 H N N 326 TRP HZ2 H N N 327 TRP HZ3 H N N 328 TRP HH2 H N N 329 TRP HXT H N N 330 TYR N N N N 331 TYR CA C N S 332 TYR C C N N 333 TYR O O N N 334 TYR CB C N N 335 TYR CG C Y N 336 TYR CD1 C Y N 337 TYR CD2 C Y N 338 TYR CE1 C Y N 339 TYR CE2 C Y N 340 TYR CZ C Y N 341 TYR OH O N N 342 TYR OXT O N N 343 TYR H H N N 344 TYR H2 H N N 345 TYR HA H N N 346 TYR HB2 H N N 347 TYR HB3 H N N 348 TYR HD1 H N N 349 TYR HD2 H N N 350 TYR HE1 H N N 351 TYR HE2 H N N 352 TYR HH H N N 353 TYR HXT H N N 354 VAL N N N N 355 VAL CA C N S 356 VAL C C N N 357 VAL O O N N 358 VAL CB C N N 359 VAL CG1 C N N 360 VAL CG2 C N N 361 VAL OXT O N N 362 VAL H H N N 363 VAL H2 H N N 364 VAL HA H N N 365 VAL HB H N N 366 VAL HG11 H N N 367 VAL HG12 H N N 368 VAL HG13 H N N 369 VAL HG21 H N N 370 VAL HG22 H N N 371 VAL HG23 H N N 372 VAL HXT H N N 373 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 GLN N CA sing N N 70 GLN N H sing N N 71 GLN N H2 sing N N 72 GLN CA C sing N N 73 GLN CA CB sing N N 74 GLN CA HA sing N N 75 GLN C O doub N N 76 GLN C OXT sing N N 77 GLN CB CG sing N N 78 GLN CB HB2 sing N N 79 GLN CB HB3 sing N N 80 GLN CG CD sing N N 81 GLN CG HG2 sing N N 82 GLN CG HG3 sing N N 83 GLN CD OE1 doub N N 84 GLN CD NE2 sing N N 85 GLN NE2 HE21 sing N N 86 GLN NE2 HE22 sing N N 87 GLN OXT HXT sing N N 88 GLU N CA sing N N 89 GLU N H sing N N 90 GLU N H2 sing N N 91 GLU CA C sing N N 92 GLU CA CB sing N N 93 GLU CA HA sing N N 94 GLU C O doub N N 95 GLU C OXT sing N N 96 GLU CB CG sing N N 97 GLU CB HB2 sing N N 98 GLU CB HB3 sing N N 99 GLU CG CD sing N N 100 GLU CG HG2 sing N N 101 GLU CG HG3 sing N N 102 GLU CD OE1 doub N N 103 GLU CD OE2 sing N N 104 GLU OE2 HE2 sing N N 105 GLU OXT HXT sing N N 106 GLY N CA sing N N 107 GLY N H sing N N 108 GLY N H2 sing N N 109 GLY CA C sing N N 110 GLY CA HA2 sing N N 111 GLY CA HA3 sing N N 112 GLY C O doub N N 113 GLY C OXT sing N N 114 GLY OXT HXT sing N N 115 HIS N CA sing N N 116 HIS N H sing N N 117 HIS N H2 sing N N 118 HIS CA C sing N N 119 HIS CA CB sing N N 120 HIS CA HA sing N N 121 HIS C O doub N N 122 HIS C OXT sing N N 123 HIS CB CG sing N N 124 HIS CB HB2 sing N N 125 HIS CB HB3 sing N N 126 HIS CG ND1 sing Y N 127 HIS CG CD2 doub Y N 128 HIS ND1 CE1 doub Y N 129 HIS ND1 HD1 sing N N 130 HIS CD2 NE2 sing Y N 131 HIS CD2 HD2 sing N N 132 HIS CE1 NE2 sing Y N 133 HIS CE1 HE1 sing N N 134 HIS NE2 HE2 sing N N 135 HIS OXT HXT sing N N 136 ILE N CA sing N N 137 ILE N H sing N N 138 ILE N H2 sing N N 139 ILE CA C sing N N 140 ILE CA CB sing N N 141 ILE CA HA sing N N 142 ILE C O doub N N 143 ILE C OXT sing N N 144 ILE CB CG1 sing N N 145 ILE CB CG2 sing N N 146 ILE CB HB sing N N 147 ILE CG1 CD1 sing N N 148 ILE CG1 HG12 sing N N 149 ILE CG1 HG13 sing N N 150 ILE CG2 HG21 sing N N 151 ILE CG2 HG22 sing N N 152 ILE CG2 HG23 sing N N 153 ILE CD1 HD11 sing N N 154 ILE CD1 HD12 sing N N 155 ILE CD1 HD13 sing N N 156 ILE OXT HXT sing N N 157 LEU N CA sing N N 158 LEU N H sing N N 159 LEU N H2 sing N N 160 LEU CA C sing N N 161 LEU CA CB sing N N 162 LEU CA HA sing N N 163 LEU C O doub N N 164 LEU C OXT sing N N 165 LEU CB CG sing N N 166 LEU CB HB2 sing N N 167 LEU CB HB3 sing N N 168 LEU CG CD1 sing N N 169 LEU CG CD2 sing N N 170 LEU CG HG sing N N 171 LEU CD1 HD11 sing N N 172 LEU CD1 HD12 sing N N 173 LEU CD1 HD13 sing N N 174 LEU CD2 HD21 sing N N 175 LEU CD2 HD22 sing N N 176 LEU CD2 HD23 sing N N 177 LEU OXT HXT sing N N 178 LYS N CA sing N N 179 LYS N H sing N N 180 LYS N H2 sing N N 181 LYS CA C sing N N 182 LYS CA CB sing N N 183 LYS CA HA sing N N 184 LYS C O doub N N 185 LYS C OXT sing N N 186 LYS CB CG sing N N 187 LYS CB HB2 sing N N 188 LYS CB HB3 sing N N 189 LYS CG CD sing N N 190 LYS CG HG2 sing N N 191 LYS CG HG3 sing N N 192 LYS CD CE sing N N 193 LYS CD HD2 sing N N 194 LYS CD HD3 sing N N 195 LYS CE NZ sing N N 196 LYS CE HE2 sing N N 197 LYS CE HE3 sing N N 198 LYS NZ HZ1 sing N N 199 LYS NZ HZ2 sing N N 200 LYS NZ HZ3 sing N N 201 LYS OXT HXT sing N N 202 MET N CA sing N N 203 MET N H sing N N 204 MET N H2 sing N N 205 MET CA C sing N N 206 MET CA CB sing N N 207 MET CA HA sing N N 208 MET C O doub N N 209 MET C OXT sing N N 210 MET CB CG sing N N 211 MET CB HB2 sing N N 212 MET CB HB3 sing N N 213 MET CG SD sing N N 214 MET CG HG2 sing N N 215 MET CG HG3 sing N N 216 MET SD CE sing N N 217 MET CE HE1 sing N N 218 MET CE HE2 sing N N 219 MET CE HE3 sing N N 220 MET OXT HXT sing N N 221 PHE N CA sing N N 222 PHE N H sing N N 223 PHE N H2 sing N N 224 PHE CA C sing N N 225 PHE CA CB sing N N 226 PHE CA HA sing N N 227 PHE C O doub N N 228 PHE C OXT sing N N 229 PHE CB CG sing N N 230 PHE CB HB2 sing N N 231 PHE CB HB3 sing N N 232 PHE CG CD1 doub Y N 233 PHE CG CD2 sing Y N 234 PHE CD1 CE1 sing Y N 235 PHE CD1 HD1 sing N N 236 PHE CD2 CE2 doub Y N 237 PHE CD2 HD2 sing N N 238 PHE CE1 CZ doub Y N 239 PHE CE1 HE1 sing N N 240 PHE CE2 CZ sing Y N 241 PHE CE2 HE2 sing N N 242 PHE CZ HZ sing N N 243 PHE OXT HXT sing N N 244 PRO N CA sing N N 245 PRO N CD sing N N 246 PRO N H sing N N 247 PRO CA C sing N N 248 PRO CA CB sing N N 249 PRO CA HA sing N N 250 PRO C O doub N N 251 PRO C OXT sing N N 252 PRO CB CG sing N N 253 PRO CB HB2 sing N N 254 PRO CB HB3 sing N N 255 PRO CG CD sing N N 256 PRO CG HG2 sing N N 257 PRO CG HG3 sing N N 258 PRO CD HD2 sing N N 259 PRO CD HD3 sing N N 260 PRO OXT HXT sing N N 261 SER N CA sing N N 262 SER N H sing N N 263 SER N H2 sing N N 264 SER CA C sing N N 265 SER CA CB sing N N 266 SER CA HA sing N N 267 SER C O doub N N 268 SER C OXT sing N N 269 SER CB OG sing N N 270 SER CB HB2 sing N N 271 SER CB HB3 sing N N 272 SER OG HG sing N N 273 SER OXT HXT sing N N 274 THR N CA sing N N 275 THR N H sing N N 276 THR N H2 sing N N 277 THR CA C sing N N 278 THR CA CB sing N N 279 THR CA HA sing N N 280 THR C O doub N N 281 THR C OXT sing N N 282 THR CB OG1 sing N N 283 THR CB CG2 sing N N 284 THR CB HB sing N N 285 THR OG1 HG1 sing N N 286 THR CG2 HG21 sing N N 287 THR CG2 HG22 sing N N 288 THR CG2 HG23 sing N N 289 THR OXT HXT sing N N 290 TRP N CA sing N N 291 TRP N H sing N N 292 TRP N H2 sing N N 293 TRP CA C sing N N 294 TRP CA CB sing N N 295 TRP CA HA sing N N 296 TRP C O doub N N 297 TRP C OXT sing N N 298 TRP CB CG sing N N 299 TRP CB HB2 sing N N 300 TRP CB HB3 sing N N 301 TRP CG CD1 doub Y N 302 TRP CG CD2 sing Y N 303 TRP CD1 NE1 sing Y N 304 TRP CD1 HD1 sing N N 305 TRP CD2 CE2 doub Y N 306 TRP CD2 CE3 sing Y N 307 TRP NE1 CE2 sing Y N 308 TRP NE1 HE1 sing N N 309 TRP CE2 CZ2 sing Y N 310 TRP CE3 CZ3 doub Y N 311 TRP CE3 HE3 sing N N 312 TRP CZ2 CH2 doub Y N 313 TRP CZ2 HZ2 sing N N 314 TRP CZ3 CH2 sing Y N 315 TRP CZ3 HZ3 sing N N 316 TRP CH2 HH2 sing N N 317 TRP OXT HXT sing N N 318 TYR N CA sing N N 319 TYR N H sing N N 320 TYR N H2 sing N N 321 TYR CA C sing N N 322 TYR CA CB sing N N 323 TYR CA HA sing N N 324 TYR C O doub N N 325 TYR C OXT sing N N 326 TYR CB CG sing N N 327 TYR CB HB2 sing N N 328 TYR CB HB3 sing N N 329 TYR CG CD1 doub Y N 330 TYR CG CD2 sing Y N 331 TYR CD1 CE1 sing Y N 332 TYR CD1 HD1 sing N N 333 TYR CD2 CE2 doub Y N 334 TYR CD2 HD2 sing N N 335 TYR CE1 CZ doub Y N 336 TYR CE1 HE1 sing N N 337 TYR CE2 CZ sing Y N 338 TYR CE2 HE2 sing N N 339 TYR CZ OH sing N N 340 TYR OH HH sing N N 341 TYR OXT HXT sing N N 342 VAL N CA sing N N 343 VAL N H sing N N 344 VAL N H2 sing N N 345 VAL CA C sing N N 346 VAL CA CB sing N N 347 VAL CA HA sing N N 348 VAL C O doub N N 349 VAL C OXT sing N N 350 VAL CB CG1 sing N N 351 VAL CB CG2 sing N N 352 VAL CB HB sing N N 353 VAL CG1 HG11 sing N N 354 VAL CG1 HG12 sing N N 355 VAL CG1 HG13 sing N N 356 VAL CG2 HG21 sing N N 357 VAL CG2 HG22 sing N N 358 VAL CG2 HG23 sing N N 359 VAL OXT HXT sing N N 360 # _em_image_processing.id 1 _em_image_processing.image_recording_id 1 _em_image_processing.details ? # _em_image_recording.id 1 _em_image_recording.avg_electron_dose_per_image 25 _em_image_recording.film_or_detector_model 'TVIPS TEMCAM-F816 (8k x 8k)' _em_image_recording.imaging_id 1 _em_image_recording.detector_mode ? _em_image_recording.average_exposure_time ? _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged ? _em_image_recording.num_real_images ? _em_image_recording.details ? # loop_ _em_software.id _em_software.name _em_software.version _em_software.category _em_software.details 1 EMTEGRATOR ? 'MODEL FITTING' ? 2 iMODFIT ? 'MODEL FITTING' ? 3 VOLTRAC ? 'MODEL FITTING' ? # _em_specimen.experiment_id 1 _em_specimen.id 1 _em_specimen.concentration ? _em_specimen.vitrification_applied YES _em_specimen.staining_applied NO _em_specimen.embedding_applied NO _em_specimen.shadowing_applied NO _em_specimen.details ? # _atom_sites.entry_id 3J47 _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_