data_3J6M # _entry.id 3J6M # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.296 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 3J6M RCSB RCSB160316 WWPDB D_1000160316 # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.content_type _pdbx_database_related.details EMDB EMD-5927 'associated EM volume' . EMDB EMD-5928 'other EM volume' . PDB 3J6L unspecified . PDB 3J6N unspecified . PDB 3J6O unspecified . # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3J6M _pdbx_database_status.recvd_initial_deposition_date 2014-03-19 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Organtini, L.J.' 1 'Makhov, A.M.' 2 'Conway, J.F.' 3 'Hafenstein, S.' 4 'Carson, S.D.' 5 # _citation.id primary _citation.title 'Kinetic and structural analysis of coxsackievirus b3 receptor interactions and formation of the a-particle.' _citation.journal_abbrev J.Virol. _citation.journal_volume 88 _citation.page_first 5755 _citation.page_last 5765 _citation.year 2014 _citation.journal_id_ASTM JOVIAM _citation.country US _citation.journal_id_ISSN 0022-538X _citation.journal_id_CSD 0825 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 24623425 _citation.pdbx_database_id_DOI 10.1128/JVI.00299-14 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Organtini, L.J.' 1 primary 'Makhov, A.M.' 2 primary 'Conway, J.F.' 3 primary 'Hafenstein, S.' 4 primary 'Carson, S.D.' 5 # _cell.entry_id 3J6M _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3J6M _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Coxsackievirus and adenovirus receptor' 13640.500 1 ? ? 'UNP residues 21-144' ? 2 water nat water 18.015 30 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'CAR, hCAR, CVB3-binding protein, Coxsackievirus B-adenovirus receptor, HCVADR' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GITTPEEMIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPADNQKVDQVIILYSGDKIYDDYYPDLKGRVHFTSNDLKS GDASINVTNLQLSDIGTYQCKVKKAPGVANKKIHLVVLVKPSGA ; _entity_poly.pdbx_seq_one_letter_code_can ;GITTPEEMIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPADNQKVDQVIILYSGDKIYDDYYPDLKGRVHFTSNDLKS GDASINVTNLQLSDIGTYQCKVKKAPGVANKKIHLVVLVKPSGA ; _entity_poly.pdbx_strand_id B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 ILE n 1 3 THR n 1 4 THR n 1 5 PRO n 1 6 GLU n 1 7 GLU n 1 8 MET n 1 9 ILE n 1 10 GLU n 1 11 LYS n 1 12 ALA n 1 13 LYS n 1 14 GLY n 1 15 GLU n 1 16 THR n 1 17 ALA n 1 18 TYR n 1 19 LEU n 1 20 PRO n 1 21 CYS n 1 22 LYS n 1 23 PHE n 1 24 THR n 1 25 LEU n 1 26 SER n 1 27 PRO n 1 28 GLU n 1 29 ASP n 1 30 GLN n 1 31 GLY n 1 32 PRO n 1 33 LEU n 1 34 ASP n 1 35 ILE n 1 36 GLU n 1 37 TRP n 1 38 LEU n 1 39 ILE n 1 40 SER n 1 41 PRO n 1 42 ALA n 1 43 ASP n 1 44 ASN n 1 45 GLN n 1 46 LYS n 1 47 VAL n 1 48 ASP n 1 49 GLN n 1 50 VAL n 1 51 ILE n 1 52 ILE n 1 53 LEU n 1 54 TYR n 1 55 SER n 1 56 GLY n 1 57 ASP n 1 58 LYS n 1 59 ILE n 1 60 TYR n 1 61 ASP n 1 62 ASP n 1 63 TYR n 1 64 TYR n 1 65 PRO n 1 66 ASP n 1 67 LEU n 1 68 LYS n 1 69 GLY n 1 70 ARG n 1 71 VAL n 1 72 HIS n 1 73 PHE n 1 74 THR n 1 75 SER n 1 76 ASN n 1 77 ASP n 1 78 LEU n 1 79 LYS n 1 80 SER n 1 81 GLY n 1 82 ASP n 1 83 ALA n 1 84 SER n 1 85 ILE n 1 86 ASN n 1 87 VAL n 1 88 THR n 1 89 ASN n 1 90 LEU n 1 91 GLN n 1 92 LEU n 1 93 SER n 1 94 ASP n 1 95 ILE n 1 96 GLY n 1 97 THR n 1 98 TYR n 1 99 GLN n 1 100 CYS n 1 101 LYS n 1 102 VAL n 1 103 LYS n 1 104 LYS n 1 105 ALA n 1 106 PRO n 1 107 GLY n 1 108 VAL n 1 109 ALA n 1 110 ASN n 1 111 LYS n 1 112 LYS n 1 113 ILE n 1 114 HIS n 1 115 LEU n 1 116 VAL n 1 117 VAL n 1 118 LEU n 1 119 VAL n 1 120 LYS n 1 121 PRO n 1 122 SER n 1 123 GLY n 1 124 ALA n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'CXADR, CAR' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code CXAR_HUMAN _struct_ref.pdbx_db_accession P78310 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;SITTPEEMIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPADNQKVDQVIILYSGDKIYDDYYPDLKGRVHFTSNDLKS GDASINVTNLQLSDIGTYQCKVKKAPGVANKKIHLVVLVKPSGA ; _struct_ref.pdbx_align_begin 21 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3J6M _struct_ref_seq.pdbx_strand_id B _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 124 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P78310 _struct_ref_seq.db_align_beg 21 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 144 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 23 _struct_ref_seq.pdbx_auth_seq_align_end 146 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 3J6M _struct_ref_seq_dif.mon_id GLY _struct_ref_seq_dif.pdbx_pdb_strand_id B _struct_ref_seq_dif.seq_num 1 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code P78310 _struct_ref_seq_dif.db_mon_id SER _struct_ref_seq_dif.pdbx_seq_db_seq_num 21 _struct_ref_seq_dif.details CONFLICT _struct_ref_seq_dif.pdbx_auth_seq_num 23 _struct_ref_seq_dif.pdbx_ordinal 1 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3J6M _exptl.method 'ELECTRON MICROSCOPY' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews ? _exptl_crystal.density_percent_sol ? _exptl_crystal.description ? # _diffrn.id 1 _diffrn.ambient_temp ? _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _refine_hist.pdbx_refine_id 'ELECTRON MICROSCOPY' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 959 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 30 _refine_hist.number_atoms_total 989 _refine_hist.d_res_high . _refine_hist.d_res_low . # _struct.entry_id 3J6M _struct.title 'Kinetic and Structural Analysis of Coxsackievirus B3 Receptor Interactions and Formation of the A-particle' _struct.pdbx_descriptor 'Coxsackievirus and adenovirus receptor' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3J6M _struct_keywords.pdbx_keywords 'CELL ADHESION' _struct_keywords.text 'Coxsackievirus B3, CVB3, CAR, CELL ADHESION' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 TYR A 64 ? LYS A 68 ? TYR B 86 LYS B 90 5 ? 5 HELX_P HELX_P2 2 ASP A 77 ? GLY A 81 ? ASP B 99 GLY B 103 5 ? 5 HELX_P HELX_P3 3 GLN A 91 ? ASP A 94 ? GLN B 113 ASP B 116 5 ? 4 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_conn.id disulf1 _struct_conn.conn_type_id disulf _struct_conn.pdbx_leaving_atom_flag ? _struct_conn.pdbx_PDB_id ? _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 21 _struct_conn.ptnr1_label_atom_id SG _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 100 _struct_conn.ptnr2_label_atom_id SG _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.ptnr1_auth_asym_id B _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 43 _struct_conn.ptnr2_auth_asym_id B _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 122 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.details ? _struct_conn.pdbx_dist_value 2.029 _struct_conn.pdbx_value_order ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id ALA _struct_mon_prot_cis.label_seq_id 105 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id ALA _struct_mon_prot_cis.auth_seq_id 127 _struct_mon_prot_cis.auth_asym_id B _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 106 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 128 _struct_mon_prot_cis.pdbx_auth_asym_id_2 B _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle 0.28 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 6 ? B ? 3 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 GLU A 7 ? ALA A 12 ? GLU B 29 ALA B 34 A 2 GLY A 107 ? LEU A 118 ? GLY B 129 LEU B 140 A 3 GLY A 96 ? LYS A 104 ? GLY B 118 LYS B 126 A 4 LEU A 33 ? PRO A 41 ? LEU B 55 PRO B 63 A 5 GLN A 49 ? SER A 55 ? GLN B 71 SER B 77 A 6 LYS A 58 ? TYR A 60 ? LYS B 80 TYR B 82 B 1 ALA A 17 ? LEU A 19 ? ALA B 39 LEU B 41 B 2 ILE A 85 ? VAL A 87 ? ILE B 107 VAL B 109 B 3 VAL A 71 ? PHE A 73 ? VAL B 93 PHE B 95 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N ILE A 9 ? N ILE B 31 O VAL A 116 ? O VAL B 138 A 2 3 O ILE A 113 ? O ILE B 135 N TYR A 98 ? N TYR B 120 A 3 4 O LYS A 101 ? O LYS B 123 N GLU A 36 ? N GLU B 58 A 4 5 N TRP A 37 ? N TRP B 59 O ILE A 51 ? O ILE B 73 A 5 6 N LEU A 53 ? N LEU B 75 O TYR A 60 ? O TYR B 82 B 1 2 N LEU A 19 ? N LEU B 41 O ILE A 85 ? O ILE B 107 B 2 3 O ASN A 86 ? O ASN B 108 N HIS A 72 ? N HIS B 94 # _database_PDB_matrix.entry_id 3J6M _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3J6M _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 23 23 GLY GLY B . n A 1 2 ILE 2 24 24 ILE ILE B . n A 1 3 THR 3 25 25 THR THR B . n A 1 4 THR 4 26 26 THR THR B . n A 1 5 PRO 5 27 27 PRO PRO B . n A 1 6 GLU 6 28 28 GLU GLU B . n A 1 7 GLU 7 29 29 GLU GLU B . n A 1 8 MET 8 30 30 MET MET B . n A 1 9 ILE 9 31 31 ILE ILE B . n A 1 10 GLU 10 32 32 GLU GLU B . n A 1 11 LYS 11 33 33 LYS LYS B . n A 1 12 ALA 12 34 34 ALA ALA B . n A 1 13 LYS 13 35 35 LYS LYS B . n A 1 14 GLY 14 36 36 GLY GLY B . n A 1 15 GLU 15 37 37 GLU GLU B . n A 1 16 THR 16 38 38 THR THR B . n A 1 17 ALA 17 39 39 ALA ALA B . n A 1 18 TYR 18 40 40 TYR TYR B . n A 1 19 LEU 19 41 41 LEU LEU B . n A 1 20 PRO 20 42 42 PRO PRO B . n A 1 21 CYS 21 43 43 CYS CYS B . n A 1 22 LYS 22 44 44 LYS LYS B . n A 1 23 PHE 23 45 45 PHE PHE B . n A 1 24 THR 24 46 46 THR THR B . n A 1 25 LEU 25 47 47 LEU LEU B . n A 1 26 SER 26 48 48 SER SER B . n A 1 27 PRO 27 49 49 PRO PRO B . n A 1 28 GLU 28 50 50 GLU GLU B . n A 1 29 ASP 29 51 51 ASP ASP B . n A 1 30 GLN 30 52 52 GLN GLN B . n A 1 31 GLY 31 53 53 GLY GLY B . n A 1 32 PRO 32 54 54 PRO PRO B . n A 1 33 LEU 33 55 55 LEU LEU B . n A 1 34 ASP 34 56 56 ASP ASP B . n A 1 35 ILE 35 57 57 ILE ILE B . n A 1 36 GLU 36 58 58 GLU GLU B . n A 1 37 TRP 37 59 59 TRP TRP B . n A 1 38 LEU 38 60 60 LEU LEU B . n A 1 39 ILE 39 61 61 ILE ILE B . n A 1 40 SER 40 62 62 SER SER B . n A 1 41 PRO 41 63 63 PRO PRO B . n A 1 42 ALA 42 64 64 ALA ALA B . n A 1 43 ASP 43 65 65 ASP ASP B . n A 1 44 ASN 44 66 66 ASN ASN B . n A 1 45 GLN 45 67 67 GLN GLN B . n A 1 46 LYS 46 68 68 LYS LYS B . n A 1 47 VAL 47 69 69 VAL VAL B . n A 1 48 ASP 48 70 70 ASP ASP B . n A 1 49 GLN 49 71 71 GLN GLN B . n A 1 50 VAL 50 72 72 VAL VAL B . n A 1 51 ILE 51 73 73 ILE ILE B . n A 1 52 ILE 52 74 74 ILE ILE B . n A 1 53 LEU 53 75 75 LEU LEU B . n A 1 54 TYR 54 76 76 TYR TYR B . n A 1 55 SER 55 77 77 SER SER B . n A 1 56 GLY 56 78 78 GLY GLY B . n A 1 57 ASP 57 79 79 ASP ASP B . n A 1 58 LYS 58 80 80 LYS LYS B . n A 1 59 ILE 59 81 81 ILE ILE B . n A 1 60 TYR 60 82 82 TYR TYR B . n A 1 61 ASP 61 83 83 ASP ASP B . n A 1 62 ASP 62 84 84 ASP ASP B . n A 1 63 TYR 63 85 85 TYR TYR B . n A 1 64 TYR 64 86 86 TYR TYR B . n A 1 65 PRO 65 87 87 PRO PRO B . n A 1 66 ASP 66 88 88 ASP ASP B . n A 1 67 LEU 67 89 89 LEU LEU B . n A 1 68 LYS 68 90 90 LYS LYS B . n A 1 69 GLY 69 91 91 GLY GLY B . n A 1 70 ARG 70 92 92 ARG ARG B . n A 1 71 VAL 71 93 93 VAL VAL B . n A 1 72 HIS 72 94 94 HIS HIS B . n A 1 73 PHE 73 95 95 PHE PHE B . n A 1 74 THR 74 96 96 THR THR B . n A 1 75 SER 75 97 97 SER SER B . n A 1 76 ASN 76 98 98 ASN ASN B . n A 1 77 ASP 77 99 99 ASP ASP B . n A 1 78 LEU 78 100 100 LEU LEU B . n A 1 79 LYS 79 101 101 LYS LYS B . n A 1 80 SER 80 102 102 SER SER B . n A 1 81 GLY 81 103 103 GLY GLY B . n A 1 82 ASP 82 104 104 ASP ASP B . n A 1 83 ALA 83 105 105 ALA ALA B . n A 1 84 SER 84 106 106 SER SER B . n A 1 85 ILE 85 107 107 ILE ILE B . n A 1 86 ASN 86 108 108 ASN ASN B . n A 1 87 VAL 87 109 109 VAL VAL B . n A 1 88 THR 88 110 110 THR THR B . n A 1 89 ASN 89 111 111 ASN ASN B . n A 1 90 LEU 90 112 112 LEU LEU B . n A 1 91 GLN 91 113 113 GLN GLN B . n A 1 92 LEU 92 114 114 LEU LEU B . n A 1 93 SER 93 115 115 SER SER B . n A 1 94 ASP 94 116 116 ASP ASP B . n A 1 95 ILE 95 117 117 ILE ILE B . n A 1 96 GLY 96 118 118 GLY GLY B . n A 1 97 THR 97 119 119 THR THR B . n A 1 98 TYR 98 120 120 TYR TYR B . n A 1 99 GLN 99 121 121 GLN GLN B . n A 1 100 CYS 100 122 122 CYS CYS B . n A 1 101 LYS 101 123 123 LYS LYS B . n A 1 102 VAL 102 124 124 VAL VAL B . n A 1 103 LYS 103 125 125 LYS LYS B . n A 1 104 LYS 104 126 126 LYS LYS B . n A 1 105 ALA 105 127 127 ALA ALA B . n A 1 106 PRO 106 128 128 PRO PRO B . n A 1 107 GLY 107 129 129 GLY GLY B . n A 1 108 VAL 108 130 130 VAL VAL B . n A 1 109 ALA 109 131 131 ALA ALA B . n A 1 110 ASN 110 132 132 ASN ASN B . n A 1 111 LYS 111 133 133 LYS LYS B . n A 1 112 LYS 112 134 134 LYS LYS B . n A 1 113 ILE 113 135 135 ILE ILE B . n A 1 114 HIS 114 136 136 HIS HIS B . n A 1 115 LEU 115 137 137 LEU LEU B . n A 1 116 VAL 116 138 138 VAL VAL B . n A 1 117 VAL 117 139 139 VAL VAL B . n A 1 118 LEU 118 140 140 LEU LEU B . n A 1 119 VAL 119 141 141 VAL VAL B . n A 1 120 LYS 120 142 142 LYS LYS B . n A 1 121 PRO 121 143 143 PRO PRO B . n A 1 122 SER 122 144 144 SER SER B . n A 1 123 GLY 123 145 145 GLY GLY B . n A 1 124 ALA 124 146 146 ALA ALA B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HOH 1 201 147 HOH HOH B . B 2 HOH 2 202 148 HOH HOH B . B 2 HOH 3 203 149 HOH HOH B . B 2 HOH 4 204 150 HOH HOH B . B 2 HOH 5 205 151 HOH HOH B . B 2 HOH 6 206 152 HOH HOH B . B 2 HOH 7 207 153 HOH HOH B . B 2 HOH 8 208 154 HOH HOH B . B 2 HOH 9 209 155 HOH HOH B . B 2 HOH 10 210 156 HOH HOH B . B 2 HOH 11 211 157 HOH HOH B . B 2 HOH 12 212 158 HOH HOH B . B 2 HOH 13 213 159 HOH HOH B . B 2 HOH 14 214 160 HOH HOH B . B 2 HOH 15 215 161 HOH HOH B . B 2 HOH 16 216 162 HOH HOH B . B 2 HOH 17 217 163 HOH HOH B . B 2 HOH 18 218 164 HOH HOH B . B 2 HOH 19 219 165 HOH HOH B . B 2 HOH 20 220 166 HOH HOH B . B 2 HOH 21 221 167 HOH HOH B . B 2 HOH 22 222 168 HOH HOH B . B 2 HOH 23 223 169 HOH HOH B . B 2 HOH 24 224 170 HOH HOH B . B 2 HOH 25 225 171 HOH HOH B . B 2 HOH 26 226 172 HOH HOH B . B 2 HOH 27 227 173 HOH HOH B . B 2 HOH 28 228 174 HOH HOH B . B 2 HOH 29 229 175 HOH HOH B . B 2 HOH 30 230 176 HOH HOH B . # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 'complete icosahedral assembly' ? 60-MERIC 60 2 'icosahedral asymmetric unit' ? monomeric 1 3 'icosahedral pentamer' ? pentameric 5 4 'icosahedral 23 hexamer' ? hexameric 6 5 'icosahedral asymmetric unit, std point frame' ? monomeric 1 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 '(1-60)' A,B 2 1 A,B 3 '(1-5)' A,B 4 '(1,2,6,10,23,24)' A,B 5 P A,B # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] P 'transform to point frame' ? ? 0.00000000 -1.00000000 0.00000000 0.00000 1.00000000 0.00000000 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 0.00000 1 'point symmetry operation' ? ? 1.00000000 0.00000000 0.00000000 0.00000 0.00000000 1.00000000 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 0.00000 2 'point symmetry operation' ? ? 0.50000000 -0.80901699 0.30901699 0.00000 0.80901699 0.30901699 -0.50000000 0.00000 0.30901699 0.50000000 0.80901699 0.00000 3 'point symmetry operation' ? ? -0.30901699 -0.50000000 0.80901699 0.00000 0.50000000 -0.80901699 -0.30901699 0.00000 0.80901699 0.30901699 0.50000000 0.00000 4 'point symmetry operation' ? ? -0.30901699 0.50000000 0.80901699 0.00000 -0.50000000 -0.80901699 0.30901699 0.00000 0.80901699 -0.30901699 0.50000000 0.00000 5 'point symmetry operation' ? ? 0.50000000 0.80901699 0.30901699 0.00000 -0.80901699 0.30901699 0.50000000 0.00000 0.30901699 -0.50000000 0.80901699 0.00000 6 'point symmetry operation' ? ? -1.00000000 0.00000000 0.00000000 0.00000 0.00000000 -1.00000000 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 0.00000 7 'point symmetry operation' ? ? -0.50000000 0.80901699 -0.30901699 0.00000 -0.80901699 -0.30901699 0.50000000 0.00000 0.30901699 0.50000000 0.80901699 0.00000 8 'point symmetry operation' ? ? 0.30901699 0.50000000 -0.80901699 0.00000 -0.50000000 0.80901699 0.30901699 0.00000 0.80901699 0.30901699 0.50000000 0.00000 9 'point symmetry operation' ? ? 0.30901699 -0.50000000 -0.80901699 0.00000 0.50000000 0.80901699 -0.30901699 0.00000 0.80901699 -0.30901699 0.50000000 0.00000 10 'point symmetry operation' ? ? -0.50000000 -0.80901699 -0.30901699 0.00000 0.80901699 -0.30901699 -0.50000000 0.00000 0.30901699 -0.50000000 0.80901699 0.00000 11 'point symmetry operation' ? ? 1.00000000 0.00000000 0.00000000 0.00000 0.00000000 -1.00000000 0.00000000 0.00000 0.00000000 0.00000000 -1.00000000 0.00000 12 'point symmetry operation' ? ? 0.50000000 -0.80901699 0.30901699 0.00000 -0.80901699 -0.30901699 0.50000000 0.00000 -0.30901699 -0.50000000 -0.80901699 0.00000 13 'point symmetry operation' ? ? -0.30901699 -0.50000000 0.80901699 0.00000 -0.50000000 0.80901699 0.30901699 0.00000 -0.80901699 -0.30901699 -0.50000000 0.00000 14 'point symmetry operation' ? ? -0.30901699 0.50000000 0.80901699 0.00000 0.50000000 0.80901699 -0.30901699 0.00000 -0.80901699 0.30901699 -0.50000000 0.00000 15 'point symmetry operation' ? ? 0.50000000 0.80901699 0.30901699 0.00000 0.80901699 -0.30901699 -0.50000000 0.00000 -0.30901699 0.50000000 -0.80901699 0.00000 16 'point symmetry operation' ? ? -1.00000000 0.00000000 0.00000000 0.00000 0.00000000 1.00000000 0.00000000 0.00000 0.00000000 0.00000000 -1.00000000 0.00000 17 'point symmetry operation' ? ? -0.50000000 0.80901699 -0.30901699 0.00000 0.80901699 0.30901699 -0.50000000 0.00000 -0.30901699 -0.50000000 -0.80901699 0.00000 18 'point symmetry operation' ? ? 0.30901699 0.50000000 -0.80901699 0.00000 0.50000000 -0.80901699 -0.30901699 0.00000 -0.80901699 -0.30901699 -0.50000000 0.00000 19 'point symmetry operation' ? ? 0.30901699 -0.50000000 -0.80901699 0.00000 -0.50000000 -0.80901699 0.30901699 0.00000 -0.80901699 0.30901699 -0.50000000 0.00000 20 'point symmetry operation' ? ? -0.50000000 -0.80901699 -0.30901699 0.00000 -0.80901699 0.30901699 0.50000000 0.00000 -0.30901699 0.50000000 -0.80901699 0.00000 21 'point symmetry operation' ? ? 0.00000000 -1.00000000 0.00000000 0.00000 0.00000000 0.00000000 -1.00000000 0.00000 1.00000000 0.00000000 0.00000000 0.00000 22 'point symmetry operation' ? ? -0.80901699 -0.30901699 0.50000000 0.00000 -0.30901699 -0.50000000 -0.80901699 0.00000 0.50000000 -0.80901699 0.30901699 0.00000 23 'point symmetry operation' ? ? -0.50000000 0.80901699 0.30901699 0.00000 -0.80901699 -0.30901699 -0.50000000 0.00000 -0.30901699 -0.50000000 0.80901699 0.00000 24 'point symmetry operation' ? ? 0.50000000 0.80901699 -0.30901699 0.00000 -0.80901699 0.30901699 -0.50000000 0.00000 -0.30901699 0.50000000 0.80901699 0.00000 25 'point symmetry operation' ? ? 0.80901699 -0.30901699 -0.50000000 0.00000 -0.30901699 0.50000000 -0.80901699 0.00000 0.50000000 0.80901699 0.30901699 0.00000 26 'point symmetry operation' ? ? 0.00000000 1.00000000 0.00000000 0.00000 0.00000000 0.00000000 -1.00000000 0.00000 -1.00000000 0.00000000 0.00000000 0.00000 27 'point symmetry operation' ? ? 0.80901699 0.30901699 -0.50000000 0.00000 -0.30901699 -0.50000000 -0.80901699 0.00000 -0.50000000 0.80901699 -0.30901699 0.00000 28 'point symmetry operation' ? ? 0.50000000 -0.80901699 -0.30901699 0.00000 -0.80901699 -0.30901699 -0.50000000 0.00000 0.30901699 0.50000000 -0.80901699 0.00000 29 'point symmetry operation' ? ? -0.50000000 -0.80901699 0.30901699 0.00000 -0.80901699 0.30901699 -0.50000000 0.00000 0.30901699 -0.50000000 -0.80901699 0.00000 30 'point symmetry operation' ? ? -0.80901699 0.30901699 0.50000000 0.00000 -0.30901699 0.50000000 -0.80901699 0.00000 -0.50000000 -0.80901699 -0.30901699 0.00000 31 'point symmetry operation' ? ? 0.00000000 1.00000000 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 0.00000 1.00000000 0.00000000 0.00000000 0.00000 32 'point symmetry operation' ? ? 0.80901699 0.30901699 -0.50000000 0.00000 0.30901699 0.50000000 0.80901699 0.00000 0.50000000 -0.80901699 0.30901699 0.00000 33 'point symmetry operation' ? ? 0.50000000 -0.80901699 -0.30901699 0.00000 0.80901699 0.30901699 0.50000000 0.00000 -0.30901699 -0.50000000 0.80901699 0.00000 34 'point symmetry operation' ? ? -0.50000000 -0.80901699 0.30901699 0.00000 0.80901699 -0.30901699 0.50000000 0.00000 -0.30901699 0.50000000 0.80901699 0.00000 35 'point symmetry operation' ? ? -0.80901699 0.30901699 0.50000000 0.00000 0.30901699 -0.50000000 0.80901699 0.00000 0.50000000 0.80901699 0.30901699 0.00000 36 'point symmetry operation' ? ? 0.00000000 -1.00000000 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 0.00000 -1.00000000 0.00000000 0.00000000 0.00000 37 'point symmetry operation' ? ? -0.80901699 -0.30901699 0.50000000 0.00000 0.30901699 0.50000000 0.80901699 0.00000 -0.50000000 0.80901699 -0.30901699 0.00000 38 'point symmetry operation' ? ? -0.50000000 0.80901699 0.30901699 0.00000 0.80901699 0.30901699 0.50000000 0.00000 0.30901699 0.50000000 -0.80901699 0.00000 39 'point symmetry operation' ? ? 0.50000000 0.80901699 -0.30901699 0.00000 0.80901699 -0.30901699 0.50000000 0.00000 0.30901699 -0.50000000 -0.80901699 0.00000 40 'point symmetry operation' ? ? 0.80901699 -0.30901699 -0.50000000 0.00000 0.30901699 -0.50000000 0.80901699 0.00000 -0.50000000 -0.80901699 -0.30901699 0.00000 41 'point symmetry operation' ? ? 0.00000000 0.00000000 1.00000000 0.00000 -1.00000000 0.00000000 0.00000000 0.00000 0.00000000 -1.00000000 0.00000000 0.00000 42 'point symmetry operation' ? ? 0.30901699 0.50000000 0.80901699 0.00000 -0.50000000 0.80901699 -0.30901699 0.00000 -0.80901699 -0.30901699 0.50000000 0.00000 43 'point symmetry operation' ? ? 0.80901699 0.30901699 0.50000000 0.00000 0.30901699 0.50000000 -0.80901699 0.00000 -0.50000000 0.80901699 0.30901699 0.00000 44 'point symmetry operation' ? ? 0.80901699 -0.30901699 0.50000000 0.00000 0.30901699 -0.50000000 -0.80901699 0.00000 0.50000000 0.80901699 -0.30901699 0.00000 45 'point symmetry operation' ? ? 0.30901699 -0.50000000 0.80901699 0.00000 -0.50000000 -0.80901699 -0.30901699 0.00000 0.80901699 -0.30901699 -0.50000000 0.00000 46 'point symmetry operation' ? ? 0.00000000 0.00000000 1.00000000 0.00000 1.00000000 0.00000000 0.00000000 0.00000 0.00000000 1.00000000 0.00000000 0.00000 47 'point symmetry operation' ? ? 0.30901699 0.50000000 0.80901699 0.00000 0.50000000 -0.80901699 0.30901699 0.00000 0.80901699 0.30901699 -0.50000000 0.00000 48 'point symmetry operation' ? ? 0.80901699 0.30901699 0.50000000 0.00000 -0.30901699 -0.50000000 0.80901699 0.00000 0.50000000 -0.80901699 -0.30901699 0.00000 49 'point symmetry operation' ? ? 0.80901699 -0.30901699 0.50000000 0.00000 -0.30901699 0.50000000 0.80901699 0.00000 -0.50000000 -0.80901699 0.30901699 0.00000 50 'point symmetry operation' ? ? 0.30901699 -0.50000000 0.80901699 0.00000 0.50000000 0.80901699 0.30901699 0.00000 -0.80901699 0.30901699 0.50000000 0.00000 51 'point symmetry operation' ? ? 0.00000000 0.00000000 -1.00000000 0.00000 -1.00000000 0.00000000 0.00000000 0.00000 0.00000000 1.00000000 0.00000000 0.00000 52 'point symmetry operation' ? ? -0.30901699 -0.50000000 -0.80901699 0.00000 -0.50000000 0.80901699 -0.30901699 0.00000 0.80901699 0.30901699 -0.50000000 0.00000 53 'point symmetry operation' ? ? -0.80901699 -0.30901699 -0.50000000 0.00000 0.30901699 0.50000000 -0.80901699 0.00000 0.50000000 -0.80901699 -0.30901699 0.00000 54 'point symmetry operation' ? ? -0.80901699 0.30901699 -0.50000000 0.00000 0.30901699 -0.50000000 -0.80901699 0.00000 -0.50000000 -0.80901699 0.30901699 0.00000 55 'point symmetry operation' ? ? -0.30901699 0.50000000 -0.80901699 0.00000 -0.50000000 -0.80901699 -0.30901699 0.00000 -0.80901699 0.30901699 0.50000000 0.00000 56 'point symmetry operation' ? ? 0.00000000 0.00000000 -1.00000000 0.00000 1.00000000 0.00000000 0.00000000 0.00000 0.00000000 -1.00000000 0.00000000 0.00000 57 'point symmetry operation' ? ? -0.30901699 -0.50000000 -0.80901699 0.00000 0.50000000 -0.80901699 0.30901699 0.00000 -0.80901699 -0.30901699 0.50000000 0.00000 58 'point symmetry operation' ? ? -0.80901699 -0.30901699 -0.50000000 0.00000 -0.30901699 -0.50000000 0.80901699 0.00000 -0.50000000 0.80901699 0.30901699 0.00000 59 'point symmetry operation' ? ? -0.80901699 0.30901699 -0.50000000 0.00000 -0.30901699 0.50000000 0.80901699 0.00000 0.50000000 0.80901699 -0.30901699 0.00000 60 'point symmetry operation' ? ? -0.30901699 0.50000000 -0.80901699 0.00000 0.50000000 0.80901699 0.30901699 0.00000 0.80901699 -0.30901699 -0.50000000 0.00000 # _pdbx_point_symmetry.entry_id 3J6M _pdbx_point_symmetry.Schoenflies_symbol I # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2014-04-09 2 'Structure model' 1 1 2014-05-07 3 'Structure model' 1 2 2018-07-18 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' # _pdbx_audit_revision_category.ordinal 1 _pdbx_audit_revision_category.revision_ordinal 3 _pdbx_audit_revision_category.data_content_type 'Structure model' _pdbx_audit_revision_category.category em_software # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_em_software.image_processing_id' 2 3 'Structure model' '_em_software.name' # _em_3d_fitting.id 1 _em_3d_fitting.entry_id 3J6M _em_3d_fitting.ref_protocol 'RIGID BODY FIT' _em_3d_fitting.ref_space REAL _em_3d_fitting.overall_b_value ? _em_3d_fitting.target_criteria 'correlation coefficient' _em_3d_fitting.details 'REFINEMENT PROTOCOL--rigid body' _em_3d_fitting.method ? # _em_3d_fitting_list.3d_fitting_id 1 _em_3d_fitting_list.id 1 _em_3d_fitting_list.pdb_entry_id 1KAC _em_3d_fitting_list.pdb_chain_id B _em_3d_fitting_list.details ? # _em_3d_reconstruction.entry_id 3J6M _em_3d_reconstruction.id 1 _em_3d_reconstruction.resolution_method 'FSC 0.5 CUT-OFF' _em_3d_reconstruction.symmetry_type POINT _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.method 'Common Lines' _em_3d_reconstruction.nominal_pixel_size 1.25 _em_3d_reconstruction.actual_pixel_size 1.25 _em_3d_reconstruction.resolution 9.0 _em_3d_reconstruction.magnification_calibration ? _em_3d_reconstruction.details '(Single particle details: Particles were selected using EMAN) (Single particle--Applied symmetry: I)' _em_3d_reconstruction.num_particles 9302 _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.algorithm ? # _em_buffer.id 1 _em_buffer.specimen_id 1 _em_buffer.name '50 mM MES, 100 mM NaCl' _em_buffer.pH 6 _em_buffer.details '50 mM MES, 100 mM NaCl' # loop_ _em_entity_assembly.id _em_entity_assembly.name _em_entity_assembly.type _em_entity_assembly.parent_id _em_entity_assembly.synonym _em_entity_assembly.details _em_entity_assembly.oligomeric_details 1 'Coxsackievirus B3 complexed with CAR' COMPLEX 0 ? 'icosahedral virus' ? 2 'Human coxsackievirus B3' VIRUS 1 ? ? ? 3 'Coxsackievirus and adenovirus receptor' ? 1 ? ? ? # _em_image_scans.entry_id 3J6M _em_image_scans.id 1 _em_image_scans.image_recording_id 1 _em_image_scans.number_digital_images 96 _em_image_scans.citation_id ? _em_image_scans.od_range ? _em_image_scans.quant_bit_size ? _em_image_scans.sampling_size ? _em_image_scans.scanner_model ? _em_image_scans.details ? # _em_imaging.entry_id 3J6M _em_imaging.id 1 _em_imaging.date 2012-08-01 _em_imaging.specimen_id 1 _em_imaging.temperature ? _em_imaging.microscope_model 'FEI TECNAI F20' _em_imaging.nominal_defocus_min 1980 _em_imaging.nominal_defocus_max 3660 _em_imaging.tilt_angle_min 0.0 _em_imaging.tilt_angle_max 0.0 _em_imaging.nominal_cs 2 _em_imaging.mode 'BRIGHT FIELD' _em_imaging.illumination_mode 'SPOT SCAN' _em_imaging.nominal_magnification 50000 _em_imaging.calibrated_magnification 50000 _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.accelerating_voltage 200 _em_imaging.details ? _em_imaging.specimen_holder_type ? _em_imaging.specimen_holder_model 'GATAN LIQUID NITROGEN' _em_imaging.recording_temperature_minimum ? _em_imaging.recording_temperature_maximum ? _em_imaging.detector_distance 0.0 _em_imaging.electron_beam_tilt_params ? _em_imaging.astigmatism CTFFIND3 _em_imaging.citation_id ? # _em_sample_support.id 1 _em_sample_support.specimen_id 1 _em_sample_support.details 'glow-discharged holey carbon Quantifoil electron microscopy grids' _em_sample_support.film_material ? _em_sample_support.grid_material ? _em_sample_support.grid_mesh_size ? _em_sample_support.grid_type ? _em_sample_support.method ? # _em_virus_entity.id 1 _em_virus_entity.virus_host_category VERTEBRATES _em_virus_entity.entity_assembly_id 1 _em_virus_entity.virus_type VIRION _em_virus_entity.virus_isolate STRAIN _em_virus_entity.empty NO _em_virus_entity.enveloped NO _em_virus_entity.details ? # _em_vitrification.entry_id 3J6M _em_vitrification.id 1 _em_vitrification.details 'Plunged into ethane-propane (FEI VITROBOT MARK III)' _em_vitrification.cryogen_name OTHER _em_vitrification.humidity 95 _em_vitrification.temp 95 _em_vitrification.instrument 'FEI VITROBOT MARK III' _em_vitrification.method ? _em_vitrification.time_resolved_state ? _em_vitrification.citation_id ? _em_vitrification.specimen_id 1 # _em_experiment.entry_id 3J6M _em_experiment.id 1 _em_experiment.aggregation_state PARTICLE _em_experiment.entity_assembly_id 1 _em_experiment.reconstruction_method 'SINGLE PARTICLE' # _em_single_particle_entity.entry_id 3J6M _em_single_particle_entity.id 1 _em_single_particle_entity.point_symmetry I _em_single_particle_entity.image_processing_id 1 # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 O _pdbx_validate_close_contact.auth_asym_id_1 B _pdbx_validate_close_contact.auth_comp_id_1 HOH _pdbx_validate_close_contact.auth_seq_id_1 204 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 B _pdbx_validate_close_contact.auth_comp_id_2 HOH _pdbx_validate_close_contact.auth_seq_id_2 229 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 1.81 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 CG B ASP 83 ? ? OD1 B ASP 83 ? ? 3.343 1.249 2.094 0.023 N 2 1 CG B ASP 83 ? ? OD2 B ASP 83 ? ? 2.908 1.249 1.659 0.023 N 3 1 CG B ASP 84 ? ? OD1 B ASP 84 ? ? 3.000 1.249 1.751 0.023 N 4 1 CG B ASP 84 ? ? OD2 B ASP 84 ? ? 2.481 1.249 1.232 0.023 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 OD1 B ASP 83 ? ? CG B ASP 83 ? ? OD2 B ASP 83 ? ? 41.13 123.30 -82.17 1.90 N 2 1 CB B ASP 83 ? ? CG B ASP 83 ? ? OD1 B ASP 83 ? ? 42.01 118.30 -76.30 0.90 N 3 1 CB B ASP 83 ? ? CG B ASP 83 ? ? OD2 B ASP 83 ? ? 57.42 118.30 -60.88 0.90 N 4 1 OD1 B ASP 84 ? ? CG B ASP 84 ? ? OD2 B ASP 84 ? ? 46.95 123.30 -76.35 1.90 N 5 1 CB B ASP 84 ? ? CG B ASP 84 ? ? OD1 B ASP 84 ? ? 52.20 118.30 -66.10 0.90 N 6 1 CB B ASP 84 ? ? CG B ASP 84 ? ? OD2 B ASP 84 ? ? 69.83 118.30 -48.47 0.90 N 7 1 N B GLY 145 ? ? CA B GLY 145 ? ? C B GLY 145 ? ? 90.95 113.10 -22.15 2.50 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 CYS B 43 ? ? -155.89 80.81 2 1 ASP B 51 ? ? -64.71 72.43 3 1 ASP B 70 ? ? 37.44 55.57 4 1 ASP B 83 ? ? -127.10 -165.35 5 1 ASP B 99 ? ? -151.90 81.38 6 1 SER B 106 ? ? -49.65 151.49 7 1 LYS B 126 ? ? -151.12 83.30 8 1 ALA B 127 ? ? -37.55 132.78 9 1 PRO B 143 ? ? -40.72 152.90 10 1 SER B 144 ? ? 123.08 122.40 # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 ASP B 83 ? ? 0.392 'SIDE CHAIN' 2 1 ASP B 84 ? ? 0.440 'SIDE CHAIN' # _em_ctf_correction.id 1 _em_ctf_correction.details AUTO3DEM _em_ctf_correction.type . # _em_entity_assembly_molwt.entity_assembly_id 1 _em_entity_assembly_molwt.id 1 _em_entity_assembly_molwt.experimental_flag YES _em_entity_assembly_molwt.value 7 _em_entity_assembly_molwt.units MEGADALTONS # _em_image_processing.id 1 _em_image_processing.image_recording_id 1 _em_image_processing.details ? # _em_image_recording.avg_electron_dose_per_image 15 _em_image_recording.details ? _em_image_recording.id 1 _em_image_recording.film_or_detector_model 'KODAK SO-163 FILM' _em_image_recording.imaging_id 1 _em_image_recording.detector_mode ? _em_image_recording.average_exposure_time ? _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged ? _em_image_recording.num_real_images ? # loop_ _em_software.id _em_software.name _em_software.version _em_software.category _em_software.details _em_software.image_processing_id 1 Situs ? 'MODEL FITTING' ? ? 2 Auto3DEM ? RECONSTRUCTION ? 1 3 EMAN ? RECONSTRUCTION ? 1 # _em_specimen.experiment_id 1 _em_specimen.id 1 _em_specimen.concentration 0.1 _em_specimen.vitrification_applied YES _em_specimen.staining_applied NO _em_specimen.embedding_applied NO _em_specimen.shadowing_applied NO _em_specimen.details ? # _em_virus_natural_host.entity_assembly_id 1 _em_virus_natural_host.id 1 _em_virus_natural_host.ncbi_tax_id 9606 _em_virus_natural_host.organism 'Homo sapiens' _em_virus_natural_host.strain ? # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH #