HEADER STRUCTURAL PROTEIN 01-JUL-14 3J7I TITLE STRUCTURE OF ALPHA- AND BETA- TUBULIN IN GMPCPP-MICROTUBULES COMPND MOL_ID: 1; COMPND 2 MOLECULE: TUBULIN ALPHA-1A CHAIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ALPHA-TUBULIN 1, TUBULIN ALPHA-1 CHAIN; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: TUBULIN BETA CHAIN; COMPND 7 CHAIN: B; COMPND 8 SYNONYM: BETA-TUBULIN SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SUS SCROFA; SOURCE 3 ORGANISM_COMMON: PIG; SOURCE 4 ORGANISM_TAXID: 9823; SOURCE 5 TISSUE: BRAIN; SOURCE 6 MOL_ID: 2; SOURCE 7 ORGANISM_SCIENTIFIC: SUS SCROFA; SOURCE 8 ORGANISM_COMMON: PIG; SOURCE 9 ORGANISM_TAXID: 9823; SOURCE 10 TISSUE: BRAIN KEYWDS MICROTUBULE, TUBULIN, GTP-STATE STRUCTURE, GMPCPP, MICROTUBULE KEYWDS 2 STABILAIZATION, MICOTUBULE POLYMERIZATION, STRUCTURAL PROTEIN EXPDTA ELECTRON MICROSCOPY AUTHOR H.YAJIMA,T.OGURA,R.NITTA,Y.OKADA,C.SATO,N.HIROKAWA REVDAT 3 20-MAR-24 3J7I 1 REMARK LINK REVDAT 2 11-DEC-19 3J7I 1 REMARK REVDAT 1 10-DEC-14 3J7I 0 JRNL AUTH H.YAJIMA,T.OGURA,R.NITTA,Y.OKADA,C.SATO,N.HIROKAWA JRNL TITL CONFORMATIONAL CHANGES IN TUBULIN IN GMPCPP AND GDP-TAXOL JRNL TITL 2 MICROTUBULES OBSERVED BY CRYOELECTRON MICROSCOPY JRNL REF J.CELL BIOL. V. 198 315 2012 JRNL REFN ISSN 0021-9525 JRNL PMID 22851320 JRNL DOI 10.1083/JCB.201201161 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH H.YAJIMA,T.OGURA,R.NITTA,Y.OKADA,C.SATO,N.HIROKAWA REMARK 1 TITL MUTUAL CONFORMATIONAL CHANGES OF KINESIN AND GTP-MICROTUBULE REMARK 1 TITL 2 UPON THEIR BINDING REMARK 1 REF TO BE PUBLISHED REMARK 1 REFN REMARK 2 REMARK 2 RESOLUTION. 8.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : UCSF CHIMERA, IMAGIC, MATLAB REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : 1JFF REMARK 3 REFINEMENT SPACE : REAL REMARK 3 REFINEMENT PROTOCOL : RIGID BODY FIT REMARK 3 REFINEMENT TARGET : CROSS-CORRELATION, AVERAGE MAP REMARK 3 VALUE REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : METHOD--LOCAL REFINEMENT, DOMAIN FITTING REMARK 3 REFINEMENT PROTOCOL--RIGID BODY REFINEMENT DETAILS--INITIAL REMARK 3 LOCAL FITTING WAS DONE BEFORE THE DOMAINS WERE SEPARATELY FITTED REMARK 3 BY USING CHIMERA. REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : 2.500 REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 8.900 REMARK 3 NUMBER OF PARTICLES : 320000 REMARK 3 CTF CORRECTION METHOD : NULL REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 3J7I COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ. REMARK 100 THE DEPOSITION ID IS D_1000160348. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : HELICAL ARRAY REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : GMPCPP-MICROTUBULES REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : NULL REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 6.80 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : 01-JAN-10 REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : 88.00 REMARK 245 MICROSCOPE MODEL : JEOL 2010F REMARK 245 DETECTOR TYPE : KODAK SO-163 FILM REMARK 245 MINIMUM DEFOCUS (NM) : 1300.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 2800.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : 0.00 REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : 0.00 REMARK 245 NOMINAL CS : 3.30 REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 1000.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : 40000 REMARK 245 CALIBRATED MAGNIFICATION : 40000 REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 200 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLN A 35 REMARK 465 MET A 36 REMARK 465 PRO A 37 REMARK 465 SER A 38 REMARK 465 ASP A 39 REMARK 465 LYS A 40 REMARK 465 THR A 41 REMARK 465 ILE A 42 REMARK 465 GLY A 43 REMARK 465 GLY A 44 REMARK 465 GLY A 45 REMARK 465 ASP A 46 REMARK 465 ASP A 47 REMARK 465 SER A 48 REMARK 465 PHE A 49 REMARK 465 ASN A 50 REMARK 465 THR A 51 REMARK 465 PHE A 52 REMARK 465 PHE A 53 REMARK 465 SER A 54 REMARK 465 GLU A 55 REMARK 465 THR A 56 REMARK 465 GLY A 57 REMARK 465 ALA A 58 REMARK 465 GLY A 59 REMARK 465 LYS A 60 REMARK 465 THR A 130 REMARK 465 GLY A 162 REMARK 465 SER A 439 REMARK 465 VAL A 440 REMARK 465 GLU A 441 REMARK 465 GLY A 442 REMARK 465 GLU A 443 REMARK 465 GLY A 444 REMARK 465 GLU A 445 REMARK 465 GLU A 446 REMARK 465 GLU A 447 REMARK 465 GLY A 448 REMARK 465 GLU A 449 REMARK 465 GLU A 450 REMARK 465 TYR A 451 REMARK 465 MET B 1 REMARK 465 GLY B 95 REMARK 465 GLN B 96 REMARK 465 CYS B 129 REMARK 465 ASP B 130 REMARK 465 SER B 140 REMARK 465 LEU B 141 REMARK 465 TYR B 161 REMARK 465 PRO B 162 REMARK 465 ASP B 163 REMARK 465 SER B 174 REMARK 465 PRO B 175 REMARK 465 LYS B 176 REMARK 465 VAL B 177 REMARK 465 SER B 178 REMARK 465 ASP B 437 REMARK 465 ALA B 438 REMARK 465 THR B 439 REMARK 465 ALA B 440 REMARK 465 ASP B 441 REMARK 465 GLU B 442 REMARK 465 GLN B 443 REMARK 465 GLY B 444 REMARK 465 GLU B 445 REMARK 465 PHE B 446 REMARK 465 GLU B 447 REMARK 465 GLU B 448 REMARK 465 GLU B 449 REMARK 465 GLY B 450 REMARK 465 GLU B 451 REMARK 465 GLU B 452 REMARK 465 ASP B 453 REMARK 465 GLU B 454 REMARK 465 ALA B 455 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 THR B 198 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CD2 HIS B 192 CB ASN B 424 0.87 REMARK 500 CG1 ILE A 188 CB PHE A 395 0.96 REMARK 500 CB GLN A 15 O6 GTP A 502 1.08 REMARK 500 CG1 VAL B 181 CE1 PHE B 404 1.08 REMARK 500 CB MET A 154 CD2 HIS A 197 1.09 REMARK 500 CG2 VAL B 344 CG GLN B 436 1.18 REMARK 500 O TYR A 172 CA ASN A 206 1.23 REMARK 500 CG ARG B 264 CB LEU B 428 1.26 REMARK 500 CG1 VAL B 191 CG MET B 425 1.32 REMARK 500 CG HIS B 266 CE2 TYR B 432 1.35 REMARK 500 CB ARG B 264 CD1 LEU B 428 1.38 REMARK 500 CG HIS A 192 CB ALA A 421 1.42 REMARK 500 CB ILE A 188 CB PHE A 395 1.42 REMARK 500 N GLN A 11 O1B GTP A 502 1.46 REMARK 500 CB ILE A 188 CG PHE A 395 1.46 REMARK 500 CG2 THR B 188 CA GLU B 422 1.47 REMARK 500 CE1 HIS B 266 CD2 TYR B 432 1.50 REMARK 500 ND1 HIS B 266 CD2 TYR B 432 1.51 REMARK 500 OE1 GLU A 27 NH2 ARG A 320 1.53 REMARK 500 CB ALA B 104 OE1 GLU B 417 1.53 REMARK 500 CG2 VAL B 182 OH TYR B 408 1.56 REMARK 500 CD2 PHE B 262 O GLU B 431 1.57 REMARK 500 CH2 TRP A 407 NH1 ARG B 253 1.59 REMARK 500 CB HIS A 192 O ALA A 421 1.59 REMARK 500 OD1 ASN B 102 CB TYR B 408 1.59 REMARK 500 CG2 ILE A 188 CG PHE A 395 1.60 REMARK 500 CD2 TYR A 108 O GLY A 412 1.61 REMARK 500 ND1 HIS B 266 CE2 TYR B 432 1.61 REMARK 500 CG ARG B 264 CA LEU B 428 1.62 REMARK 500 CA LEU B 189 CB ALA B 421 1.63 REMARK 500 CD2 HIS A 192 CB ALA A 421 1.63 REMARK 500 CE1 TYR A 108 CE MET A 413 1.65 REMARK 500 CG2 THR A 179 CB LEU B 248 1.66 REMARK 500 CG1 VAL B 181 CD1 PHE B 404 1.66 REMARK 500 CB HIS A 192 C ALA A 421 1.66 REMARK 500 NE2 HIS B 192 CB ASN B 424 1.67 REMARK 500 O ASP A 199 O GLY A 265 1.69 REMARK 500 CB ILE A 188 CD2 PHE A 395 1.70 REMARK 500 OG SER B 155 ND2 ASN B 197 1.71 REMARK 500 OH TYR B 185 CA PHE B 399 1.73 REMARK 500 CG2 THR A 179 CD1 LEU B 248 1.73 REMARK 500 SG CYS A 200 CA PHE A 267 1.74 REMARK 500 CD2 LEU B 189 CB ALA B 421 1.75 REMARK 500 CG HIS B 192 CB ASN B 424 1.77 REMARK 500 CG1 VAL B 191 CB MET B 425 1.78 REMARK 500 CB LEU B 194 CD2 LEU B 265 1.78 REMARK 500 O LEU B 194 CB LEU B 265 1.78 REMARK 500 NE2 GLN A 133 OE1 GLN A 256 1.79 REMARK 500 CB HIS A 192 CB ALA A 421 1.79 REMARK 500 CB GLN B 15 ND2 ASN B 228 1.79 REMARK 500 REMARK 500 THIS ENTRY HAS 168 CLOSE CONTACTS REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ASP B 205 CA ASP B 205 CB -0.153 REMARK 500 ASP B 205 CB ASP B 205 CG -0.199 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 175 C - N - CD ANGL. DEV. = 13.0 DEGREES REMARK 500 ASP A 205 CB - CG - OD1 ANGL. DEV. = -8.4 DEGREES REMARK 500 ASP A 205 CB - CG - OD2 ANGL. DEV. = 5.6 DEGREES REMARK 500 PRO A 298 C - N - CD ANGL. DEV. = 12.7 DEGREES REMARK 500 ALA A 383 CA - C - O ANGL. DEV. = -18.6 DEGREES REMARK 500 ALA A 383 CA - C - N ANGL. DEV. = 17.9 DEGREES REMARK 500 ILE B 204 C - N - CA ANGL. DEV. = 21.9 DEGREES REMARK 500 ILE B 204 CA - CB - CG2 ANGL. DEV. = -13.8 DEGREES REMARK 500 ASP B 205 N - CA - CB ANGL. DEV. = -13.9 DEGREES REMARK 500 ASP B 205 CA - CB - CG ANGL. DEV. = -20.3 DEGREES REMARK 500 ASP B 205 CB - CG - OD1 ANGL. DEV. = -6.8 DEGREES REMARK 500 ASP B 205 N - CA - C ANGL. DEV. = 16.6 DEGREES REMARK 500 ASN B 206 C - N - CA ANGL. DEV. = -20.5 DEGREES REMARK 500 MET B 235 CG - SD - CE ANGL. DEV. = 9.8 DEGREES REMARK 500 PRO B 263 C - N - CA ANGL. DEV. = 13.0 DEGREES REMARK 500 PRO B 263 C - N - CD ANGL. DEV. = -13.6 DEGREES REMARK 500 ALA B 363 CB - CA - C ANGL. DEV. = -11.3 DEGREES REMARK 500 ALA B 363 N - CA - CB ANGL. DEV. = 9.2 DEGREES REMARK 500 GLU B 386 C - N - CA ANGL. DEV. = -19.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 23 -38.32 -38.56 REMARK 500 TYR A 24 -80.11 -51.97 REMARK 500 GLN A 31 -179.88 -53.34 REMARK 500 PRO A 32 -59.27 -29.30 REMARK 500 PRO A 63 -153.19 -59.21 REMARK 500 ARG A 64 44.21 -166.18 REMARK 500 PRO A 89 3.90 -52.69 REMARK 500 THR A 94 -83.15 -129.34 REMARK 500 LYS A 96 40.98 170.12 REMARK 500 ALA A 100 112.12 74.23 REMARK 500 ASN A 101 43.67 -73.51 REMARK 500 TYR A 103 -79.62 -38.66 REMARK 500 ALA A 104 -70.07 -21.23 REMARK 500 TYR A 108 -116.88 -70.92 REMARK 500 THR A 109 -94.15 -11.84 REMARK 500 ILE A 110 -70.80 -67.60 REMARK 500 GLU A 113 -38.78 -39.94 REMARK 500 ASP A 116 -73.08 -39.94 REMARK 500 HIS A 139 -81.45 -161.98 REMARK 500 SER A 140 163.79 168.64 REMARK 500 PHE A 141 -96.45 -77.26 REMARK 500 SER A 147 -70.65 -83.85 REMARK 500 PHE A 149 -74.61 -26.76 REMARK 500 SER A 158 -18.74 -48.38 REMARK 500 ASP A 160 -83.12 -70.91 REMARK 500 LYS A 164 -155.63 -102.55 REMARK 500 TYR A 172 -157.80 -131.37 REMARK 500 ALA A 174 142.09 90.07 REMARK 500 VAL A 177 57.66 -112.15 REMARK 500 THR A 179 -77.42 -116.18 REMARK 500 GLU A 183 -63.98 6.86 REMARK 500 HIS A 197 -64.35 -97.18 REMARK 500 MET A 203 78.39 -104.01 REMARK 500 GLU A 207 -12.29 167.65 REMARK 500 LEU A 217 -23.19 176.43 REMARK 500 ASP A 218 103.98 55.81 REMARK 500 ILE A 219 119.54 179.85 REMARK 500 ARG A 221 71.94 -106.55 REMARK 500 GLN A 233 -62.52 -97.73 REMARK 500 ILE A 238 -87.72 -73.49 REMARK 500 THR A 239 -86.99 -66.75 REMARK 500 ALA A 240 -90.34 -10.53 REMARK 500 ASP A 245 157.47 -39.78 REMARK 500 LEU A 248 43.44 -156.39 REMARK 500 ASN A 249 148.51 -29.16 REMARK 500 GLU A 254 -53.85 -28.02 REMARK 500 PHE A 255 -88.19 -47.83 REMARK 500 PRO A 263 -31.21 -30.47 REMARK 500 HIS A 266 136.84 -11.61 REMARK 500 ALA A 273 -71.44 -94.10 REMARK 500 REMARK 500 THIS ENTRY HAS 172 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 PHE A 202 18.94 REMARK 500 ASN B 380 -15.76 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 501 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 69 OD2 REMARK 620 2 ASP A 69 OD1 59.8 REMARK 620 3 GTP A 502 O1G 125.5 65.8 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 501 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 71 OE2 REMARK 620 2 GTP B 502 O1G 97.5 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GTP A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GTP B 502 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-2697 RELATED DB: EMDB REMARK 900 3D STRUCTURE OF GMPCPP MICROTUBULES BY CRYOELECTRON MICROSCOPY REMARK 999 REMARK 999 SEQUENCE REMARK 999 THIS SEQUENCE IS NATURAL VARIANT. DBREF 3J7I A 1 451 UNP P02550 TBA1A_PIG 1 451 DBREF 3J7I B 1 455 UNP P02554 TBB_PIG 1 445 SEQADV 3J7I GLY A 265 UNP P02550 ALA 265 SEE REMARK 999 SEQRES 1 A 451 MET ARG GLU CYS ILE SER ILE HIS VAL GLY GLN ALA GLY SEQRES 2 A 451 VAL GLN ILE GLY ASN ALA CYS TRP GLU LEU TYR CYS LEU SEQRES 3 A 451 GLU HIS GLY ILE GLN PRO ASP GLY GLN MET PRO SER ASP SEQRES 4 A 451 LYS THR ILE GLY GLY GLY ASP ASP SER PHE ASN THR PHE SEQRES 5 A 451 PHE SER GLU THR GLY ALA GLY LYS HIS VAL PRO ARG ALA SEQRES 6 A 451 VAL PHE VAL ASP LEU GLU PRO THR VAL ILE ASP GLU VAL SEQRES 7 A 451 ARG THR GLY THR TYR ARG GLN LEU PHE HIS PRO GLU GLN SEQRES 8 A 451 LEU ILE THR GLY LYS GLU ASP ALA ALA ASN ASN TYR ALA SEQRES 9 A 451 ARG GLY HIS TYR THR ILE GLY LYS GLU ILE ILE ASP LEU SEQRES 10 A 451 VAL LEU ASP ARG ILE ARG LYS LEU ALA ASP GLN CYS THR SEQRES 11 A 451 GLY LEU GLN GLY PHE SER VAL PHE HIS SER PHE GLY GLY SEQRES 12 A 451 GLY THR GLY SER GLY PHE THR SER LEU LEU MET GLU ARG SEQRES 13 A 451 LEU SER VAL ASP TYR GLY LYS LYS SER LYS LEU GLU PHE SEQRES 14 A 451 SER ILE TYR PRO ALA PRO GLN VAL SER THR ALA VAL VAL SEQRES 15 A 451 GLU PRO TYR ASN SER ILE LEU THR THR HIS THR THR LEU SEQRES 16 A 451 GLU HIS SER ASP CYS ALA PHE MET VAL ASP ASN GLU ALA SEQRES 17 A 451 ILE TYR ASP ILE CYS ARG ARG ASN LEU ASP ILE GLU ARG SEQRES 18 A 451 PRO THR TYR THR ASN LEU ASN ARG LEU ILE GLY GLN ILE SEQRES 19 A 451 VAL SER SER ILE THR ALA SER LEU ARG PHE ASP GLY ALA SEQRES 20 A 451 LEU ASN VAL ASP LEU THR GLU PHE GLN THR ASN LEU VAL SEQRES 21 A 451 PRO TYR PRO ARG GLY HIS PHE PRO LEU ALA THR TYR ALA SEQRES 22 A 451 PRO VAL ILE SER ALA GLU LYS ALA TYR HIS GLU GLN LEU SEQRES 23 A 451 SER VAL ALA GLU ILE THR ASN ALA CYS PHE GLU PRO ALA SEQRES 24 A 451 ASN GLN MET VAL LYS CYS ASP PRO ARG HIS GLY LYS TYR SEQRES 25 A 451 MET ALA CYS CYS LEU LEU TYR ARG GLY ASP VAL VAL PRO SEQRES 26 A 451 LYS ASP VAL ASN ALA ALA ILE ALA THR ILE LYS THR LYS SEQRES 27 A 451 ARG THR ILE GLN PHE VAL ASP TRP CYS PRO THR GLY PHE SEQRES 28 A 451 LYS VAL GLY ILE ASN TYR GLU PRO PRO THR VAL VAL PRO SEQRES 29 A 451 GLY GLY ASP LEU ALA LYS VAL GLN ARG ALA VAL CYS MET SEQRES 30 A 451 LEU SER ASN THR THR ALA ILE ALA GLU ALA TRP ALA ARG SEQRES 31 A 451 LEU ASP HIS LYS PHE ASP LEU MET TYR ALA LYS ARG ALA SEQRES 32 A 451 PHE VAL HIS TRP TYR VAL GLY GLU GLY MET GLU GLU GLY SEQRES 33 A 451 GLU PHE SER GLU ALA ARG GLU ASP MET ALA ALA LEU GLU SEQRES 34 A 451 LYS ASP TYR GLU GLU VAL GLY VAL ASP SER VAL GLU GLY SEQRES 35 A 451 GLU GLY GLU GLU GLU GLY GLU GLU TYR SEQRES 1 B 445 MET ARG GLU ILE VAL HIS ILE GLN ALA GLY GLN CYS GLY SEQRES 2 B 445 ASN GLN ILE GLY ALA LYS PHE TRP GLU VAL ILE SER ASP SEQRES 3 B 445 GLU HIS GLY ILE ASP PRO THR GLY SER TYR HIS GLY ASP SEQRES 4 B 445 SER ASP LEU GLN LEU GLU ARG ILE ASN VAL TYR TYR ASN SEQRES 5 B 445 GLU ALA ALA GLY ASN LYS TYR VAL PRO ARG ALA ILE LEU SEQRES 6 B 445 VAL ASP LEU GLU PRO GLY THR MET ASP SER VAL ARG SER SEQRES 7 B 445 GLY PRO PHE GLY GLN ILE PHE ARG PRO ASP ASN PHE VAL SEQRES 8 B 445 PHE GLY GLN SER GLY ALA GLY ASN ASN TRP ALA LYS GLY SEQRES 9 B 445 HIS TYR THR GLU GLY ALA GLU LEU VAL ASP SER VAL LEU SEQRES 10 B 445 ASP VAL VAL ARG LYS GLU SER GLU SER CYS ASP CYS LEU SEQRES 11 B 445 GLN GLY PHE GLN LEU THR HIS SER LEU GLY GLY GLY THR SEQRES 12 B 445 GLY SER GLY MET GLY THR LEU LEU ILE SER LYS ILE ARG SEQRES 13 B 445 GLU GLU TYR PRO ASP ARG ILE MET ASN THR PHE SER VAL SEQRES 14 B 445 VAL PRO SER PRO LYS VAL SER ASP THR VAL VAL GLU PRO SEQRES 15 B 445 TYR ASN ALA THR LEU SER VAL HIS GLN LEU VAL GLU ASN SEQRES 16 B 445 THR ASP GLU THR TYR CYS ILE ASP ASN GLU ALA LEU TYR SEQRES 17 B 445 ASP ILE CYS PHE ARG THR LEU LYS LEU THR THR PRO THR SEQRES 18 B 445 TYR GLY ASP LEU ASN HIS LEU VAL SER ALA THR MET SER SEQRES 19 B 445 GLY VAL THR THR CYS LEU ARG PHE PRO GLY GLN LEU ASN SEQRES 20 B 445 ALA ASP LEU ARG LYS LEU ALA VAL ASN MET VAL PRO PHE SEQRES 21 B 445 PRO ARG LEU HIS PHE PHE MET PRO GLY PHE ALA PRO LEU SEQRES 22 B 445 THR SER ARG GLY SER GLN GLN TYR ARG ALA LEU THR VAL SEQRES 23 B 445 PRO GLU LEU THR GLN GLN MET PHE ASP ALA LYS ASN MET SEQRES 24 B 445 MET ALA ALA CYS ASP PRO ARG HIS GLY ARG TYR LEU THR SEQRES 25 B 445 VAL ALA ALA VAL PHE ARG GLY ARG MET SER MET LYS GLU SEQRES 26 B 445 VAL ASP GLU GLN MET LEU ASN VAL GLN ASN LYS ASN SER SEQRES 27 B 445 SER TYR PHE VAL GLU TRP ILE PRO ASN ASN VAL LYS THR SEQRES 28 B 445 ALA VAL CYS ASP ILE PRO PRO ARG GLY LEU LYS MET SER SEQRES 29 B 445 ALA THR PHE ILE GLY ASN SER THR ALA ILE GLN GLU LEU SEQRES 30 B 445 PHE LYS ARG ILE SER GLU GLN PHE THR ALA MET PHE ARG SEQRES 31 B 445 ARG LYS ALA PHE LEU HIS TRP TYR THR GLY GLU GLY MET SEQRES 32 B 445 ASP GLU MET GLU PHE THR GLU ALA GLU SER ASN MET ASN SEQRES 33 B 445 ASP LEU VAL SER GLU TYR GLN GLN TYR GLN ASP ALA THR SEQRES 34 B 445 ALA ASP GLU GLN GLY GLU PHE GLU GLU GLU GLY GLU GLU SEQRES 35 B 445 ASP GLU ALA HET MG A 501 1 HET GTP A 502 32 HET MG B 501 1 HET GTP B 502 32 HETNAM MG MAGNESIUM ION HETNAM GTP GUANOSINE-5'-TRIPHOSPHATE FORMUL 3 MG 2(MG 2+) FORMUL 4 GTP 2(C10 H16 N5 O14 P3) HELIX 1 1 GLY A 10 GLU A 27 1 18 HELIX 2 2 GLU A 71 GLY A 81 1 11 HELIX 3 3 ASN A 102 TYR A 108 1 7 HELIX 4 4 TYR A 108 CYS A 129 1 22 HELIX 5 5 SER A 147 ASP A 160 1 14 HELIX 6 6 GLU A 183 THR A 193 1 11 HELIX 7 7 GLU A 207 ASN A 216 1 10 HELIX 8 8 THR A 223 ARG A 243 1 21 HELIX 9 9 ASP A 251 VAL A 260 1 10 HELIX 10 10 SER A 287 THR A 292 1 6 HELIX 11 11 ASN A 293 PHE A 296 5 4 HELIX 12 12 VAL A 324 THR A 337 1 14 HELIX 13 13 ILE A 384 ALA A 400 1 17 HELIX 14 14 LYS A 401 PHE A 404 5 4 HELIX 15 15 VAL A 405 GLY A 410 1 6 HELIX 16 16 GLU A 414 LYS A 430 1 17 HELIX 17 17 LYS A 430 VAL A 435 1 6 HELIX 18 18 GLN B 11 GLU B 27 1 17 HELIX 19 19 ARG B 48 TYR B 53 5 6 HELIX 20 20 GLU B 71 ARG B 79 1 9 HELIX 21 21 PRO B 82 ILE B 86 5 5 HELIX 22 22 ARG B 88 ASP B 90 5 3 HELIX 23 23 GLU B 110 GLU B 127 1 18 HELIX 24 24 GLY B 143 ARG B 158 1 16 HELIX 25 25 GLU B 183 ASN B 197 1 15 HELIX 26 26 ASP B 205 ARG B 215 1 11 HELIX 27 27 THR B 223 ARG B 243 1 21 HELIX 28 28 ASP B 251 VAL B 260 1 10 HELIX 29 29 VAL B 288 PHE B 296 1 9 HELIX 30 30 ASP B 306 GLY B 310 5 5 HELIX 31 31 SER B 324 ASN B 339 1 16 HELIX 32 32 LEU B 387 ARG B 400 1 14 HELIX 33 33 LYS B 402 PHE B 404 5 3 HELIX 34 34 LEU B 405 GLY B 410 1 6 HELIX 35 35 ASP B 414 GLN B 434 1 21 SHEET 1 A 5 ALA A 65 VAL A 68 0 SHEET 2 A 5 CYS A 4 VAL A 9 1 N SER A 6 O VAL A 66 SHEET 3 A 5 GLY A 134 HIS A 139 1 O SER A 136 N ILE A 5 SHEET 4 A 5 LEU A 167 ILE A 171 1 O PHE A 169 N VAL A 137 SHEET 5 A 5 CYS A 200 VAL A 204 1 O PHE A 202 N SER A 170 SHEET 1 B 4 LEU A 269 THR A 271 0 SHEET 2 B 4 ARG A 373 THR A 381 -1 O SER A 379 N LEU A 269 SHEET 3 B 4 TYR A 312 GLY A 321 -1 N CYS A 316 O LEU A 378 SHEET 4 B 4 PHE A 351 ILE A 355 1 O GLY A 354 N TYR A 319 SHEET 1 C 5 PHE B 92 VAL B 93 0 SHEET 2 C 5 ALA B 65 VAL B 68 1 N LEU B 67 O VAL B 93 SHEET 3 C 5 HIS B 6 ALA B 9 1 N GLN B 8 O ILE B 66 SHEET 4 C 5 GLY B 134 HIS B 139 1 O THR B 138 N ILE B 7 SHEET 5 C 5 ILE B 165 SER B 170 1 O PHE B 169 N LEU B 137 SHEET 1 D 4 MET B 269 GLY B 271 0 SHEET 2 D 4 ALA B 375 GLY B 379 -1 O PHE B 377 N GLY B 271 SHEET 3 D 4 VAL B 315 ARG B 320 -1 N VAL B 318 O THR B 376 SHEET 4 D 4 VAL B 351 CYS B 356 1 O CYS B 356 N PHE B 319 LINK OD2 ASP A 69 MG MG A 501 1555 1555 1.71 LINK OD1 ASP A 69 MG MG A 501 1555 1555 2.49 LINK MG MG A 501 O1G GTP A 502 1555 1555 2.20 LINK OE2 GLU B 71 MG MG B 501 1555 1555 2.16 LINK MG MG B 501 O1G GTP B 502 1555 1555 2.79 CISPEP 1 PRO A 173 ALA A 174 0 5.42 SITE 1 AC1 4 ASP A 69 GLU A 71 VAL A 74 GTP A 502 SITE 1 AC2 15 GLY A 10 GLN A 11 ALA A 12 GLN A 15 SITE 2 AC2 15 ILE A 16 ASP A 69 LEU A 70 GLU A 71 SITE 3 AC2 15 ILE A 171 TYR A 224 ASN A 228 MG A 501 SITE 4 AC2 15 PRO B 245 GLY B 246 GLN B 247 SITE 1 AC3 2 GLU B 71 GTP B 502 SITE 1 AC4 8 GLN B 11 CYS B 12 GLN B 15 ASN B 206 SITE 2 AC4 8 TYR B 224 LEU B 227 ASN B 228 MG B 501 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000