HEADER VIRAL PROTEIN 09-JAN-15 3J9D TITLE ATOMIC STRUCTURE OF A NON-ENVELOPED VIRUS REVEALS PH SENSORS FOR A TITLE 2 COORDINATED PROCESS OF CELL ENTRY COMPND MOL_ID: 1; COMPND 2 MOLECULE: OUTER CAPSID PROTEIN VP2; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: VP2 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BLUETONGUE VIRUS 1; SOURCE 3 ORGANISM_TAXID: 35327 KEYWDS NON-ENVELOPED VIRUS, CELL ENTRY, PH SENSOR, VIRAL PROTEIN EXPDTA ELECTRON MICROSCOPY AUTHOR X.ZHANG,A.PATEL,C.CELMA,P.ROY,Z.H.ZHOU REVDAT 6 21-FEB-24 3J9D 1 REMARK LINK REVDAT 5 18-DEC-19 3J9D 1 SCALE REVDAT 4 18-JUL-18 3J9D 1 REMARK REVDAT 3 20-JAN-16 3J9D 1 JRNL REVDAT 2 23-DEC-15 3J9D 1 JRNL REVDAT 1 09-DEC-15 3J9D 0 JRNL AUTH X.ZHANG,A.PATEL,C.C.CELMA,X.YU,P.ROY,Z.H.ZHOU JRNL TITL ATOMIC MODEL OF A NONENVELOPED VIRUS REVEALS PH SENSORS FOR JRNL TITL 2 A COORDINATED PROCESS OF CELL ENTRY. JRNL REF NAT.STRUCT.MOL.BIOL. V. 23 74 2016 JRNL REFN ISSN 1545-9993 JRNL PMID 26641711 JRNL DOI 10.1038/NSMB.3134 REMARK 2 REMARK 2 RESOLUTION. 3.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : FREALIGN REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : NULL REMARK 3 REFINEMENT PROTOCOL : NULL REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : 1.010 REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 3.300 REMARK 3 NUMBER OF PARTICLES : 5008 REMARK 3 CTF CORRECTION METHOD : NULL REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 3J9D COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-JAN-15. REMARK 100 THE DEPOSITION ID IS D_1000160415. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : VITREOUS ICE (CRYO EM) REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : BLUETONGUE VIRUS 1; VP2 OF REMARK 245 BLUETONGUE VIRUS REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : NULL REMARK 245 SAMPLE SUPPORT DETAILS : 400 MESH GRID WITH THIN CARBON REMARK 245 SUPPORT REMARK 245 SAMPLE VITRIFICATION DETAILS : PLUNGED INTO LIQUID ETHANE (FEI REMARK 245 VITROBOT MARK IV). REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 8.80 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : 29-NOV-13 REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : 82.00 REMARK 245 MICROSCOPE MODEL : FEI TITAN KRIOS REMARK 245 DETECTOR TYPE : GATAN K2 (4K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 700.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 3300.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : 2.70 REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 2000.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : 14000 REMARK 245 CALIBRATED MAGNIFICATION : 24140 REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PRO A 191 REMARK 465 THR A 192 REMARK 465 TYR A 193 REMARK 465 ASP A 194 REMARK 465 ILE A 195 REMARK 465 VAL A 196 REMARK 465 VAL A 197 REMARK 465 HIS A 198 REMARK 465 ALA A 199 REMARK 465 GLU A 200 REMARK 465 ARG A 201 REMARK 465 ARG A 202 REMARK 465 ASP A 203 REMARK 465 ARG A 204 REMARK 465 SER A 205 REMARK 465 GLN A 206 REMARK 465 PRO A 207 REMARK 465 PHE A 208 REMARK 465 ARG A 209 REMARK 465 PRO A 210 REMARK 465 GLY A 211 REMARK 465 ASP A 212 REMARK 465 GLN A 213 REMARK 465 THR A 214 REMARK 465 LEU A 215 REMARK 465 ILE A 216 REMARK 465 ASN A 217 REMARK 465 PHE A 218 REMARK 465 GLY A 219 REMARK 465 ARG A 220 REMARK 465 GLY A 221 REMARK 465 GLN A 222 REMARK 465 LYS A 223 REMARK 465 VAL A 224 REMARK 465 THR A 225 REMARK 465 MET A 226 REMARK 465 ASN A 227 REMARK 465 HIS A 228 REMARK 465 ASN A 229 REMARK 465 SER A 230 REMARK 465 TYR A 231 REMARK 465 ASP A 232 REMARK 465 LYS A 233 REMARK 465 MET A 234 REMARK 465 VAL A 235 REMARK 465 GLU A 236 REMARK 465 GLY A 237 REMARK 465 LEU A 238 REMARK 465 ALA A 239 REMARK 465 HIS A 240 REMARK 465 LEU A 241 REMARK 465 VAL A 242 REMARK 465 ILE A 243 REMARK 465 ARG A 244 REMARK 465 GLY A 245 REMARK 465 LYS A 246 REMARK 465 ILE A 247 REMARK 465 PRO A 248 REMARK 465 GLU A 249 REMARK 465 VAL A 250 REMARK 465 ILE A 251 REMARK 465 ARG A 252 REMARK 465 ASP A 253 REMARK 465 ASP A 254 REMARK 465 ILE A 255 REMARK 465 ALA A 256 REMARK 465 SER A 257 REMARK 465 LEU A 258 REMARK 465 ASP A 259 REMARK 465 GLU A 260 REMARK 465 ILE A 261 REMARK 465 CYS A 262 REMARK 465 ASN A 263 REMARK 465 ARG A 264 REMARK 465 TRP A 265 REMARK 465 ILE A 266 REMARK 465 GLN A 267 REMARK 465 SER A 268 REMARK 465 ARG A 269 REMARK 465 HIS A 270 REMARK 465 ASP A 271 REMARK 465 PRO A 272 REMARK 465 GLY A 273 REMARK 465 GLU A 274 REMARK 465 ILE A 275 REMARK 465 LYS A 276 REMARK 465 ALA A 277 REMARK 465 TYR A 278 REMARK 465 GLU A 279 REMARK 465 LEU A 280 REMARK 465 CYS A 281 REMARK 465 LYS A 282 REMARK 465 ILE A 283 REMARK 465 LEU A 284 REMARK 465 SER A 285 REMARK 465 THR A 286 REMARK 465 ILE A 287 REMARK 465 GLY A 288 REMARK 465 ARG A 289 REMARK 465 LYS A 290 REMARK 465 VAL A 291 REMARK 465 LEU A 292 REMARK 465 ASP A 293 REMARK 465 ARG A 294 REMARK 465 GLU A 295 REMARK 465 LYS A 296 REMARK 465 GLU A 297 REMARK 465 PRO A 298 REMARK 465 GLU A 299 REMARK 465 ASP A 300 REMARK 465 GLU A 301 REMARK 465 ALA A 302 REMARK 465 SER A 303 REMARK 465 LEU A 304 REMARK 465 SER A 305 REMARK 465 ILE A 306 REMARK 465 ARG A 307 REMARK 465 PHE A 308 REMARK 465 GLN A 309 REMARK 465 GLU A 310 REMARK 465 ALA A 311 REMARK 465 ILE A 312 REMARK 465 ASP A 313 REMARK 465 ASN A 314 REMARK 465 LYS A 315 REMARK 465 PHE A 316 REMARK 465 ARG A 317 REMARK 465 GLN A 318 REMARK 465 HIS A 319 REMARK 465 ASP A 320 REMARK 465 PRO A 321 REMARK 465 GLU A 322 REMARK 465 ARG A 323 REMARK 465 LEU A 324 REMARK 465 LYS A 325 REMARK 465 ILE A 326 REMARK 465 PHE A 327 REMARK 465 GLU A 328 REMARK 465 HIS A 329 REMARK 465 ARG A 330 REMARK 465 ASN A 331 REMARK 465 GLN A 332 REMARK 465 ARG A 333 REMARK 465 ARG A 334 REMARK 465 ASP A 335 REMARK 465 GLU A 336 REMARK 465 ASP A 337 REMARK 465 ARG A 338 REMARK 465 PHE A 339 REMARK 465 TYR A 340 REMARK 465 ILE A 341 REMARK 465 LEU A 342 REMARK 465 LEU A 343 REMARK 465 MET A 344 REMARK 465 ILE A 345 REMARK 465 ALA A 346 REMARK 465 ALA A 347 REMARK 465 SER A 348 REMARK 465 ASP A 349 REMARK 465 THR A 350 REMARK 465 PHE A 351 REMARK 465 ASN A 352 REMARK 465 THR A 353 REMARK 465 ARG A 354 REMARK 465 VAL A 355 REMARK 465 TRP A 356 REMARK 465 TRP A 357 REMARK 465 SER A 358 REMARK 465 ASN A 359 REMARK 465 PRO A 360 REMARK 465 TYR A 361 REMARK 465 PRO A 362 REMARK 465 CYS A 363 REMARK 465 LEU A 364 REMARK 465 ARG A 365 REMARK 465 GLY A 366 REMARK 465 THR A 367 REMARK 465 LEU A 368 REMARK 465 ILE A 369 REMARK 465 ALA A 370 REMARK 465 SER A 371 REMARK 465 GLU A 372 REMARK 465 THR A 373 REMARK 465 LYS A 374 REMARK 465 LEU A 375 REMARK 465 GLY A 376 REMARK 465 ASP A 377 REMARK 465 VAL A 378 REMARK 465 TYR A 379 REMARK 465 SER A 380 REMARK 465 MET A 381 REMARK 465 MET A 382 REMARK 465 ARG A 383 REMARK 465 SER A 384 REMARK 465 TRP A 385 REMARK 465 TYR A 386 REMARK 465 ASP A 387 REMARK 465 TRP A 388 REMARK 465 SER A 389 REMARK 465 VAL A 390 REMARK 465 ARG A 391 REMARK 465 PRO A 392 REMARK 465 THR A 393 REMARK 465 TYR A 394 REMARK 465 THR A 395 REMARK 465 PRO A 396 REMARK 465 TYR A 397 REMARK 465 GLU A 398 REMARK 465 LYS A 399 REMARK 465 THR A 400 REMARK 465 ARG A 401 REMARK 465 GLU A 402 REMARK 465 GLN A 403 REMARK 465 GLU A 404 REMARK 465 LYS A 405 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN A 478 O REMARK 470 SER A 671 O REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O PHE A 803 N LYS A 805 2.13 REMARK 500 NE ARG A 74 OD2 ASP A 114 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 156 CB GLU A 156 CG 0.158 REMARK 500 GLU A 156 CG GLU A 156 CD 0.128 REMARK 500 TYR A 465 CG TYR A 465 CD2 0.320 REMARK 500 TYR A 465 CG TYR A 465 CD1 0.318 REMARK 500 TYR A 465 CD1 TYR A 465 CE1 0.670 REMARK 500 TYR A 465 CE1 TYR A 465 CZ 0.431 REMARK 500 TYR A 465 CZ TYR A 465 CE2 0.420 REMARK 500 TYR A 465 CE2 TYR A 465 CD2 0.678 REMARK 500 MET A 771 SD MET A 771 CE 1.186 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 64 C - N - CA ANGL. DEV. = 17.4 DEGREES REMARK 500 PRO A 64 C - N - CD ANGL. DEV. = -16.4 DEGREES REMARK 500 PRO A 654 C - N - CA ANGL. DEV. = -14.8 DEGREES REMARK 500 LEU A 723 CA - CB - CG ANGL. DEV. = 17.9 DEGREES REMARK 500 LEU A 724 CA - CB - CG ANGL. DEV. = 14.3 DEGREES REMARK 500 MET A 771 CG - SD - CE ANGL. DEV. = 29.3 DEGREES REMARK 500 GLY A 778 N - CA - C ANGL. DEV. = -16.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 2 -49.39 80.70 REMARK 500 GLU A 15 -0.93 53.42 REMARK 500 ALA A 48 173.82 133.26 REMARK 500 ASN A 128 -15.15 -141.31 REMARK 500 VAL A 129 72.08 45.88 REMARK 500 PHE A 179 16.39 -144.73 REMARK 500 GLN A 183 135.79 -170.17 REMARK 500 TYR A 408 168.44 70.62 REMARK 500 VAL A 417 66.85 39.78 REMARK 500 TYR A 429 89.17 -155.56 REMARK 500 HIS A 433 112.07 -174.36 REMARK 500 THR A 435 77.51 58.70 REMARK 500 GLN A 442 -155.79 -74.69 REMARK 500 GLU A 451 58.44 -102.49 REMARK 500 THR A 506 -94.40 -113.18 REMARK 500 THR A 507 -38.50 -132.41 REMARK 500 VAL A 511 64.86 36.05 REMARK 500 TYR A 516 19.17 -166.68 REMARK 500 LYS A 529 34.68 -160.62 REMARK 500 GLN A 539 -0.24 60.39 REMARK 500 ARG A 540 -163.22 46.86 REMARK 500 ASP A 544 91.55 -176.71 REMARK 500 GLN A 584 119.55 -172.91 REMARK 500 ILE A 612 129.53 -178.97 REMARK 500 PRO A 654 30.89 -89.01 REMARK 500 HIS A 658 -47.41 60.26 REMARK 500 VAL A 668 0.46 -152.76 REMARK 500 ARG A 684 10.39 59.07 REMARK 500 SER A 729 -86.22 -72.07 REMARK 500 HIS A 756 105.07 -164.67 REMARK 500 GLN A 758 -13.94 98.00 REMARK 500 THR A 767 -156.67 -84.15 REMARK 500 VAL A 770 67.72 66.79 REMARK 500 ASN A 781 29.33 -165.85 REMARK 500 LEU A 786 -0.85 71.62 REMARK 500 SER A 804 -25.04 7.74 REMARK 500 LEU A 806 -165.91 51.47 REMARK 500 ASN A 807 -146.21 -140.98 REMARK 500 CYS A 851 -98.07 -135.65 REMARK 500 ARG A 880 -70.76 -62.52 REMARK 500 SER A 897 20.43 -171.10 REMARK 500 GLU A 920 -156.75 -100.76 REMARK 500 ILE A 922 -58.98 72.38 REMARK 500 LEU A 932 92.23 -63.81 REMARK 500 LEU A 933 -132.91 59.99 REMARK 500 PHE A 944 73.69 -113.41 REMARK 500 PHE A 949 16.03 -146.18 REMARK 500 GLU A 953 55.14 -90.17 REMARK 500 ASN A 960 20.36 -69.88 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 VAL A 27 GLY A 28 38.21 REMARK 500 VAL A 34 GLY A 35 -149.18 REMARK 500 HIS A 38 ASP A 39 -145.72 REMARK 500 TYR A 49 ASP A 50 -148.28 REMARK 500 SER A 55 ILE A 56 -148.27 REMARK 500 TYR A 62 ASN A 63 -149.29 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1001 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 162 SG REMARK 620 2 HIS A 164 NE2 92.1 REMARK 620 3 CYS A 617 SG 108.8 123.1 REMARK 620 4 CYS A 851 SG 93.1 95.5 133.5 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1001 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-6239 RELATED DB: EMDB REMARK 900 RELATED ID: EMD-6240 RELATED DB: EMDB REMARK 900 RELATED ID: 3J9E RELATED DB: PDB DBREF 3J9D A 1 961 UNP B7U676 B7U676_9REOV 1 961 SEQRES 1 A 961 MET ASP GLU LEU GLY ILE PRO VAL TYR LYS ARG GLY PHE SEQRES 2 A 961 PRO GLU HIS LEU LEU ARG GLY TYR GLU PHE ILE ILE ASP SEQRES 3 A 961 VAL GLY THR LYS ILE GLU SER VAL GLY GLY ARG HIS ASP SEQRES 4 A 961 VAL THR LYS ILE PRO GLU MET ASN ALA TYR ASP ILE LYS SEQRES 5 A 961 GLN GLU SER ILE ARG THR ALA LEU TRP TYR ASN PRO ILE SEQRES 6 A 961 ARG ASN ASP GLY PHE VAL LEU PRO ARG VAL LEU ASP ILE SEQRES 7 A 961 THR LEU ARG GLY TYR ASP GLU ARG ARG ALA VAL VAL GLU SEQRES 8 A 961 SER THR ARG HIS LYS SER PHE HIS THR ASN ASP GLN TRP SEQRES 9 A 961 VAL GLN TRP MET MET LYS ASP SER MET ASP ALA GLN PRO SEQRES 10 A 961 LEU LYS VAL GLY LEU ASP ASP GLN SER ARG ASN VAL ALA SEQRES 11 A 961 HIS SER LEU HIS ASN CYS VAL VAL LYS ILE ASP SER LYS SEQRES 12 A 961 LYS ALA ASP THR MET SER TYR HIS VAL GLU PRO ILE GLU SEQRES 13 A 961 ASP ALA SER LYS GLY CYS LEU HIS THR ARG THR MET MET SEQRES 14 A 961 TRP ASN HIS LEU VAL ARG ILE GLU THR PHE HIS ALA ALA SEQRES 15 A 961 GLN GLU VAL ALA TYR THR LEU LYS PRO THR TYR ASP ILE SEQRES 16 A 961 VAL VAL HIS ALA GLU ARG ARG ASP ARG SER GLN PRO PHE SEQRES 17 A 961 ARG PRO GLY ASP GLN THR LEU ILE ASN PHE GLY ARG GLY SEQRES 18 A 961 GLN LYS VAL THR MET ASN HIS ASN SER TYR ASP LYS MET SEQRES 19 A 961 VAL GLU GLY LEU ALA HIS LEU VAL ILE ARG GLY LYS ILE SEQRES 20 A 961 PRO GLU VAL ILE ARG ASP ASP ILE ALA SER LEU ASP GLU SEQRES 21 A 961 ILE CYS ASN ARG TRP ILE GLN SER ARG HIS ASP PRO GLY SEQRES 22 A 961 GLU ILE LYS ALA TYR GLU LEU CYS LYS ILE LEU SER THR SEQRES 23 A 961 ILE GLY ARG LYS VAL LEU ASP ARG GLU LYS GLU PRO GLU SEQRES 24 A 961 ASP GLU ALA SER LEU SER ILE ARG PHE GLN GLU ALA ILE SEQRES 25 A 961 ASP ASN LYS PHE ARG GLN HIS ASP PRO GLU ARG LEU LYS SEQRES 26 A 961 ILE PHE GLU HIS ARG ASN GLN ARG ARG ASP GLU ASP ARG SEQRES 27 A 961 PHE TYR ILE LEU LEU MET ILE ALA ALA SER ASP THR PHE SEQRES 28 A 961 ASN THR ARG VAL TRP TRP SER ASN PRO TYR PRO CYS LEU SEQRES 29 A 961 ARG GLY THR LEU ILE ALA SER GLU THR LYS LEU GLY ASP SEQRES 30 A 961 VAL TYR SER MET MET ARG SER TRP TYR ASP TRP SER VAL SEQRES 31 A 961 ARG PRO THR TYR THR PRO TYR GLU LYS THR ARG GLU GLN SEQRES 32 A 961 GLU LYS TYR ILE TYR GLY ARG VAL ASN LEU PHE ASP PHE SEQRES 33 A 961 VAL ALA GLU PRO GLY ILE LYS ILE VAL HIS TRP GLU TYR SEQRES 34 A 961 ARG LEU ASN HIS SER THR ARG GLU ILE THR TYR ALA GLN SEQRES 35 A 961 GLY ASN PRO CYS ASP LEU TYR PRO GLU ASP ASP ASP VAL SEQRES 36 A 961 ILE VAL THR LYS PHE ASP ASP VAL ALA TYR GLY GLN MET SEQRES 37 A 961 ILE ASN GLU MET ILE ASN GLY GLY TRP ASN GLN GLU GLN SEQRES 38 A 961 PHE LYS MET HIS LYS ILE LEU LYS SER GLU GLY ASN VAL SEQRES 39 A 961 LEU THR ILE ASP PHE GLU LYS ASP ALA LYS LEU THR THR SEQRES 40 A 961 ASN GLU GLY VAL THR MET PRO GLU TYR PHE ASN LYS TRP SEQRES 41 A 961 ILE ILE ALA PRO MET PHE ASN ALA LYS LEU ARG ILE LYS SEQRES 42 A 961 HIS GLU GLU ILE ALA GLN ARG GLN SER ASP ASP PRO MET SEQRES 43 A 961 VAL LYS ARG THR LEU SER PRO ILE THR ALA ASP PRO ILE SEQRES 44 A 961 GLU LEU GLN ARG LEU THR LEU ALA ARG PHE TYR ASP ILE SEQRES 45 A 961 ARG PRO ALA LEU ARG GLY GLN ALA LEU SER ARG GLN GLN SEQRES 46 A 961 ALA GLN SER THR TYR ASP GLU GLU ILE SER LYS ARG GLN SEQRES 47 A 961 ASP TYR ALA GLU ILE LEU LYS ARG ARG GLY ILE VAL GLN SEQRES 48 A 961 ILE PRO LYS LYS PRO CYS PRO THR VAL THR ALA GLN TYR SEQRES 49 A 961 THR LEU GLU ARG TYR ALA LEU PHE ILE ILE SER ILE LEU SEQRES 50 A 961 GLN GLN HIS VAL VAL ARG ASP CYS ASP GLU GLU ALA VAL SEQRES 51 A 961 TYR GLU HIS PRO LYS ALA ASP HIS GLU LEU GLU ILE PHE SEQRES 52 A 961 GLY GLU SER ILE VAL ASP ILE SER GLN VAL ILE ILE LEU SEQRES 53 A 961 ALA PHE ASP LEU ILE PHE GLU ARG ARG ARG ARG VAL ARG SEQRES 54 A 961 ASP VAL TYR GLU SER ARG HIS ILE ILE ALA ARG ILE ARG SEQRES 55 A 961 ARG MET ARG GLY LYS GLU ARG LEU ASN VAL ILE ALA GLU SEQRES 56 A 961 PHE PHE PRO THR TYR GLY GLY LEU LEU ASN GLY LEU ASN SEQRES 57 A 961 SER ALA THR VAL VAL GLN ASN ILE MET TYR LEU ASN PHE SEQRES 58 A 961 LEU PRO LEU TYR PHE LEU VAL GLY ASP ASN MET ILE TYR SEQRES 59 A 961 SER HIS ARG GLN TRP SER ILE PRO LEU LEU LEU TYR THR SEQRES 60 A 961 HIS GLU VAL MET VAL VAL PRO LEU GLU VAL GLY SER TYR SEQRES 61 A 961 ASN ASP ARG CYS GLY LEU ILE ALA TYR LEU GLU TYR MET SEQRES 62 A 961 VAL PHE PHE PRO SER LYS ALA ILE ARG PHE SER LYS LEU SEQRES 63 A 961 ASN GLU ALA GLN PRO LYS ILE ALA ARG GLU MET LEU LYS SEQRES 64 A 961 TYR TYR ALA ASN THR THR VAL TYR ASP GLY GLY VAL ASN SEQRES 65 A 961 TYR ASN VAL VAL THR THR LYS GLN LEU LEU TYR GLU THR SEQRES 66 A 961 TYR LEU ALA SER LEU CYS GLY GLY ILE SER ASP GLY ILE SEQRES 67 A 961 VAL TRP TYR LEU PRO ILE THR HIS PRO ASN LYS CYS ILE SEQRES 68 A 961 VAL ALA ILE GLU VAL SER ASP GLU ARG VAL PRO ALA SER SEQRES 69 A 961 ILE ARG ALA GLY ARG ILE ARG LEU ARG PHE PRO LEU SER SEQRES 70 A 961 ALA ARG HIS LEU LYS GLY VAL VAL ILE ILE GLN ILE ASP SEQRES 71 A 961 GLU GLU GLY GLU PHE THR VAL TYR SER GLU GLY ILE VAL SEQRES 72 A 961 SER HIS ARG VAL CYS LYS LYS ASN LEU LEU LYS TYR MET SEQRES 73 A 961 CYS ASP ILE ILE LEU LEU LYS PHE SER GLY HIS VAL PHE SEQRES 74 A 961 GLY ASN ASP GLU MET LEU THR LYS LEU LEU ASN VAL HET ZN A1001 1 HETNAM ZN ZINC ION FORMUL 2 ZN ZN 2+ HELIX 1 1 VAL A 40 ILE A 43 5 4 HELIX 2 2 SER A 55 ALA A 59 5 5 HELIX 3 3 ARG A 74 GLU A 85 1 12 HELIX 4 4 GLN A 103 LYS A 110 1 8 HELIX 5 5 LYS A 144 MET A 148 5 5 HELIX 6 6 ASP A 157 GLY A 161 5 5 HELIX 7 7 LEU A 163 THR A 165 5 3 HELIX 8 8 ARG A 166 ILE A 176 1 11 HELIX 9 9 ASN A 412 PHE A 416 5 5 HELIX 10 10 ASP A 461 GLY A 476 1 16 HELIX 11 11 MET A 484 LEU A 488 5 5 HELIX 12 12 ALA A 523 ASN A 527 5 5 HELIX 13 13 ASP A 557 GLN A 562 1 6 HELIX 14 14 THR A 589 LYS A 596 1 8 HELIX 15 15 ASP A 599 ARG A 607 1 9 HELIX 16 16 CYS A 617 GLN A 638 1 22 HELIX 17 17 GLN A 639 VAL A 641 5 3 HELIX 18 18 ASP A 669 PHE A 682 1 14 HELIX 19 19 ASP A 690 MET A 704 1 15 HELIX 20 20 ARG A 705 ILE A 713 1 9 HELIX 21 21 PHE A 717 ASN A 725 1 9 HELIX 22 22 VAL A 732 MET A 737 1 6 HELIX 23 23 TYR A 738 PHE A 741 5 4 HELIX 24 24 LEU A 742 LEU A 747 1 6 HELIX 25 25 LEU A 786 GLU A 791 1 6 HELIX 26 26 TYR A 792 PHE A 795 5 4 HELIX 27 27 SER A 798 SER A 804 1 7 HELIX 28 28 GLU A 808 ALA A 822 1 15 HELIX 29 29 ASN A 832 THR A 837 1 6 HELIX 30 30 LYS A 839 CYS A 851 1 13 HELIX 31 31 PRO A 882 LEU A 892 1 11 HELIX 32 32 SER A 897 ARG A 899 5 3 HELIX 33 33 GLU A 953 ASN A 960 1 8 SHEET 1 A 6 ALA A 130 LEU A 133 0 SHEET 2 A 6 CYS A 136 ILE A 140 -1 O VAL A 138 N HIS A 131 SHEET 3 A 6 PHE A 23 ASP A 26 -1 N ASP A 26 O VAL A 137 SHEET 4 A 6 GLU A 3 TYR A 9 1 N PRO A 7 O ILE A 25 SHEET 5 A 6 CYS A 937 LYS A 943 -1 O ASP A 938 N VAL A 8 SHEET 6 A 6 SER A 924 LYS A 930 -1 N CYS A 928 O ILE A 939 SHEET 1 B 2 SER A 33 VAL A 34 0 SHEET 2 B 2 ARG A 37 HIS A 38 -1 O ARG A 37 N VAL A 34 SHEET 1 C 2 PHE A 70 VAL A 71 0 SHEET 2 C 2 GLN A 116 PRO A 117 -1 O GLN A 116 N VAL A 71 SHEET 1 D 2 ARG A 87 VAL A 90 0 SHEET 2 D 2 LYS A 96 HIS A 99 -1 O HIS A 99 N ARG A 87 SHEET 1 E 4 SER A 149 TYR A 150 0 SHEET 2 E 4 GLY A 857 ILE A 864 -1 O VAL A 859 N SER A 149 SHEET 3 E 4 CYS A 870 ASP A 878 -1 O ILE A 874 N TRP A 860 SHEET 4 E 4 LEU A 901 ILE A 909 1 O ILE A 907 N SER A 877 SHEET 1 F 2 HIS A 180 GLU A 184 0 SHEET 2 F 2 TYR A 570 PRO A 574 -1 O ASP A 571 N GLN A 183 SHEET 1 G 4 GLY A 409 ARG A 410 0 SHEET 2 G 4 ALA A 186 THR A 188 -1 N THR A 188 O GLY A 409 SHEET 3 G 4 LYS A 423 GLU A 428 -1 O VAL A 425 N TYR A 187 SHEET 4 G 4 ARG A 531 GLU A 536 -1 O ARG A 531 N GLU A 428 SHEET 1 H 2 SER A 760 LEU A 765 0 SHEET 2 H 2 MET A 771 GLU A 776 -1 O LEU A 775 N ILE A 761 LINK SG CYS A 162 ZN ZN A1001 1555 1555 2.33 LINK NE2 HIS A 164 ZN ZN A1001 1555 1555 2.32 LINK SG CYS A 617 ZN ZN A1001 1555 1555 2.69 LINK SG CYS A 851 ZN ZN A1001 1555 1555 2.74 CISPEP 1 ARG A 11 GLY A 12 0 9.33 CISPEP 2 GLY A 35 GLY A 36 0 -2.55 CISPEP 3 ASN A 47 ALA A 48 0 1.56 CISPEP 4 ASN A 63 PRO A 64 0 -24.25 CISPEP 5 GLU A 491 GLY A 492 0 -1.73 CISPEP 6 LEU A 505 THR A 506 0 -8.80 CISPEP 7 ASN A 508 GLU A 509 0 -9.33 CISPEP 8 PRO A 545 MET A 546 0 2.81 CISPEP 9 GLN A 611 ILE A 612 0 -11.46 CISPEP 10 PHE A 663 GLY A 664 0 5.41 CISPEP 11 VAL A 777 GLY A 778 0 9.79 CISPEP 12 GLY A 778 SER A 779 0 1.65 CISPEP 13 CYS A 784 GLY A 785 0 -9.18 CISPEP 14 GLY A 852 GLY A 853 0 7.44 CISPEP 15 HIS A 866 PRO A 867 0 2.61 SITE 1 AC1 4 CYS A 162 HIS A 164 CYS A 617 CYS A 851 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000