data_3J9S # _entry.id 3J9S # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.296 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code RCSB RCSB160430 PDB 3J9S WWPDB D_1000160430 # _pdbx_database_related.db_name EMDB _pdbx_database_related.db_id EMD-6272 _pdbx_database_related.details . _pdbx_database_related.content_type 'associated EM volume' # _pdbx_database_status.entry_id 3J9S _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2015-02-19 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Grant, T.' 1 'Grigorieff, N.' 2 # _citation.id primary _citation.title 'Measuring the optimal exposure for single particle cryo-EM using a 2.6 angstrom reconstruction of rotavirus VP6.' _citation.journal_abbrev Elife _citation.journal_volume 4 _citation.page_first e06980 _citation.page_last e06980 _citation.year 2015 _citation.journal_id_ASTM ? _citation.country US _citation.journal_id_ISSN 2050-084X _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 26023829 _citation.pdbx_database_id_DOI 10.7554/eLife.06980 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Grant, T.' 1 primary 'Grigorieff, N.' 2 # _cell.entry_id 3J9S _cell.length_a 1.000 _cell.length_b 1.000 _cell.length_c 1.000 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3J9S _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Intermediate capsid protein VP6' 44905.676 1 ? ? ? ? 2 non-polymer syn 'ZINC ION' 65.409 1 ? ? ? ? 3 non-polymer syn 'CHLORIDE ION' 35.453 1 ? ? ? ? 4 non-polymer syn 'CALCIUM ION' 40.078 2 ? ? ? ? 5 water nat water 18.015 105 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Rotavirus VP6' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;(ACE)MDVLYSLSKTLKDARDKIVEGTLYSNVSDLIQQFNQMIITMNGNEFQTGGIGNLPIRNWNFDFGLLGTTLLNLDA NYVETARNTIDYFVDFVDNVCMDEMVRESQRNGIAPQSDSLIKLSGIKFKRINFDNSSEYIENWNLQNRRQRTGFTFHKP NIFPYSASFTLNRSQPAHDNLMGTMWLNAGSEIQVAGFDYSCAINAPANTQQFEHIVQLRRVLTTATITLLPDAERFSFP RVITSADGATTWYFNPVILRPNNVEIEFLLNGQIINTYQARFGTIIARNFDTIRLSFQLMRPPNMTPAVAALFPNAQPFE HHATVGLTLRIESAVCESVLADASETMLANVTSVRQEYAIPVGPVFPPGMNWTDLITNYSPSREDNLQRVFTVASIRSML VK ; _entity_poly.pdbx_seq_one_letter_code_can ;XMDVLYSLSKTLKDARDKIVEGTLYSNVSDLIQQFNQMIITMNGNEFQTGGIGNLPIRNWNFDFGLLGTTLLNLDANYVE TARNTIDYFVDFVDNVCMDEMVRESQRNGIAPQSDSLIKLSGIKFKRINFDNSSEYIENWNLQNRRQRTGFTFHKPNIFP YSASFTLNRSQPAHDNLMGTMWLNAGSEIQVAGFDYSCAINAPANTQQFEHIVQLRRVLTTATITLLPDAERFSFPRVIT SADGATTWYFNPVILRPNNVEIEFLLNGQIINTYQARFGTIIARNFDTIRLSFQLMRPPNMTPAVAALFPNAQPFEHHAT VGLTLRIESAVCESVLADASETMLANVTSVRQEYAIPVGPVFPPGMNWTDLITNYSPSREDNLQRVFTVASIRSMLVK ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ACE n 1 2 MET n 1 3 ASP n 1 4 VAL n 1 5 LEU n 1 6 TYR n 1 7 SER n 1 8 LEU n 1 9 SER n 1 10 LYS n 1 11 THR n 1 12 LEU n 1 13 LYS n 1 14 ASP n 1 15 ALA n 1 16 ARG n 1 17 ASP n 1 18 LYS n 1 19 ILE n 1 20 VAL n 1 21 GLU n 1 22 GLY n 1 23 THR n 1 24 LEU n 1 25 TYR n 1 26 SER n 1 27 ASN n 1 28 VAL n 1 29 SER n 1 30 ASP n 1 31 LEU n 1 32 ILE n 1 33 GLN n 1 34 GLN n 1 35 PHE n 1 36 ASN n 1 37 GLN n 1 38 MET n 1 39 ILE n 1 40 ILE n 1 41 THR n 1 42 MET n 1 43 ASN n 1 44 GLY n 1 45 ASN n 1 46 GLU n 1 47 PHE n 1 48 GLN n 1 49 THR n 1 50 GLY n 1 51 GLY n 1 52 ILE n 1 53 GLY n 1 54 ASN n 1 55 LEU n 1 56 PRO n 1 57 ILE n 1 58 ARG n 1 59 ASN n 1 60 TRP n 1 61 ASN n 1 62 PHE n 1 63 ASP n 1 64 PHE n 1 65 GLY n 1 66 LEU n 1 67 LEU n 1 68 GLY n 1 69 THR n 1 70 THR n 1 71 LEU n 1 72 LEU n 1 73 ASN n 1 74 LEU n 1 75 ASP n 1 76 ALA n 1 77 ASN n 1 78 TYR n 1 79 VAL n 1 80 GLU n 1 81 THR n 1 82 ALA n 1 83 ARG n 1 84 ASN n 1 85 THR n 1 86 ILE n 1 87 ASP n 1 88 TYR n 1 89 PHE n 1 90 VAL n 1 91 ASP n 1 92 PHE n 1 93 VAL n 1 94 ASP n 1 95 ASN n 1 96 VAL n 1 97 CYS n 1 98 MET n 1 99 ASP n 1 100 GLU n 1 101 MET n 1 102 VAL n 1 103 ARG n 1 104 GLU n 1 105 SER n 1 106 GLN n 1 107 ARG n 1 108 ASN n 1 109 GLY n 1 110 ILE n 1 111 ALA n 1 112 PRO n 1 113 GLN n 1 114 SER n 1 115 ASP n 1 116 SER n 1 117 LEU n 1 118 ILE n 1 119 LYS n 1 120 LEU n 1 121 SER n 1 122 GLY n 1 123 ILE n 1 124 LYS n 1 125 PHE n 1 126 LYS n 1 127 ARG n 1 128 ILE n 1 129 ASN n 1 130 PHE n 1 131 ASP n 1 132 ASN n 1 133 SER n 1 134 SER n 1 135 GLU n 1 136 TYR n 1 137 ILE n 1 138 GLU n 1 139 ASN n 1 140 TRP n 1 141 ASN n 1 142 LEU n 1 143 GLN n 1 144 ASN n 1 145 ARG n 1 146 ARG n 1 147 GLN n 1 148 ARG n 1 149 THR n 1 150 GLY n 1 151 PHE n 1 152 THR n 1 153 PHE n 1 154 HIS n 1 155 LYS n 1 156 PRO n 1 157 ASN n 1 158 ILE n 1 159 PHE n 1 160 PRO n 1 161 TYR n 1 162 SER n 1 163 ALA n 1 164 SER n 1 165 PHE n 1 166 THR n 1 167 LEU n 1 168 ASN n 1 169 ARG n 1 170 SER n 1 171 GLN n 1 172 PRO n 1 173 ALA n 1 174 HIS n 1 175 ASP n 1 176 ASN n 1 177 LEU n 1 178 MET n 1 179 GLY n 1 180 THR n 1 181 MET n 1 182 TRP n 1 183 LEU n 1 184 ASN n 1 185 ALA n 1 186 GLY n 1 187 SER n 1 188 GLU n 1 189 ILE n 1 190 GLN n 1 191 VAL n 1 192 ALA n 1 193 GLY n 1 194 PHE n 1 195 ASP n 1 196 TYR n 1 197 SER n 1 198 CYS n 1 199 ALA n 1 200 ILE n 1 201 ASN n 1 202 ALA n 1 203 PRO n 1 204 ALA n 1 205 ASN n 1 206 THR n 1 207 GLN n 1 208 GLN n 1 209 PHE n 1 210 GLU n 1 211 HIS n 1 212 ILE n 1 213 VAL n 1 214 GLN n 1 215 LEU n 1 216 ARG n 1 217 ARG n 1 218 VAL n 1 219 LEU n 1 220 THR n 1 221 THR n 1 222 ALA n 1 223 THR n 1 224 ILE n 1 225 THR n 1 226 LEU n 1 227 LEU n 1 228 PRO n 1 229 ASP n 1 230 ALA n 1 231 GLU n 1 232 ARG n 1 233 PHE n 1 234 SER n 1 235 PHE n 1 236 PRO n 1 237 ARG n 1 238 VAL n 1 239 ILE n 1 240 THR n 1 241 SER n 1 242 ALA n 1 243 ASP n 1 244 GLY n 1 245 ALA n 1 246 THR n 1 247 THR n 1 248 TRP n 1 249 TYR n 1 250 PHE n 1 251 ASN n 1 252 PRO n 1 253 VAL n 1 254 ILE n 1 255 LEU n 1 256 ARG n 1 257 PRO n 1 258 ASN n 1 259 ASN n 1 260 VAL n 1 261 GLU n 1 262 ILE n 1 263 GLU n 1 264 PHE n 1 265 LEU n 1 266 LEU n 1 267 ASN n 1 268 GLY n 1 269 GLN n 1 270 ILE n 1 271 ILE n 1 272 ASN n 1 273 THR n 1 274 TYR n 1 275 GLN n 1 276 ALA n 1 277 ARG n 1 278 PHE n 1 279 GLY n 1 280 THR n 1 281 ILE n 1 282 ILE n 1 283 ALA n 1 284 ARG n 1 285 ASN n 1 286 PHE n 1 287 ASP n 1 288 THR n 1 289 ILE n 1 290 ARG n 1 291 LEU n 1 292 SER n 1 293 PHE n 1 294 GLN n 1 295 LEU n 1 296 MET n 1 297 ARG n 1 298 PRO n 1 299 PRO n 1 300 ASN n 1 301 MET n 1 302 THR n 1 303 PRO n 1 304 ALA n 1 305 VAL n 1 306 ALA n 1 307 ALA n 1 308 LEU n 1 309 PHE n 1 310 PRO n 1 311 ASN n 1 312 ALA n 1 313 GLN n 1 314 PRO n 1 315 PHE n 1 316 GLU n 1 317 HIS n 1 318 HIS n 1 319 ALA n 1 320 THR n 1 321 VAL n 1 322 GLY n 1 323 LEU n 1 324 THR n 1 325 LEU n 1 326 ARG n 1 327 ILE n 1 328 GLU n 1 329 SER n 1 330 ALA n 1 331 VAL n 1 332 CYS n 1 333 GLU n 1 334 SER n 1 335 VAL n 1 336 LEU n 1 337 ALA n 1 338 ASP n 1 339 ALA n 1 340 SER n 1 341 GLU n 1 342 THR n 1 343 MET n 1 344 LEU n 1 345 ALA n 1 346 ASN n 1 347 VAL n 1 348 THR n 1 349 SER n 1 350 VAL n 1 351 ARG n 1 352 GLN n 1 353 GLU n 1 354 TYR n 1 355 ALA n 1 356 ILE n 1 357 PRO n 1 358 VAL n 1 359 GLY n 1 360 PRO n 1 361 VAL n 1 362 PHE n 1 363 PRO n 1 364 PRO n 1 365 GLY n 1 366 MET n 1 367 ASN n 1 368 TRP n 1 369 THR n 1 370 ASP n 1 371 LEU n 1 372 ILE n 1 373 THR n 1 374 ASN n 1 375 TYR n 1 376 SER n 1 377 PRO n 1 378 SER n 1 379 ARG n 1 380 GLU n 1 381 ASP n 1 382 ASN n 1 383 LEU n 1 384 GLN n 1 385 ARG n 1 386 VAL n 1 387 PHE n 1 388 THR n 1 389 VAL n 1 390 ALA n 1 391 SER n 1 392 ILE n 1 393 ARG n 1 394 SER n 1 395 MET n 1 396 LEU n 1 397 VAL n 1 398 LYS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Bovine rotavirus strain UK/G6' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 10934 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name 'green monkey' _entity_src_gen.pdbx_host_org_scientific_name 'Chlorocebus sabaeus' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 60711 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code VP6_ROTRF _struct_ref.pdbx_db_accession P04509 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MDVLYSLSKTLKDARDKIVEGTLYSNVSDLIQQFNQMIITMNGNEFQTGGIGNLPIRNWNFDFGLLGTTLLNLDANYVET ARNTIDYFVDFVDNVCMDEMVRESQRNGIAPQSDSLIKLSGIKFKRINFDNSSEYIENWNLQNRRQRTGFTFHKPNIFPY SASFTLNRSQPAHDNLMGTMWLNAGSEIQVAGFDYSCAINAPANTQQFEHIVQLRRVLTTATITLLPDAERFSFPRVITS ADGATTWYFNPVILRPNNVEIEFLLNGQIINTYQARFGTIIARNFDTIRLSFQLMRPPNMTPAVAALFPNAQPFEHHATV GLTLRIESAVCESVLADASETMLANVTSVRQEYAIPVGPVFPPGMNWTDLITNYSPSREDNLQRVFTVASIRSMLVK ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3J9S _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 2 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 398 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P04509 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 397 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 397 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 3J9S _struct_ref_seq_dif.mon_id ACE _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 1 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code P04509 _struct_ref_seq_dif.db_mon_id ? _struct_ref_seq_dif.pdbx_seq_db_seq_num ? _struct_ref_seq_dif.details ACETYLATION _struct_ref_seq_dif.pdbx_auth_seq_num 0 _struct_ref_seq_dif.pdbx_ordinal 1 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ACE non-polymer . 'ACETYL GROUP' ? 'C2 H4 O' 44.053 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CA non-polymer . 'CALCIUM ION' ? 'Ca 2' 40.078 CL non-polymer . 'CHLORIDE ION' ? 'Cl -1' 35.453 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 ZN non-polymer . 'ZINC ION' ? 'Zn 2' 65.409 # _exptl.entry_id 3J9S _exptl.method 'ELECTRON MICROSCOPY' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews ? _exptl_crystal.density_percent_sol ? _exptl_crystal.description ? # _diffrn.id 1 _diffrn.ambient_temp ? _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_monochromatic_or_laue_m_l ? _diffrn_radiation.pdbx_diffrn_protocol ? _diffrn_radiation.pdbx_scattering_type ? # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _refine_hist.pdbx_refine_id 'ELECTRON MICROSCOPY' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 3162 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 4 _refine_hist.number_atoms_solvent 105 _refine_hist.number_atoms_total 3271 _refine_hist.d_res_high . _refine_hist.d_res_low . # _struct.entry_id 3J9S _struct.title 'Single particle cryo-EM structure of rotavirus VP6 at 2.6 Angstrom resolution' _struct.pdbx_descriptor 'Intermediate capsid protein VP6' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3J9S _struct_keywords.pdbx_keywords 'VIRAL PROTEIN' _struct_keywords.text 'rotavirus, virus, VIRAL PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 4 ? F N N 5 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 MET A 2 ? ILE A 19 ? MET A 1 ILE A 18 1 ? 18 HELX_P HELX_P2 2 LEU A 24 ? ASN A 43 ? LEU A 23 ASN A 42 1 ? 20 HELX_P HELX_P3 3 ASP A 75 ? VAL A 102 ? ASP A 74 VAL A 101 1 ? 28 HELX_P HELX_P4 4 SER A 114 ? SER A 121 ? SER A 113 SER A 120 1 ? 8 HELX_P HELX_P5 5 ILE A 123 ? ASN A 129 ? ILE A 122 ASN A 128 5 ? 7 HELX_P HELX_P6 6 SER A 134 ? ARG A 145 ? SER A 133 ARG A 144 1 ? 12 HELX_P HELX_P7 7 ALA A 202 ? ALA A 204 ? ALA A 201 ALA A 203 5 ? 3 HELX_P HELX_P8 8 THR A 302 ? PHE A 309 ? THR A 301 PHE A 308 1 ? 8 HELX_P HELX_P9 9 THR A 342 ? TYR A 354 ? THR A 341 TYR A 353 1 ? 13 HELX_P HELX_P10 10 PRO A 363 ? MET A 366 ? PRO A 362 MET A 365 5 ? 4 HELX_P HELX_P11 11 ASN A 367 ? ASN A 374 ? ASN A 366 ASN A 373 1 ? 8 HELX_P HELX_P12 12 SER A 376 ? VAL A 397 ? SER A 375 VAL A 396 1 ? 22 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? A ACE 1 C ? ? ? 1_555 A MET 2 N ? ? A ACE 0 A MET 1 1_555 ? ? ? ? ? ? ? 1.312 ? metalc1 metalc ? ? A HIS 154 NE2 ? ? ? 1_555 B ZN . ZN ? ? A HIS 153 A ZN 501 1_555 ? ? ? ? ? ? ? 2.251 ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id GLN _struct_mon_prot_cis.label_seq_id 313 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id GLN _struct_mon_prot_cis.auth_seq_id 312 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 314 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 313 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle 5.26 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 2 ? B ? 3 ? C ? 8 ? D ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? parallel C 1 2 ? anti-parallel C 2 3 ? anti-parallel C 3 4 ? anti-parallel C 4 5 ? anti-parallel C 5 6 ? anti-parallel C 6 7 ? anti-parallel C 7 8 ? anti-parallel D 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 GLU A 46 ? THR A 49 ? GLU A 45 THR A 48 A 2 ARG A 58 ? ASN A 61 ? ARG A 57 ASN A 60 B 1 PHE A 151 ? HIS A 154 ? PHE A 150 HIS A 153 B 2 HIS A 318 ? CYS A 332 ? HIS A 317 CYS A 331 B 3 PRO A 252 ? ILE A 254 ? PRO A 251 ILE A 253 C 1 PHE A 159 ? ARG A 169 ? PHE A 158 ARG A 168 C 2 MET A 178 ? GLY A 186 ? MET A 177 GLY A 185 C 3 GLU A 188 ? ASP A 195 ? GLU A 187 ASP A 194 C 4 HIS A 318 ? CYS A 332 ? HIS A 317 CYS A 331 C 5 THR A 206 ? PRO A 228 ? THR A 205 PRO A 227 C 6 GLY A 279 ? MET A 296 ? GLY A 278 MET A 295 C 7 ASN A 258 ? LEU A 265 ? ASN A 257 LEU A 264 C 8 ILE A 270 ? GLN A 275 ? ILE A 269 GLN A 274 D 1 ARG A 237 ? THR A 240 ? ARG A 236 THR A 239 D 2 THR A 247 ? PHE A 250 ? THR A 246 PHE A 249 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N PHE A 47 ? N PHE A 46 O TRP A 60 ? O TRP A 59 B 1 2 N PHE A 151 ? N PHE A 150 O CYS A 332 ? O CYS A 331 B 2 3 O HIS A 318 ? O HIS A 317 N VAL A 253 ? N VAL A 252 C 1 2 N SER A 162 ? N SER A 161 O ASN A 184 ? O ASN A 183 C 2 3 N MET A 181 ? N MET A 180 O ALA A 192 ? O ALA A 191 C 3 4 N GLY A 193 ? N GLY A 192 O VAL A 321 ? O VAL A 320 C 4 5 O SER A 329 ? O SER A 328 N THR A 223 ? N THR A 222 C 5 6 N GLN A 207 ? N GLN A 206 O LEU A 295 ? O LEU A 294 C 6 7 O ASP A 287 ? O ASP A 286 N LEU A 265 ? N LEU A 264 C 7 8 N PHE A 264 ? N PHE A 263 O ILE A 271 ? O ILE A 270 D 1 2 N ARG A 237 ? N ARG A 236 O PHE A 250 ? O PHE A 249 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 2 'BINDING SITE FOR RESIDUE ZN A 501' AC2 Software ? ? ? ? 2 'BINDING SITE FOR RESIDUE CL A 502' AC3 Software ? ? ? ? 2 'BINDING SITE FOR RESIDUE CA A 504' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 2 HIS A 154 ? HIS A 153 . ? 1_555 ? 2 AC1 2 CL C . ? CL A 502 . ? 1_555 ? 3 AC2 2 LYS A 155 ? LYS A 154 . ? 1_555 ? 4 AC2 2 ZN B . ? ZN A 501 . ? 1_555 ? 5 AC3 2 VAL A 218 ? VAL A 217 . ? 1_555 ? 6 AC3 2 ASP A 287 ? ASP A 286 . ? 1_555 ? # _atom_sites.entry_id 3J9S _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CA CL H N O S ZN # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ACE 1 0 0 ACE ACE A . n A 1 2 MET 2 1 1 MET MET A . n A 1 3 ASP 3 2 2 ASP ASP A . n A 1 4 VAL 4 3 3 VAL VAL A . n A 1 5 LEU 5 4 4 LEU LEU A . n A 1 6 TYR 6 5 5 TYR TYR A . n A 1 7 SER 7 6 6 SER SER A . n A 1 8 LEU 8 7 7 LEU LEU A . n A 1 9 SER 9 8 8 SER SER A . n A 1 10 LYS 10 9 9 LYS LYS A . n A 1 11 THR 11 10 10 THR THR A . n A 1 12 LEU 12 11 11 LEU LEU A . n A 1 13 LYS 13 12 12 LYS LYS A . n A 1 14 ASP 14 13 13 ASP ASP A . n A 1 15 ALA 15 14 14 ALA ALA A . n A 1 16 ARG 16 15 15 ARG ARG A . n A 1 17 ASP 17 16 16 ASP ASP A . n A 1 18 LYS 18 17 17 LYS LYS A . n A 1 19 ILE 19 18 18 ILE ILE A . n A 1 20 VAL 20 19 19 VAL VAL A . n A 1 21 GLU 21 20 20 GLU GLU A . n A 1 22 GLY 22 21 21 GLY GLY A . n A 1 23 THR 23 22 22 THR THR A . n A 1 24 LEU 24 23 23 LEU LEU A . n A 1 25 TYR 25 24 24 TYR TYR A . n A 1 26 SER 26 25 25 SER SER A . n A 1 27 ASN 27 26 26 ASN ASN A . n A 1 28 VAL 28 27 27 VAL VAL A . n A 1 29 SER 29 28 28 SER SER A . n A 1 30 ASP 30 29 29 ASP ASP A . n A 1 31 LEU 31 30 30 LEU LEU A . n A 1 32 ILE 32 31 31 ILE ILE A . n A 1 33 GLN 33 32 32 GLN GLN A . n A 1 34 GLN 34 33 33 GLN GLN A . n A 1 35 PHE 35 34 34 PHE PHE A . n A 1 36 ASN 36 35 35 ASN ASN A . n A 1 37 GLN 37 36 36 GLN GLN A . n A 1 38 MET 38 37 37 MET MET A . n A 1 39 ILE 39 38 38 ILE ILE A . n A 1 40 ILE 40 39 39 ILE ILE A . n A 1 41 THR 41 40 40 THR THR A . n A 1 42 MET 42 41 41 MET MET A . n A 1 43 ASN 43 42 42 ASN ASN A . n A 1 44 GLY 44 43 43 GLY GLY A . n A 1 45 ASN 45 44 44 ASN ASN A . n A 1 46 GLU 46 45 45 GLU GLU A . n A 1 47 PHE 47 46 46 PHE PHE A . n A 1 48 GLN 48 47 47 GLN GLN A . n A 1 49 THR 49 48 48 THR THR A . n A 1 50 GLY 50 49 49 GLY GLY A . n A 1 51 GLY 51 50 50 GLY GLY A . n A 1 52 ILE 52 51 51 ILE ILE A . n A 1 53 GLY 53 52 52 GLY GLY A . n A 1 54 ASN 54 53 53 ASN ASN A . n A 1 55 LEU 55 54 54 LEU LEU A . n A 1 56 PRO 56 55 55 PRO PRO A . n A 1 57 ILE 57 56 56 ILE ILE A . n A 1 58 ARG 58 57 57 ARG ARG A . n A 1 59 ASN 59 58 58 ASN ASN A . n A 1 60 TRP 60 59 59 TRP TRP A . n A 1 61 ASN 61 60 60 ASN ASN A . n A 1 62 PHE 62 61 61 PHE PHE A . n A 1 63 ASP 63 62 62 ASP ASP A . n A 1 64 PHE 64 63 63 PHE PHE A . n A 1 65 GLY 65 64 64 GLY GLY A . n A 1 66 LEU 66 65 65 LEU LEU A . n A 1 67 LEU 67 66 66 LEU LEU A . n A 1 68 GLY 68 67 67 GLY GLY A . n A 1 69 THR 69 68 68 THR THR A . n A 1 70 THR 70 69 69 THR THR A . n A 1 71 LEU 71 70 70 LEU LEU A . n A 1 72 LEU 72 71 71 LEU LEU A . n A 1 73 ASN 73 72 72 ASN ASN A . n A 1 74 LEU 74 73 73 LEU LEU A . n A 1 75 ASP 75 74 74 ASP ASP A . n A 1 76 ALA 76 75 75 ALA ALA A . n A 1 77 ASN 77 76 76 ASN ASN A . n A 1 78 TYR 78 77 77 TYR TYR A . n A 1 79 VAL 79 78 78 VAL VAL A . n A 1 80 GLU 80 79 79 GLU GLU A . n A 1 81 THR 81 80 80 THR THR A . n A 1 82 ALA 82 81 81 ALA ALA A . n A 1 83 ARG 83 82 82 ARG ARG A . n A 1 84 ASN 84 83 83 ASN ASN A . n A 1 85 THR 85 84 84 THR THR A . n A 1 86 ILE 86 85 85 ILE ILE A . n A 1 87 ASP 87 86 86 ASP ASP A . n A 1 88 TYR 88 87 87 TYR TYR A . n A 1 89 PHE 89 88 88 PHE PHE A . n A 1 90 VAL 90 89 89 VAL VAL A . n A 1 91 ASP 91 90 90 ASP ASP A . n A 1 92 PHE 92 91 91 PHE PHE A . n A 1 93 VAL 93 92 92 VAL VAL A . n A 1 94 ASP 94 93 93 ASP ASP A . n A 1 95 ASN 95 94 94 ASN ASN A . n A 1 96 VAL 96 95 95 VAL VAL A . n A 1 97 CYS 97 96 96 CYS CYS A . n A 1 98 MET 98 97 97 MET MET A . n A 1 99 ASP 99 98 98 ASP ASP A . n A 1 100 GLU 100 99 99 GLU GLU A . n A 1 101 MET 101 100 100 MET MET A . n A 1 102 VAL 102 101 101 VAL VAL A . n A 1 103 ARG 103 102 102 ARG ARG A . n A 1 104 GLU 104 103 103 GLU GLU A . n A 1 105 SER 105 104 104 SER SER A . n A 1 106 GLN 106 105 105 GLN GLN A . n A 1 107 ARG 107 106 106 ARG ARG A . n A 1 108 ASN 108 107 107 ASN ASN A . n A 1 109 GLY 109 108 108 GLY GLY A . n A 1 110 ILE 110 109 109 ILE ILE A . n A 1 111 ALA 111 110 110 ALA ALA A . n A 1 112 PRO 112 111 111 PRO PRO A . n A 1 113 GLN 113 112 112 GLN GLN A . n A 1 114 SER 114 113 113 SER SER A . n A 1 115 ASP 115 114 114 ASP ASP A . n A 1 116 SER 116 115 115 SER SER A . n A 1 117 LEU 117 116 116 LEU LEU A . n A 1 118 ILE 118 117 117 ILE ILE A . n A 1 119 LYS 119 118 118 LYS LYS A . n A 1 120 LEU 120 119 119 LEU LEU A . n A 1 121 SER 121 120 120 SER SER A . n A 1 122 GLY 122 121 121 GLY GLY A . n A 1 123 ILE 123 122 122 ILE ILE A . n A 1 124 LYS 124 123 123 LYS LYS A . n A 1 125 PHE 125 124 124 PHE PHE A . n A 1 126 LYS 126 125 125 LYS LYS A . n A 1 127 ARG 127 126 126 ARG ARG A . n A 1 128 ILE 128 127 127 ILE ILE A . n A 1 129 ASN 129 128 128 ASN ASN A . n A 1 130 PHE 130 129 129 PHE PHE A . n A 1 131 ASP 131 130 130 ASP ASP A . n A 1 132 ASN 132 131 131 ASN ASN A . n A 1 133 SER 133 132 132 SER SER A . n A 1 134 SER 134 133 133 SER SER A . n A 1 135 GLU 135 134 134 GLU GLU A . n A 1 136 TYR 136 135 135 TYR TYR A . n A 1 137 ILE 137 136 136 ILE ILE A . n A 1 138 GLU 138 137 137 GLU GLU A . n A 1 139 ASN 139 138 138 ASN ASN A . n A 1 140 TRP 140 139 139 TRP TRP A . n A 1 141 ASN 141 140 140 ASN ASN A . n A 1 142 LEU 142 141 141 LEU LEU A . n A 1 143 GLN 143 142 142 GLN GLN A . n A 1 144 ASN 144 143 143 ASN ASN A . n A 1 145 ARG 145 144 144 ARG ARG A . n A 1 146 ARG 146 145 145 ARG ARG A . n A 1 147 GLN 147 146 146 GLN GLN A . n A 1 148 ARG 148 147 147 ARG ARG A . n A 1 149 THR 149 148 148 THR THR A . n A 1 150 GLY 150 149 149 GLY GLY A . n A 1 151 PHE 151 150 150 PHE PHE A . n A 1 152 THR 152 151 151 THR THR A . n A 1 153 PHE 153 152 152 PHE PHE A . n A 1 154 HIS 154 153 153 HIS HIS A . n A 1 155 LYS 155 154 154 LYS LYS A . n A 1 156 PRO 156 155 155 PRO PRO A . n A 1 157 ASN 157 156 156 ASN ASN A . n A 1 158 ILE 158 157 157 ILE ILE A . n A 1 159 PHE 159 158 158 PHE PHE A . n A 1 160 PRO 160 159 159 PRO PRO A . n A 1 161 TYR 161 160 160 TYR TYR A . n A 1 162 SER 162 161 161 SER SER A . n A 1 163 ALA 163 162 162 ALA ALA A . n A 1 164 SER 164 163 163 SER SER A . n A 1 165 PHE 165 164 164 PHE PHE A . n A 1 166 THR 166 165 165 THR THR A . n A 1 167 LEU 167 166 166 LEU LEU A . n A 1 168 ASN 168 167 167 ASN ASN A . n A 1 169 ARG 169 168 168 ARG ARG A . n A 1 170 SER 170 169 169 SER SER A . n A 1 171 GLN 171 170 170 GLN GLN A . n A 1 172 PRO 172 171 171 PRO PRO A . n A 1 173 ALA 173 172 172 ALA ALA A . n A 1 174 HIS 174 173 173 HIS HIS A . n A 1 175 ASP 175 174 174 ASP ASP A . n A 1 176 ASN 176 175 175 ASN ASN A . n A 1 177 LEU 177 176 176 LEU LEU A . n A 1 178 MET 178 177 177 MET MET A . n A 1 179 GLY 179 178 178 GLY GLY A . n A 1 180 THR 180 179 179 THR THR A . n A 1 181 MET 181 180 180 MET MET A . n A 1 182 TRP 182 181 181 TRP TRP A . n A 1 183 LEU 183 182 182 LEU LEU A . n A 1 184 ASN 184 183 183 ASN ASN A . n A 1 185 ALA 185 184 184 ALA ALA A . n A 1 186 GLY 186 185 185 GLY GLY A . n A 1 187 SER 187 186 186 SER SER A . n A 1 188 GLU 188 187 187 GLU GLU A . n A 1 189 ILE 189 188 188 ILE ILE A . n A 1 190 GLN 190 189 189 GLN GLN A . n A 1 191 VAL 191 190 190 VAL VAL A . n A 1 192 ALA 192 191 191 ALA ALA A . n A 1 193 GLY 193 192 192 GLY GLY A . n A 1 194 PHE 194 193 193 PHE PHE A . n A 1 195 ASP 195 194 194 ASP ASP A . n A 1 196 TYR 196 195 195 TYR TYR A . n A 1 197 SER 197 196 196 SER SER A . n A 1 198 CYS 198 197 197 CYS CYS A . n A 1 199 ALA 199 198 198 ALA ALA A . n A 1 200 ILE 200 199 199 ILE ILE A . n A 1 201 ASN 201 200 200 ASN ASN A . n A 1 202 ALA 202 201 201 ALA ALA A . n A 1 203 PRO 203 202 202 PRO PRO A . n A 1 204 ALA 204 203 203 ALA ALA A . n A 1 205 ASN 205 204 204 ASN ASN A . n A 1 206 THR 206 205 205 THR THR A . n A 1 207 GLN 207 206 206 GLN GLN A . n A 1 208 GLN 208 207 207 GLN GLN A . n A 1 209 PHE 209 208 208 PHE PHE A . n A 1 210 GLU 210 209 209 GLU GLU A . n A 1 211 HIS 211 210 210 HIS HIS A . n A 1 212 ILE 212 211 211 ILE ILE A . n A 1 213 VAL 213 212 212 VAL VAL A . n A 1 214 GLN 214 213 213 GLN GLN A . n A 1 215 LEU 215 214 214 LEU LEU A . n A 1 216 ARG 216 215 215 ARG ARG A . n A 1 217 ARG 217 216 216 ARG ARG A . n A 1 218 VAL 218 217 217 VAL VAL A . n A 1 219 LEU 219 218 218 LEU LEU A . n A 1 220 THR 220 219 219 THR THR A . n A 1 221 THR 221 220 220 THR THR A . n A 1 222 ALA 222 221 221 ALA ALA A . n A 1 223 THR 223 222 222 THR THR A . n A 1 224 ILE 224 223 223 ILE ILE A . n A 1 225 THR 225 224 224 THR THR A . n A 1 226 LEU 226 225 225 LEU LEU A . n A 1 227 LEU 227 226 226 LEU LEU A . n A 1 228 PRO 228 227 227 PRO PRO A . n A 1 229 ASP 229 228 228 ASP ASP A . n A 1 230 ALA 230 229 229 ALA ALA A . n A 1 231 GLU 231 230 230 GLU GLU A . n A 1 232 ARG 232 231 231 ARG ARG A . n A 1 233 PHE 233 232 232 PHE PHE A . n A 1 234 SER 234 233 233 SER SER A . n A 1 235 PHE 235 234 234 PHE PHE A . n A 1 236 PRO 236 235 235 PRO PRO A . n A 1 237 ARG 237 236 236 ARG ARG A . n A 1 238 VAL 238 237 237 VAL VAL A . n A 1 239 ILE 239 238 238 ILE ILE A . n A 1 240 THR 240 239 239 THR THR A . n A 1 241 SER 241 240 240 SER SER A . n A 1 242 ALA 242 241 241 ALA ALA A . n A 1 243 ASP 243 242 242 ASP ASP A . n A 1 244 GLY 244 243 243 GLY GLY A . n A 1 245 ALA 245 244 244 ALA ALA A . n A 1 246 THR 246 245 245 THR THR A . n A 1 247 THR 247 246 246 THR THR A . n A 1 248 TRP 248 247 247 TRP TRP A . n A 1 249 TYR 249 248 248 TYR TYR A . n A 1 250 PHE 250 249 249 PHE PHE A . n A 1 251 ASN 251 250 250 ASN ASN A . n A 1 252 PRO 252 251 251 PRO PRO A . n A 1 253 VAL 253 252 252 VAL VAL A . n A 1 254 ILE 254 253 253 ILE ILE A . n A 1 255 LEU 255 254 254 LEU LEU A . n A 1 256 ARG 256 255 255 ARG ARG A . n A 1 257 PRO 257 256 256 PRO PRO A . n A 1 258 ASN 258 257 257 ASN ASN A . n A 1 259 ASN 259 258 258 ASN ASN A . n A 1 260 VAL 260 259 259 VAL VAL A . n A 1 261 GLU 261 260 260 GLU GLU A . n A 1 262 ILE 262 261 261 ILE ILE A . n A 1 263 GLU 263 262 262 GLU GLU A . n A 1 264 PHE 264 263 263 PHE PHE A . n A 1 265 LEU 265 264 264 LEU LEU A . n A 1 266 LEU 266 265 265 LEU LEU A . n A 1 267 ASN 267 266 266 ASN ASN A . n A 1 268 GLY 268 267 267 GLY GLY A . n A 1 269 GLN 269 268 268 GLN GLN A . n A 1 270 ILE 270 269 269 ILE ILE A . n A 1 271 ILE 271 270 270 ILE ILE A . n A 1 272 ASN 272 271 271 ASN ASN A . n A 1 273 THR 273 272 272 THR THR A . n A 1 274 TYR 274 273 273 TYR TYR A . n A 1 275 GLN 275 274 274 GLN GLN A . n A 1 276 ALA 276 275 275 ALA ALA A . n A 1 277 ARG 277 276 276 ARG ARG A . n A 1 278 PHE 278 277 277 PHE PHE A . n A 1 279 GLY 279 278 278 GLY GLY A . n A 1 280 THR 280 279 279 THR THR A . n A 1 281 ILE 281 280 280 ILE ILE A . n A 1 282 ILE 282 281 281 ILE ILE A . n A 1 283 ALA 283 282 282 ALA ALA A . n A 1 284 ARG 284 283 283 ARG ARG A . n A 1 285 ASN 285 284 284 ASN ASN A . n A 1 286 PHE 286 285 285 PHE PHE A . n A 1 287 ASP 287 286 286 ASP ASP A . n A 1 288 THR 288 287 287 THR THR A . n A 1 289 ILE 289 288 288 ILE ILE A . n A 1 290 ARG 290 289 289 ARG ARG A . n A 1 291 LEU 291 290 290 LEU LEU A . n A 1 292 SER 292 291 291 SER SER A . n A 1 293 PHE 293 292 292 PHE PHE A . n A 1 294 GLN 294 293 293 GLN GLN A . n A 1 295 LEU 295 294 294 LEU LEU A . n A 1 296 MET 296 295 295 MET MET A . n A 1 297 ARG 297 296 296 ARG ARG A . n A 1 298 PRO 298 297 297 PRO PRO A . n A 1 299 PRO 299 298 298 PRO PRO A . n A 1 300 ASN 300 299 299 ASN ASN A . n A 1 301 MET 301 300 300 MET MET A . n A 1 302 THR 302 301 301 THR THR A . n A 1 303 PRO 303 302 302 PRO PRO A . n A 1 304 ALA 304 303 303 ALA ALA A . n A 1 305 VAL 305 304 304 VAL VAL A . n A 1 306 ALA 306 305 305 ALA ALA A . n A 1 307 ALA 307 306 306 ALA ALA A . n A 1 308 LEU 308 307 307 LEU LEU A . n A 1 309 PHE 309 308 308 PHE PHE A . n A 1 310 PRO 310 309 309 PRO PRO A . n A 1 311 ASN 311 310 310 ASN ASN A . n A 1 312 ALA 312 311 311 ALA ALA A . n A 1 313 GLN 313 312 312 GLN GLN A . n A 1 314 PRO 314 313 313 PRO PRO A . n A 1 315 PHE 315 314 314 PHE PHE A . n A 1 316 GLU 316 315 315 GLU GLU A . n A 1 317 HIS 317 316 316 HIS HIS A . n A 1 318 HIS 318 317 317 HIS HIS A . n A 1 319 ALA 319 318 318 ALA ALA A . n A 1 320 THR 320 319 319 THR THR A . n A 1 321 VAL 321 320 320 VAL VAL A . n A 1 322 GLY 322 321 321 GLY GLY A . n A 1 323 LEU 323 322 322 LEU LEU A . n A 1 324 THR 324 323 323 THR THR A . n A 1 325 LEU 325 324 324 LEU LEU A . n A 1 326 ARG 326 325 325 ARG ARG A . n A 1 327 ILE 327 326 326 ILE ILE A . n A 1 328 GLU 328 327 327 GLU GLU A . n A 1 329 SER 329 328 328 SER SER A . n A 1 330 ALA 330 329 329 ALA ALA A . n A 1 331 VAL 331 330 330 VAL VAL A . n A 1 332 CYS 332 331 331 CYS CYS A . n A 1 333 GLU 333 332 332 GLU GLU A . n A 1 334 SER 334 333 333 SER SER A . n A 1 335 VAL 335 334 334 VAL VAL A . n A 1 336 LEU 336 335 335 LEU LEU A . n A 1 337 ALA 337 336 336 ALA ALA A . n A 1 338 ASP 338 337 337 ASP ASP A . n A 1 339 ALA 339 338 338 ALA ALA A . n A 1 340 SER 340 339 339 SER SER A . n A 1 341 GLU 341 340 340 GLU GLU A . n A 1 342 THR 342 341 341 THR THR A . n A 1 343 MET 343 342 342 MET MET A . n A 1 344 LEU 344 343 343 LEU LEU A . n A 1 345 ALA 345 344 344 ALA ALA A . n A 1 346 ASN 346 345 345 ASN ASN A . n A 1 347 VAL 347 346 346 VAL VAL A . n A 1 348 THR 348 347 347 THR THR A . n A 1 349 SER 349 348 348 SER SER A . n A 1 350 VAL 350 349 349 VAL VAL A . n A 1 351 ARG 351 350 350 ARG ARG A . n A 1 352 GLN 352 351 351 GLN GLN A . n A 1 353 GLU 353 352 352 GLU GLU A . n A 1 354 TYR 354 353 353 TYR TYR A . n A 1 355 ALA 355 354 354 ALA ALA A . n A 1 356 ILE 356 355 355 ILE ILE A . n A 1 357 PRO 357 356 356 PRO PRO A . n A 1 358 VAL 358 357 357 VAL VAL A . n A 1 359 GLY 359 358 358 GLY GLY A . n A 1 360 PRO 360 359 359 PRO PRO A . n A 1 361 VAL 361 360 360 VAL VAL A . n A 1 362 PHE 362 361 361 PHE PHE A . n A 1 363 PRO 363 362 362 PRO PRO A . n A 1 364 PRO 364 363 363 PRO PRO A . n A 1 365 GLY 365 364 364 GLY GLY A . n A 1 366 MET 366 365 365 MET MET A . n A 1 367 ASN 367 366 366 ASN ASN A . n A 1 368 TRP 368 367 367 TRP TRP A . n A 1 369 THR 369 368 368 THR THR A . n A 1 370 ASP 370 369 369 ASP ASP A . n A 1 371 LEU 371 370 370 LEU LEU A . n A 1 372 ILE 372 371 371 ILE ILE A . n A 1 373 THR 373 372 372 THR THR A . n A 1 374 ASN 374 373 373 ASN ASN A . n A 1 375 TYR 375 374 374 TYR TYR A . n A 1 376 SER 376 375 375 SER SER A . n A 1 377 PRO 377 376 376 PRO PRO A . n A 1 378 SER 378 377 377 SER SER A . n A 1 379 ARG 379 378 378 ARG ARG A . n A 1 380 GLU 380 379 379 GLU GLU A . n A 1 381 ASP 381 380 380 ASP ASP A . n A 1 382 ASN 382 381 381 ASN ASN A . n A 1 383 LEU 383 382 382 LEU LEU A . n A 1 384 GLN 384 383 383 GLN GLN A . n A 1 385 ARG 385 384 384 ARG ARG A . n A 1 386 VAL 386 385 385 VAL VAL A . n A 1 387 PHE 387 386 386 PHE PHE A . n A 1 388 THR 388 387 387 THR THR A . n A 1 389 VAL 389 388 388 VAL VAL A . n A 1 390 ALA 390 389 389 ALA ALA A . n A 1 391 SER 391 390 390 SER SER A . n A 1 392 ILE 392 391 391 ILE ILE A . n A 1 393 ARG 393 392 392 ARG ARG A . n A 1 394 SER 394 393 393 SER SER A . n A 1 395 MET 395 394 394 MET MET A . n A 1 396 LEU 396 395 395 LEU LEU A . n A 1 397 VAL 397 396 396 VAL VAL A . n A 1 398 LYS 398 397 397 LYS LYS A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN 1 501 501 ZN ZN A . C 3 CL 1 502 502 CL CL A . D 4 CA 1 503 503 CA CA A . E 4 CA 1 504 504 CA CA A . F 5 HOH 1 601 601 HOH HOH A . F 5 HOH 2 602 602 HOH HOH A . F 5 HOH 3 603 603 HOH HOH A . F 5 HOH 4 604 604 HOH HOH A . F 5 HOH 5 605 605 HOH HOH A . F 5 HOH 6 606 606 HOH HOH A . F 5 HOH 7 607 607 HOH HOH A . F 5 HOH 8 608 608 HOH HOH A . F 5 HOH 9 609 609 HOH HOH A . F 5 HOH 10 610 610 HOH HOH A . F 5 HOH 11 611 611 HOH HOH A . F 5 HOH 12 612 612 HOH HOH A . F 5 HOH 13 613 613 HOH HOH A . F 5 HOH 14 614 614 HOH HOH A . F 5 HOH 15 615 615 HOH HOH A . F 5 HOH 16 616 616 HOH HOH A . F 5 HOH 17 617 617 HOH HOH A . F 5 HOH 18 618 618 HOH HOH A . F 5 HOH 19 619 619 HOH HOH A . F 5 HOH 20 620 620 HOH HOH A . F 5 HOH 21 621 621 HOH HOH A . F 5 HOH 22 622 622 HOH HOH A . F 5 HOH 23 623 623 HOH HOH A . F 5 HOH 24 624 624 HOH HOH A . F 5 HOH 25 625 625 HOH HOH A . F 5 HOH 26 626 626 HOH HOH A . F 5 HOH 27 627 627 HOH HOH A . F 5 HOH 28 628 628 HOH HOH A . F 5 HOH 29 629 629 HOH HOH A . F 5 HOH 30 630 630 HOH HOH A . F 5 HOH 31 631 631 HOH HOH A . F 5 HOH 32 632 632 HOH HOH A . F 5 HOH 33 633 633 HOH HOH A . F 5 HOH 34 634 634 HOH HOH A . F 5 HOH 35 635 635 HOH HOH A . F 5 HOH 36 636 636 HOH HOH A . F 5 HOH 37 637 637 HOH HOH A . F 5 HOH 38 638 638 HOH HOH A . F 5 HOH 39 639 639 HOH HOH A . F 5 HOH 40 640 640 HOH HOH A . F 5 HOH 41 641 641 HOH HOH A . F 5 HOH 42 642 642 HOH HOH A . F 5 HOH 43 643 643 HOH HOH A . F 5 HOH 44 644 644 HOH HOH A . F 5 HOH 45 645 645 HOH HOH A . F 5 HOH 46 646 646 HOH HOH A . F 5 HOH 47 647 647 HOH HOH A . F 5 HOH 48 648 648 HOH HOH A . F 5 HOH 49 649 649 HOH HOH A . F 5 HOH 50 650 650 HOH HOH A . F 5 HOH 51 651 651 HOH HOH A . F 5 HOH 52 652 652 HOH HOH A . F 5 HOH 53 653 653 HOH HOH A . F 5 HOH 54 654 654 HOH HOH A . F 5 HOH 55 655 655 HOH HOH A . F 5 HOH 56 656 656 HOH HOH A . F 5 HOH 57 657 657 HOH HOH A . F 5 HOH 58 658 658 HOH HOH A . F 5 HOH 59 659 659 HOH HOH A . F 5 HOH 60 660 660 HOH HOH A . F 5 HOH 61 661 661 HOH HOH A . F 5 HOH 62 662 662 HOH HOH A . F 5 HOH 63 663 663 HOH HOH A . F 5 HOH 64 664 664 HOH HOH A . F 5 HOH 65 665 665 HOH HOH A . F 5 HOH 66 666 666 HOH HOH A . F 5 HOH 67 667 667 HOH HOH A . F 5 HOH 68 668 668 HOH HOH A . F 5 HOH 69 669 669 HOH HOH A . F 5 HOH 70 670 670 HOH HOH A . F 5 HOH 71 671 671 HOH HOH A . F 5 HOH 72 672 672 HOH HOH A . F 5 HOH 73 673 673 HOH HOH A . F 5 HOH 74 674 674 HOH HOH A . F 5 HOH 75 675 675 HOH HOH A . F 5 HOH 76 676 676 HOH HOH A . F 5 HOH 77 677 677 HOH HOH A . F 5 HOH 78 678 678 HOH HOH A . F 5 HOH 79 679 679 HOH HOH A . F 5 HOH 80 680 680 HOH HOH A . F 5 HOH 81 681 681 HOH HOH A . F 5 HOH 82 682 682 HOH HOH A . F 5 HOH 83 683 683 HOH HOH A . F 5 HOH 84 684 684 HOH HOH A . F 5 HOH 85 685 685 HOH HOH A . F 5 HOH 86 686 686 HOH HOH A . F 5 HOH 87 687 687 HOH HOH A . F 5 HOH 88 688 688 HOH HOH A . F 5 HOH 89 689 689 HOH HOH A . F 5 HOH 90 690 690 HOH HOH A . F 5 HOH 91 691 691 HOH HOH A . F 5 HOH 92 692 692 HOH HOH A . F 5 HOH 93 693 693 HOH HOH A . F 5 HOH 94 694 694 HOH HOH A . F 5 HOH 95 695 695 HOH HOH A . F 5 HOH 96 696 696 HOH HOH A . F 5 HOH 97 697 697 HOH HOH A . F 5 HOH 98 698 698 HOH HOH A . F 5 HOH 99 699 699 HOH HOH A . F 5 HOH 100 700 700 HOH HOH A . F 5 HOH 101 701 701 HOH HOH A . F 5 HOH 102 702 702 HOH HOH A . F 5 HOH 103 703 703 HOH HOH A . F 5 HOH 104 704 704 HOH HOH A . F 5 HOH 105 705 705 HOH HOH A . # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 'complete point assembly' ? 3-MERIC 3 2 'point asymmetric unit' ? monomeric 1 3 'point asymmetric unit, std point frame' ? monomeric 1 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 '(1-3)' A,B,C,D,E,F 2 1 A,B,C,D,E,F 3 P A,B,C,D,E,F # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] P 'transform to point frame' ? ? 0.48337256 0.87220232 -0.07492715 -2.86060 0.87310509 -0.48654142 -0.03106371 0.54497 -0.06354900 -0.05040393 -0.99670506 -1.63472 1 'point symmetry operation' ? ? 1.00000000 0.00000000 0.00000000 0.00000 0.00000000 1.00000000 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 0.00000 2 'point symmetry operation' ? ? -0.49394229 0.86797657 0.05135833 -1.03074 -0.85836722 -0.49618916 0.13039183 4.93395 0.13866050 0.02032173 0.99013145 -0.18379 3 'point symmetry operation' ? ? -0.49394228 -0.85836722 0.13866050 3.75150 0.86797658 -0.49618917 0.02032173 3.34657 0.05135833 0.13039183 0.99013145 -0.40843 # _pdbx_point_symmetry.entry_id 3J9S _pdbx_point_symmetry.Schoenflies_symbol C _pdbx_point_symmetry.circular_symmetry 3 _pdbx_point_symmetry.H-M_notation ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2015-03-11 2 'Structure model' 1 1 2015-06-10 3 'Structure model' 1 2 2015-07-01 4 'Structure model' 1 3 2015-09-02 5 'Structure model' 1 4 2018-07-18 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Derived calculations' 3 4 'Structure model' 'Database references' 4 5 'Structure model' 'Data collection' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 5 'Structure model' em_image_scans 2 5 'Structure model' em_software # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 5 'Structure model' '_em_software.image_processing_id' 2 5 'Structure model' '_em_software.name' # _em_3d_fitting.id 1 _em_3d_fitting.entry_id 3J9S _em_3d_fitting.ref_protocol 'FLEXIBLE FIT' _em_3d_fitting.ref_space REAL _em_3d_fitting.overall_b_value ? _em_3d_fitting.target_criteria ? _em_3d_fitting.details ;REFINEMENT PROTOCOL--flexible DETAILS--Model was refined by real space refinement using COOT and all restraints. ; _em_3d_fitting.method ? # _em_3d_fitting_list.3d_fitting_id 1 _em_3d_fitting_list.id 1 _em_3d_fitting_list.pdb_entry_id 1QHD _em_3d_fitting_list.pdb_chain_id A _em_3d_fitting_list.details ? # _em_3d_reconstruction.entry_id 3J9S _em_3d_reconstruction.id 1 _em_3d_reconstruction.resolution_method 'FSC 0.143 CUT-OFF' _em_3d_reconstruction.symmetry_type POINT _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.method 'projection matching' _em_3d_reconstruction.nominal_pixel_size 1.023 _em_3d_reconstruction.actual_pixel_size 1.023 _em_3d_reconstruction.resolution 2.6 _em_3d_reconstruction.magnification_calibration ? _em_3d_reconstruction.details ;Final map is a 13-fold average of VP6 trimers from the asymmetric unit of the reconstruction of the whole capsid. Data at resolutions higher than 15A were not used for alignments. ; _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.num_particles 4000 _em_3d_reconstruction.algorithm ? # _em_entity_assembly.id 1 _em_entity_assembly.name 'Bovine rotavirus VP6' _em_entity_assembly.type VIRUS _em_entity_assembly.parent_id 0 _em_entity_assembly.synonym ? _em_entity_assembly.details ? _em_entity_assembly.oligomeric_details ? # _em_imaging.entry_id 3J9S _em_imaging.id 1 _em_imaging.specimen_id 1 _em_imaging.date 2014-08-13 _em_imaging.temperature ? _em_imaging.microscope_model 'FEI TITAN KRIOS' _em_imaging.nominal_defocus_max 2000 _em_imaging.nominal_defocus_min 400 _em_imaging.tilt_angle_max ? _em_imaging.tilt_angle_min ? _em_imaging.nominal_cs 2.7 _em_imaging.mode 'BRIGHT FIELD' _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.nominal_magnification 29000 _em_imaging.calibrated_magnification ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.accelerating_voltage 300 _em_imaging.details ? _em_imaging.citation_id ? _em_imaging.detector_distance ? _em_imaging.recording_temperature_maximum ? _em_imaging.recording_temperature_minimum ? _em_imaging.specimen_holder_model ? _em_imaging.specimen_holder_type 'FEI TITAN KRIOS AUTOGRID HOLDER' _em_imaging.astigmatism ? _em_imaging.electron_beam_tilt_params ? # _em_sample_support.id 1 _em_sample_support.specimen_id 1 _em_sample_support.details 'C-Flat 1.2/1.3' _em_sample_support.film_material ? _em_sample_support.grid_material ? _em_sample_support.grid_mesh_size ? _em_sample_support.grid_type ? _em_sample_support.method ? # _em_vitrification.entry_id 3J9S _em_vitrification.id 1 _em_vitrification.citation_id ? _em_vitrification.details 'Blot for 4-6 seconds before plunging into liquid ethane (FEI VITROBOT MARK II).' _em_vitrification.cryogen_name ETHANE _em_vitrification.humidity 80 _em_vitrification.instrument 'FEI VITROBOT MARK II' _em_vitrification.method 'Blot for 4-6 seconds' _em_vitrification.specimen_id 1 _em_vitrification.temp 120 _em_vitrification.time_resolved_state ? # _em_experiment.entry_id 3J9S _em_experiment.id 1 _em_experiment.aggregation_state PARTICLE _em_experiment.entity_assembly_id 1 _em_experiment.reconstruction_method 'SINGLE PARTICLE' # _em_single_particle_entity.entry_id 3J9S _em_single_particle_entity.id 1 _em_single_particle_entity.point_symmetry I _em_single_particle_entity.image_processing_id 1 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 C A ASN 250 ? ? N A PRO 251 ? ? CD A PRO 251 ? ? 141.88 128.40 13.48 2.10 Y 2 1 CA A PRO 251 ? ? N A PRO 251 ? ? CD A PRO 251 ? ? 103.07 111.70 -8.63 1.40 N 3 1 C A GLN 312 ? ? N A PRO 313 ? ? CD A PRO 313 ? ? 137.97 120.60 17.37 2.20 Y # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id ASP _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 228 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi 91.34 _pdbx_validate_torsion.psi 154.24 # _em_ctf_correction.id 1 _em_ctf_correction.details 'each particle' _em_ctf_correction.type . # _em_image_processing.id 1 _em_image_processing.image_recording_id 1 _em_image_processing.details ? # _em_image_recording.avg_electron_dose_per_image 100 _em_image_recording.details '130 frames, 0.1 seconds per frame, 100 e/A2, super resolution' _em_image_recording.id 1 _em_image_recording.film_or_detector_model 'GATAN K2 (4k x 4k)' _em_image_recording.imaging_id 1 _em_image_recording.detector_mode ? _em_image_recording.average_exposure_time ? _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged ? _em_image_recording.num_real_images ? # loop_ _em_software.id _em_software.name _em_software.version _em_software.category _em_software.details _em_software.image_processing_id 1 Coot ? 'MODEL FITTING' ? ? 2 Coot ? 'MODEL FITTING' ? ? 3 FREALIGN ? RECONSTRUCTION ? 1 4 IMAGIC ? RECONSTRUCTION ? 1 5 TIGRIS ? RECONSTRUCTION ? 1 # _em_specimen.experiment_id 1 _em_specimen.id 1 _em_specimen.concentration 2.5 _em_specimen.vitrification_applied YES _em_specimen.staining_applied NO _em_specimen.embedding_applied NO _em_specimen.shadowing_applied NO _em_specimen.details ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'ZINC ION' ZN 3 'CHLORIDE ION' CL 4 'CALCIUM ION' CA 5 water HOH #