data_3JAU # _entry.id 3JAU # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.397 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI RCSB RCSB160468 ? ? PDB 3JAU pdb_00003jau 10.2210/pdb3jau/pdb WWPDB D_1000160468 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2016-02-10 2 'Structure model' 1 1 2016-10-26 3 'Structure model' 1 2 2019-12-18 4 'Structure model' 1 3 2024-10-09 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 2 'Structure model' 'Source and taxonomy' 3 3 'Structure model' 'Data collection' 4 3 'Structure model' 'Database references' 5 4 'Structure model' 'Data collection' 6 4 'Structure model' 'Database references' 7 4 'Structure model' 'Derived calculations' 8 4 'Structure model' 'Refinement description' 9 4 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' database_2 2 3 'Structure model' em_image_scans 3 3 'Structure model' em_software 4 4 'Structure model' chem_comp_atom 5 4 'Structure model' chem_comp_bond 6 4 'Structure model' database_2 7 4 'Structure model' em_3d_fitting_list 8 4 'Structure model' pdbx_entry_details 9 4 'Structure model' pdbx_initial_refinement_model 10 4 'Structure model' pdbx_modification_feature 11 4 'Structure model' pdbx_struct_oper_list # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_em_3d_fitting_list.accession_code' 4 4 'Structure model' '_em_3d_fitting_list.initial_refinement_model_id' 5 4 'Structure model' '_em_3d_fitting_list.source_name' 6 4 'Structure model' '_em_3d_fitting_list.type' 7 4 'Structure model' '_pdbx_struct_oper_list.name' 8 4 'Structure model' '_pdbx_struct_oper_list.symmetry_operation' 9 4 'Structure model' '_pdbx_struct_oper_list.type' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3JAU _pdbx_database_status.recvd_initial_deposition_date 2015-06-24 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # _pdbx_database_related.db_name EMDB _pdbx_database_related.db_id EMD-6366 _pdbx_database_related.content_type 'associated EM volume' _pdbx_database_related.details . # loop_ _audit_author.pdbx_ordinal _audit_author.name 1 'Fan, C.' 2 'Ye, X.H.' 3 'Ku, Z.Q.' 4 'Zuo, T.' 5 'Kong, L.L.' 6 'Zhang, C.' 7 'Shi, J.P.' 8 'Liu, Q.W.' 9 'Chen, T.' 10 'Zhang, Y.Y.' 11 'Jiang, W.' 12 'Zhang, L.Q.' 13 'Huang, Z.' 14 'Cong, Y.' # _citation.id primary _citation.title 'Structural Basis for Recognition of Human Enterovirus 71 by a Bivalent Broadly Neutralizing Monoclonal Antibody' _citation.journal_abbrev 'Plos Pathog.' _citation.journal_volume 12 _citation.page_first e1005454 _citation.page_last e1005454 _citation.year 2016 _citation.journal_id_ASTM ? _citation.country US _citation.journal_id_ISSN 1553-7374 _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 26938634 _citation.pdbx_database_id_DOI 10.1371/journal.ppat.1005454 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Ye, X.H.' 1 ? primary 'Fan, C.' 2 ? primary 'Ku, Z.Q.' 3 ? primary 'Zuo, T.' 4 ? primary 'Kong, L.L.' 5 ? primary 'Zhang, C.' 6 ? primary 'Shi, J.P.' 7 ? primary 'Liu, Q.W.' 8 ? primary 'Chen, T.' 9 ? primary 'Zhang, Y.Y.' 10 ? primary 'Jiang, W.' 11 ? primary 'Zhang, L.Q.' 12 ? primary 'Huang, Z.' 13 ? primary 'Cong, Y.' 14 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer nat 'Capsid protein VP1' 2001.133 1 ? ? 'UNP residues 207-223' ? 2 polymer nat 'Heavy chain of Fab fragment variable region of antibody D5' 13026.259 1 ? ? ? ? 3 polymer nat 'Light chain of Fab fragment variable region of antibody D5' 12112.521 1 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no GYPTFGEHKQEKDLEYG GYPTFGEHKQEKDLEYG A ? 2 'polypeptide(L)' no no ;EVQLQQSGAELVKPGASVKLSCTASGFNIKDTYIHWVKQRPEQGLEWIGKIDPANGNTKYDPKFQDKATITADTSSNTAY LQLSSLTSEDTAVYYCANSNYWFDFDYWGQGTTLTVS ; ;EVQLQQSGAELVKPGASVKLSCTASGFNIKDTYIHWVKQRPEQGLEWIGKIDPANGNTKYDPKFQDKATITADTSSNTAY LQLSSLTSEDTAVYYCANSNYWFDFDYWGQGTTLTVS ; H ? 3 'polypeptide(L)' no no ;DVLMTQTPLSLPVSLGDQASISCRSSQSIVHSNGNTYLEWYLQKPGQSPKLLIYKVSNRFSGVPDRFSGSGSGTDFTLKI SRVEADDVGVYYCYQGSHVPYTFGGGTKLEI ; ;DVLMTQTPLSLPVSLGDQASISCRSSQSIVHSNGNTYLEWYLQKPGQSPKLLIYKVSNRFSGVPDRFSGSGSGTDFTLKI SRVEADDVGVYYCYQGSHVPYTFGGGTKLEI ; L ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 TYR n 1 3 PRO n 1 4 THR n 1 5 PHE n 1 6 GLY n 1 7 GLU n 1 8 HIS n 1 9 LYS n 1 10 GLN n 1 11 GLU n 1 12 LYS n 1 13 ASP n 1 14 LEU n 1 15 GLU n 1 16 TYR n 1 17 GLY n 2 1 GLU n 2 2 VAL n 2 3 GLN n 2 4 LEU n 2 5 GLN n 2 6 GLN n 2 7 SER n 2 8 GLY n 2 9 ALA n 2 10 GLU n 2 11 LEU n 2 12 VAL n 2 13 LYS n 2 14 PRO n 2 15 GLY n 2 16 ALA n 2 17 SER n 2 18 VAL n 2 19 LYS n 2 20 LEU n 2 21 SER n 2 22 CYS n 2 23 THR n 2 24 ALA n 2 25 SER n 2 26 GLY n 2 27 PHE n 2 28 ASN n 2 29 ILE n 2 30 LYS n 2 31 ASP n 2 32 THR n 2 33 TYR n 2 34 ILE n 2 35 HIS n 2 36 TRP n 2 37 VAL n 2 38 LYS n 2 39 GLN n 2 40 ARG n 2 41 PRO n 2 42 GLU n 2 43 GLN n 2 44 GLY n 2 45 LEU n 2 46 GLU n 2 47 TRP n 2 48 ILE n 2 49 GLY n 2 50 LYS n 2 51 ILE n 2 52 ASP n 2 53 PRO n 2 54 ALA n 2 55 ASN n 2 56 GLY n 2 57 ASN n 2 58 THR n 2 59 LYS n 2 60 TYR n 2 61 ASP n 2 62 PRO n 2 63 LYS n 2 64 PHE n 2 65 GLN n 2 66 ASP n 2 67 LYS n 2 68 ALA n 2 69 THR n 2 70 ILE n 2 71 THR n 2 72 ALA n 2 73 ASP n 2 74 THR n 2 75 SER n 2 76 SER n 2 77 ASN n 2 78 THR n 2 79 ALA n 2 80 TYR n 2 81 LEU n 2 82 GLN n 2 83 LEU n 2 84 SER n 2 85 SER n 2 86 LEU n 2 87 THR n 2 88 SER n 2 89 GLU n 2 90 ASP n 2 91 THR n 2 92 ALA n 2 93 VAL n 2 94 TYR n 2 95 TYR n 2 96 CYS n 2 97 ALA n 2 98 ASN n 2 99 SER n 2 100 ASN n 2 101 TYR n 2 102 TRP n 2 103 PHE n 2 104 ASP n 2 105 PHE n 2 106 ASP n 2 107 TYR n 2 108 TRP n 2 109 GLY n 2 110 GLN n 2 111 GLY n 2 112 THR n 2 113 THR n 2 114 LEU n 2 115 THR n 2 116 VAL n 2 117 SER n 3 1 ASP n 3 2 VAL n 3 3 LEU n 3 4 MET n 3 5 THR n 3 6 GLN n 3 7 THR n 3 8 PRO n 3 9 LEU n 3 10 SER n 3 11 LEU n 3 12 PRO n 3 13 VAL n 3 14 SER n 3 15 LEU n 3 16 GLY n 3 17 ASP n 3 18 GLN n 3 19 ALA n 3 20 SER n 3 21 ILE n 3 22 SER n 3 23 CYS n 3 24 ARG n 3 25 SER n 3 26 SER n 3 27 GLN n 3 28 SER n 3 29 ILE n 3 30 VAL n 3 31 HIS n 3 32 SER n 3 33 ASN n 3 34 GLY n 3 35 ASN n 3 36 THR n 3 37 TYR n 3 38 LEU n 3 39 GLU n 3 40 TRP n 3 41 TYR n 3 42 LEU n 3 43 GLN n 3 44 LYS n 3 45 PRO n 3 46 GLY n 3 47 GLN n 3 48 SER n 3 49 PRO n 3 50 LYS n 3 51 LEU n 3 52 LEU n 3 53 ILE n 3 54 TYR n 3 55 LYS n 3 56 VAL n 3 57 SER n 3 58 ASN n 3 59 ARG n 3 60 PHE n 3 61 SER n 3 62 GLY n 3 63 VAL n 3 64 PRO n 3 65 ASP n 3 66 ARG n 3 67 PHE n 3 68 SER n 3 69 GLY n 3 70 SER n 3 71 GLY n 3 72 SER n 3 73 GLY n 3 74 THR n 3 75 ASP n 3 76 PHE n 3 77 THR n 3 78 LEU n 3 79 LYS n 3 80 ILE n 3 81 SER n 3 82 ARG n 3 83 VAL n 3 84 GLU n 3 85 ALA n 3 86 ASP n 3 87 ASP n 3 88 VAL n 3 89 GLY n 3 90 VAL n 3 91 TYR n 3 92 TYR n 3 93 CYS n 3 94 TYR n 3 95 GLN n 3 96 GLY n 3 97 SER n 3 98 HIS n 3 99 VAL n 3 100 PRO n 3 101 TYR n 3 102 THR n 3 103 PHE n 3 104 GLY n 3 105 GLY n 3 106 GLY n 3 107 THR n 3 108 LYS n 3 109 LEU n 3 110 GLU n 3 111 ILE n # loop_ _entity_src_nat.entity_id _entity_src_nat.pdbx_src_id _entity_src_nat.pdbx_alt_source_flag _entity_src_nat.pdbx_beg_seq_num _entity_src_nat.pdbx_end_seq_num _entity_src_nat.common_name _entity_src_nat.pdbx_organism_scientific _entity_src_nat.pdbx_ncbi_taxonomy_id _entity_src_nat.genus _entity_src_nat.species _entity_src_nat.strain _entity_src_nat.tissue _entity_src_nat.tissue_fraction _entity_src_nat.pdbx_secretion _entity_src_nat.pdbx_fragment _entity_src_nat.pdbx_variant _entity_src_nat.pdbx_cell_line _entity_src_nat.pdbx_atcc _entity_src_nat.pdbx_cellular_location _entity_src_nat.pdbx_organ _entity_src_nat.pdbx_organelle _entity_src_nat.pdbx_cell _entity_src_nat.pdbx_plasmid_name _entity_src_nat.pdbx_plasmid_details _entity_src_nat.details 1 1 sample ? ? ? 'Human enterovirus' 1193974 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 2 1 sample ? ? Mouse 'Mus musculus ' 10090 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 3 1 sample ? ? Mouse 'Mus musculus ' 10090 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 207 207 GLY GLY A . n A 1 2 TYR 2 208 208 TYR TYR A . n A 1 3 PRO 3 209 209 PRO PRO A . n A 1 4 THR 4 210 210 THR THR A . n A 1 5 PHE 5 211 211 PHE PHE A . n A 1 6 GLY 6 212 212 GLY GLY A . n A 1 7 GLU 7 213 213 GLU GLU A . n A 1 8 HIS 8 214 214 HIS HIS A . n A 1 9 LYS 9 215 215 LYS LYS A . n A 1 10 GLN 10 216 216 GLN GLN A . n A 1 11 GLU 11 217 217 GLU GLU A . n A 1 12 LYS 12 218 218 LYS LYS A . n A 1 13 ASP 13 219 219 ASP ASP A . n A 1 14 LEU 14 220 220 LEU LEU A . n A 1 15 GLU 15 221 221 GLU GLU A . n A 1 16 TYR 16 222 222 TYR TYR A . n A 1 17 GLY 17 223 223 GLY GLY A . n B 2 1 GLU 1 1 1 GLU GLU H . n B 2 2 VAL 2 2 2 VAL VAL H . n B 2 3 GLN 3 3 3 GLN GLN H . n B 2 4 LEU 4 4 4 LEU LEU H . n B 2 5 GLN 5 5 5 GLN GLN H . n B 2 6 GLN 6 6 6 GLN GLN H . n B 2 7 SER 7 7 7 SER SER H . n B 2 8 GLY 8 8 8 GLY GLY H . n B 2 9 ALA 9 9 9 ALA ALA H . n B 2 10 GLU 10 10 10 GLU GLU H . n B 2 11 LEU 11 11 11 LEU LEU H . n B 2 12 VAL 12 12 12 VAL VAL H . n B 2 13 LYS 13 13 13 LYS LYS H . n B 2 14 PRO 14 14 14 PRO PRO H . n B 2 15 GLY 15 15 15 GLY GLY H . n B 2 16 ALA 16 16 16 ALA ALA H . n B 2 17 SER 17 17 17 SER SER H . n B 2 18 VAL 18 18 18 VAL VAL H . n B 2 19 LYS 19 19 19 LYS LYS H . n B 2 20 LEU 20 20 20 LEU LEU H . n B 2 21 SER 21 21 21 SER SER H . n B 2 22 CYS 22 22 22 CYS CYS H . n B 2 23 THR 23 23 23 THR THR H . n B 2 24 ALA 24 24 24 ALA ALA H . n B 2 25 SER 25 25 25 SER SER H . n B 2 26 GLY 26 26 26 GLY GLY H . n B 2 27 PHE 27 27 27 PHE PHE H . n B 2 28 ASN 28 28 28 ASN ASN H . n B 2 29 ILE 29 29 29 ILE ILE H . n B 2 30 LYS 30 30 30 LYS LYS H . n B 2 31 ASP 31 31 31 ASP ASP H . n B 2 32 THR 32 32 32 THR THR H . n B 2 33 TYR 33 33 33 TYR TYR H . n B 2 34 ILE 34 34 34 ILE ILE H . n B 2 35 HIS 35 35 35 HIS HIS H . n B 2 36 TRP 36 36 36 TRP TRP H . n B 2 37 VAL 37 37 37 VAL VAL H . n B 2 38 LYS 38 38 38 LYS LYS H . n B 2 39 GLN 39 39 39 GLN GLN H . n B 2 40 ARG 40 40 40 ARG ARG H . n B 2 41 PRO 41 41 41 PRO PRO H . n B 2 42 GLU 42 42 42 GLU GLU H . n B 2 43 GLN 43 43 43 GLN GLN H . n B 2 44 GLY 44 44 44 GLY GLY H . n B 2 45 LEU 45 45 45 LEU LEU H . n B 2 46 GLU 46 46 46 GLU GLU H . n B 2 47 TRP 47 47 47 TRP TRP H . n B 2 48 ILE 48 48 48 ILE ILE H . n B 2 49 GLY 49 49 49 GLY GLY H . n B 2 50 LYS 50 50 50 LYS LYS H . n B 2 51 ILE 51 51 51 ILE ILE H . n B 2 52 ASP 52 52 52 ASP ASP H . n B 2 53 PRO 53 53 53 PRO PRO H . n B 2 54 ALA 54 54 54 ALA ALA H . n B 2 55 ASN 55 55 55 ASN ASN H . n B 2 56 GLY 56 56 56 GLY GLY H . n B 2 57 ASN 57 57 57 ASN ASN H . n B 2 58 THR 58 58 58 THR THR H . n B 2 59 LYS 59 59 59 LYS LYS H . n B 2 60 TYR 60 60 60 TYR TYR H . n B 2 61 ASP 61 61 61 ASP ASP H . n B 2 62 PRO 62 62 62 PRO PRO H . n B 2 63 LYS 63 63 63 LYS LYS H . n B 2 64 PHE 64 64 64 PHE PHE H . n B 2 65 GLN 65 65 65 GLN GLN H . n B 2 66 ASP 66 66 66 ASP ASP H . n B 2 67 LYS 67 67 67 LYS LYS H . n B 2 68 ALA 68 68 68 ALA ALA H . n B 2 69 THR 69 69 69 THR THR H . n B 2 70 ILE 70 70 70 ILE ILE H . n B 2 71 THR 71 71 71 THR THR H . n B 2 72 ALA 72 72 72 ALA ALA H . n B 2 73 ASP 73 73 73 ASP ASP H . n B 2 74 THR 74 74 74 THR THR H . n B 2 75 SER 75 75 75 SER SER H . n B 2 76 SER 76 76 76 SER SER H . n B 2 77 ASN 77 77 77 ASN ASN H . n B 2 78 THR 78 78 78 THR THR H . n B 2 79 ALA 79 79 79 ALA ALA H . n B 2 80 TYR 80 80 80 TYR TYR H . n B 2 81 LEU 81 81 81 LEU LEU H . n B 2 82 GLN 82 82 82 GLN GLN H . n B 2 83 LEU 83 83 83 LEU LEU H . n B 2 84 SER 84 84 84 SER SER H . n B 2 85 SER 85 85 85 SER SER H . n B 2 86 LEU 86 86 86 LEU LEU H . n B 2 87 THR 87 87 87 THR THR H . n B 2 88 SER 88 88 88 SER SER H . n B 2 89 GLU 89 89 89 GLU GLU H . n B 2 90 ASP 90 90 90 ASP ASP H . n B 2 91 THR 91 91 91 THR THR H . n B 2 92 ALA 92 92 92 ALA ALA H . n B 2 93 VAL 93 93 93 VAL VAL H . n B 2 94 TYR 94 94 94 TYR TYR H . n B 2 95 TYR 95 95 95 TYR TYR H . n B 2 96 CYS 96 96 96 CYS CYS H . n B 2 97 ALA 97 97 97 ALA ALA H . n B 2 98 ASN 98 98 98 ASN ASN H . n B 2 99 SER 99 99 99 SER SER H . n B 2 100 ASN 100 100 100 ASN ASN H . n B 2 101 TYR 101 101 101 TYR TYR H . n B 2 102 TRP 102 102 102 TRP TRP H . n B 2 103 PHE 103 103 103 PHE PHE H . n B 2 104 ASP 104 104 104 ASP ASP H . n B 2 105 PHE 105 105 105 PHE PHE H . n B 2 106 ASP 106 106 106 ASP ASP H . n B 2 107 TYR 107 107 107 TYR TYR H . n B 2 108 TRP 108 108 108 TRP TRP H . n B 2 109 GLY 109 109 109 GLY GLY H . n B 2 110 GLN 110 110 110 GLN GLN H . n B 2 111 GLY 111 111 111 GLY GLY H . n B 2 112 THR 112 112 112 THR THR H . n B 2 113 THR 113 113 113 THR THR H . n B 2 114 LEU 114 114 114 LEU LEU H . n B 2 115 THR 115 115 115 THR THR H . n B 2 116 VAL 116 116 116 VAL VAL H . n B 2 117 SER 117 117 117 SER SER H . n C 3 1 ASP 1 1 1 ASP ASP L . n C 3 2 VAL 2 2 2 VAL VAL L . n C 3 3 LEU 3 3 3 LEU LEU L . n C 3 4 MET 4 4 4 MET MET L . n C 3 5 THR 5 5 5 THR THR L . n C 3 6 GLN 6 6 6 GLN GLN L . n C 3 7 THR 7 7 7 THR THR L . n C 3 8 PRO 8 8 8 PRO PRO L . n C 3 9 LEU 9 9 9 LEU LEU L . n C 3 10 SER 10 10 10 SER SER L . n C 3 11 LEU 11 11 11 LEU LEU L . n C 3 12 PRO 12 12 12 PRO PRO L . n C 3 13 VAL 13 13 13 VAL VAL L . n C 3 14 SER 14 14 14 SER SER L . n C 3 15 LEU 15 15 15 LEU LEU L . n C 3 16 GLY 16 16 16 GLY GLY L . n C 3 17 ASP 17 17 17 ASP ASP L . n C 3 18 GLN 18 18 18 GLN GLN L . n C 3 19 ALA 19 19 19 ALA ALA L . n C 3 20 SER 20 20 20 SER SER L . n C 3 21 ILE 21 21 21 ILE ILE L . n C 3 22 SER 22 22 22 SER SER L . n C 3 23 CYS 23 23 23 CYS CYS L . n C 3 24 ARG 24 24 24 ARG ARG L . n C 3 25 SER 25 25 25 SER SER L . n C 3 26 SER 26 26 26 SER SER L . n C 3 27 GLN 27 27 27 GLN GLN L . n C 3 28 SER 28 28 28 SER SER L . n C 3 29 ILE 29 29 29 ILE ILE L . n C 3 30 VAL 30 30 30 VAL VAL L . n C 3 31 HIS 31 31 31 HIS HIS L . n C 3 32 SER 32 32 32 SER SER L . n C 3 33 ASN 33 33 33 ASN ASN L . n C 3 34 GLY 34 34 34 GLY GLY L . n C 3 35 ASN 35 35 35 ASN ASN L . n C 3 36 THR 36 36 36 THR THR L . n C 3 37 TYR 37 37 37 TYR TYR L . n C 3 38 LEU 38 38 38 LEU LEU L . n C 3 39 GLU 39 39 39 GLU GLU L . n C 3 40 TRP 40 40 40 TRP TRP L . n C 3 41 TYR 41 41 41 TYR TYR L . n C 3 42 LEU 42 42 42 LEU LEU L . n C 3 43 GLN 43 43 43 GLN GLN L . n C 3 44 LYS 44 44 44 LYS LYS L . n C 3 45 PRO 45 45 45 PRO PRO L . n C 3 46 GLY 46 46 46 GLY GLY L . n C 3 47 GLN 47 47 47 GLN GLN L . n C 3 48 SER 48 48 48 SER SER L . n C 3 49 PRO 49 49 49 PRO PRO L . n C 3 50 LYS 50 50 50 LYS LYS L . n C 3 51 LEU 51 51 51 LEU LEU L . n C 3 52 LEU 52 52 52 LEU LEU L . n C 3 53 ILE 53 53 53 ILE ILE L . n C 3 54 TYR 54 54 54 TYR TYR L . n C 3 55 LYS 55 55 55 LYS LYS L . n C 3 56 VAL 56 56 56 VAL VAL L . n C 3 57 SER 57 57 57 SER SER L . n C 3 58 ASN 58 58 58 ASN ASN L . n C 3 59 ARG 59 59 59 ARG ARG L . n C 3 60 PHE 60 60 60 PHE PHE L . n C 3 61 SER 61 61 61 SER SER L . n C 3 62 GLY 62 62 62 GLY GLY L . n C 3 63 VAL 63 63 63 VAL VAL L . n C 3 64 PRO 64 64 64 PRO PRO L . n C 3 65 ASP 65 65 65 ASP ASP L . n C 3 66 ARG 66 66 66 ARG ARG L . n C 3 67 PHE 67 67 67 PHE PHE L . n C 3 68 SER 68 68 68 SER SER L . n C 3 69 GLY 69 69 69 GLY GLY L . n C 3 70 SER 70 70 70 SER SER L . n C 3 71 GLY 71 71 71 GLY GLY L . n C 3 72 SER 72 72 72 SER SER L . n C 3 73 GLY 73 73 73 GLY GLY L . n C 3 74 THR 74 74 74 THR THR L . n C 3 75 ASP 75 75 75 ASP ASP L . n C 3 76 PHE 76 76 76 PHE PHE L . n C 3 77 THR 77 77 77 THR THR L . n C 3 78 LEU 78 78 78 LEU LEU L . n C 3 79 LYS 79 79 79 LYS LYS L . n C 3 80 ILE 80 80 80 ILE ILE L . n C 3 81 SER 81 81 81 SER SER L . n C 3 82 ARG 82 82 82 ARG ARG L . n C 3 83 VAL 83 83 83 VAL VAL L . n C 3 84 GLU 84 84 84 GLU GLU L . n C 3 85 ALA 85 85 85 ALA ALA L . n C 3 86 ASP 86 86 86 ASP ASP L . n C 3 87 ASP 87 87 87 ASP ASP L . n C 3 88 VAL 88 88 88 VAL VAL L . n C 3 89 GLY 89 89 89 GLY GLY L . n C 3 90 VAL 90 90 90 VAL VAL L . n C 3 91 TYR 91 91 91 TYR TYR L . n C 3 92 TYR 92 92 92 TYR TYR L . n C 3 93 CYS 93 93 93 CYS CYS L . n C 3 94 TYR 94 94 94 TYR TYR L . n C 3 95 GLN 95 95 95 GLN GLN L . n C 3 96 GLY 96 96 96 GLY GLY L . n C 3 97 SER 97 97 97 SER SER L . n C 3 98 HIS 98 98 98 HIS HIS L . n C 3 99 VAL 99 99 99 VAL VAL L . n C 3 100 PRO 100 100 100 PRO PRO L . n C 3 101 TYR 101 101 101 TYR TYR L . n C 3 102 THR 102 102 102 THR THR L . n C 3 103 PHE 103 103 103 PHE PHE L . n C 3 104 GLY 104 104 104 GLY GLY L . n C 3 105 GLY 105 105 105 GLY GLY L . n C 3 106 GLY 106 106 106 GLY GLY L . n C 3 107 THR 107 107 107 THR THR L . n C 3 108 LYS 108 108 108 LYS LYS L . n C 3 109 LEU 109 109 109 LEU LEU L . n C 3 110 GLU 110 110 110 GLU GLU L . n C 3 111 ILE 111 111 111 ILE ILE L . n # _cell.entry_id 3JAU _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3JAU _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 # _exptl.entry_id 3JAU _exptl.method 'ELECTRON MICROSCOPY' _exptl.crystals_number ? # _refine_hist.pdbx_refine_id 'ELECTRON MICROSCOPY' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1915 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 0 _refine_hist.number_atoms_total 1915 _refine_hist.d_res_high . _refine_hist.d_res_low . # _database_PDB_matrix.entry_id 3JAU _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 3JAU _struct.title 'The cryoEM map of EV71 mature viron in complex with the Fab fragment of antibody D5' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3JAU _struct_keywords.pdbx_keywords 'VIRUS/IMMUNE SYSTEM' _struct_keywords.text 'Enterovirus 71(EV71), virus-antibody complex, bivalent binding, high resolution cryo-EM, VIRUS-IMMUNE SYSTEM complex' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP X2L816_9ENTO X2L816 1 GYPTFGEHKQEKDLEYG 207 ? 2 PDB 3JAU 3JAU 2 ? ? ? 3 PDB 3JAU 3JAU 3 ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3JAU A 1 ? 17 ? X2L816 207 ? 223 ? 207 223 2 2 3JAU H 1 ? 117 ? 3JAU 1 ? 117 ? 1 117 3 3 3JAU L 1 ? 111 ? 3JAU 1 ? 111 ? 1 111 # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 'complete icosahedral assembly' ? 180-MERIC 180 2 'icosahedral asymmetric unit' ? trimeric 3 3 'icosahedral pentamer' ? pentadecameric 15 4 'icosahedral 23 hexamer' ? octadecameric 18 5 'icosahedral asymmetric unit, std point frame' ? trimeric 3 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 '(1-60)' A,B,C 2 1 A,B,C 3 '(1-5)' A,B,C 4 '(1,2,6,10,23,24)' A,B,C 5 P A,B,C # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] P 'transform to point frame' ? ? 0.80901699 -0.50000000 0.30901699 0.00000 0.50000000 0.30901699 -0.80901699 0.00000 0.30901699 0.80901699 0.50000000 0.00000 1 'identity operation' 1_555 x,y,z 1.00000000 0.00000000 0.00000000 0.00000 0.00000000 1.00000000 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 0.00000 2 'point symmetry operation' ? ? 0.50000000 0.30901700 0.80901699 0.00000 0.30901700 0.80901699 -0.50000000 0.00000 -0.80901699 0.50000000 0.30901700 0.00000 3 'point symmetry operation' ? ? -0.30901700 0.80901700 0.50000000 0.00000 0.80901700 0.50000000 -0.30901699 0.00000 -0.50000000 0.30901700 -0.80901699 0.00000 4 'point symmetry operation' ? ? -0.30901699 0.80901700 -0.50000000 0.00000 0.80901699 0.50000000 0.30901700 0.00000 0.50000000 -0.30901700 -0.80901700 0.00000 5 'point symmetry operation' ? ? 0.50000000 0.30901699 -0.80901699 0.00000 0.30901699 0.80901700 0.50000000 0.00000 0.80901700 -0.50000000 0.30901699 0.00000 6 'point symmetry operation' ? ? -0.80901699 0.50000001 0.30901700 0.00000 0.49999999 0.30901699 0.80901700 0.00000 0.30901699 0.80901699 -0.50000000 0.00000 7 'point symmetry operation' ? ? -0.50000000 0.30901700 -0.80901699 0.00000 -0.30901700 0.80901699 0.50000000 0.00000 0.80901699 0.50000000 -0.30901700 0.00000 8 'point symmetry operation' ? ? 0.50000000 -0.30901699 -0.80901700 0.00000 -0.30901700 0.80901699 -0.50000000 0.00000 0.80901699 0.50000000 0.30901699 0.00000 9 'point symmetry operation' ? ? 0.80901700 -0.50000000 0.30901699 0.00000 0.50000000 0.30901699 -0.80901700 0.00000 0.30901699 0.80901699 0.50000000 0.00000 10 'point symmetry operation' ? ? 0.00000000 0.00000000 1.00000000 0.00000 1.00000000 0.00000000 0.00000000 0.00000 0.00000000 1.00000000 0.00000000 0.00000 11 'point symmetry operation' ? ? -0.50000000 0.30901699 -0.80901699 0.00000 0.30901700 -0.80901699 -0.50000001 0.00000 -0.80901700 -0.49999999 0.30901699 0.00000 12 'point symmetry operation' ? ? 0.50000000 -0.30901700 -0.80901699 0.00000 0.30901700 -0.80901699 0.50000000 0.00000 -0.80901699 -0.50000000 -0.30901700 0.00000 13 'point symmetry operation' ? ? 0.80901699 -0.50000000 0.30901699 0.00000 -0.50000000 -0.30901699 0.80901700 0.00000 -0.30901699 -0.80901700 -0.50000000 0.00000 14 'point symmetry operation' ? ? 0.00000000 0.00000000 1.00000000 0.00000 -1.00000000 0.00000000 0.00000000 0.00000 0.00000000 -1.00000000 0.00000000 0.00000 15 'point symmetry operation' ? ? -0.80901700 0.50000000 0.30901700 0.00000 -0.50000000 -0.30901699 -0.80901700 0.00000 -0.30901700 -0.80901699 0.50000000 0.00000 16 'point symmetry operation' ? ? 0.30901699 -0.80901700 0.49999999 0.00000 -0.80901699 -0.50000000 -0.30901699 0.00000 0.50000001 -0.30901700 -0.80901699 0.00000 17 'point symmetry operation' ? ? -0.50000000 -0.30901700 0.80901699 0.00000 -0.30901700 -0.80901699 -0.50000000 0.00000 0.80901699 -0.50000000 0.30901700 0.00000 18 'point symmetry operation' ? ? -1.00000000 0.00000000 0.00000000 0.00000 0.00000000 -1.00000000 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 0.00000 19 'point symmetry operation' ? ? -0.50000000 -0.30901700 -0.80901699 0.00000 -0.30901699 -0.80901699 0.50000000 0.00000 -0.80901700 0.50000000 0.30901699 0.00000 20 'point symmetry operation' ? ? 0.30901699 -0.80901700 -0.50000000 0.00000 -0.80901699 -0.50000000 0.30901700 0.00000 -0.50000000 0.30901699 -0.80901699 0.00000 21 'point symmetry operation' ? ? 0.80901699 0.50000000 0.30901699 0.00000 0.50000001 -0.30901700 -0.80901699 0.00000 -0.30901699 0.80901700 -0.49999999 0.00000 22 'point symmetry operation' ? ? 0.30901700 0.80901699 0.50000000 0.00000 0.80901699 -0.50000000 0.30901700 0.00000 0.50000000 0.30901700 -0.80901699 0.00000 23 'point symmetry operation' ? ? 0.00000000 1.00000000 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 0.00000 1.00000000 0.00000000 0.00000000 0.00000 24 'point symmetry operation' ? ? 0.30901699 0.80901699 -0.50000000 0.00000 -0.80901700 0.50000000 0.30901699 0.00000 0.50000000 0.30901700 0.80901699 0.00000 25 'point symmetry operation' ? ? 0.80901699 0.50000000 -0.30901700 0.00000 -0.50000000 0.30901699 -0.80901699 0.00000 -0.30901699 0.80901700 0.50000000 0.00000 26 'point symmetry operation' ? ? -0.30901700 0.80901699 0.50000001 0.00000 -0.80901700 -0.49999999 0.30901699 0.00000 0.50000000 -0.30901699 0.80901699 0.00000 27 'point symmetry operation' ? ? -0.30901700 0.80901699 -0.50000000 0.00000 -0.80901699 -0.50000000 -0.30901700 0.00000 -0.50000000 0.30901700 0.80901699 0.00000 28 'point symmetry operation' ? ? 0.50000000 0.30901699 -0.80901700 0.00000 -0.30901699 -0.80901700 -0.50000000 0.00000 -0.80901699 0.50000000 -0.30901699 0.00000 29 'point symmetry operation' ? ? 1.00000000 0.00000000 0.00000000 0.00000 0.00000000 -1.00000000 0.00000000 0.00000 0.00000000 0.00000000 -1.00000000 0.00000 30 'point symmetry operation' ? ? 0.50000000 0.30901699 0.80901700 0.00000 -0.30901700 -0.80901699 0.50000000 0.00000 0.80901700 -0.50000000 -0.30901700 0.00000 31 'point symmetry operation' ? ? -0.49999999 -0.30901699 -0.80901700 0.00000 0.30901699 0.80901699 -0.50000000 0.00000 0.80901699 -0.50000001 -0.30901700 0.00000 32 'point symmetry operation' ? ? 0.30901700 -0.80901699 -0.50000000 0.00000 0.80901699 0.50000000 -0.30901700 0.00000 0.50000000 -0.30901700 0.80901699 0.00000 33 'point symmetry operation' ? ? 0.30901700 -0.80901699 0.50000000 0.00000 0.80901699 0.50000000 0.30901699 0.00000 -0.50000000 0.30901699 0.80901700 0.00000 34 'point symmetry operation' ? ? -0.50000000 -0.30901699 0.80901700 0.00000 0.30901699 0.80901699 0.50000000 0.00000 -0.80901700 0.50000000 -0.30901699 0.00000 35 'point symmetry operation' ? ? -1.00000000 0.00000000 0.00000000 0.00000 0.00000000 1.00000000 0.00000000 0.00000 0.00000000 0.00000000 -1.00000000 0.00000 36 'point symmetry operation' ? ? 0.00000000 -1.00000000 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 0.00000 -1.00000000 0.00000000 0.00000000 0.00000 37 'point symmetry operation' ? ? -0.30901700 -0.80901699 0.50000000 0.00000 -0.80901699 0.50000000 0.30901700 0.00000 -0.50000000 -0.30901700 -0.80901699 0.00000 38 'point symmetry operation' ? ? -0.80901700 -0.50000000 0.30901699 0.00000 -0.50000000 0.30901700 -0.80901699 0.00000 0.30901700 -0.80901700 -0.50000000 0.00000 39 'point symmetry operation' ? ? -0.80901699 -0.50000000 -0.30901700 0.00000 0.50000000 -0.30901700 -0.80901700 0.00000 0.30901699 -0.80901700 0.50000000 0.00000 40 'point symmetry operation' ? ? -0.30901699 -0.80901700 -0.50000000 0.00000 0.80901700 -0.50000000 0.30901699 0.00000 -0.50000000 -0.30901699 0.80901699 0.00000 41 'point symmetry operation' ? ? 0.80901700 0.49999999 -0.30901699 0.00000 0.50000000 -0.30901699 0.80901699 0.00000 0.30901700 -0.80901699 -0.50000001 0.00000 42 'point symmetry operation' ? ? 0.80901699 0.50000000 0.30901700 0.00000 -0.50000000 0.30901700 0.80901699 0.00000 0.30901700 -0.80901699 0.50000000 0.00000 43 'point symmetry operation' ? ? 0.30901699 0.80901700 0.50000000 0.00000 -0.80901699 0.50000000 -0.30901699 0.00000 -0.50000000 -0.30901699 0.80901700 0.00000 44 'point symmetry operation' ? ? 0.00000000 1.00000000 0.00000000 0.00000 0.00000000 0.00000000 -1.00000000 0.00000 -1.00000000 0.00000000 0.00000000 0.00000 45 'point symmetry operation' ? ? 0.30901700 0.80901699 -0.50000000 0.00000 0.80901700 -0.50000000 -0.30901700 0.00000 -0.50000000 -0.30901699 -0.80901700 0.00000 46 'point symmetry operation' ? ? -0.50000001 0.30901700 0.80901699 0.00000 -0.30901699 0.80901700 -0.49999999 0.00000 -0.80901699 -0.50000000 -0.30901699 0.00000 47 'point symmetry operation' ? ? -0.80901699 0.50000000 -0.30901700 0.00000 0.50000000 0.30901700 -0.80901699 0.00000 -0.30901700 -0.80901699 -0.50000000 0.00000 48 'point symmetry operation' ? ? 0.00000000 0.00000000 -1.00000000 0.00000 1.00000000 0.00000000 0.00000000 0.00000 0.00000000 -1.00000000 0.00000000 0.00000 49 'point symmetry operation' ? ? 0.80901700 -0.50000000 -0.30901699 0.00000 0.50000000 0.30901700 0.80901699 0.00000 -0.30901699 -0.80901699 0.50000000 0.00000 50 'point symmetry operation' ? ? 0.50000000 -0.30901699 0.80901699 0.00000 -0.30901699 0.80901700 0.50000000 0.00000 -0.80901699 -0.50000000 0.30901700 0.00000 51 'point symmetry operation' ? ? 0.00000000 0.00000000 -1.00000000 0.00000 -1.00000000 0.00000000 0.00000000 0.00000 0.00000000 1.00000000 0.00000000 0.00000 52 'point symmetry operation' ? ? 0.80901699 -0.50000000 -0.30901700 0.00000 -0.50000000 -0.30901700 -0.80901699 0.00000 0.30901700 0.80901699 -0.50000000 0.00000 53 'point symmetry operation' ? ? 0.50000000 -0.30901700 0.80901699 0.00000 0.30901700 -0.80901700 -0.50000000 0.00000 0.80901700 0.50000000 -0.30901699 0.00000 54 'point symmetry operation' ? ? -0.50000000 0.30901700 0.80901700 0.00000 0.30901699 -0.80901700 0.50000000 0.00000 0.80901699 0.50000000 0.30901700 0.00000 55 'point symmetry operation' ? ? -0.80901700 0.50000000 -0.30901699 0.00000 -0.50000000 -0.30901699 0.80901699 0.00000 0.30901699 0.80901700 0.50000000 0.00000 56 'point symmetry operation' ? ? -0.30901699 -0.80901699 0.50000000 0.00000 0.80901699 -0.50000001 -0.30901700 0.00000 0.49999999 0.30901699 0.80901700 0.00000 57 'point symmetry operation' ? ? -0.80901699 -0.50000000 0.30901700 0.00000 0.50000000 -0.30901700 0.80901699 0.00000 -0.30901700 0.80901699 0.50000000 0.00000 58 'point symmetry operation' ? ? -0.80901699 -0.50000000 -0.30901699 0.00000 -0.50000000 0.30901699 0.80901700 0.00000 -0.30901700 0.80901699 -0.50000000 0.00000 59 'point symmetry operation' ? ? -0.30901699 -0.80901699 -0.50000000 0.00000 -0.80901700 0.50000000 -0.30901699 0.00000 0.50000000 0.30901699 -0.80901700 0.00000 60 'point symmetry operation' ? ? 0.00000000 -1.00000000 0.00000000 0.00000 0.00000000 0.00000000 -1.00000000 0.00000 1.00000000 0.00000000 0.00000000 0.00000 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLN A 10 ? LEU A 14 ? GLN A 216 LEU A 220 5 ? 5 HELX_P HELX_P2 2 PRO B 62 ? GLN B 65 ? PRO H 62 GLN H 65 5 ? 4 HELX_P HELX_P3 3 THR B 87 ? THR B 91 ? THR H 87 THR H 91 5 ? 5 HELX_P HELX_P4 4 GLU C 84 ? VAL C 88 ? GLU L 84 VAL L 88 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_conn.id disulf1 _struct_conn.conn_type_id disulf _struct_conn.pdbx_leaving_atom_flag ? _struct_conn.pdbx_PDB_id ? _struct_conn.ptnr1_label_asym_id B _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 22 _struct_conn.ptnr1_label_atom_id SG _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 96 _struct_conn.ptnr2_label_atom_id SG _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.ptnr1_auth_asym_id H _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 22 _struct_conn.ptnr2_auth_asym_id H _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 96 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.details ? _struct_conn.pdbx_dist_value 2.007 _struct_conn.pdbx_value_order ? _struct_conn.pdbx_role ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # _pdbx_modification_feature.ordinal 1 _pdbx_modification_feature.label_comp_id CYS _pdbx_modification_feature.label_asym_id B _pdbx_modification_feature.label_seq_id 22 _pdbx_modification_feature.label_alt_id ? _pdbx_modification_feature.modified_residue_label_comp_id CYS _pdbx_modification_feature.modified_residue_label_asym_id B _pdbx_modification_feature.modified_residue_label_seq_id 96 _pdbx_modification_feature.modified_residue_label_alt_id ? _pdbx_modification_feature.auth_comp_id CYS _pdbx_modification_feature.auth_asym_id H _pdbx_modification_feature.auth_seq_id 22 _pdbx_modification_feature.PDB_ins_code ? _pdbx_modification_feature.symmetry 1_555 _pdbx_modification_feature.modified_residue_auth_comp_id CYS _pdbx_modification_feature.modified_residue_auth_asym_id H _pdbx_modification_feature.modified_residue_auth_seq_id 96 _pdbx_modification_feature.modified_residue_PDB_ins_code ? _pdbx_modification_feature.modified_residue_symmetry 1_555 _pdbx_modification_feature.comp_id_linking_atom SG _pdbx_modification_feature.modified_residue_id_linking_atom SG _pdbx_modification_feature.modified_residue_id . _pdbx_modification_feature.ref_pcm_id . _pdbx_modification_feature.ref_comp_id . _pdbx_modification_feature.type None _pdbx_modification_feature.category 'Disulfide bridge' # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 THR 7 C . ? THR 7 L PRO 8 C ? PRO 8 L 1 -5.24 2 VAL 99 C . ? VAL 99 L PRO 100 C ? PRO 100 L 1 3.75 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 4 ? B ? 6 ? C ? 2 ? D ? 4 ? E ? 6 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel B 1 2 ? parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel B 5 6 ? anti-parallel C 1 2 ? anti-parallel D 1 2 ? anti-parallel D 2 3 ? anti-parallel D 3 4 ? anti-parallel E 1 2 ? parallel E 2 3 ? anti-parallel E 3 4 ? anti-parallel E 4 5 ? anti-parallel E 5 6 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 GLN B 3 ? GLN B 6 ? GLN H 3 GLN H 6 A 2 SER B 17 ? SER B 25 ? SER H 17 SER H 25 A 3 THR B 78 ? SER B 84 ? THR H 78 SER H 84 A 4 ALA B 68 ? ASP B 73 ? ALA H 68 ASP H 73 B 1 GLU B 10 ? VAL B 12 ? GLU H 10 VAL H 12 B 2 THR B 112 ? VAL B 116 ? THR H 112 VAL H 116 B 3 ALA B 92 ? TYR B 95 ? ALA H 92 TYR H 95 B 4 ILE B 34 ? GLN B 39 ? ILE H 34 GLN H 39 B 5 GLU B 46 ? ILE B 51 ? GLU H 46 ILE H 51 B 6 THR B 58 ? TYR B 60 ? THR H 58 TYR H 60 C 1 ASN B 98 ? SER B 99 ? ASN H 98 SER H 99 C 2 PHE B 105 ? ASP B 106 ? PHE H 105 ASP H 106 D 1 MET C 4 ? THR C 7 ? MET L 4 THR L 7 D 2 ASP C 17 ? SER C 25 ? ASP L 17 SER L 25 D 3 ASP C 75 ? VAL C 83 ? ASP L 75 VAL L 83 D 4 PHE C 67 ? SER C 72 ? PHE L 67 SER L 72 E 1 SER C 10 ? PRO C 12 ? SER L 10 PRO L 12 E 2 THR C 107 ? GLU C 110 ? THR L 107 GLU L 110 E 3 GLY C 89 ? GLN C 95 ? GLY L 89 GLN L 95 E 4 LEU C 38 ? GLN C 43 ? LEU L 38 GLN L 43 E 5 LYS C 50 ? TYR C 54 ? LYS L 50 TYR L 54 E 6 ASN C 58 ? ARG C 59 ? ASN L 58 ARG L 59 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N GLN B 5 ? N GLN H 5 O THR B 23 ? O THR H 23 A 2 3 N VAL B 18 ? N VAL H 18 O LEU B 83 ? O LEU H 83 A 3 4 O GLN B 82 ? O GLN H 82 N THR B 69 ? N THR H 69 B 1 2 N VAL B 12 ? N VAL H 12 O THR B 115 ? O THR H 115 B 2 3 O LEU B 114 ? O LEU H 114 N ALA B 92 ? N ALA H 92 B 3 4 O TYR B 95 ? O TYR H 95 N VAL B 37 ? N VAL H 37 B 4 5 N LYS B 38 ? N LYS H 38 O GLU B 46 ? O GLU H 46 B 5 6 N LYS B 50 ? N LYS H 50 O LYS B 59 ? O LYS H 59 C 1 2 N ASN B 98 ? N ASN H 98 O ASP B 106 ? O ASP H 106 D 1 2 N THR C 5 ? N THR L 5 O ARG C 24 ? O ARG L 24 D 2 3 N CYS C 23 ? N CYS L 23 O PHE C 76 ? O PHE L 76 D 3 4 O LYS C 79 ? O LYS L 79 N SER C 68 ? N SER L 68 E 1 2 N LEU C 11 ? N LEU L 11 O LYS C 108 ? O LYS L 108 E 2 3 O LEU C 109 ? O LEU L 109 N GLY C 89 ? N GLY L 89 E 3 4 O TYR C 94 ? O TYR L 94 N GLU C 39 ? N GLU L 39 E 4 5 N LEU C 42 ? N LEU L 42 O LYS C 50 ? O LYS L 50 E 5 6 N TYR C 54 ? N TYR L 54 O ASN C 58 ? O ASN L 58 # _pdbx_entry_details.entry_id 3JAU _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_ligand_of_interest ? _pdbx_entry_details.has_protein_modification Y # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 CE1 L HIS 31 ? ? OG L SER 97 ? ? 1.69 2 1 ND1 L HIS 31 ? ? OG L SER 97 ? ? 1.89 3 1 CD2 L HIS 31 ? ? CD2 L TYR 37 ? ? 2.17 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 C A GLY 223 ? ? O A GLY 223 ? ? 1.000 1.232 -0.232 0.016 N 2 1 C A GLY 223 ? ? OXT A GLY 223 ? ? 1.000 1.229 -0.229 0.019 N 3 1 N H GLY 8 ? ? CA H GLY 8 ? ? 1.365 1.456 -0.091 0.015 N 4 1 CG H PHE 64 ? ? CD2 H PHE 64 ? ? 1.484 1.383 0.101 0.015 N 5 1 CD1 H TYR 94 ? ? CE1 H TYR 94 ? ? 1.494 1.389 0.105 0.015 N 6 1 CG H TYR 95 ? ? CD2 H TYR 95 ? ? 1.470 1.387 0.083 0.013 N 7 1 CG H TRP 108 ? ? CD1 H TRP 108 ? ? 1.468 1.363 0.105 0.014 N 8 1 C L ILE 111 ? ? O L ILE 111 ? ? 1.000 1.229 -0.229 0.019 N 9 1 C L ILE 111 ? ? OXT L ILE 111 ? ? 0.999 1.229 -0.230 0.019 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 CA A GLY 223 ? ? C A GLY 223 ? ? O A GLY 223 ? ? 109.02 120.60 -11.58 1.80 N 2 1 CB H ALA 9 ? ? CA H ALA 9 ? ? C H ALA 9 ? ? 99.66 110.10 -10.44 1.50 N 3 1 N H SER 17 ? ? CA H SER 17 ? ? CB H SER 17 ? ? 120.55 110.50 10.05 1.50 N 4 1 N H ASP 66 ? ? CA H ASP 66 ? ? CB H ASP 66 ? ? 122.46 110.60 11.86 1.80 N 5 1 N H ASP 73 ? ? CA H ASP 73 ? ? C H ASP 73 ? ? 93.58 111.00 -17.42 2.70 N 6 1 N H SER 76 ? ? CA H SER 76 ? ? CB H SER 76 ? ? 120.43 110.50 9.93 1.50 N 7 1 CB H TYR 80 ? ? CG H TYR 80 ? ? CD2 H TYR 80 ? ? 127.91 121.00 6.91 0.60 N 8 1 CB H TYR 80 ? ? CG H TYR 80 ? ? CD1 H TYR 80 ? ? 113.07 121.00 -7.93 0.60 N 9 1 CB H TYR 94 ? ? CG H TYR 94 ? ? CD2 H TYR 94 ? ? 116.98 121.00 -4.02 0.60 N 10 1 N H SER 99 ? ? CA H SER 99 ? ? CB H SER 99 ? ? 120.37 110.50 9.87 1.50 N 11 1 CB H TYR 101 ? ? CG H TYR 101 ? ? CD2 H TYR 101 ? ? 116.92 121.00 -4.08 0.60 N 12 1 CB H PHE 103 ? ? CG H PHE 103 ? ? CD2 H PHE 103 ? ? 126.35 120.80 5.55 0.70 N 13 1 CB H PHE 103 ? ? CG H PHE 103 ? ? CD1 H PHE 103 ? ? 111.48 120.80 -9.32 0.70 N 14 1 CB H PHE 105 ? ? CG H PHE 105 ? ? CD1 H PHE 105 ? ? 115.62 120.80 -5.18 0.70 N 15 1 CB H TYR 107 ? ? CG H TYR 107 ? ? CD2 H TYR 107 ? ? 126.63 121.00 5.63 0.60 N 16 1 CB H TYR 107 ? ? CG H TYR 107 ? ? CD1 H TYR 107 ? ? 115.54 121.00 -5.46 0.60 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 HIS A 214 ? ? -107.11 72.63 2 1 ASN H 55 ? ? -143.46 28.10 3 1 ASN H 77 ? ? 81.77 25.63 4 1 SER H 99 ? ? -25.69 136.06 5 1 TYR H 101 ? ? -53.68 -7.61 6 1 TRP H 102 ? ? -86.93 -102.62 7 1 PHE H 103 ? ? -142.40 21.90 8 1 ASP H 104 ? ? -166.70 -119.70 9 1 TYR H 107 ? ? 50.48 141.74 10 1 TYR L 37 ? ? -103.98 74.99 11 1 VAL L 56 ? ? 79.95 -59.98 # _pdbx_validate_peptide_omega.id 1 _pdbx_validate_peptide_omega.PDB_model_num 1 _pdbx_validate_peptide_omega.auth_comp_id_1 TYR _pdbx_validate_peptide_omega.auth_asym_id_1 H _pdbx_validate_peptide_omega.auth_seq_id_1 33 _pdbx_validate_peptide_omega.PDB_ins_code_1 ? _pdbx_validate_peptide_omega.label_alt_id_1 ? _pdbx_validate_peptide_omega.auth_comp_id_2 ILE _pdbx_validate_peptide_omega.auth_asym_id_2 H _pdbx_validate_peptide_omega.auth_seq_id_2 34 _pdbx_validate_peptide_omega.PDB_ins_code_2 ? _pdbx_validate_peptide_omega.label_alt_id_2 ? _pdbx_validate_peptide_omega.omega 148.95 # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 TYR H 95 ? ? 0.132 'SIDE CHAIN' 2 1 PHE H 105 ? ? 0.092 'SIDE CHAIN' # _pdbx_point_symmetry.entry_id 3JAU _pdbx_point_symmetry.Schoenflies_symbol I _pdbx_point_symmetry.circular_symmetry ? _pdbx_point_symmetry.H-M_notation ? # _em_3d_fitting.id 1 _em_3d_fitting.entry_id 3JAU _em_3d_fitting.ref_protocol 'RIGID BODY FIT' _em_3d_fitting.ref_space REAL _em_3d_fitting.overall_b_value ? _em_3d_fitting.target_criteria ? _em_3d_fitting.details 'REFINEMENT PROTOCOL--rigid body' _em_3d_fitting.method ? # _em_3d_fitting_list.3d_fitting_id 1 _em_3d_fitting_list.id 1 _em_3d_fitting_list.pdb_entry_id 3VBS _em_3d_fitting_list.pdb_chain_id D _em_3d_fitting_list.details ? _em_3d_fitting_list.initial_refinement_model_id 1 _em_3d_fitting_list.chain_id ? _em_3d_fitting_list.chain_residue_range ? _em_3d_fitting_list.pdb_chain_residue_range ? _em_3d_fitting_list.source_name PDB _em_3d_fitting_list.type 'experimental model' _em_3d_fitting_list.accession_code 3VBS # _em_3d_reconstruction.entry_id 3JAU _em_3d_reconstruction.id 1 _em_3d_reconstruction.refinement_type 'HALF-MAPS REFINED INDEPENDENTLY' _em_3d_reconstruction.symmetry_type POINT _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.method 'common lines' _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.resolution 4.8 _em_3d_reconstruction.magnification_calibration ? _em_3d_reconstruction.details ;(Single particle details: The particles were boxed using e2boxer.py. CTF fitting was automatically performed using fitctf2.py in jspr, then visually validated and adjusted using EMAN1.9 ctfit program. The gold standard 3D reconstruction procedure was followed using jspr package, with the datasets split into two halves in the beginning.) (Single particle--Applied symmetry: I) ; _em_3d_reconstruction.resolution_method 'FSC 0.143 CUT-OFF' _em_3d_reconstruction.num_particles 2902 _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.algorithm ? # _em_buffer.id 1 _em_buffer.specimen_id 1 _em_buffer.name ? _em_buffer.pH 7.6 _em_buffer.details '0.15 M phosphate buffered saline(PBS) buffer' # _em_entity_assembly.id 1 _em_entity_assembly.name 'EV71 mature viron in complex with the Fab fragment of antibody D5' _em_entity_assembly.type COMPLEX _em_entity_assembly.parent_id 0 _em_entity_assembly.synonym ? _em_entity_assembly.details 'One fab fragment of antibody D5 bind to one protomer of EV71' _em_entity_assembly.entity_id_list ? _em_entity_assembly.source ? _em_entity_assembly.oligomeric_details ? # _em_imaging.entry_id 3JAU _em_imaging.id 1 _em_imaging.mode 'BRIGHT FIELD' _em_imaging.specimen_id 1 _em_imaging.date 2014-10-02 _em_imaging.temperature 91 _em_imaging.microscope_model 'FEI TITAN KRIOS' _em_imaging.nominal_defocus_min 2000 _em_imaging.nominal_defocus_max 3500 _em_imaging.tilt_angle_min 0.0 _em_imaging.tilt_angle_max 0.0 _em_imaging.nominal_cs 0.005 _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.nominal_magnification 37000 _em_imaging.calibrated_magnification ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.accelerating_voltage 300 _em_imaging.details ? _em_imaging.specimen_holder_type ? _em_imaging.specimen_holder_model 'FEI TITAN KRIOS AUTOGRID HOLDER' _em_imaging.recording_temperature_minimum 90 _em_imaging.recording_temperature_maximum 92 _em_imaging.detector_distance 0.0 _em_imaging.electron_beam_tilt_params ? _em_imaging.astigmatism 'Objective lens astigmatism was corrected at 75000 magnification' _em_imaging.citation_id ? # _em_sample_support.id 1 _em_sample_support.specimen_id 1 _em_sample_support.details '200 mesh R1.2x1.3 Quantifoil Cu grid, glow discharged in air' _em_sample_support.film_material ? _em_sample_support.grid_material ? _em_sample_support.grid_mesh_size ? _em_sample_support.grid_type ? _em_sample_support.method ? # _em_virus_entity.id 1 _em_virus_entity.virus_host_category VERTEBRATES _em_virus_entity.entity_assembly_id 1 _em_virus_entity.virus_type VIRION _em_virus_entity.virus_isolate STRAIN _em_virus_entity.empty NO _em_virus_entity.enveloped NO _em_virus_entity.details ? # _em_vitrification.entry_id 3JAU _em_vitrification.id 1 _em_vitrification.details ? _em_vitrification.cryogen_name ETHANE _em_vitrification.humidity 100 _em_vitrification.temp 120 _em_vitrification.instrument 'FEI VITROBOT MARK IV' _em_vitrification.method 'Blot for 2 seconds before plunging' _em_vitrification.time_resolved_state ? _em_vitrification.citation_id ? _em_vitrification.specimen_id 1 _em_vitrification.chamber_temperature ? # _em_experiment.entry_id 3JAU _em_experiment.id 1 _em_experiment.aggregation_state PARTICLE _em_experiment.entity_assembly_id 1 _em_experiment.reconstruction_method 'SINGLE PARTICLE' # _em_single_particle_entity.entry_id 3JAU _em_single_particle_entity.id 1 _em_single_particle_entity.point_symmetry I _em_single_particle_entity.image_processing_id 1 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 GLN N N N N 88 GLN CA C N S 89 GLN C C N N 90 GLN O O N N 91 GLN CB C N N 92 GLN CG C N N 93 GLN CD C N N 94 GLN OE1 O N N 95 GLN NE2 N N N 96 GLN OXT O N N 97 GLN H H N N 98 GLN H2 H N N 99 GLN HA H N N 100 GLN HB2 H N N 101 GLN HB3 H N N 102 GLN HG2 H N N 103 GLN HG3 H N N 104 GLN HE21 H N N 105 GLN HE22 H N N 106 GLN HXT H N N 107 GLU N N N N 108 GLU CA C N S 109 GLU C C N N 110 GLU O O N N 111 GLU CB C N N 112 GLU CG C N N 113 GLU CD C N N 114 GLU OE1 O N N 115 GLU OE2 O N N 116 GLU OXT O N N 117 GLU H H N N 118 GLU H2 H N N 119 GLU HA H N N 120 GLU HB2 H N N 121 GLU HB3 H N N 122 GLU HG2 H N N 123 GLU HG3 H N N 124 GLU HE2 H N N 125 GLU HXT H N N 126 GLY N N N N 127 GLY CA C N N 128 GLY C C N N 129 GLY O O N N 130 GLY OXT O N N 131 GLY H H N N 132 GLY H2 H N N 133 GLY HA2 H N N 134 GLY HA3 H N N 135 GLY HXT H N N 136 HIS N N N N 137 HIS CA C N S 138 HIS C C N N 139 HIS O O N N 140 HIS CB C N N 141 HIS CG C Y N 142 HIS ND1 N Y N 143 HIS CD2 C Y N 144 HIS CE1 C Y N 145 HIS NE2 N Y N 146 HIS OXT O N N 147 HIS H H N N 148 HIS H2 H N N 149 HIS HA H N N 150 HIS HB2 H N N 151 HIS HB3 H N N 152 HIS HD1 H N N 153 HIS HD2 H N N 154 HIS HE1 H N N 155 HIS HE2 H N N 156 HIS HXT H N N 157 ILE N N N N 158 ILE CA C N S 159 ILE C C N N 160 ILE O O N N 161 ILE CB C N S 162 ILE CG1 C N N 163 ILE CG2 C N N 164 ILE CD1 C N N 165 ILE OXT O N N 166 ILE H H N N 167 ILE H2 H N N 168 ILE HA H N N 169 ILE HB H N N 170 ILE HG12 H N N 171 ILE HG13 H N N 172 ILE HG21 H N N 173 ILE HG22 H N N 174 ILE HG23 H N N 175 ILE HD11 H N N 176 ILE HD12 H N N 177 ILE HD13 H N N 178 ILE HXT H N N 179 LEU N N N N 180 LEU CA C N S 181 LEU C C N N 182 LEU O O N N 183 LEU CB C N N 184 LEU CG C N N 185 LEU CD1 C N N 186 LEU CD2 C N N 187 LEU OXT O N N 188 LEU H H N N 189 LEU H2 H N N 190 LEU HA H N N 191 LEU HB2 H N N 192 LEU HB3 H N N 193 LEU HG H N N 194 LEU HD11 H N N 195 LEU HD12 H N N 196 LEU HD13 H N N 197 LEU HD21 H N N 198 LEU HD22 H N N 199 LEU HD23 H N N 200 LEU HXT H N N 201 LYS N N N N 202 LYS CA C N S 203 LYS C C N N 204 LYS O O N N 205 LYS CB C N N 206 LYS CG C N N 207 LYS CD C N N 208 LYS CE C N N 209 LYS NZ N N N 210 LYS OXT O N N 211 LYS H H N N 212 LYS H2 H N N 213 LYS HA H N N 214 LYS HB2 H N N 215 LYS HB3 H N N 216 LYS HG2 H N N 217 LYS HG3 H N N 218 LYS HD2 H N N 219 LYS HD3 H N N 220 LYS HE2 H N N 221 LYS HE3 H N N 222 LYS HZ1 H N N 223 LYS HZ2 H N N 224 LYS HZ3 H N N 225 LYS HXT H N N 226 MET N N N N 227 MET CA C N S 228 MET C C N N 229 MET O O N N 230 MET CB C N N 231 MET CG C N N 232 MET SD S N N 233 MET CE C N N 234 MET OXT O N N 235 MET H H N N 236 MET H2 H N N 237 MET HA H N N 238 MET HB2 H N N 239 MET HB3 H N N 240 MET HG2 H N N 241 MET HG3 H N N 242 MET HE1 H N N 243 MET HE2 H N N 244 MET HE3 H N N 245 MET HXT H N N 246 PHE N N N N 247 PHE CA C N S 248 PHE C C N N 249 PHE O O N N 250 PHE CB C N N 251 PHE CG C Y N 252 PHE CD1 C Y N 253 PHE CD2 C Y N 254 PHE CE1 C Y N 255 PHE CE2 C Y N 256 PHE CZ C Y N 257 PHE OXT O N N 258 PHE H H N N 259 PHE H2 H N N 260 PHE HA H N N 261 PHE HB2 H N N 262 PHE HB3 H N N 263 PHE HD1 H N N 264 PHE HD2 H N N 265 PHE HE1 H N N 266 PHE HE2 H N N 267 PHE HZ H N N 268 PHE HXT H N N 269 PRO N N N N 270 PRO CA C N S 271 PRO C C N N 272 PRO O O N N 273 PRO CB C N N 274 PRO CG C N N 275 PRO CD C N N 276 PRO OXT O N N 277 PRO H H N N 278 PRO HA H N N 279 PRO HB2 H N N 280 PRO HB3 H N N 281 PRO HG2 H N N 282 PRO HG3 H N N 283 PRO HD2 H N N 284 PRO HD3 H N N 285 PRO HXT H N N 286 SER N N N N 287 SER CA C N S 288 SER C C N N 289 SER O O N N 290 SER CB C N N 291 SER OG O N N 292 SER OXT O N N 293 SER H H N N 294 SER H2 H N N 295 SER HA H N N 296 SER HB2 H N N 297 SER HB3 H N N 298 SER HG H N N 299 SER HXT H N N 300 THR N N N N 301 THR CA C N S 302 THR C C N N 303 THR O O N N 304 THR CB C N R 305 THR OG1 O N N 306 THR CG2 C N N 307 THR OXT O N N 308 THR H H N N 309 THR H2 H N N 310 THR HA H N N 311 THR HB H N N 312 THR HG1 H N N 313 THR HG21 H N N 314 THR HG22 H N N 315 THR HG23 H N N 316 THR HXT H N N 317 TRP N N N N 318 TRP CA C N S 319 TRP C C N N 320 TRP O O N N 321 TRP CB C N N 322 TRP CG C Y N 323 TRP CD1 C Y N 324 TRP CD2 C Y N 325 TRP NE1 N Y N 326 TRP CE2 C Y N 327 TRP CE3 C Y N 328 TRP CZ2 C Y N 329 TRP CZ3 C Y N 330 TRP CH2 C Y N 331 TRP OXT O N N 332 TRP H H N N 333 TRP H2 H N N 334 TRP HA H N N 335 TRP HB2 H N N 336 TRP HB3 H N N 337 TRP HD1 H N N 338 TRP HE1 H N N 339 TRP HE3 H N N 340 TRP HZ2 H N N 341 TRP HZ3 H N N 342 TRP HH2 H N N 343 TRP HXT H N N 344 TYR N N N N 345 TYR CA C N S 346 TYR C C N N 347 TYR O O N N 348 TYR CB C N N 349 TYR CG C Y N 350 TYR CD1 C Y N 351 TYR CD2 C Y N 352 TYR CE1 C Y N 353 TYR CE2 C Y N 354 TYR CZ C Y N 355 TYR OH O N N 356 TYR OXT O N N 357 TYR H H N N 358 TYR H2 H N N 359 TYR HA H N N 360 TYR HB2 H N N 361 TYR HB3 H N N 362 TYR HD1 H N N 363 TYR HD2 H N N 364 TYR HE1 H N N 365 TYR HE2 H N N 366 TYR HH H N N 367 TYR HXT H N N 368 VAL N N N N 369 VAL CA C N S 370 VAL C C N N 371 VAL O O N N 372 VAL CB C N N 373 VAL CG1 C N N 374 VAL CG2 C N N 375 VAL OXT O N N 376 VAL H H N N 377 VAL H2 H N N 378 VAL HA H N N 379 VAL HB H N N 380 VAL HG11 H N N 381 VAL HG12 H N N 382 VAL HG13 H N N 383 VAL HG21 H N N 384 VAL HG22 H N N 385 VAL HG23 H N N 386 VAL HXT H N N 387 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLN N CA sing N N 83 GLN N H sing N N 84 GLN N H2 sing N N 85 GLN CA C sing N N 86 GLN CA CB sing N N 87 GLN CA HA sing N N 88 GLN C O doub N N 89 GLN C OXT sing N N 90 GLN CB CG sing N N 91 GLN CB HB2 sing N N 92 GLN CB HB3 sing N N 93 GLN CG CD sing N N 94 GLN CG HG2 sing N N 95 GLN CG HG3 sing N N 96 GLN CD OE1 doub N N 97 GLN CD NE2 sing N N 98 GLN NE2 HE21 sing N N 99 GLN NE2 HE22 sing N N 100 GLN OXT HXT sing N N 101 GLU N CA sing N N 102 GLU N H sing N N 103 GLU N H2 sing N N 104 GLU CA C sing N N 105 GLU CA CB sing N N 106 GLU CA HA sing N N 107 GLU C O doub N N 108 GLU C OXT sing N N 109 GLU CB CG sing N N 110 GLU CB HB2 sing N N 111 GLU CB HB3 sing N N 112 GLU CG CD sing N N 113 GLU CG HG2 sing N N 114 GLU CG HG3 sing N N 115 GLU CD OE1 doub N N 116 GLU CD OE2 sing N N 117 GLU OE2 HE2 sing N N 118 GLU OXT HXT sing N N 119 GLY N CA sing N N 120 GLY N H sing N N 121 GLY N H2 sing N N 122 GLY CA C sing N N 123 GLY CA HA2 sing N N 124 GLY CA HA3 sing N N 125 GLY C O doub N N 126 GLY C OXT sing N N 127 GLY OXT HXT sing N N 128 HIS N CA sing N N 129 HIS N H sing N N 130 HIS N H2 sing N N 131 HIS CA C sing N N 132 HIS CA CB sing N N 133 HIS CA HA sing N N 134 HIS C O doub N N 135 HIS C OXT sing N N 136 HIS CB CG sing N N 137 HIS CB HB2 sing N N 138 HIS CB HB3 sing N N 139 HIS CG ND1 sing Y N 140 HIS CG CD2 doub Y N 141 HIS ND1 CE1 doub Y N 142 HIS ND1 HD1 sing N N 143 HIS CD2 NE2 sing Y N 144 HIS CD2 HD2 sing N N 145 HIS CE1 NE2 sing Y N 146 HIS CE1 HE1 sing N N 147 HIS NE2 HE2 sing N N 148 HIS OXT HXT sing N N 149 ILE N CA sing N N 150 ILE N H sing N N 151 ILE N H2 sing N N 152 ILE CA C sing N N 153 ILE CA CB sing N N 154 ILE CA HA sing N N 155 ILE C O doub N N 156 ILE C OXT sing N N 157 ILE CB CG1 sing N N 158 ILE CB CG2 sing N N 159 ILE CB HB sing N N 160 ILE CG1 CD1 sing N N 161 ILE CG1 HG12 sing N N 162 ILE CG1 HG13 sing N N 163 ILE CG2 HG21 sing N N 164 ILE CG2 HG22 sing N N 165 ILE CG2 HG23 sing N N 166 ILE CD1 HD11 sing N N 167 ILE CD1 HD12 sing N N 168 ILE CD1 HD13 sing N N 169 ILE OXT HXT sing N N 170 LEU N CA sing N N 171 LEU N H sing N N 172 LEU N H2 sing N N 173 LEU CA C sing N N 174 LEU CA CB sing N N 175 LEU CA HA sing N N 176 LEU C O doub N N 177 LEU C OXT sing N N 178 LEU CB CG sing N N 179 LEU CB HB2 sing N N 180 LEU CB HB3 sing N N 181 LEU CG CD1 sing N N 182 LEU CG CD2 sing N N 183 LEU CG HG sing N N 184 LEU CD1 HD11 sing N N 185 LEU CD1 HD12 sing N N 186 LEU CD1 HD13 sing N N 187 LEU CD2 HD21 sing N N 188 LEU CD2 HD22 sing N N 189 LEU CD2 HD23 sing N N 190 LEU OXT HXT sing N N 191 LYS N CA sing N N 192 LYS N H sing N N 193 LYS N H2 sing N N 194 LYS CA C sing N N 195 LYS CA CB sing N N 196 LYS CA HA sing N N 197 LYS C O doub N N 198 LYS C OXT sing N N 199 LYS CB CG sing N N 200 LYS CB HB2 sing N N 201 LYS CB HB3 sing N N 202 LYS CG CD sing N N 203 LYS CG HG2 sing N N 204 LYS CG HG3 sing N N 205 LYS CD CE sing N N 206 LYS CD HD2 sing N N 207 LYS CD HD3 sing N N 208 LYS CE NZ sing N N 209 LYS CE HE2 sing N N 210 LYS CE HE3 sing N N 211 LYS NZ HZ1 sing N N 212 LYS NZ HZ2 sing N N 213 LYS NZ HZ3 sing N N 214 LYS OXT HXT sing N N 215 MET N CA sing N N 216 MET N H sing N N 217 MET N H2 sing N N 218 MET CA C sing N N 219 MET CA CB sing N N 220 MET CA HA sing N N 221 MET C O doub N N 222 MET C OXT sing N N 223 MET CB CG sing N N 224 MET CB HB2 sing N N 225 MET CB HB3 sing N N 226 MET CG SD sing N N 227 MET CG HG2 sing N N 228 MET CG HG3 sing N N 229 MET SD CE sing N N 230 MET CE HE1 sing N N 231 MET CE HE2 sing N N 232 MET CE HE3 sing N N 233 MET OXT HXT sing N N 234 PHE N CA sing N N 235 PHE N H sing N N 236 PHE N H2 sing N N 237 PHE CA C sing N N 238 PHE CA CB sing N N 239 PHE CA HA sing N N 240 PHE C O doub N N 241 PHE C OXT sing N N 242 PHE CB CG sing N N 243 PHE CB HB2 sing N N 244 PHE CB HB3 sing N N 245 PHE CG CD1 doub Y N 246 PHE CG CD2 sing Y N 247 PHE CD1 CE1 sing Y N 248 PHE CD1 HD1 sing N N 249 PHE CD2 CE2 doub Y N 250 PHE CD2 HD2 sing N N 251 PHE CE1 CZ doub Y N 252 PHE CE1 HE1 sing N N 253 PHE CE2 CZ sing Y N 254 PHE CE2 HE2 sing N N 255 PHE CZ HZ sing N N 256 PHE OXT HXT sing N N 257 PRO N CA sing N N 258 PRO N CD sing N N 259 PRO N H sing N N 260 PRO CA C sing N N 261 PRO CA CB sing N N 262 PRO CA HA sing N N 263 PRO C O doub N N 264 PRO C OXT sing N N 265 PRO CB CG sing N N 266 PRO CB HB2 sing N N 267 PRO CB HB3 sing N N 268 PRO CG CD sing N N 269 PRO CG HG2 sing N N 270 PRO CG HG3 sing N N 271 PRO CD HD2 sing N N 272 PRO CD HD3 sing N N 273 PRO OXT HXT sing N N 274 SER N CA sing N N 275 SER N H sing N N 276 SER N H2 sing N N 277 SER CA C sing N N 278 SER CA CB sing N N 279 SER CA HA sing N N 280 SER C O doub N N 281 SER C OXT sing N N 282 SER CB OG sing N N 283 SER CB HB2 sing N N 284 SER CB HB3 sing N N 285 SER OG HG sing N N 286 SER OXT HXT sing N N 287 THR N CA sing N N 288 THR N H sing N N 289 THR N H2 sing N N 290 THR CA C sing N N 291 THR CA CB sing N N 292 THR CA HA sing N N 293 THR C O doub N N 294 THR C OXT sing N N 295 THR CB OG1 sing N N 296 THR CB CG2 sing N N 297 THR CB HB sing N N 298 THR OG1 HG1 sing N N 299 THR CG2 HG21 sing N N 300 THR CG2 HG22 sing N N 301 THR CG2 HG23 sing N N 302 THR OXT HXT sing N N 303 TRP N CA sing N N 304 TRP N H sing N N 305 TRP N H2 sing N N 306 TRP CA C sing N N 307 TRP CA CB sing N N 308 TRP CA HA sing N N 309 TRP C O doub N N 310 TRP C OXT sing N N 311 TRP CB CG sing N N 312 TRP CB HB2 sing N N 313 TRP CB HB3 sing N N 314 TRP CG CD1 doub Y N 315 TRP CG CD2 sing Y N 316 TRP CD1 NE1 sing Y N 317 TRP CD1 HD1 sing N N 318 TRP CD2 CE2 doub Y N 319 TRP CD2 CE3 sing Y N 320 TRP NE1 CE2 sing Y N 321 TRP NE1 HE1 sing N N 322 TRP CE2 CZ2 sing Y N 323 TRP CE3 CZ3 doub Y N 324 TRP CE3 HE3 sing N N 325 TRP CZ2 CH2 doub Y N 326 TRP CZ2 HZ2 sing N N 327 TRP CZ3 CH2 sing Y N 328 TRP CZ3 HZ3 sing N N 329 TRP CH2 HH2 sing N N 330 TRP OXT HXT sing N N 331 TYR N CA sing N N 332 TYR N H sing N N 333 TYR N H2 sing N N 334 TYR CA C sing N N 335 TYR CA CB sing N N 336 TYR CA HA sing N N 337 TYR C O doub N N 338 TYR C OXT sing N N 339 TYR CB CG sing N N 340 TYR CB HB2 sing N N 341 TYR CB HB3 sing N N 342 TYR CG CD1 doub Y N 343 TYR CG CD2 sing Y N 344 TYR CD1 CE1 sing Y N 345 TYR CD1 HD1 sing N N 346 TYR CD2 CE2 doub Y N 347 TYR CD2 HD2 sing N N 348 TYR CE1 CZ doub Y N 349 TYR CE1 HE1 sing N N 350 TYR CE2 CZ sing Y N 351 TYR CE2 HE2 sing N N 352 TYR CZ OH sing N N 353 TYR OH HH sing N N 354 TYR OXT HXT sing N N 355 VAL N CA sing N N 356 VAL N H sing N N 357 VAL N H2 sing N N 358 VAL CA C sing N N 359 VAL CA CB sing N N 360 VAL CA HA sing N N 361 VAL C O doub N N 362 VAL C OXT sing N N 363 VAL CB CG1 sing N N 364 VAL CB CG2 sing N N 365 VAL CB HB sing N N 366 VAL CG1 HG11 sing N N 367 VAL CG1 HG12 sing N N 368 VAL CG1 HG13 sing N N 369 VAL CG2 HG21 sing N N 370 VAL CG2 HG22 sing N N 371 VAL CG2 HG23 sing N N 372 VAL OXT HXT sing N N 373 # _em_ctf_correction.id 1 _em_ctf_correction.details 'Each particle' _em_ctf_correction.type . # _em_entity_assembly_molwt.entity_assembly_id 1 _em_entity_assembly_molwt.id 1 _em_entity_assembly_molwt.experimental_flag NO _em_entity_assembly_molwt.value 8 _em_entity_assembly_molwt.units MEGADALTONS # _em_image_processing.id 1 _em_image_processing.image_recording_id 1 _em_image_processing.details ? # _em_image_recording.avg_electron_dose_per_image 16 _em_image_recording.details ? _em_image_recording.id 1 _em_image_recording.film_or_detector_model 'FEI FALCON II (4k x 4k)' _em_image_recording.imaging_id 1 _em_image_recording.detector_mode ? _em_image_recording.average_exposure_time ? _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged ? _em_image_recording.num_real_images ? # loop_ _em_software.id _em_software.name _em_software.version _em_software.category _em_software.details _em_software.image_processing_id _em_software.fitting_id 1 'UCSF Chimera' ? 'MODEL FITTING' ? ? 1 2 EMAN ? RECONSTRUCTION ? 1 ? 3 jspr ? RECONSTRUCTION ? 1 ? # _em_specimen.experiment_id 1 _em_specimen.id 1 _em_specimen.concentration ? _em_specimen.vitrification_applied YES _em_specimen.staining_applied NO _em_specimen.embedding_applied NO _em_specimen.shadowing_applied NO _em_specimen.details ;0.15 M phosphate buffered saline(PBS) buffer (Stain Details Grids were plunge-frozen into liquid ethane using a FEI Mark IV virtobot, after 2s blotting to remove extra sample.) ; # _em_virus_natural_host.entity_assembly_id 1 _em_virus_natural_host.id 1 _em_virus_natural_host.ncbi_tax_id 9606 _em_virus_natural_host.organism 'Homo sapiens' _em_virus_natural_host.strain ? # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 3VBS # _atom_sites.entry_id 3JAU _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_