HEADER VIRUS/IMMUNE SYSTEM 24-JUN-15 3JAU TITLE THE CRYOEM MAP OF EV71 MATURE VIRON IN COMPLEX WITH THE FAB FRAGMENT TITLE 2 OF ANTIBODY D5 COMPND MOL_ID: 1; COMPND 2 MOLECULE: CAPSID PROTEIN VP1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 207-223; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: HEAVY CHAIN OF FAB FRAGMENT VARIABLE REGION OF ANTIBODY D5; COMPND 7 CHAIN: H; COMPND 8 MOL_ID: 3; COMPND 9 MOLECULE: LIGHT CHAIN OF FAB FRAGMENT VARIABLE REGION OF ANTIBODY D5; COMPND 10 CHAIN: L SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN ENTEROVIRUS; SOURCE 3 ORGANISM_TAXID: 1193974; SOURCE 4 MOL_ID: 2; SOURCE 5 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 6 ORGANISM_COMMON: MOUSE; SOURCE 7 ORGANISM_TAXID: 10090; SOURCE 8 MOL_ID: 3; SOURCE 9 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 10 ORGANISM_COMMON: MOUSE; SOURCE 11 ORGANISM_TAXID: 10090 KEYWDS ENTEROVIRUS 71(EV71), VIRUS-ANTIBODY COMPLEX, BIVALENT BINDING, HIGH KEYWDS 2 RESOLUTION CRYO-EM, VIRUS-IMMUNE SYSTEM COMPLEX EXPDTA ELECTRON MICROSCOPY AUTHOR C.FAN,X.H.YE,Z.Q.KU,T.ZUO,L.L.KONG,C.ZHANG,J.P.SHI,Q.W.LIU,T.CHEN, AUTHOR 2 Y.Y.ZHANG,W.JIANG,L.Q.ZHANG,Z.HUANG,Y.CONG REVDAT 4 09-OCT-24 3JAU 1 REMARK REVDAT 3 18-DEC-19 3JAU 1 REMARK REVDAT 2 26-OCT-16 3JAU 1 SOURCE JRNL REVDAT 1 10-FEB-16 3JAU 0 JRNL AUTH X.H.YE,C.FAN,Z.Q.KU,T.ZUO,L.L.KONG,C.ZHANG,J.P.SHI,Q.W.LIU, JRNL AUTH 2 T.CHEN,Y.Y.ZHANG,W.JIANG,L.Q.ZHANG,Z.HUANG,Y.CONG JRNL TITL STRUCTURAL BASIS FOR RECOGNITION OF HUMAN ENTEROVIRUS 71 BY JRNL TITL 2 A BIVALENT BROADLY NEUTRALIZING MONOCLONAL ANTIBODY JRNL REF PLOS PATHOG. V. 12 05454 2016 JRNL REFN ESSN 1553-7374 JRNL PMID 26938634 JRNL DOI 10.1371/JOURNAL.PPAT.1005454 REMARK 2 REMARK 2 RESOLUTION. 4.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : UCSF CHIMERA, EMAN, JSPR REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : 3VBS REMARK 3 REFINEMENT SPACE : REAL REMARK 3 REFINEMENT PROTOCOL : RIGID BODY FIT REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : REFINEMENT PROTOCOL--RIGID BODY REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 4.800 REMARK 3 NUMBER OF PARTICLES : 2902 REMARK 3 CTF CORRECTION METHOD : NULL REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: (SINGLE PARTICLE DETAILS: THE PARTICLES WERE BOXED REMARK 3 USING E2BOXER.PY. CTF FITTING WAS AUTOMATICALLY PERFORMED USING REMARK 3 FITCTF2.PY IN JSPR, THEN VISUALLY VALIDATED AND ADJUSTED USING REMARK 3 EMAN1.9 CTFIT PROGRAM. THE GOLD STANDARD 3D RECONSTRUCTION REMARK 3 PROCEDURE WAS FOLLOWED USING JSPR PACKAGE, WITH THE DATASETS REMARK 3 SPLIT INTO TWO HALVES IN THE BEGINNING.) (SINGLE PARTICLE-- REMARK 3 APPLIED SYMMETRY: I) REMARK 4 REMARK 4 3JAU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ. REMARK 100 THE DEPOSITION ID IS D_1000160468. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : VITREOUS ICE(CRYO EM) REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : EV71 MATURE VIRON IN COMPLEX REMARK 245 WITH THE FAB FRAGMENT OF REMARK 245 ANTIBODY D5 REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : NULL REMARK 245 SAMPLE SUPPORT DETAILS : 200 MESH R1.2X1.3 QUANTIFOIL CU REMARK 245 GRID, GLOW DISCHARGED IN AIR REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 7.60 REMARK 245 SAMPLE DETAILS : ONE FAB FRAGMENT OF ANTIBODY D5 REMARK 245 BIND TO ONE PROTOMER OF EV71 REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : 02-OCT-14 REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : 91.00 REMARK 245 MICROSCOPE MODEL : FEI TITAN KRIOS REMARK 245 DETECTOR TYPE : FEI FALCON II (4K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 2000.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 3500.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : 0.00 REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : 0.00 REMARK 245 NOMINAL CS : 0.01 REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 1600.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : 37000 REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 THE ASSEMBLY REPRESENTED IN THIS ENTRY HAS REGULAR REMARK 300 ICOSAHEDRAL POINT SYMMETRY (SCHOENFLIES SYMBOL = I). REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, H, L REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 0.309017 0.809017 0.00000 REMARK 350 BIOMT2 2 0.309017 0.809017 -0.500000 0.00000 REMARK 350 BIOMT3 2 -0.809017 0.500000 0.309017 0.00000 REMARK 350 BIOMT1 3 -0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT2 3 0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT3 3 -0.500000 0.309017 -0.809017 0.00000 REMARK 350 BIOMT1 4 -0.309017 0.809017 -0.500000 0.00000 REMARK 350 BIOMT2 4 0.809017 0.500000 0.309017 0.00000 REMARK 350 BIOMT3 4 0.500000 -0.309017 -0.809017 0.00000 REMARK 350 BIOMT1 5 0.500000 0.309017 -0.809017 0.00000 REMARK 350 BIOMT2 5 0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT3 5 0.809017 -0.500000 0.309017 0.00000 REMARK 350 BIOMT1 6 -0.809017 0.500000 0.309017 0.00000 REMARK 350 BIOMT2 6 0.500000 0.309017 0.809017 0.00000 REMARK 350 BIOMT3 6 0.309017 0.809017 -0.500000 0.00000 REMARK 350 BIOMT1 7 -0.500000 0.309017 -0.809017 0.00000 REMARK 350 BIOMT2 7 -0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT3 7 0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT1 8 0.500000 -0.309017 -0.809017 0.00000 REMARK 350 BIOMT2 8 -0.309017 0.809017 -0.500000 0.00000 REMARK 350 BIOMT3 8 0.809017 0.500000 0.309017 0.00000 REMARK 350 BIOMT1 9 0.809017 -0.500000 0.309017 0.00000 REMARK 350 BIOMT2 9 0.500000 0.309017 -0.809017 0.00000 REMARK 350 BIOMT3 9 0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT1 10 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT2 10 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 10 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT1 11 -0.500000 0.309017 -0.809017 0.00000 REMARK 350 BIOMT2 11 0.309017 -0.809017 -0.500000 0.00000 REMARK 350 BIOMT3 11 -0.809017 -0.500000 0.309017 0.00000 REMARK 350 BIOMT1 12 0.500000 -0.309017 -0.809017 0.00000 REMARK 350 BIOMT2 12 0.309017 -0.809017 0.500000 0.00000 REMARK 350 BIOMT3 12 -0.809017 -0.500000 -0.309017 0.00000 REMARK 350 BIOMT1 13 0.809017 -0.500000 0.309017 0.00000 REMARK 350 BIOMT2 13 -0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT3 13 -0.309017 -0.809017 -0.500000 0.00000 REMARK 350 BIOMT1 14 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT2 14 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 14 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT1 15 -0.809017 0.500000 0.309017 0.00000 REMARK 350 BIOMT2 15 -0.500000 -0.309017 -0.809017 0.00000 REMARK 350 BIOMT3 15 -0.309017 -0.809017 0.500000 0.00000 REMARK 350 BIOMT1 16 0.309017 -0.809017 0.500000 0.00000 REMARK 350 BIOMT2 16 -0.809017 -0.500000 -0.309017 0.00000 REMARK 350 BIOMT3 16 0.500000 -0.309017 -0.809017 0.00000 REMARK 350 BIOMT1 17 -0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT2 17 -0.309017 -0.809017 -0.500000 0.00000 REMARK 350 BIOMT3 17 0.809017 -0.500000 0.309017 0.00000 REMARK 350 BIOMT1 18 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 18 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 18 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 19 -0.500000 -0.309017 -0.809017 0.00000 REMARK 350 BIOMT2 19 -0.309017 -0.809017 0.500000 0.00000 REMARK 350 BIOMT3 19 -0.809017 0.500000 0.309017 0.00000 REMARK 350 BIOMT1 20 0.309017 -0.809017 -0.500000 0.00000 REMARK 350 BIOMT2 20 -0.809017 -0.500000 0.309017 0.00000 REMARK 350 BIOMT3 20 -0.500000 0.309017 -0.809017 0.00000 REMARK 350 BIOMT1 21 0.809017 0.500000 0.309017 0.00000 REMARK 350 BIOMT2 21 0.500000 -0.309017 -0.809017 0.00000 REMARK 350 BIOMT3 21 -0.309017 0.809017 -0.500000 0.00000 REMARK 350 BIOMT1 22 0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT2 22 0.809017 -0.500000 0.309017 0.00000 REMARK 350 BIOMT3 22 0.500000 0.309017 -0.809017 0.00000 REMARK 350 BIOMT1 23 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 23 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT3 23 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT1 24 0.309017 0.809017 -0.500000 0.00000 REMARK 350 BIOMT2 24 -0.809017 0.500000 0.309017 0.00000 REMARK 350 BIOMT3 24 0.500000 0.309017 0.809017 0.00000 REMARK 350 BIOMT1 25 0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT2 25 -0.500000 0.309017 -0.809017 0.00000 REMARK 350 BIOMT3 25 -0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT1 26 -0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT2 26 -0.809017 -0.500000 0.309017 0.00000 REMARK 350 BIOMT3 26 0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT1 27 -0.309017 0.809017 -0.500000 0.00000 REMARK 350 BIOMT2 27 -0.809017 -0.500000 -0.309017 0.00000 REMARK 350 BIOMT3 27 -0.500000 0.309017 0.809017 0.00000 REMARK 350 BIOMT1 28 0.500000 0.309017 -0.809017 0.00000 REMARK 350 BIOMT2 28 -0.309017 -0.809017 -0.500000 0.00000 REMARK 350 BIOMT3 28 -0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT1 29 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 29 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 29 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 30 0.500000 0.309017 0.809017 0.00000 REMARK 350 BIOMT2 30 -0.309017 -0.809017 0.500000 0.00000 REMARK 350 BIOMT3 30 0.809017 -0.500000 -0.309017 0.00000 REMARK 350 BIOMT1 31 -0.500000 -0.309017 -0.809017 0.00000 REMARK 350 BIOMT2 31 0.309017 0.809017 -0.500000 0.00000 REMARK 350 BIOMT3 31 0.809017 -0.500000 -0.309017 0.00000 REMARK 350 BIOMT1 32 0.309017 -0.809017 -0.500000 0.00000 REMARK 350 BIOMT2 32 0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT3 32 0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT1 33 0.309017 -0.809017 0.500000 0.00000 REMARK 350 BIOMT2 33 0.809017 0.500000 0.309017 0.00000 REMARK 350 BIOMT3 33 -0.500000 0.309017 0.809017 0.00000 REMARK 350 BIOMT1 34 -0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT2 34 0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT3 34 -0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT1 35 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 35 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 35 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 36 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 36 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT3 36 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT1 37 -0.309017 -0.809017 0.500000 0.00000 REMARK 350 BIOMT2 37 -0.809017 0.500000 0.309017 0.00000 REMARK 350 BIOMT3 37 -0.500000 -0.309017 -0.809017 0.00000 REMARK 350 BIOMT1 38 -0.809017 -0.500000 0.309017 0.00000 REMARK 350 BIOMT2 38 -0.500000 0.309017 -0.809017 0.00000 REMARK 350 BIOMT3 38 0.309017 -0.809017 -0.500000 0.00000 REMARK 350 BIOMT1 39 -0.809017 -0.500000 -0.309017 0.00000 REMARK 350 BIOMT2 39 0.500000 -0.309017 -0.809017 0.00000 REMARK 350 BIOMT3 39 0.309017 -0.809017 0.500000 0.00000 REMARK 350 BIOMT1 40 -0.309017 -0.809017 -0.500000 0.00000 REMARK 350 BIOMT2 40 0.809017 -0.500000 0.309017 0.00000 REMARK 350 BIOMT3 40 -0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT1 41 0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT2 41 0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT3 41 0.309017 -0.809017 -0.500000 0.00000 REMARK 350 BIOMT1 42 0.809017 0.500000 0.309017 0.00000 REMARK 350 BIOMT2 42 -0.500000 0.309017 0.809017 0.00000 REMARK 350 BIOMT3 42 0.309017 -0.809017 0.500000 0.00000 REMARK 350 BIOMT1 43 0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT2 43 -0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT3 43 -0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT1 44 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 44 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT3 44 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT1 45 0.309017 0.809017 -0.500000 0.00000 REMARK 350 BIOMT2 45 0.809017 -0.500000 -0.309017 0.00000 REMARK 350 BIOMT3 45 -0.500000 -0.309017 -0.809017 0.00000 REMARK 350 BIOMT1 46 -0.500000 0.309017 0.809017 0.00000 REMARK 350 BIOMT2 46 -0.309017 0.809017 -0.500000 0.00000 REMARK 350 BIOMT3 46 -0.809017 -0.500000 -0.309017 0.00000 REMARK 350 BIOMT1 47 -0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT2 47 0.500000 0.309017 -0.809017 0.00000 REMARK 350 BIOMT3 47 -0.309017 -0.809017 -0.500000 0.00000 REMARK 350 BIOMT1 48 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT2 48 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 48 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT1 49 0.809017 -0.500000 -0.309017 0.00000 REMARK 350 BIOMT2 49 0.500000 0.309017 0.809017 0.00000 REMARK 350 BIOMT3 49 -0.309017 -0.809017 0.500000 0.00000 REMARK 350 BIOMT1 50 0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT2 50 -0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT3 50 -0.809017 -0.500000 0.309017 0.00000 REMARK 350 BIOMT1 51 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT2 51 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 51 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT1 52 0.809017 -0.500000 -0.309017 0.00000 REMARK 350 BIOMT2 52 -0.500000 -0.309017 -0.809017 0.00000 REMARK 350 BIOMT3 52 0.309017 0.809017 -0.500000 0.00000 REMARK 350 BIOMT1 53 0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT2 53 0.309017 -0.809017 -0.500000 0.00000 REMARK 350 BIOMT3 53 0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT1 54 -0.500000 0.309017 0.809017 0.00000 REMARK 350 BIOMT2 54 0.309017 -0.809017 0.500000 0.00000 REMARK 350 BIOMT3 54 0.809017 0.500000 0.309017 0.00000 REMARK 350 BIOMT1 55 -0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT2 55 -0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT3 55 0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT1 56 -0.309017 -0.809017 0.500000 0.00000 REMARK 350 BIOMT2 56 0.809017 -0.500000 -0.309017 0.00000 REMARK 350 BIOMT3 56 0.500000 0.309017 0.809017 0.00000 REMARK 350 BIOMT1 57 -0.809017 -0.500000 0.309017 0.00000 REMARK 350 BIOMT2 57 0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT3 57 -0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT1 58 -0.809017 -0.500000 -0.309017 0.00000 REMARK 350 BIOMT2 58 -0.500000 0.309017 0.809017 0.00000 REMARK 350 BIOMT3 58 -0.309017 0.809017 -0.500000 0.00000 REMARK 350 BIOMT1 59 -0.309017 -0.809017 -0.500000 0.00000 REMARK 350 BIOMT2 59 -0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT3 59 0.500000 0.309017 -0.809017 0.00000 REMARK 350 BIOMT1 60 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 60 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT3 60 1.000000 0.000000 0.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CE1 HIS L 31 OG SER L 97 1.69 REMARK 500 ND1 HIS L 31 OG SER L 97 1.89 REMARK 500 CD2 HIS L 31 CD2 TYR L 37 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLY A 223 C GLY A 223 O -0.232 REMARK 500 GLY A 223 C GLY A 223 OXT -0.229 REMARK 500 GLY H 8 N GLY H 8 CA -0.091 REMARK 500 PHE H 64 CG PHE H 64 CD2 0.101 REMARK 500 TYR H 94 CD1 TYR H 94 CE1 0.105 REMARK 500 TYR H 95 CG TYR H 95 CD2 0.083 REMARK 500 TRP H 108 CG TRP H 108 CD1 0.105 REMARK 500 ILE L 111 C ILE L 111 O -0.229 REMARK 500 ILE L 111 C ILE L 111 OXT -0.230 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLY A 223 CA - C - O ANGL. DEV. = -11.6 DEGREES REMARK 500 ALA H 9 CB - CA - C ANGL. DEV. = -10.4 DEGREES REMARK 500 SER H 17 N - CA - CB ANGL. DEV. = 10.1 DEGREES REMARK 500 ASP H 66 N - CA - CB ANGL. DEV. = 11.9 DEGREES REMARK 500 ASP H 73 N - CA - C ANGL. DEV. = -17.4 DEGREES REMARK 500 SER H 76 N - CA - CB ANGL. DEV. = 9.9 DEGREES REMARK 500 TYR H 80 CB - CG - CD2 ANGL. DEV. = 6.9 DEGREES REMARK 500 TYR H 80 CB - CG - CD1 ANGL. DEV. = -7.9 DEGREES REMARK 500 TYR H 94 CB - CG - CD2 ANGL. DEV. = -4.0 DEGREES REMARK 500 SER H 99 N - CA - CB ANGL. DEV. = 9.9 DEGREES REMARK 500 TYR H 101 CB - CG - CD2 ANGL. DEV. = -4.1 DEGREES REMARK 500 PHE H 103 CB - CG - CD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 PHE H 103 CB - CG - CD1 ANGL. DEV. = -9.3 DEGREES REMARK 500 PHE H 105 CB - CG - CD1 ANGL. DEV. = -5.2 DEGREES REMARK 500 TYR H 107 CB - CG - CD2 ANGL. DEV. = 5.6 DEGREES REMARK 500 TYR H 107 CB - CG - CD1 ANGL. DEV. = -5.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 214 72.63 -107.11 REMARK 500 ASN H 55 28.10 -143.46 REMARK 500 ASN H 77 25.63 81.77 REMARK 500 SER H 99 136.06 -25.69 REMARK 500 TYR H 101 -7.61 -53.68 REMARK 500 TRP H 102 -102.62 -86.93 REMARK 500 PHE H 103 21.90 -142.40 REMARK 500 ASP H 104 -119.70 -166.70 REMARK 500 TYR H 107 141.74 50.48 REMARK 500 TYR L 37 74.99 -103.98 REMARK 500 VAL L 56 -59.98 79.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 TYR H 33 ILE H 34 148.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 TYR H 95 0.13 SIDE CHAIN REMARK 500 PHE H 105 0.09 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-6366 RELATED DB: EMDB DBREF 3JAU A 207 223 UNP X2L816 X2L816_9ENTO 207 223 DBREF 3JAU H 1 117 PDB 3JAU 3JAU 1 117 DBREF 3JAU L 1 111 PDB 3JAU 3JAU 1 111 SEQRES 1 A 17 GLY TYR PRO THR PHE GLY GLU HIS LYS GLN GLU LYS ASP SEQRES 2 A 17 LEU GLU TYR GLY SEQRES 1 H 117 GLU VAL GLN LEU GLN GLN SER GLY ALA GLU LEU VAL LYS SEQRES 2 H 117 PRO GLY ALA SER VAL LYS LEU SER CYS THR ALA SER GLY SEQRES 3 H 117 PHE ASN ILE LYS ASP THR TYR ILE HIS TRP VAL LYS GLN SEQRES 4 H 117 ARG PRO GLU GLN GLY LEU GLU TRP ILE GLY LYS ILE ASP SEQRES 5 H 117 PRO ALA ASN GLY ASN THR LYS TYR ASP PRO LYS PHE GLN SEQRES 6 H 117 ASP LYS ALA THR ILE THR ALA ASP THR SER SER ASN THR SEQRES 7 H 117 ALA TYR LEU GLN LEU SER SER LEU THR SER GLU ASP THR SEQRES 8 H 117 ALA VAL TYR TYR CYS ALA ASN SER ASN TYR TRP PHE ASP SEQRES 9 H 117 PHE ASP TYR TRP GLY GLN GLY THR THR LEU THR VAL SER SEQRES 1 L 111 ASP VAL LEU MET THR GLN THR PRO LEU SER LEU PRO VAL SEQRES 2 L 111 SER LEU GLY ASP GLN ALA SER ILE SER CYS ARG SER SER SEQRES 3 L 111 GLN SER ILE VAL HIS SER ASN GLY ASN THR TYR LEU GLU SEQRES 4 L 111 TRP TYR LEU GLN LYS PRO GLY GLN SER PRO LYS LEU LEU SEQRES 5 L 111 ILE TYR LYS VAL SER ASN ARG PHE SER GLY VAL PRO ASP SEQRES 6 L 111 ARG PHE SER GLY SER GLY SER GLY THR ASP PHE THR LEU SEQRES 7 L 111 LYS ILE SER ARG VAL GLU ALA ASP ASP VAL GLY VAL TYR SEQRES 8 L 111 TYR CYS TYR GLN GLY SER HIS VAL PRO TYR THR PHE GLY SEQRES 9 L 111 GLY GLY THR LYS LEU GLU ILE HELIX 1 1 GLN A 216 LEU A 220 5 5 HELIX 2 2 PRO H 62 GLN H 65 5 4 HELIX 3 3 THR H 87 THR H 91 5 5 HELIX 4 4 GLU L 84 VAL L 88 5 5 SHEET 1 A 4 GLN H 3 GLN H 6 0 SHEET 2 A 4 SER H 17 SER H 25 -1 O THR H 23 N GLN H 5 SHEET 3 A 4 THR H 78 SER H 84 -1 O LEU H 83 N VAL H 18 SHEET 4 A 4 ALA H 68 ASP H 73 -1 N THR H 69 O GLN H 82 SHEET 1 B 6 GLU H 10 VAL H 12 0 SHEET 2 B 6 THR H 112 VAL H 116 1 O THR H 115 N VAL H 12 SHEET 3 B 6 ALA H 92 TYR H 95 -1 N ALA H 92 O LEU H 114 SHEET 4 B 6 ILE H 34 GLN H 39 -1 N VAL H 37 O TYR H 95 SHEET 5 B 6 GLU H 46 ILE H 51 -1 O GLU H 46 N LYS H 38 SHEET 6 B 6 THR H 58 TYR H 60 -1 O LYS H 59 N LYS H 50 SHEET 1 C 2 ASN H 98 SER H 99 0 SHEET 2 C 2 PHE H 105 ASP H 106 -1 O ASP H 106 N ASN H 98 SHEET 1 D 4 MET L 4 THR L 7 0 SHEET 2 D 4 ASP L 17 SER L 25 -1 O ARG L 24 N THR L 5 SHEET 3 D 4 ASP L 75 VAL L 83 -1 O PHE L 76 N CYS L 23 SHEET 4 D 4 PHE L 67 SER L 72 -1 N SER L 68 O LYS L 79 SHEET 1 E 6 SER L 10 PRO L 12 0 SHEET 2 E 6 THR L 107 GLU L 110 1 O LYS L 108 N LEU L 11 SHEET 3 E 6 GLY L 89 GLN L 95 -1 N GLY L 89 O LEU L 109 SHEET 4 E 6 LEU L 38 GLN L 43 -1 N GLU L 39 O TYR L 94 SHEET 5 E 6 LYS L 50 TYR L 54 -1 O LYS L 50 N LEU L 42 SHEET 6 E 6 ASN L 58 ARG L 59 -1 O ASN L 58 N TYR L 54 SSBOND 1 CYS H 22 CYS H 96 1555 1555 2.01 CISPEP 1 THR L 7 PRO L 8 0 -5.24 CISPEP 2 VAL L 99 PRO L 100 0 3.75 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000