HEADER VIRUS LIKE PARTICLE 13-DEC-15 3JCI TITLE 2.9 ANGSTROM RESOLUTION CRYO-EM 3-D RECONSTRUCTION OF CLOSE-PACKED TITLE 2 PCV2 VIRUS-LIKE PARTICLES COMPND MOL_ID: 1; COMPND 2 MOLECULE: CAPSID PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 42-231 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PORCINE CIRCOVIRUS-2; SOURCE 3 ORGANISM_COMMON: PCV2; SOURCE 4 ORGANISM_TAXID: 85708 KEYWDS DE NOVO INITIAL MODEL, CONSENSUS CRITERION, GOLD-STANDARD FSC, TRUE KEYWDS 2 FSC, CROSS-VALIDATION, VIRUS LIKE PARTICLE EXPDTA ELECTRON MICROSCOPY AUTHOR Z.LIU,F.GUO,F.WANG,T.C.LI,W.JIANG REVDAT 5 21-FEB-24 3JCI 1 REMARK REVDAT 4 18-DEC-19 3JCI 1 SCALE REVDAT 3 18-JUL-18 3JCI 1 REMARK REVDAT 2 17-FEB-16 3JCI 1 JRNL REVDAT 1 03-FEB-16 3JCI 0 JRNL AUTH Z.LIU,F.GUO,F.WANG,T.C.LI,W.JIANG JRNL TITL 2.9 ANGSTROM RESOLUTION CRYO-EM 3D RECONSTRUCTION OF JRNL TITL 2 CLOSE-PACKED VIRUS PARTICLES. JRNL REF STRUCTURE V. 24 319 2016 JRNL REFN ISSN 0969-2126 JRNL PMID 26777413 JRNL DOI 10.1016/J.STR.2015.12.006 REMARK 2 REMARK 2 RESOLUTION. 2.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : EMAN, JSPR REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : NULL REMARK 3 REFINEMENT PROTOCOL : NULL REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : 1.100 REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 2.900 REMARK 3 NUMBER OF PARTICLES : 50352 REMARK 3 CTF CORRECTION METHOD : NULL REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: FOR 3D RECONSTRUCTION, WHOLE DATASETS WERE DIVIDED REMARK 3 INTO EVEN AND ODD HALVES AND THE INITIAL DE NOVO MODELS AND REMARK 3 SUBSEQUENT ITERATIVE REFINEMENTS WERE ALL INDEPENDENTLY REMARK 3 PERFORMED FOR EACH HALF DATASET. PARTICLES WERE SELECTED FROM REMARK 3 SCANNED MICROGRAPH IMAGES USING E2BOXER.PY IN EMAN2. THE TEM REMARK 3 INSTRUMENT CONTRAST TRANSFER FUNCTION PARAMETERS WERE DETERMINED REMARK 3 AUTOMATICALLY USING FITCTF2.PY IN JSPR AND WERE THEN VISUALLY REMARK 3 VALIDATED USING THE EMAN CTFIT PROGRAM. THE DATASETS WERE THEN REMARK 3 DIVIDED INTO TWO SUBSETS (EVEN AND ODD) AND PROCESSED COMPLETELY REMARK 3 INDEPENDENTLY, INCLUDING BOTH DE NOVO INITIAL MODELS AND REMARK 3 REFINEMENTS. THE IMAGES WERE FIRST BINNED 4X TO OBTAIN INITIAL REMARK 3 MODELS AND PARTICLE PARAMETERS ASSUMING ICOSAHEDRAL SYMMETRY. DE REMARK 3 NOVO INITIAL MODELS WERE BUILT USING THE RANDOM MODEL APPROACH. REMARK 3 RANDOM SUBSETS OF PARTICLES WERE ASSIGNED RANDOM INITIAL REMARK 3 ORIENTATIONS AND ITERATIVELY REFINED UNTIL CONVERGENCE. MULTI- REMARK 3 MODEL COMPETITIVE REFINEMENTS WERE USED TO CHOOSE THE WINNING REMARK 3 MODEL (WITH MOST ASSIGNED PARTICLES) AS CORRECTIVE INITIAL REMARK 3 MODELS FOR SUBSEQUENT REFINEMENT. PARTICLES WITH INCONSISTENT/ REMARK 3 UNSTABLE VIEW PARAMETERS IN THE INITIAL REFINEMENTS WERE REMARK 3 EXCLUDED IN FURTHER IMAGE PROCESSING. THE ORIENTATION AND CENTER REMARK 3 PARAMETERS WERE THEN TRANSFERRED TO THE UN-BINNED IMAGES FOR REMARK 3 HIGH-RESOLUTION REFINEMENTS WHICH INCLUDED SIMPLEX METHOD-BASED REMARK 3 ORIENTATION/CENTER OPTIMIZATION AND GRID SEARCH-BASED REFINEMENT REMARK 3 OF DEFOCUS, ASTIGMATISM, BEAM TILT, AND OVERALL AND ANISOTROPIC REMARK 3 MAGNIFICATION OF THE IMAGES. ALL IMAGE REFINEMENT AND REMARK 3 RECONSTRUCTIONS WERE PERFORMED WITH JSPR SOFTWARE THAT WAS BUILT REMARK 3 ON EMAN2 AND EMAN LIBRARY FUNCTIONS AND PROGRAMS. (SINGLE REMARK 3 PARTICLE DETAILS: THE PARTICLES WERE SELECTED USING THE REMARK 3 E2BOXER.PY PROGRAM IN EMAN2. CTF PARAMETERS WERE DETERMINED REMARK 3 USING FITCTF2.PY IN JSPR.) (SINGLE PARTICLE--APPLIED SYMMETRY: I) REMARK 4 REMARK 4 3JCI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-JAN-16. REMARK 100 THE DEPOSITION ID IS D_1000160528. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : VITREOUS ICE (CRYO EM) REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : PORCINE CIRCOVIRUS PCV2 VIRUS REMARK 245 -LIKE PARTICLES; PORCINE REMARK 245 CIRCOVIRUS 2 (PCV2) REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : 3.00 REMARK 245 SAMPLE SUPPORT DETAILS : 400-MESH HOLEY CARBON GRIDS REMARK 245 (1.2/1.3 C-FLAT, PROTOCHIPS) REMARK 245 SAMPLE VITRIFICATION DETAILS : BLOT FOR 5 SECONDS BEFORE REMARK 245 PLUNGING INTO LIQUID ETHANE REMARK 245 (GATAN CRYOPLUNGE 3). REMARK 245 SAMPLE BUFFER : PBS REMARK 245 PH : 7.40 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : 22-FEB-11 REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : 90.00 REMARK 245 MICROSCOPE MODEL : FEI TITAN KRIOS REMARK 245 DETECTOR TYPE : KODAK SO-163 FILM REMARK 245 MINIMUM DEFOCUS (NM) : 200.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 2500.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : 2.70 REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 2500.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : 59000 REMARK 245 CALIBRATED MAGNIFICATION : 587963 REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 THE ASSEMBLY REPRESENTED IN THIS ENTRY HAS REGULAR REMARK 300 ICOSAHEDRAL POINT SYMMETRY (SCHOENFLIES SYMBOL = I). REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.361803 -0.262866 0.894427 0.00000 REMARK 350 BIOMT2 2 0.587785 0.809017 0.000000 0.00000 REMARK 350 BIOMT3 2 -0.723607 0.525731 0.447214 0.00000 REMARK 350 BIOMT1 3 -0.670820 0.162460 0.723607 0.00000 REMARK 350 BIOMT2 3 0.688191 0.500000 0.525731 0.00000 REMARK 350 BIOMT3 3 -0.276393 0.850651 -0.447214 0.00000 REMARK 350 BIOMT1 4 -0.670820 0.688191 -0.276393 0.00000 REMARK 350 BIOMT2 4 0.162460 0.500000 0.850651 0.00000 REMARK 350 BIOMT3 4 0.723607 0.525731 -0.447214 0.00000 REMARK 350 BIOMT1 5 0.361803 0.587785 -0.723607 0.00000 REMARK 350 BIOMT2 5 -0.262866 0.809017 0.525731 0.00000 REMARK 350 BIOMT3 5 0.894427 0.000000 0.447214 0.00000 REMARK 350 BIOMT1 6 -0.861803 -0.425325 -0.276393 0.00000 REMARK 350 BIOMT2 6 -0.425325 0.309017 0.850651 0.00000 REMARK 350 BIOMT3 6 -0.276393 0.850651 -0.447214 0.00000 REMARK 350 BIOMT1 7 -0.361803 -0.262866 -0.894427 0.00000 REMARK 350 BIOMT2 7 -0.587785 0.809017 0.000000 0.00000 REMARK 350 BIOMT3 7 0.723607 0.525731 -0.447214 0.00000 REMARK 350 BIOMT1 8 0.361803 -0.587785 -0.723607 0.00000 REMARK 350 BIOMT2 8 0.262866 0.809017 -0.525731 0.00000 REMARK 350 BIOMT3 8 0.894427 0.000000 0.447214 0.00000 REMARK 350 BIOMT1 9 0.309017 -0.951057 0.000000 0.00000 REMARK 350 BIOMT2 9 0.951057 0.309017 0.000000 0.00000 REMARK 350 BIOMT3 9 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 10 -0.447214 -0.850651 0.276393 0.00000 REMARK 350 BIOMT2 10 0.525731 0.000000 0.850651 0.00000 REMARK 350 BIOMT3 10 -0.723607 0.525731 0.447214 0.00000 REMARK 350 BIOMT1 11 0.809017 0.587785 0.000000 0.00000 REMARK 350 BIOMT2 11 0.587785 -0.809017 0.000000 0.00000 REMARK 350 BIOMT3 11 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 12 0.638197 0.262866 0.723607 0.00000 REMARK 350 BIOMT2 12 -0.262866 -0.809017 0.525731 0.00000 REMARK 350 BIOMT3 12 0.723607 -0.525731 -0.447214 0.00000 REMARK 350 BIOMT1 13 -0.138197 0.425325 0.894427 0.00000 REMARK 350 BIOMT2 13 -0.951057 -0.309017 0.000000 0.00000 REMARK 350 BIOMT3 13 0.276393 -0.850651 0.447214 0.00000 REMARK 350 BIOMT1 14 -0.447214 0.850651 0.276393 0.00000 REMARK 350 BIOMT2 14 -0.525731 0.000000 -0.850651 0.00000 REMARK 350 BIOMT3 14 -0.723607 -0.525731 0.447214 0.00000 REMARK 350 BIOMT1 15 0.138197 0.951057 -0.276393 0.00000 REMARK 350 BIOMT2 15 0.425325 -0.309017 -0.850651 0.00000 REMARK 350 BIOMT3 15 -0.894427 0.000000 -0.447214 0.00000 REMARK 350 BIOMT1 16 -0.947214 -0.162460 0.276393 0.00000 REMARK 350 BIOMT2 16 -0.162460 -0.500000 -0.850651 0.00000 REMARK 350 BIOMT3 16 0.276393 -0.850651 0.447214 0.00000 REMARK 350 BIOMT1 17 -0.638197 0.262866 -0.723607 0.00000 REMARK 350 BIOMT2 17 0.262866 -0.809017 -0.525731 0.00000 REMARK 350 BIOMT3 17 -0.723607 -0.525731 0.447214 0.00000 REMARK 350 BIOMT1 18 0.447214 0.000000 -0.894427 0.00000 REMARK 350 BIOMT2 18 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 18 -0.894427 0.000000 -0.447214 0.00000 REMARK 350 BIOMT1 19 0.809017 -0.587785 0.000000 0.00000 REMARK 350 BIOMT2 19 -0.587785 -0.809017 0.000000 0.00000 REMARK 350 BIOMT3 19 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 20 -0.052786 -0.688191 0.723607 0.00000 REMARK 350 BIOMT2 20 -0.688191 -0.500000 -0.525731 0.00000 REMARK 350 BIOMT3 20 0.723607 -0.525731 -0.447214 0.00000 REMARK 350 BIOMT1 21 -0.138197 -0.425325 0.894427 0.00000 REMARK 350 BIOMT2 21 0.951057 -0.309017 0.000000 0.00000 REMARK 350 BIOMT3 21 0.276393 0.850651 0.447214 0.00000 REMARK 350 BIOMT1 22 -0.947214 0.162460 0.276393 0.00000 REMARK 350 BIOMT2 22 0.162460 -0.500000 0.850651 0.00000 REMARK 350 BIOMT3 22 0.276393 0.850651 0.447214 0.00000 REMARK 350 BIOMT1 23 -0.447214 0.525731 -0.723607 0.00000 REMARK 350 BIOMT2 23 -0.850651 0.000000 0.525731 0.00000 REMARK 350 BIOMT3 23 0.276393 0.850651 0.447214 0.00000 REMARK 350 BIOMT1 24 0.670820 0.162460 -0.723607 0.00000 REMARK 350 BIOMT2 24 -0.688191 0.500000 -0.525731 0.00000 REMARK 350 BIOMT3 24 0.276393 0.850651 0.447214 0.00000 REMARK 350 BIOMT1 25 0.861803 -0.425325 0.276393 0.00000 REMARK 350 BIOMT2 25 0.425325 0.309017 -0.850651 0.00000 REMARK 350 BIOMT3 25 0.276393 0.850651 0.447214 0.00000 REMARK 350 BIOMT1 26 0.052786 0.688191 -0.723607 0.00000 REMARK 350 BIOMT2 26 -0.688191 -0.500000 -0.525731 0.00000 REMARK 350 BIOMT3 26 -0.723607 0.525731 0.447214 0.00000 REMARK 350 BIOMT1 27 0.947214 0.162460 -0.276393 0.00000 REMARK 350 BIOMT2 27 -0.162460 -0.500000 -0.850651 0.00000 REMARK 350 BIOMT3 27 -0.276393 0.850651 -0.447214 0.00000 REMARK 350 BIOMT1 28 0.638197 -0.262866 0.723607 0.00000 REMARK 350 BIOMT2 28 0.262866 -0.809017 -0.525731 0.00000 REMARK 350 BIOMT3 28 0.723607 0.525731 -0.447214 0.00000 REMARK 350 BIOMT1 29 -0.447214 0.000000 0.894427 0.00000 REMARK 350 BIOMT2 29 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 29 0.894427 0.000000 0.447214 0.00000 REMARK 350 BIOMT1 30 -0.809017 0.587785 0.000000 0.00000 REMARK 350 BIOMT2 30 -0.587785 -0.809017 0.000000 0.00000 REMARK 350 BIOMT3 30 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 31 -0.361803 0.262866 -0.894427 0.00000 REMARK 350 BIOMT2 31 0.587785 0.809017 0.000000 0.00000 REMARK 350 BIOMT3 31 0.723607 -0.525731 -0.447214 0.00000 REMARK 350 BIOMT1 32 0.670820 -0.162460 -0.723607 0.00000 REMARK 350 BIOMT2 32 0.688191 0.500000 0.525731 0.00000 REMARK 350 BIOMT3 32 0.276393 -0.850651 0.447214 0.00000 REMARK 350 BIOMT1 33 0.670820 -0.688191 0.276393 0.00000 REMARK 350 BIOMT2 33 0.162460 0.500000 0.850651 0.00000 REMARK 350 BIOMT3 33 -0.723607 -0.525731 0.447214 0.00000 REMARK 350 BIOMT1 34 -0.361803 -0.587785 0.723607 0.00000 REMARK 350 BIOMT2 34 -0.262866 0.809017 0.525731 0.00000 REMARK 350 BIOMT3 34 -0.894427 0.000000 -0.447214 0.00000 REMARK 350 BIOMT1 35 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 35 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 35 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 36 0.447214 -0.525731 0.723607 0.00000 REMARK 350 BIOMT2 36 -0.850651 0.000000 0.525731 0.00000 REMARK 350 BIOMT3 36 -0.276393 -0.850651 -0.447214 0.00000 REMARK 350 BIOMT1 37 -0.670820 -0.162460 0.723607 0.00000 REMARK 350 BIOMT2 37 -0.688191 0.500000 -0.525731 0.00000 REMARK 350 BIOMT3 37 -0.276393 -0.850651 -0.447214 0.00000 REMARK 350 BIOMT1 38 -0.861803 0.425325 -0.276393 0.00000 REMARK 350 BIOMT2 38 0.425325 0.309017 -0.850651 0.00000 REMARK 350 BIOMT3 38 -0.276393 -0.850651 -0.447214 0.00000 REMARK 350 BIOMT1 39 0.138197 0.425325 -0.894427 0.00000 REMARK 350 BIOMT2 39 0.951057 -0.309017 0.000000 0.00000 REMARK 350 BIOMT3 39 -0.276393 -0.850651 -0.447214 0.00000 REMARK 350 BIOMT1 40 0.947214 -0.162460 -0.276393 0.00000 REMARK 350 BIOMT2 40 0.162460 -0.500000 0.850651 0.00000 REMARK 350 BIOMT3 40 -0.276393 -0.850651 -0.447214 0.00000 REMARK 350 BIOMT1 41 -0.138197 0.951057 0.276393 0.00000 REMARK 350 BIOMT2 41 -0.425325 -0.309017 0.850651 0.00000 REMARK 350 BIOMT3 41 0.894427 0.000000 0.447214 0.00000 REMARK 350 BIOMT1 42 0.309017 0.951057 0.000000 0.00000 REMARK 350 BIOMT2 42 -0.951057 0.309017 0.000000 0.00000 REMARK 350 BIOMT3 42 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 43 0.670820 0.688191 0.276393 0.00000 REMARK 350 BIOMT2 43 -0.162460 0.500000 -0.850651 0.00000 REMARK 350 BIOMT3 43 -0.723607 0.525731 0.447214 0.00000 REMARK 350 BIOMT1 44 0.447214 0.525731 0.723607 0.00000 REMARK 350 BIOMT2 44 0.850651 0.000000 -0.525731 0.00000 REMARK 350 BIOMT3 44 -0.276393 0.850651 -0.447214 0.00000 REMARK 350 BIOMT1 45 -0.052786 0.688191 0.723607 0.00000 REMARK 350 BIOMT2 45 0.688191 -0.500000 0.525731 0.00000 REMARK 350 BIOMT3 45 0.723607 0.525731 -0.447214 0.00000 REMARK 350 BIOMT1 46 -0.361803 0.587785 0.723607 0.00000 REMARK 350 BIOMT2 46 0.262866 0.809017 -0.525731 0.00000 REMARK 350 BIOMT3 46 -0.894427 0.000000 -0.447214 0.00000 REMARK 350 BIOMT1 47 -0.309017 0.951057 0.000000 0.00000 REMARK 350 BIOMT2 47 0.951057 0.309017 0.000000 0.00000 REMARK 350 BIOMT3 47 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 48 0.447214 0.850651 -0.276393 0.00000 REMARK 350 BIOMT2 48 0.525731 0.000000 0.850651 0.00000 REMARK 350 BIOMT3 48 0.723607 -0.525731 -0.447214 0.00000 REMARK 350 BIOMT1 49 0.861803 0.425325 0.276393 0.00000 REMARK 350 BIOMT2 49 -0.425325 0.309017 0.850651 0.00000 REMARK 350 BIOMT3 49 0.276393 -0.850651 0.447214 0.00000 REMARK 350 BIOMT1 50 0.361803 0.262866 0.894427 0.00000 REMARK 350 BIOMT2 50 -0.587785 0.809017 0.000000 0.00000 REMARK 350 BIOMT3 50 -0.723607 -0.525731 0.447214 0.00000 REMARK 350 BIOMT1 51 0.447214 -0.850651 -0.276393 0.00000 REMARK 350 BIOMT2 51 -0.525731 0.000000 -0.850651 0.00000 REMARK 350 BIOMT3 51 0.723607 0.525731 -0.447214 0.00000 REMARK 350 BIOMT1 52 -0.138197 -0.951057 0.276393 0.00000 REMARK 350 BIOMT2 52 0.425325 -0.309017 -0.850651 0.00000 REMARK 350 BIOMT3 52 0.894427 0.000000 0.447214 0.00000 REMARK 350 BIOMT1 53 -0.809017 -0.587785 0.000000 0.00000 REMARK 350 BIOMT2 53 0.587785 -0.809017 0.000000 0.00000 REMARK 350 BIOMT3 53 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 54 -0.638197 -0.262866 -0.723607 0.00000 REMARK 350 BIOMT2 54 -0.262866 -0.809017 0.525731 0.00000 REMARK 350 BIOMT3 54 -0.723607 0.525731 0.447214 0.00000 REMARK 350 BIOMT1 55 0.138197 -0.425325 -0.894427 0.00000 REMARK 350 BIOMT2 55 -0.951057 -0.309017 0.000000 0.00000 REMARK 350 BIOMT3 55 -0.276393 0.850651 -0.447214 0.00000 REMARK 350 BIOMT1 56 0.052786 -0.688191 -0.723607 0.00000 REMARK 350 BIOMT2 56 0.688191 -0.500000 0.525731 0.00000 REMARK 350 BIOMT3 56 -0.723607 -0.525731 0.447214 0.00000 REMARK 350 BIOMT1 57 0.138197 -0.951057 -0.276393 0.00000 REMARK 350 BIOMT2 57 -0.425325 -0.309017 0.850651 0.00000 REMARK 350 BIOMT3 57 -0.894427 0.000000 -0.447214 0.00000 REMARK 350 BIOMT1 58 -0.309017 -0.951057 0.000000 0.00000 REMARK 350 BIOMT2 58 -0.951057 0.309017 0.000000 0.00000 REMARK 350 BIOMT3 58 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 59 -0.670820 -0.688191 -0.276393 0.00000 REMARK 350 BIOMT2 59 -0.162460 0.500000 -0.850651 0.00000 REMARK 350 BIOMT3 59 0.723607 -0.525731 -0.447214 0.00000 REMARK 350 BIOMT1 60 -0.447214 -0.525731 -0.723607 0.00000 REMARK 350 BIOMT2 60 0.850651 0.000000 -0.525731 0.00000 REMARK 350 BIOMT3 60 0.276393 -0.850651 0.447214 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 172 72.79 53.69 REMARK 500 THR A 189 -76.31 -59.10 REMARK 500 GLU A 223 79.79 64.58 REMARK 500 PRO A 230 -174.49 -68.48 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY A 197 LEU A 198 -143.48 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-6555 RELATED DB: EMDB DBREF 3JCI A 42 231 UNP B8Y5Y9 B8Y5Y9_PCV2 42 231 SEQRES 1 A 190 ASN GLY ILE PHE ASN THR ARG LEU SER ARG THR PHE GLY SEQRES 2 A 190 TYR THR VAL LYS ALA THR THR VAL ARG THR PRO SER TRP SEQRES 3 A 190 ALA VAL ASP MET MET ARG PHE ASN ILE ASN ASP PHE VAL SEQRES 4 A 190 PRO PRO GLY GLY GLY THR ASN LYS ILE SER ILE PRO PHE SEQRES 5 A 190 GLU TYR TYR ARG ILE ARG LYS VAL LYS VAL GLU PHE TRP SEQRES 6 A 190 PRO CYS SER PRO ILE THR GLN GLY ASP ARG GLY VAL GLY SEQRES 7 A 190 SER THR ALA VAL ILE LEU ASP ASP ASN PHE VAL THR LYS SEQRES 8 A 190 ALA THR ALA LEU THR TYR ASP PRO TYR VAL ASN TYR SER SEQRES 9 A 190 SER ARG HIS THR ILE PRO GLN PRO PHE SER TYR HIS SER SEQRES 10 A 190 ARG TYR PHE THR PRO LYS PRO VAL LEU ASP SER THR ILE SEQRES 11 A 190 ASP TYR PHE GLN PRO ASN ASN LYS ARG ASN GLN LEU TRP SEQRES 12 A 190 LEU ARG LEU GLN THR SER ALA ASN VAL ASP HIS VAL GLY SEQRES 13 A 190 LEU GLY THR ALA PHE GLU ASN SER LYS TYR ASP GLN ASP SEQRES 14 A 190 TYR ASN ILE ARG VAL THR MET TYR VAL GLN PHE ARG GLU SEQRES 15 A 190 PHE ASN LEU LYS ASP PRO PRO LEU SHEET 1 A 4 PHE A 45 VAL A 57 0 SHEET 2 A 4 GLN A 209 PHE A 224 -1 O MET A 217 N LEU A 49 SHEET 3 A 4 PHE A 93 PRO A 107 -1 N LYS A 100 O TYR A 218 SHEET 4 A 4 HIS A 157 PHE A 161 -1 O PHE A 161 N VAL A 101 SHEET 1 B 4 PHE A 45 VAL A 57 0 SHEET 2 B 4 GLN A 209 PHE A 224 -1 O MET A 217 N LEU A 49 SHEET 3 B 4 PHE A 93 PRO A 107 -1 N LYS A 100 O TYR A 218 SHEET 4 B 4 LEU A 185 ARG A 186 -1 O LEU A 185 N TYR A 96 SHEET 1 C 5 ALA A 133 LEU A 136 0 SHEET 2 C 5 TRP A 67 ASN A 75 -1 N TRP A 67 O LEU A 136 SHEET 3 C 5 ASP A 194 GLU A 203 -1 O PHE A 202 N ALA A 68 SHEET 4 C 5 VAL A 118 VAL A 123 -1 N ALA A 122 O GLY A 199 SHEET 5 C 5 HIS A 148 PRO A 151 -1 O HIS A 148 N THR A 121 SHEET 1 D 4 ALA A 133 LEU A 136 0 SHEET 2 D 4 TRP A 67 ASN A 75 -1 N TRP A 67 O LEU A 136 SHEET 3 D 4 ASP A 194 GLU A 203 -1 O PHE A 202 N ALA A 68 SHEET 4 D 4 LYS A 164 PRO A 165 -1 N LYS A 164 O VAL A 196 CISPEP 1 GLN A 152 PRO A 153 0 -15.36 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000