HEADER MEMBRANE PROTEIN 01-MAY-16 3JD8 TITLE CRYO-EM STRUCTURE OF THE FULL-LENGTH HUMAN NPC1 AT 4.4 ANGSTROM COMPND MOL_ID: 1; COMPND 2 MOLECULE: NIEMANN-PICK C1 PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: NPC1; SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 7 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 9 EXPRESSION_SYSTEM_CELL_LINE: HEK-293F; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PCAG KEYWDS MEMBRANE PROTEIN EXPDTA ELECTRON MICROSCOPY AUTHOR X.GONG,H.W.QIAN,X.H.ZHOU,J.P.WU,Q.ZHOU,N.YAN REVDAT 6 29-JUL-20 3JD8 1 COMPND REMARK HETNAM LINK REVDAT 6 2 1 SITE ATOM REVDAT 5 18-DEC-19 3JD8 1 REMARK REVDAT 4 09-OCT-19 3JD8 1 LINK CRYST1 REVDAT 3 13-JUN-18 3JD8 1 SOURCE REMARK REVDAT 2 08-JUN-16 3JD8 1 MODRES REVDAT 1 01-JUN-16 3JD8 0 JRNL AUTH X.GONG,H.W.QIANG,X.H.ZHOU,J.P.WU,Q.ZHOU,N.YAN JRNL TITL THE STRUCTURE OF NIEMANN-PICK C1 PROTEIN JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 4.43 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : UCSF CHIMERA, RELION REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : 5F1B REMARK 3 REFINEMENT SPACE : REAL REMARK 3 REFINEMENT PROTOCOL : RIGID BODY FIT REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : REFINEMENT PROTOCOL--RIGID BODY REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : 1.307 REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 4.430 REMARK 3 NUMBER OF PARTICLES : 102731 REMARK 3 CTF CORRECTION METHOD : NULL REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: (SINGLE PARTICLE DETAILS: IAMGES WERE PROCESSED REMARK 3 USING RELION1.4.) (SINGLE PARTICLE--APPLIED SYMMETRY: C1) REMARK 4 REMARK 4 3JD8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ. REMARK 100 THE DEPOSITION ID IS D_1000160554. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : NIEMANN-PICK C1 PROTEIN REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : 15.00 REMARK 245 SAMPLE SUPPORT DETAILS : QUANTIFOIL R1.2/1.3 COPPER REMARK 245 GRID, 200 MESH REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : 25MM TRIS PH 8.0, 150MM NACL REMARK 245 AND 0.1% DIGITONIN REMARK 245 PH : 8.00 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : 10-JAN-16 REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : 100.00 REMARK 245 MICROSCOPE MODEL : FEI TITAN KRIOS REMARK 245 DETECTOR TYPE : GATAN K2 SUMMIT (4K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 1500.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 3000.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : 0.00 REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : 0.00 REMARK 245 NOMINAL CS : 2.70 REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 50.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : 22500 REMARK 245 CALIBRATED MAGNIFICATION : 38270 REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 ALA A 3 REMARK 465 ARG A 4 REMARK 465 GLY A 5 REMARK 465 LEU A 6 REMARK 465 ALA A 7 REMARK 465 LEU A 8 REMARK 465 GLY A 9 REMARK 465 LEU A 10 REMARK 465 LEU A 11 REMARK 465 LEU A 12 REMARK 465 LEU A 13 REMARK 465 LEU A 14 REMARK 465 LEU A 15 REMARK 465 CYS A 16 REMARK 465 PRO A 17 REMARK 465 ALA A 18 REMARK 465 GLN A 19 REMARK 465 VAL A 20 REMARK 465 PHE A 21 REMARK 465 SER A 22 REMARK 465 ALA A 289 REMARK 465 VAL A 290 REMARK 465 TRP A 291 REMARK 465 CYS A 292 REMARK 465 TYR A 293 REMARK 465 ARG A 294 REMARK 465 LYS A 295 REMARK 465 ARG A 296 REMARK 465 TYR A 297 REMARK 465 PHE A 298 REMARK 465 VAL A 299 REMARK 465 SER A 300 REMARK 465 GLU A 301 REMARK 465 TYR A 302 REMARK 465 THR A 303 REMARK 465 PRO A 304 REMARK 465 ILE A 305 REMARK 465 ASP A 306 REMARK 465 SER A 307 REMARK 465 ASN A 308 REMARK 465 ILE A 309 REMARK 465 ALA A 310 REMARK 465 PHE A 311 REMARK 465 SER A 312 REMARK 465 VAL A 313 REMARK 465 ASN A 314 REMARK 465 ALA A 315 REMARK 465 SER A 316 REMARK 465 ASP A 317 REMARK 465 LYS A 318 REMARK 465 GLY A 319 REMARK 465 GLU A 320 REMARK 465 ALA A 321 REMARK 465 SER A 322 REMARK 465 CYS A 323 REMARK 465 CYS A 324 REMARK 465 ASP A 325 REMARK 465 PRO A 326 REMARK 465 VAL A 327 REMARK 465 SER A 328 REMARK 465 ALA A 329 REMARK 465 LEU A 773 REMARK 465 LEU A 774 REMARK 465 GLN A 775 REMARK 465 ILE A 776 REMARK 465 THR A 777 REMARK 465 CYS A 778 REMARK 465 PHE A 779 REMARK 465 VAL A 780 REMARK 465 SER A 781 REMARK 465 LEU A 782 REMARK 465 LEU A 783 REMARK 465 GLY A 784 REMARK 465 LEU A 785 REMARK 465 ASP A 786 REMARK 465 ILE A 787 REMARK 465 LYS A 788 REMARK 465 ARG A 789 REMARK 465 GLN A 790 REMARK 465 GLU A 791 REMARK 465 LYS A 792 REMARK 465 ASN A 793 REMARK 465 ARG A 794 REMARK 465 LEU A 795 REMARK 465 ASP A 796 REMARK 465 ILE A 797 REMARK 465 PHE A 798 REMARK 465 CYS A 799 REMARK 465 CYS A 800 REMARK 465 VAL A 801 REMARK 465 ARG A 802 REMARK 465 GLY A 803 REMARK 465 ASP A 960 REMARK 465 ASN A 961 REMARK 465 ILE A 962 REMARK 465 THR A 963 REMARK 465 ASP A 964 REMARK 465 GLN A 965 REMARK 465 PHE A 966 REMARK 465 CYS A 967 REMARK 465 ASN A 968 REMARK 465 ALA A 969 REMARK 465 SER A 970 REMARK 465 VAL A 971 REMARK 465 VAL A 972 REMARK 465 ASP A 973 REMARK 465 PRO A 974 REMARK 465 ALA A 975 REMARK 465 CYS A 976 REMARK 465 VAL A 977 REMARK 465 ARG A 978 REMARK 465 CYS A 979 REMARK 465 ARG A 980 REMARK 465 PRO A 981 REMARK 465 LEU A 982 REMARK 465 THR A 983 REMARK 465 GLY A 1252 REMARK 465 PRO A 1253 REMARK 465 SER A 1254 REMARK 465 VAL A 1255 REMARK 465 ASN A 1256 REMARK 465 LYS A 1257 REMARK 465 ALA A 1258 REMARK 465 LYS A 1259 REMARK 465 SER A 1260 REMARK 465 CYS A 1261 REMARK 465 ALA A 1262 REMARK 465 THR A 1263 REMARK 465 GLU A 1264 REMARK 465 GLU A 1265 REMARK 465 ARG A 1266 REMARK 465 TYR A 1267 REMARK 465 LYS A 1268 REMARK 465 GLY A 1269 REMARK 465 THR A 1270 REMARK 465 GLU A 1271 REMARK 465 ARG A 1272 REMARK 465 GLU A 1273 REMARK 465 ARG A 1274 REMARK 465 LEU A 1275 REMARK 465 LEU A 1276 REMARK 465 ASN A 1277 REMARK 465 PHE A 1278 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 TRP A 260 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP A 260 CZ3 CH2 REMARK 470 THR A 261 OG1 CG2 REMARK 470 ILE A 262 CG1 CG2 CD1 REMARK 470 LEU A 263 CG CD1 CD2 REMARK 470 LEU A 265 CG CD1 CD2 REMARK 470 ASP A 266 CG OD1 OD2 REMARK 470 MET A 268 CG SD CE REMARK 470 TYR A 269 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 VAL A 270 CG1 CG2 REMARK 470 ILE A 271 CG1 CG2 CD1 REMARK 470 MET A 272 CG SD CE REMARK 470 TRP A 273 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP A 273 CZ3 CH2 REMARK 470 ILE A 274 CG1 CG2 CD1 REMARK 470 THR A 275 OG1 CG2 REMARK 470 TYR A 276 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 MET A 277 CG SD CE REMARK 470 PHE A 279 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LEU A 280 CG CD1 CD2 REMARK 470 LEU A 281 CG CD1 CD2 REMARK 470 VAL A 282 CG1 CG2 REMARK 470 PHE A 283 CG CD1 CD2 CE1 CE2 CZ REMARK 470 PHE A 284 CG CD1 CD2 CE1 CE2 CZ REMARK 470 PHE A 287 CG CD1 CD2 CE1 CE2 CZ REMARK 470 PHE A 288 CG CD1 CD2 CE1 CE2 CZ REMARK 470 PHE A 331 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLU A 332 CG CD OE1 OE2 REMARK 470 CYS A 334 SG REMARK 470 LEU A 335 CG CD1 CD2 REMARK 470 ARG A 336 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 337 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 338 CG CD1 CD2 REMARK 470 PHE A 339 CG CD1 CD2 CE1 CE2 CZ REMARK 470 THR A 340 OG1 CG2 REMARK 470 ARG A 341 CG CD NE CZ NH1 NH2 REMARK 470 TRP A 342 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP A 342 CZ3 CH2 REMARK 470 SER A 344 OG REMARK 470 PHE A 345 CG CD1 CD2 CE1 CE2 CZ REMARK 470 CYS A 346 SG REMARK 470 VAL A 347 CG1 CG2 REMARK 470 ARG A 348 CG CD NE CZ NH1 NH2 REMARK 470 ASN A 349 CG OD1 ND2 REMARK 470 PRO A 350 CG CD REMARK 470 CYS A 352 SG REMARK 470 VAL A 353 CG1 CG2 REMARK 470 ILE A 354 CG1 CG2 CD1 REMARK 470 PHE A 355 CG CD1 CD2 CE1 CE2 CZ REMARK 470 PHE A 356 CG CD1 CD2 CE1 CE2 CZ REMARK 470 SER A 357 OG REMARK 470 LEU A 358 CG CD1 CD2 REMARK 470 VAL A 359 CG1 CG2 REMARK 470 PHE A 360 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ILE A 361 CG1 CG2 CD1 REMARK 470 THR A 362 OG1 CG2 REMARK 470 CYS A 364 SG REMARK 470 SER A 365 OG REMARK 470 SER A 366 OG REMARK 470 LEU A 368 CG CD1 CD2 REMARK 470 VAL A 369 CG1 CG2 REMARK 470 PHE A 370 CG CD1 CD2 CE1 CE2 CZ REMARK 470 VAL A 371 CG1 CG2 REMARK 470 ARG A 372 CG CD NE CZ NH1 NH2 REMARK 470 VAL A 373 CG1 CG2 REMARK 470 THR A 374 OG1 CG2 REMARK 470 THR A 375 OG1 CG2 REMARK 470 ASN A 376 CG OD1 ND2 REMARK 470 PRO A 377 CG CD REMARK 470 VAL A 378 CG1 CG2 REMARK 470 ASP A 379 CG OD1 OD2 REMARK 470 HIS A 530 CG ND1 CD2 CE1 NE2 REMARK 470 GLU A 616 CG CD OE1 OE2 REMARK 470 SER A 617 OG REMARK 470 LEU A 639 CG CD1 CD2 REMARK 470 HIS A 641 CG ND1 CD2 CE1 NE2 REMARK 470 MET A 642 CG SD CE REMARK 470 LYS A 643 CG CD CE NZ REMARK 470 SER A 644 OG REMARK 470 CYS A 645 SG REMARK 470 ARG A 646 CG CD NE CZ NH1 NH2 REMARK 470 ILE A 658 CG1 CG2 CD1 REMARK 470 LEU A 665 CG CD1 CD2 REMARK 470 SER A 666 OG REMARK 470 SER A 667 OG REMARK 470 VAL A 668 CG1 CG2 REMARK 470 CYS A 670 SG REMARK 470 SER A 671 OG REMARK 470 LEU A 672 CG CD1 CD2 REMARK 470 VAL A 674 CG1 CG2 REMARK 470 PHE A 675 CG CD1 CD2 CE1 CE2 CZ REMARK 470 TYR A 677 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 PRO A 681 CG CD REMARK 470 VAL A 697 CG1 CG2 REMARK 470 VAL A 699 CG1 CG2 REMARK 470 ASP A 700 CG OD1 OD2 REMARK 470 ASN A 701 CG OD1 ND2 REMARK 470 ILE A 702 CG1 CG2 CD1 REMARK 470 PHE A 703 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ILE A 704 CG1 CG2 CD1 REMARK 470 LEU A 705 CG CD1 CD2 REMARK 470 VAL A 706 CG1 CG2 REMARK 470 GLN A 707 CG CD OE1 NE2 REMARK 470 TYR A 709 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLN A 710 CG CD OE1 NE2 REMARK 470 ARG A 711 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 712 CG OD1 OD2 REMARK 470 GLU A 713 CG CD OE1 OE2 REMARK 470 ARG A 714 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 715 CG CD1 CD2 REMARK 470 PRO A 733 CG CD REMARK 470 SER A 734 OG REMARK 470 MET A 735 CG SD CE REMARK 470 PHE A 736 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LEU A 737 CG CD1 CD2 REMARK 470 SER A 738 OG REMARK 470 SER A 739 OG REMARK 470 PHE A 740 CG CD1 CD2 CE1 CE2 CZ REMARK 470 SER A 741 OG REMARK 470 GLU A 742 CG CD OE1 OE2 REMARK 470 THR A 743 OG1 CG2 REMARK 470 VAL A 744 CG1 CG2 REMARK 470 PHE A 746 CG CD1 CD2 CE1 CE2 CZ REMARK 470 PHE A 747 CG CD1 CD2 CE1 CE2 CZ REMARK 470 PHE A 769 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ILE A 770 CG1 CG2 CD1 REMARK 470 ASP A 771 CG OD1 OD2 REMARK 470 PHE A 772 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLU A 805 CG CD OE1 OE2 REMARK 470 ASP A 806 CG OD1 OD2 REMARK 470 THR A 808 OG1 CG2 REMARK 470 SER A 809 OG REMARK 470 VAL A 810 CG1 CG2 REMARK 470 GLN A 811 CG CD OE1 NE2 REMARK 470 SER A 813 OG REMARK 470 GLU A 814 CG CD OE1 OE2 REMARK 470 SER A 815 OG REMARK 470 CYS A 816 SG REMARK 470 LEU A 817 CG CD1 CD2 REMARK 470 PHE A 818 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ARG A 819 CG CD NE CZ NH1 NH2 REMARK 470 PHE A 820 CG CD1 CD2 CE1 CE2 CZ REMARK 470 PHE A 821 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS A 822 CG CD CE NZ REMARK 470 ASN A 823 CG OD1 ND2 REMARK 470 SER A 824 OG REMARK 470 TYR A 825 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 SER A 826 OG REMARK 470 PRO A 827 CG CD REMARK 470 LEU A 828 CG CD1 CD2 REMARK 470 LEU A 829 CG CD1 CD2 REMARK 470 LEU A 830 CG CD1 CD2 REMARK 470 LYS A 831 CG CD CE NZ REMARK 470 ASP A 832 CG OD1 OD2 REMARK 470 TRP A 833 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP A 833 CZ3 CH2 REMARK 470 MET A 834 CG SD CE REMARK 470 ARG A 835 CG CD NE CZ NH1 NH2 REMARK 470 PRO A 836 CG CD REMARK 470 ILE A 837 CG1 CG2 CD1 REMARK 470 VAL A 838 CG1 CG2 REMARK 470 ILE A 839 CG1 CG2 CD1 REMARK 470 ILE A 841 CG1 CG2 CD1 REMARK 470 PHE A 842 CG CD1 CD2 CE1 CE2 CZ REMARK 470 VAL A 843 CG1 CG2 REMARK 470 VAL A 845 CG1 CG2 REMARK 470 LEU A 846 CG CD1 CD2 REMARK 470 SER A 847 OG REMARK 470 PHE A 848 CG CD1 CD2 CE1 CE2 CZ REMARK 470 SER A 849 OG REMARK 470 ILE A 850 CG1 CG2 CD1 REMARK 470 VAL A 852 CG1 CG2 REMARK 470 LEU A 853 CG CD1 CD2 REMARK 470 ASN A 854 CG OD1 ND2 REMARK 470 LYS A 855 CG CD CE NZ REMARK 470 VAL A 856 CG1 CG2 REMARK 470 ASP A 857 CG OD1 OD2 REMARK 470 ILE A 858 CG1 CG2 CD1 REMARK 470 LEU A 860 CG CD1 CD2 REMARK 470 ASP A 861 CG OD1 OD2 REMARK 470 GLN A 862 CG CD OE1 NE2 REMARK 470 SER A 863 OG REMARK 470 LEU A 864 CG CD1 CD2 REMARK 470 SER A 865 OG REMARK 470 MET A 866 CG SD CE REMARK 470 PRO A 867 CG CD REMARK 470 ASP A 868 CG OD1 OD2 REMARK 470 ASP A 869 CG OD1 OD2 REMARK 470 SER A 870 OG REMARK 470 TYR A 871 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 MET A 872 CG SD CE REMARK 470 VAL A 873 CG1 CG2 REMARK 470 ASP A 874 CG OD1 OD2 REMARK 470 TYR A 875 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 PHE A 876 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS A 877 CG CD CE NZ REMARK 470 SER A 878 OG REMARK 470 ILE A 879 CG1 CG2 CD1 REMARK 470 SER A 880 OG REMARK 470 GLN A 881 CG CD OE1 NE2 REMARK 470 TYR A 882 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LEU A 883 CG CD1 CD2 REMARK 470 HIS A 884 CG ND1 CD2 CE1 NE2 REMARK 470 PRO A 887 CG CD REMARK 470 PRO A 888 CG CD REMARK 470 VAL A 889 CG1 CG2 REMARK 470 TYR A 890 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 PHE A 891 CG CD1 CD2 CE1 CE2 CZ REMARK 470 VAL A 892 CG1 CG2 REMARK 470 LEU A 893 CG CD1 CD2 REMARK 470 GLU A 894 CG CD OE1 OE2 REMARK 470 GLU A 895 CG CD OE1 OE2 REMARK 470 HIS A 897 CG ND1 CD2 CE1 NE2 REMARK 470 ASP A 898 CG OD1 OD2 REMARK 470 TYR A 899 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 THR A 900 OG1 CG2 REMARK 470 SER A 901 OG REMARK 470 SER A 902 OG REMARK 470 LYS A 903 CG CD CE NZ REMARK 470 GLN A 905 CG CD OE1 NE2 REMARK 470 ASN A 906 CG OD1 ND2 REMARK 470 MET A 907 CG SD CE REMARK 470 CYS A 909 SG REMARK 470 MET A 912 CG SD CE REMARK 470 CYS A 914 SG REMARK 470 ASN A 915 CG OD1 ND2 REMARK 470 ASN A 916 CG OD1 ND2 REMARK 470 ASP A 917 CG OD1 OD2 REMARK 470 SER A 918 OG REMARK 470 LEU A 919 CG CD1 CD2 REMARK 470 VAL A 920 CG1 CG2 REMARK 470 GLN A 921 CG CD OE1 NE2 REMARK 470 GLN A 922 CG CD OE1 NE2 REMARK 470 ILE A 923 CG1 CG2 CD1 REMARK 470 PHE A 924 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ASN A 925 CG OD1 ND2 REMARK 470 GLN A 928 CG CD OE1 NE2 REMARK 470 LEU A 929 CG CD1 CD2 REMARK 470 ASP A 930 CG OD1 OD2 REMARK 470 ASN A 931 CG OD1 ND2 REMARK 470 TYR A 932 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 THR A 933 OG1 CG2 REMARK 470 ARG A 934 CG CD NE CZ NH1 NH2 REMARK 470 ILE A 935 CG1 CG2 CD1 REMARK 470 PHE A 937 CG CD1 CD2 CE1 CE2 CZ REMARK 470 PRO A 939 CG CD REMARK 470 SER A 940 OG REMARK 470 SER A 941 OG REMARK 470 TRP A 942 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP A 942 CZ3 CH2 REMARK 470 ILE A 943 CG1 CG2 CD1 REMARK 470 ASP A 944 CG OD1 OD2 REMARK 470 ASP A 945 CG OD1 OD2 REMARK 470 TYR A 946 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 PHE A 947 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ASP A 948 CG OD1 OD2 REMARK 470 TRP A 949 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP A 949 CZ3 CH2 REMARK 470 VAL A 950 CG1 CG2 REMARK 470 LYS A 951 CG CD CE NZ REMARK 470 PRO A 952 CG CD REMARK 470 GLN A 953 CG CD OE1 NE2 REMARK 470 SER A 954 OG REMARK 470 SER A 955 OG REMARK 470 CYS A 956 SG REMARK 470 CYS A 957 SG REMARK 470 ARG A 958 CG CD NE CZ NH1 NH2 REMARK 470 VAL A 959 CG1 CG2 REMARK 470 PRO A 984 CG CD REMARK 470 GLU A 985 CG CD OE1 OE2 REMARK 470 LYS A 987 CG CD CE NZ REMARK 470 GLN A 988 CG CD OE1 NE2 REMARK 470 ARG A 989 CG CD NE CZ NH1 NH2 REMARK 470 PRO A 990 CG CD REMARK 470 GLN A 991 CG CD OE1 NE2 REMARK 470 ASP A 994 CG OD1 OD2 REMARK 470 PHE A 995 CG CD1 CD2 CE1 CE2 CZ REMARK 470 MET A 996 CG SD CE REMARK 470 ARG A 997 CG CD NE CZ NH1 NH2 REMARK 470 PHE A 998 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LEU A 999 CG CD1 CD2 REMARK 470 PRO A1000 CG CD REMARK 470 MET A1001 CG SD CE REMARK 470 PHE A1002 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LEU A1003 CG CD1 CD2 REMARK 470 SER A1004 OG REMARK 470 ASP A1005 CG OD1 OD2 REMARK 470 ASN A1006 CG OD1 ND2 REMARK 470 PRO A1007 CG CD REMARK 470 ASN A1008 CG OD1 ND2 REMARK 470 PRO A1009 CG CD REMARK 470 LYS A1010 CG CD CE NZ REMARK 470 CYS A1011 SG REMARK 470 LYS A1013 CG CD CE NZ REMARK 470 HIS A1016 CG ND1 CD2 CE1 NE2 REMARK 470 TYR A1019 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 SER A1020 OG REMARK 470 SER A1021 OG REMARK 470 VAL A1023 CG1 CG2 REMARK 470 ASN A1024 CG OD1 ND2 REMARK 470 ILE A1025 CG1 CG2 CD1 REMARK 470 LEU A1026 CG CD1 CD2 REMARK 470 LEU A1027 CG CD1 CD2 REMARK 470 HIS A1029 CG ND1 CD2 CE1 NE2 REMARK 470 THR A1031 OG1 CG2 REMARK 470 ARG A1032 CG CD NE CZ NH1 NH2 REMARK 470 VAL A1033 CG1 CG2 REMARK 470 TYR A1076 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 CYS A1119 SG REMARK 470 GLU A1120 CG CD OE1 OE2 REMARK 470 LEU A1121 CG CD1 CD2 REMARK 470 TRP A1122 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP A1122 CZ3 CH2 REMARK 470 TRP A1143 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP A1143 CZ3 CH2 REMARK 470 LEU A1144 CG CD1 CD2 REMARK 470 TRP A1145 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP A1145 CZ3 CH2 REMARK 470 ILE A1147 CG1 CG2 CD1 REMARK 470 SER A1148 OG REMARK 470 LEU A1149 CG CD1 CD2 REMARK 470 ASN A1150 CG OD1 ND2 REMARK 470 PHE A1175 CG CD1 CD2 CE1 CE2 CZ REMARK 470 THR A1176 OG1 CG2 REMARK 470 VAL A1177 CG1 CG2 REMARK 470 SER A1178 OG REMARK 470 MET A1179 CG SD CE REMARK 470 LYS A1180 CG CD CE NZ REMARK 470 SER A1182 OG REMARK 470 ARG A1183 CG CD NE CZ NH1 NH2 REMARK 470 LEU A1213 CG CD1 CD2 REMARK 470 PHE A1215 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS A1217 CG CD CE NZ REMARK 470 SER A1218 OG REMARK 470 GLN A1219 CG CD OE1 NE2 REMARK 470 ILE A1220 CG1 CG2 CD1 REMARK 470 PHE A1221 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLN A1222 CG CD OE1 NE2 REMARK 470 ILE A1223 CG1 CG2 CD1 REMARK 470 LEU A1241 CG CD1 CD2 REMARK 470 ILE A1242 CG1 CG2 CD1 REMARK 470 PHE A1243 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LEU A1244 CG CD1 CD2 REMARK 470 PRO A1245 CG CD REMARK 470 VAL A1246 CG1 CG2 REMARK 470 LEU A1247 CG CD1 CD2 REMARK 470 LEU A1248 CG CD1 CD2 REMARK 470 SER A1249 OG REMARK 470 TYR A1250 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ILE A1251 CG1 CG2 CD1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O TRP A 942 CB CYS A 1011 1.34 REMARK 500 CD2 LEU A 656 CB PRO A 755 1.37 REMARK 500 CG1 VAL A 727 CG1 VAL A 1165 1.41 REMARK 500 CD2 LEU A 680 CE2 TYR A 1229 1.47 REMARK 500 O LEU A 656 CD1 LEU A 751 1.48 REMARK 500 N GLN A 407 OG1 THR A 604 1.53 REMARK 500 ND2 ASN A 572 C1 NAG A 1309 1.61 REMARK 500 C1 NAG A 1318 O4 NAG A 1319 1.62 REMARK 500 CD2 LEU A 1106 CG2 ILE A 1131 1.63 REMARK 500 CE1 PHE A 1167 CD1 ILE A 1202 1.64 REMARK 500 CE MET A 631 O LEU A 1204 1.64 REMARK 500 O ILE A 1071 O ASN A 1072 1.65 REMARK 500 ND2 ASN A 524 C1 NAG C 1 1.68 REMARK 500 ND2 ASN A 158 C1 NAG A 1303 1.69 REMARK 500 SG CYS A 240 SG CYS A 247 1.79 REMARK 500 ND2 ASN A 185 C1 NAG A 1319 1.80 REMARK 500 ND2 ASN A 135 C1 NAG A 1322 1.81 REMARK 500 O ILE A 923 CB HIS A 1042 1.83 REMARK 500 CD1 LEU A 656 CG1 ILE A 685 1.85 REMARK 500 ND2 ASN A 598 C1 NAG E 1 1.85 REMARK 500 OD2 ASP A 162 CB SER A 244 1.86 REMARK 500 O GLU A 688 CD PRO A 691 1.86 REMARK 500 O ASP A 620 OG1 THR A 623 1.88 REMARK 500 CZ PHE A 1167 CD1 ILE A 1202 1.89 REMARK 500 O VAL A 856 CB SER A 1048 1.89 REMARK 500 O ALA A 885 O PHE A 1079 1.89 REMARK 500 O GLN A 922 ND1 HIS A 1042 1.93 REMARK 500 CE MET A 1142 O SER A 1148 1.93 REMARK 500 O ALA A 767 CB ASP A 771 1.94 REMARK 500 ND2 ASN A 70 C1 NAG A 1317 1.95 REMARK 500 CE MET A 1133 ND1 HIS A 1239 1.95 REMARK 500 ND2 ASN A 557 C1 NAG D 1 1.96 REMARK 500 O GLY A 1140 CB LEU A 1144 1.96 REMARK 500 ND2 ASN A 459 C1 NAG A 1324 1.97 REMARK 500 O TYR A 1085 N PHE A 1087 1.97 REMARK 500 O LEU A 720 NE2 GLN A 723 1.98 REMARK 500 O ARG A 607 N ASP A 611 1.98 REMARK 500 CB GLN A 1046 OD2 ASP A 1050 1.98 REMARK 500 O SER A 752 CD PRO A 755 1.99 REMARK 500 O LEU A 633 OG SER A 636 1.99 REMARK 500 O VAL A 371 N VAL A 373 2.01 REMARK 500 ND2 ASN A 452 C1 NAG A 1323 2.02 REMARK 500 O MET A 1142 CB ILE A 1147 2.02 REMARK 500 OE1 GLU A 688 OD1 ASP A 721 2.02 REMARK 500 OE1 GLU A 406 CZ3 TRP A 583 2.03 REMARK 500 CD1 LEU A 693 CE2 PHE A 763 2.03 REMARK 500 CA GLN A 407 OG1 THR A 604 2.03 REMARK 500 O ASP A 396 N GLY A 400 2.04 REMARK 500 ND2 ASN A 572 O5 NAG A 1309 2.05 REMARK 500 O SER A 1082 N PHE A 1084 2.05 REMARK 500 REMARK 500 THIS ENTRY HAS 77 CLOSE CONTACTS REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 249 C - N - CD ANGL. DEV. = 18.6 DEGREES REMARK 500 PRO A 253 C - N - CD ANGL. DEV. = 12.8 DEGREES REMARK 500 PRO A 254 C - N - CD ANGL. DEV. = 12.7 DEGREES REMARK 500 PRO A 255 C - N - CD ANGL. DEV. = 12.8 DEGREES REMARK 500 PRO A 257 C - N - CD ANGL. DEV. = 13.0 DEGREES REMARK 500 PRO A 259 C - N - CD ANGL. DEV. = 12.9 DEGREES REMARK 500 PRO A 384 C - N - CD ANGL. DEV. = 12.7 DEGREES REMARK 500 PRO A 401 C - N - CD ANGL. DEV. = 12.7 DEGREES REMARK 500 PRO A 422 C - N - CD ANGL. DEV. = 12.7 DEGREES REMARK 500 PRO A 424 C - N - CD ANGL. DEV. = 18.5 DEGREES REMARK 500 SER A 602 CB - CA - C ANGL. DEV. = -19.0 DEGREES REMARK 500 PRO A 691 C - N - CD ANGL. DEV. = 12.7 DEGREES REMARK 500 PRO A 755 CA - N - CD ANGL. DEV. = -11.7 DEGREES REMARK 500 PRO A 836 N - CA - CB ANGL. DEV. = 7.7 DEGREES REMARK 500 PRO A 887 N - CA - CB ANGL. DEV. = 7.9 DEGREES REMARK 500 ARG A 997 C - N - CA ANGL. DEV. = -16.6 DEGREES REMARK 500 PRO A1009 N - CA - CB ANGL. DEV. = 7.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 28 118.55 -164.81 REMARK 500 CYS A 31 -122.61 -117.07 REMARK 500 CYS A 63 58.92 -141.87 REMARK 500 ASN A 135 16.00 59.86 REMARK 500 ALA A 165 150.62 -48.17 REMARK 500 PRO A 166 99.38 -54.22 REMARK 500 SER A 167 84.63 68.73 REMARK 500 SER A 168 128.76 171.40 REMARK 500 ASN A 169 13.46 -67.60 REMARK 500 LYS A 250 -150.42 -61.92 REMARK 500 GLN A 252 19.68 -147.89 REMARK 500 PRO A 253 62.79 -100.34 REMARK 500 ALA A 258 78.40 172.44 REMARK 500 TRP A 260 -41.93 146.47 REMARK 500 ARG A 348 28.84 -68.02 REMARK 500 PRO A 350 133.27 177.12 REMARK 500 VAL A 371 63.45 79.01 REMARK 500 ARG A 372 46.25 -49.53 REMARK 500 THR A 374 83.85 -45.14 REMARK 500 ASN A 376 -17.37 -147.99 REMARK 500 VAL A 378 -69.89 -106.22 REMARK 500 SER A 382 -3.71 -57.37 REMARK 500 ALA A 383 163.63 72.67 REMARK 500 PRO A 384 -159.52 -100.72 REMARK 500 SER A 385 -151.96 63.19 REMARK 500 SER A 386 -151.14 46.27 REMARK 500 PHE A 399 -10.87 -159.21 REMARK 500 PHE A 403 175.01 133.21 REMARK 500 TYR A 420 115.68 -168.30 REMARK 500 ASP A 458 -126.98 53.86 REMARK 500 TYR A 475 -20.41 -37.05 REMARK 500 LYS A 498 99.75 177.89 REMARK 500 ASP A 501 -155.85 -139.94 REMARK 500 ASP A 508 -152.10 -156.47 REMARK 500 ASN A 524 106.04 -169.51 REMARK 500 SER A 527 -174.88 -66.80 REMARK 500 ASP A 552 -122.95 44.67 REMARK 500 ALA A 605 -97.80 -168.71 REMARK 500 GLU A 606 -46.43 -179.99 REMARK 500 SER A 617 77.62 -59.96 REMARK 500 ASP A 618 -59.77 -157.13 REMARK 500 ALA A 638 -94.79 -34.12 REMARK 500 LEU A 639 -108.50 -63.99 REMARK 500 HIS A 641 -83.26 48.14 REMARK 500 MET A 642 -151.29 -39.30 REMARK 500 LYS A 643 44.12 -98.12 REMARK 500 LEU A 648 -70.73 -45.55 REMARK 500 SER A 667 -16.26 -151.25 REMARK 500 VAL A 668 122.93 76.65 REMARK 500 ALA A 669 168.27 177.56 REMARK 500 REMARK 500 THIS ENTRY HAS 151 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 SER A 602 PHE A 603 -142.67 REMARK 500 PHE A 603 THR A 604 144.40 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 NAG C 1 REMARK 610 NAG D 1 REMARK 610 NAG E 1 REMARK 610 NAG F 1 REMARK 610 NAG A 1303 REMARK 610 NAG A 1309 REMARK 610 NAG A 1317 REMARK 610 NAG A 1318 REMARK 610 NAG A 1319 REMARK 610 NAG A 1321 REMARK 610 NAG A 1322 REMARK 610 NAG A 1323 REMARK 610 NAG A 1324 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-6640 RELATED DB: EMDB DBREF 3JD8 A 1 1267 UNP O15118 NPC1_HUMAN 1 1278 SEQRES 1 A 1278 MET THR ALA ARG GLY LEU ALA LEU GLY LEU LEU LEU LEU SEQRES 2 A 1278 LEU LEU CYS PRO ALA GLN VAL PHE SER GLN SER CYS VAL SEQRES 3 A 1278 TRP TYR GLY GLU CYS GLY ILE ALA TYR GLY ASP LYS ARG SEQRES 4 A 1278 TYR ASN CYS GLU TYR SER GLY PRO PRO LYS PRO LEU PRO SEQRES 5 A 1278 LYS ASP GLY TYR ASP LEU VAL GLN GLU LEU CYS PRO GLY SEQRES 6 A 1278 PHE PHE PHE GLY ASN VAL SER LEU CYS CYS ASP VAL ARG SEQRES 7 A 1278 GLN LEU GLN THR LEU LYS ASP ASN LEU GLN LEU PRO LEU SEQRES 8 A 1278 GLN PHE LEU SER ARG CYS PRO SER CYS PHE TYR ASN LEU SEQRES 9 A 1278 LEU ASN LEU PHE CYS GLU LEU THR CYS SER PRO ARG GLN SEQRES 10 A 1278 SER GLN PHE LEU ASN VAL THR ALA THR GLU ASP TYR VAL SEQRES 11 A 1278 ASP PRO VAL THR ASN GLN THR LYS THR ASN VAL LYS GLU SEQRES 12 A 1278 LEU GLN TYR TYR VAL GLY GLN SER PHE ALA ASN ALA MET SEQRES 13 A 1278 TYR ASN ALA CYS ARG ASP VAL GLU ALA PRO SER SER ASN SEQRES 14 A 1278 ASP LYS ALA LEU GLY LEU LEU CYS GLY LYS ASP ALA ASP SEQRES 15 A 1278 ALA CYS ASN ALA THR ASN TRP ILE GLU TYR MET PHE ASN SEQRES 16 A 1278 LYS ASP ASN GLY GLN ALA PRO PHE THR ILE THR PRO VAL SEQRES 17 A 1278 PHE SER ASP PHE PRO VAL HIS GLY MET GLU PRO MET ASN SEQRES 18 A 1278 ASN ALA THR LYS GLY CYS ASP GLU SER VAL ASP GLU VAL SEQRES 19 A 1278 THR ALA PRO CYS SER CYS GLN ASP CYS SER ILE VAL CYS SEQRES 20 A 1278 GLY PRO LYS PRO GLN PRO PRO PRO PRO PRO ALA PRO TRP SEQRES 21 A 1278 THR ILE LEU GLY LEU ASP ALA MET TYR VAL ILE MET TRP SEQRES 22 A 1278 ILE THR TYR MET ALA PHE LEU LEU VAL PHE PHE GLY ALA SEQRES 23 A 1278 PHE PHE ALA VAL TRP CYS TYR ARG LYS ARG TYR PHE VAL SEQRES 24 A 1278 SER GLU TYR THR PRO ILE ASP SER ASN ILE ALA PHE SER SEQRES 25 A 1278 VAL ASN ALA SER ASP LYS GLY GLU ALA SER CYS CYS ASP SEQRES 26 A 1278 PRO VAL SER ALA ALA PHE GLU GLY CYS LEU ARG ARG LEU SEQRES 27 A 1278 PHE THR ARG TRP GLY SER PHE CYS VAL ARG ASN PRO GLY SEQRES 28 A 1278 CYS VAL ILE PHE PHE SER LEU VAL PHE ILE THR ALA CYS SEQRES 29 A 1278 SER SER GLY LEU VAL PHE VAL ARG VAL THR THR ASN PRO SEQRES 30 A 1278 VAL ASP LEU TRP SER ALA PRO SER SER GLN ALA ARG LEU SEQRES 31 A 1278 GLU LYS GLU TYR PHE ASP GLN HIS PHE GLY PRO PHE PHE SEQRES 32 A 1278 ARG THR GLU GLN LEU ILE ILE ARG ALA PRO LEU THR ASP SEQRES 33 A 1278 LYS HIS ILE TYR GLN PRO TYR PRO SER GLY ALA ASP VAL SEQRES 34 A 1278 PRO PHE GLY PRO PRO LEU ASP ILE GLN ILE LEU HIS GLN SEQRES 35 A 1278 VAL LEU ASP LEU GLN ILE ALA ILE GLU ASN ILE THR ALA SEQRES 36 A 1278 SER TYR ASP ASN GLU THR VAL THR LEU GLN ASP ILE CYS SEQRES 37 A 1278 LEU ALA PRO LEU SER PRO TYR ASN THR ASN CYS THR ILE SEQRES 38 A 1278 LEU SER VAL LEU ASN TYR PHE GLN ASN SER HIS SER VAL SEQRES 39 A 1278 LEU ASP HIS LYS LYS GLY ASP ASP PHE PHE VAL TYR ALA SEQRES 40 A 1278 ASP TYR HIS THR HIS PHE LEU TYR CYS VAL ARG ALA PRO SEQRES 41 A 1278 ALA SER LEU ASN ASP THR SER LEU LEU HIS ASP PRO CYS SEQRES 42 A 1278 LEU GLY THR PHE GLY GLY PRO VAL PHE PRO TRP LEU VAL SEQRES 43 A 1278 LEU GLY GLY TYR ASP ASP GLN ASN TYR ASN ASN ALA THR SEQRES 44 A 1278 ALA LEU VAL ILE THR PHE PRO VAL ASN ASN TYR TYR ASN SEQRES 45 A 1278 ASP THR GLU LYS LEU GLN ARG ALA GLN ALA TRP GLU LYS SEQRES 46 A 1278 GLU PHE ILE ASN PHE VAL LYS ASN TYR LYS ASN PRO ASN SEQRES 47 A 1278 LEU THR ILE SER PHE THR ALA GLU ARG SER ILE GLU ASP SEQRES 48 A 1278 GLU LEU ASN ARG GLU SER ASP SER ASP VAL PHE THR VAL SEQRES 49 A 1278 VAL ILE SER TYR ALA ILE MET PHE LEU TYR ILE SER LEU SEQRES 50 A 1278 ALA LEU GLY HIS MET LYS SER CYS ARG ARG LEU LEU VAL SEQRES 51 A 1278 ASP SER LYS VAL SER LEU GLY ILE ALA GLY ILE LEU ILE SEQRES 52 A 1278 VAL LEU SER SER VAL ALA CYS SER LEU GLY VAL PHE SER SEQRES 53 A 1278 TYR ILE GLY LEU PRO LEU THR LEU ILE VAL ILE GLU VAL SEQRES 54 A 1278 ILE PRO PHE LEU VAL LEU ALA VAL GLY VAL ASP ASN ILE SEQRES 55 A 1278 PHE ILE LEU VAL GLN ALA TYR GLN ARG ASP GLU ARG LEU SEQRES 56 A 1278 GLN GLY GLU THR LEU ASP GLN GLN LEU GLY ARG VAL LEU SEQRES 57 A 1278 GLY GLU VAL ALA PRO SER MET PHE LEU SER SER PHE SER SEQRES 58 A 1278 GLU THR VAL ALA PHE PHE LEU GLY ALA LEU SER VAL MET SEQRES 59 A 1278 PRO ALA VAL HIS THR PHE SER LEU PHE ALA GLY LEU ALA SEQRES 60 A 1278 VAL PHE ILE ASP PHE LEU LEU GLN ILE THR CYS PHE VAL SEQRES 61 A 1278 SER LEU LEU GLY LEU ASP ILE LYS ARG GLN GLU LYS ASN SEQRES 62 A 1278 ARG LEU ASP ILE PHE CYS CYS VAL ARG GLY ALA GLU ASP SEQRES 63 A 1278 GLY THR SER VAL GLN ALA SER GLU SER CYS LEU PHE ARG SEQRES 64 A 1278 PHE PHE LYS ASN SER TYR SER PRO LEU LEU LEU LYS ASP SEQRES 65 A 1278 TRP MET ARG PRO ILE VAL ILE ALA ILE PHE VAL GLY VAL SEQRES 66 A 1278 LEU SER PHE SER ILE ALA VAL LEU ASN LYS VAL ASP ILE SEQRES 67 A 1278 GLY LEU ASP GLN SER LEU SER MET PRO ASP ASP SER TYR SEQRES 68 A 1278 MET VAL ASP TYR PHE LYS SER ILE SER GLN TYR LEU HIS SEQRES 69 A 1278 ALA GLY PRO PRO VAL TYR PHE VAL LEU GLU GLU GLY HIS SEQRES 70 A 1278 ASP TYR THR SER SER LYS GLY GLN ASN MET VAL CYS GLY SEQRES 71 A 1278 GLY MET GLY CYS ASN ASN ASP SER LEU VAL GLN GLN ILE SEQRES 72 A 1278 PHE ASN ALA ALA GLN LEU ASP ASN TYR THR ARG ILE GLY SEQRES 73 A 1278 PHE ALA PRO SER SER TRP ILE ASP ASP TYR PHE ASP TRP SEQRES 74 A 1278 VAL LYS PRO GLN SER SER CYS CYS ARG VAL ASP ASN ILE SEQRES 75 A 1278 THR ASP GLN PHE CYS ASN ALA SER VAL VAL ASP PRO ALA SEQRES 76 A 1278 CYS VAL ARG CYS ARG PRO LEU THR PRO GLU GLY LYS GLN SEQRES 77 A 1278 ARG PRO GLN GLY GLY ASP PHE MET ARG PHE LEU PRO MET SEQRES 78 A 1278 PHE LEU SER ASP ASN PRO ASN PRO LYS CYS GLY LYS GLY SEQRES 79 A 1278 GLY HIS ALA ALA TYR SER SER ALA VAL ASN ILE LEU LEU SEQRES 80 A 1278 GLY HIS GLY THR ARG VAL GLY ALA THR TYR PHE MET THR SEQRES 81 A 1278 TYR HIS THR VAL LEU GLN THR SER ALA ASP PHE ILE ASP SEQRES 82 A 1278 ALA LEU LYS LYS ALA ARG LEU ILE ALA SER ASN VAL THR SEQRES 83 A 1278 GLU THR MET GLY ILE ASN GLY SER ALA TYR ARG VAL PHE SEQRES 84 A 1278 PRO TYR SER VAL PHE TYR VAL PHE TYR GLU GLN TYR LEU SEQRES 85 A 1278 THR ILE ILE ASP ASP THR ILE PHE ASN LEU GLY VAL SER SEQRES 86 A 1278 LEU GLY ALA ILE PHE LEU VAL THR MET VAL LEU LEU GLY SEQRES 87 A 1278 CYS GLU LEU TRP SER ALA VAL ILE MET CYS ALA THR ILE SEQRES 88 A 1278 ALA MET VAL LEU VAL ASN MET PHE GLY VAL MET TRP LEU SEQRES 89 A 1278 TRP GLY ILE SER LEU ASN ALA VAL SER LEU VAL ASN LEU SEQRES 90 A 1278 VAL MET SER CYS GLY ILE SER VAL GLU PHE CYS SER HIS SEQRES 91 A 1278 ILE THR ARG ALA PHE THR VAL SER MET LYS GLY SER ARG SEQRES 92 A 1278 VAL GLU ARG ALA GLU GLU ALA LEU ALA HIS MET GLY SER SEQRES 93 A 1278 SER VAL PHE SER GLY ILE THR LEU THR LYS PHE GLY GLY SEQRES 94 A 1278 ILE VAL VAL LEU ALA PHE ALA LYS SER GLN ILE PHE GLN SEQRES 95 A 1278 ILE PHE TYR PHE ARG MET TYR LEU ALA MET VAL LEU LEU SEQRES 96 A 1278 GLY ALA THR HIS GLY LEU ILE PHE LEU PRO VAL LEU LEU SEQRES 97 A 1278 SER TYR ILE GLY PRO SER VAL ASN LYS ALA LYS SER CYS SEQRES 98 A 1278 ALA THR GLU GLU ARG TYR LYS GLY THR GLU ARG GLU ARG SEQRES 99 A 1278 LEU LEU ASN PHE MODRES 3JD8 ASN A 122 ASN GLYCOSYLATION SITE MODRES 3JD8 ASN A 222 ASN GLYCOSYLATION SITE MODRES 3JD8 ASN A 1064 ASN GLYCOSYLATION SITE HET NAG B 1 14 HET NAG B 2 14 HET NAG C 1 14 HET NAG C 2 14 HET NAG D 1 14 HET NAG D 2 14 HET BMA D 3 11 HET NAG E 1 14 HET NAG E 2 14 HET NAG F 1 14 HET NAG F 2 14 HET BMA F 3 11 HET MAN F 4 11 HET NAG A1303 14 HET NAG A1309 14 HET NAG A1316 14 HET NAG A1317 14 HET NAG A1318 14 HET NAG A1319 14 HET NAG A1320 14 HET NAG A1321 14 HET NAG A1322 14 HET NAG A1323 14 HET NAG A1324 14 HET CLR A1325 28 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM MAN ALPHA-D-MANNOPYRANOSE HETNAM CLR CHOLESTEROL FORMUL 2 NAG 21(C8 H15 N O6) FORMUL 4 BMA 2(C6 H12 O6) FORMUL 6 MAN C6 H12 O6 FORMUL 18 CLR C27 H46 O HELIX 1 1 PRO A 52 ASP A 54 5 3 HELIX 2 2 GLY A 55 CYS A 63 1 9 HELIX 3 3 PRO A 64 PHE A 67 5 4 HELIX 4 4 ASP A 76 ASN A 86 1 11 HELIX 5 5 LEU A 87 SER A 95 1 9 HELIX 6 6 CYS A 97 SER A 114 1 18 HELIX 7 7 ARG A 116 GLN A 119 5 4 HELIX 8 8 GLY A 149 ARG A 161 1 13 HELIX 9 9 ALA A 172 CYS A 177 1 6 HELIX 10 10 ASN A 185 PHE A 194 1 10 HELIX 11 11 ASN A 195 GLY A 199 5 5 HELIX 12 12 TRP A 260 PHE A 288 1 29 HELIX 13 13 PHE A 331 ARG A 348 1 18 HELIX 14 14 GLY A 351 VAL A 369 1 19 HELIX 15 15 GLN A 387 GLY A 400 1 14 HELIX 16 16 GLY A 432 LEU A 435 5 4 HELIX 17 17 ASP A 436 ASN A 452 1 17 HELIX 18 18 LEU A 464 CYS A 468 1 5 HELIX 19 19 SER A 483 GLN A 489 5 7 HELIX 20 20 SER A 491 HIS A 497 1 7 HELIX 21 21 HIS A 510 VAL A 517 1 8 HELIX 22 22 PHE A 542 LEU A 545 5 4 HELIX 23 23 ASN A 554 ALA A 558 5 5 HELIX 24 24 ASP A 573 TYR A 594 1 22 HELIX 25 25 GLU A 606 SER A 617 1 12 HELIX 26 26 ASP A 618 ALA A 638 1 21 HELIX 27 27 SER A 644 SER A 666 1 23 HELIX 28 28 GLY A 673 GLY A 698 1 26 HELIX 29 29 LEU A 705 ARG A 714 1 10 HELIX 30 30 GLN A 716 ALA A 732 1 17 HELIX 31 31 SER A 741 PHE A 772 1 32 HELIX 32 32 GLU A 805 LEU A 830 1 26 HELIX 33 33 TRP A 833 ALA A 851 1 19 HELIX 34 34 LEU A 864 PHE A 876 1 13 HELIX 35 37 LYS A 987 PHE A 995 1 9 HELIX 36 38 ARG A 997 ASP A 1005 1 9 HELIX 37 39 THR A 1047 MET A 1069 1 23 HELIX 38 40 PHE A 1084 GLU A 1089 1 6 HELIX 39 41 GLN A 1090 LEU A 1092 5 3 HELIX 40 42 THR A 1093 THR A 1113 1 21 HELIX 41 43 TRP A 1122 LEU A 1144 1 23 HELIX 42 44 ASN A 1150 ALA A 1174 1 25 HELIX 43 45 VAL A 1184 ALA A 1214 1 31 SHEET 1 A 2 TRP A 27 TYR A 35 0 SHEET 2 A 2 LYS A 38 GLU A 43 -1 O LYS A 38 N ALA A 34 SHEET 1 B 2 LYS A 49 PRO A 50 0 SHEET 2 B 2 SER A 72 LEU A 73 -1 O LEU A 73 N LYS A 49 SHEET 1 C 3 LEU A 121 VAL A 130 0 SHEET 2 C 3 THR A 137 VAL A 148 -1 O LYS A 138 N TYR A 129 SHEET 3 C 3 THR A 204 PHE A 209 1 O VAL A 208 N VAL A 148 SHEET 1 D 4 LEU A 547 GLY A 548 0 SHEET 2 D 4 ALA A 560 VAL A 567 -1 O ALA A 560 N GLY A 548 SHEET 3 D 4 ARG A 404 ARG A 411 -1 N ILE A 410 O LEU A 561 SHEET 4 D 4 THR A 600 SER A 602 -1 O THR A 600 N ARG A 411 SHEET 1 E 2 HIS A 418 ILE A 419 0 SHEET 2 E 2 PRO A 430 PHE A 431 -1 O PHE A 431 N HIS A 418 SHEET 1 F 2 THR A 454 TYR A 457 0 SHEET 2 F 2 GLU A 460 THR A 463 -1 O VAL A 462 N ALA A 455 SHEET 1 G 2 LYS A 499 GLY A 500 0 SHEET 2 G 2 VAL A 505 ALA A 507 -1 O TYR A 506 N LYS A 499 SSBOND 1 CYS A 25 CYS A 74 1555 1555 2.05 SSBOND 2 CYS A 31 CYS A 42 1555 1555 2.05 SSBOND 3 CYS A 63 CYS A 109 1555 1555 2.05 SSBOND 4 CYS A 75 CYS A 113 1555 1555 2.06 SSBOND 5 CYS A 97 CYS A 238 1555 1555 2.04 SSBOND 6 CYS A 100 CYS A 160 1555 1555 2.04 SSBOND 7 CYS A 177 CYS A 184 1555 1555 2.08 SSBOND 8 CYS A 227 CYS A 243 1555 1555 1.91 SSBOND 9 CYS A 468 CYS A 479 1555 1555 2.10 SSBOND 10 CYS A 516 CYS A 533 1555 1555 2.07 LINK ND2 ASN A 122 C1 NAG A1316 1555 1555 1.41 LINK ND2 ASN A 222 C1 NAG B 1 1555 1555 1.44 LINK ND2 ASN A1064 C1 NAG A1320 1555 1555 1.44 LINK O4 NAG B 1 C1 NAG B 2 1555 1555 1.44 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.44 LINK O4 NAG D 1 C1 NAG D 2 1555 1555 1.44 LINK O4 NAG D 2 C1 BMA D 3 1555 1555 1.44 LINK O4 NAG E 1 C1 NAG E 2 1555 1555 1.39 LINK O4 NAG F 1 C1 NAG F 2 1555 1555 1.44 LINK O4 NAG F 2 C1 BMA F 3 1555 1555 1.45 LINK O6 BMA F 3 C1 MAN F 4 1555 1555 1.44 CISPEP 1 GLY A 248 PRO A 249 0 -0.01 CISPEP 2 PRO A 377 VAL A 378 0 0.01 CISPEP 3 TYR A 423 PRO A 424 0 0.04 CISPEP 4 SER A 473 PRO A 474 0 -3.68 CISPEP 5 PHE A 924 ASN A 925 0 0.98 CISPEP 6 ASP A 948 TRP A 949 0 -2.89 CISPEP 7 GLU A 985 GLY A 986 0 -0.04 CISPEP 8 GLY A 1034 ALA A 1035 0 -0.73 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.003827 0.000000 0.000000 0.00000 SCALE2 0.000000 0.003827 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003827 0.00000