HEADER TRANSFERASE 24-JAN-97 3JDW TITLE CRYSTAL STRUCTURE AND MECHANISM OF L-ARGININE: GLYCINE TITLE 2 AMIDINOTRANSFERASE: A MITOCHONDRIAL ENZYME INVOLVED IN CREATINE TITLE 3 BIOSYNTHESIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: L-ARGININE\:GLYCINE AMIDINOTRANSFERASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 64 - 423; COMPND 5 SYNONYM: TRANSAMIDINASE, AT38; COMPND 6 EC: 2.1.4.1; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 CELL_LINE: BL21; SOURCE 6 ORGAN: KIDNEY; SOURCE 7 ORGANELLE: MITOCHONDRIA; SOURCE 8 CELLULAR_LOCATION: INTERMEMBRANE SPACE OF MITOCHONDRIA AND SOURCE 9 CYTOPLASM; SOURCE 10 GENE: AT38H; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 13 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3) PLYSS; SOURCE 14 EXPRESSION_SYSTEM_CELLULAR_LOCATION: CYTOSOLIC; SOURCE 15 EXPRESSION_SYSTEM_VECTOR_TYPE: PBLUESCRIPT DERIVATIVE WITH T7 SOURCE 16 EXPRESSION ELEMENTS; SOURCE 17 EXPRESSION_SYSTEM_VECTOR: PRSET; SOURCE 18 EXPRESSION_SYSTEM_PLASMID: PRSETAT38H; SOURCE 19 EXPRESSION_SYSTEM_GENE: AT38H; SOURCE 20 OTHER_DETAILS: WITHOUT SIGNAL SEQUENCE (1-37) BUT WITH N-TERMINAL SOURCE 21 ATTACHED 6-HISTIDINE-TAG (14 RESIDUES) KEYWDS TRANSFERASE, CREATINE BIOSYNTHESIS, CATALYTIC TRIAD, REACTION KEYWDS 2 MECHANISM, NOVEL FOLD, FIVEFOLD PSEUDOSYMMETRY EXPDTA X-RAY DIFFRACTION AUTHOR A.HUMM,E.FRITSCHE,S.STEINBACHER,R.HUBER REVDAT 5 22-MAY-24 3JDW 1 REMARK REVDAT 4 09-AUG-23 3JDW 1 REMARK REVDAT 3 13-JUL-11 3JDW 1 VERSN REVDAT 2 24-FEB-09 3JDW 1 VERSN REVDAT 1 28-JAN-98 3JDW 0 JRNL AUTH A.HUMM,E.FRITSCHE,S.STEINBACHER,R.HUBER JRNL TITL CRYSTAL STRUCTURE AND MECHANISM OF HUMAN L-ARGININE:GLYCINE JRNL TITL 2 AMIDINOTRANSFERASE: A MITOCHONDRIAL ENZYME INVOLVED IN JRNL TITL 3 CREATINE BIOSYNTHESIS. JRNL REF EMBO J. V. 16 3373 1997 JRNL REFN ISSN 0261-4189 JRNL PMID 9218780 JRNL DOI 10.1093/EMBOJ/16.12.3373 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH A.HUMM,E.FRITSCHE,S.STEINBACHER REMARK 1 TITL STRUCTURE AND REACTION MECHANISM OF L-ARGININE:GLYCINE REMARK 1 TITL 2 AMIDINOTRANSFERASE REMARK 1 REF BIOL.CHEM.HOPPE-SEYLER V. 378 193 1997 REMARK 1 REFN ISSN 0177-3593 REMARK 1 REFERENCE 2 REMARK 1 AUTH E.FRITSCHE,A.HUMM,R.HUBER REMARK 1 TITL SUBSTRATE BINDING AND CATALYSIS BY L-ARGININE:GLYCINE REMARK 1 TITL 2 AMIDINOTRANSFERASE--A MUTAGENESIS AND CRYSTALLOGRAPHIC STUDY REMARK 1 REF EUR.J.BIOCHEM. V. 247 483 1997 REMARK 1 REFN ISSN 0014-2956 REMARK 1 REFERENCE 3 REMARK 1 AUTH A.HUMM,E.FRITSCHE,K.MANN,M.GOHL,R.HUBER REMARK 1 TITL RECOMBINANT EXPRESSION AND ISOLATION OF HUMAN REMARK 1 TITL 2 L-ARGININE:GLYCINE AMIDINOTRANSFERASE AND IDENTIFICATION OF REMARK 1 TITL 3 ITS ACTIVE-SITE CYSTEINE RESIDUE REMARK 1 REF BIOCHEM.J. V. 322 771 1997 REMARK 1 REFN ISSN 0264-6021 REMARK 1 REFERENCE 4 REMARK 1 AUTH N.BUDISA,W.KARNBROCK,S.STEINBACHER,A.HUMM,L.PRADE, REMARK 1 AUTH 2 T.NEUEFEIND,L.MORODER,R.HUBER REMARK 1 TITL BIOINCORPORATION OF TELLUROMETHIONINE INTO PROTEINS: A REMARK 1 TITL 2 PROMISING NEW APPROACH FOR X-RAY STRUCTURE ANALYSIS OF REMARK 1 TITL 3 PROTEINS REMARK 1 REF J.MOL.BIOL. V. 270 616 1997 REMARK 1 REFN ISSN 0022-2836 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.1 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 8.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 93.1 REMARK 3 NUMBER OF REFLECTIONS : 25838 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : 0.181 REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 30 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.43 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 51.90 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 458 REMARK 3 BIN R VALUE (WORKING SET) : 0.3020 REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2938 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 9 REMARK 3 SOLVENT ATOMS : 193 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.61 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.011 REMARK 3 BOND ANGLES (DEGREES) : 1.620 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 25.11 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.420 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: RESIDUES 38 - 63 ARE NOT VISIBLE IN THE REMARK 3 ELECTRON DENSITY REMARK 4 REMARK 4 3JDW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000179021. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-NOV-95 REMARK 200 TEMPERATURE (KELVIN) : 290 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RUH2R REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : GRAPHITE(002) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM V. 5.23 REMARK 200 DATA SCALING SOFTWARE : CCP4 (AGROVATA, ROTAVATA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25838 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 8.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.1 REMARK 200 DATA REDUNDANCY : 3.780 REMARK 200 R MERGE (I) : 0.07400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.43 REMARK 200 COMPLETENESS FOR SHELL (%) : 51.9 REMARK 200 DATA REDUNDANCY IN SHELL : 1.70 REMARK 200 R MERGE FOR SHELL (I) : 0.28700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: ISOMORPHOUS WITH PDB ENTRY REMARK 200 1JDW REMARK 200 SOFTWARE USED: X-PLOR 3.1 REMARK 200 STARTING MODEL: PDB ENTRY 1JDW REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 65.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.80 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1 PART OF AT38H (13-16 MG/ML) 2 PARTS REMARK 280 OF PRECIPITANT (3% PEG 6000, 40 MM HEPES, 1MM GLUTATHIONE, PH7.0) REMARK 280 , SEVERAL DAYS AT ROOM TEMPERATURE, MACRO SEEDING. REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 99.82500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 41.88000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 41.88000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 149.73750 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 41.88000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 41.88000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 49.91250 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 41.88000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 41.88000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 149.73750 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 41.88000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 41.88000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 49.91250 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 99.82500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 LEU A 2 REMARK 465 ARG A 3 REMARK 465 VAL A 4 REMARK 465 ARG A 5 REMARK 465 CYS A 6 REMARK 465 LEU A 7 REMARK 465 ARG A 8 REMARK 465 GLY A 9 REMARK 465 GLY A 10 REMARK 465 SER A 11 REMARK 465 ARG A 12 REMARK 465 GLY A 13 REMARK 465 ALA A 14 REMARK 465 GLU A 15 REMARK 465 ALA A 16 REMARK 465 VAL A 17 REMARK 465 HIS A 18 REMARK 465 TYR A 19 REMARK 465 ILE A 20 REMARK 465 GLY A 21 REMARK 465 SER A 22 REMARK 465 ARG A 23 REMARK 465 LEU A 24 REMARK 465 GLY A 25 REMARK 465 ARG A 26 REMARK 465 THR A 27 REMARK 465 LEU A 28 REMARK 465 THR A 29 REMARK 465 GLY A 30 REMARK 465 TRP A 31 REMARK 465 VAL A 32 REMARK 465 GLN A 33 REMARK 465 ARG A 34 REMARK 465 THR A 35 REMARK 465 PHE A 36 REMARK 465 GLN A 37 REMARK 465 SER A 38 REMARK 465 THR A 39 REMARK 465 GLN A 40 REMARK 465 ALA A 41 REMARK 465 ALA A 42 REMARK 465 THR A 43 REMARK 465 ALA A 44 REMARK 465 SER A 45 REMARK 465 SER A 46 REMARK 465 ARG A 47 REMARK 465 ASN A 48 REMARK 465 SER A 49 REMARK 465 CYS A 50 REMARK 465 ALA A 51 REMARK 465 ALA A 52 REMARK 465 ASP A 53 REMARK 465 ASP A 54 REMARK 465 LYS A 55 REMARK 465 ALA A 56 REMARK 465 THR A 57 REMARK 465 GLU A 58 REMARK 465 PRO A 59 REMARK 465 LEU A 60 REMARK 465 PRO A 61 REMARK 465 LYS A 62 REMARK 465 ASP A 63 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HG SER A 68 HH12 ARG A 260 1.21 REMARK 500 HH21 ARG A 82 H2 HOH A 675 1.22 REMARK 500 HH21 ARG A 414 H1 HOH A 505 1.22 REMARK 500 O HOH A 538 H1 HOH A 626 1.56 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 HZ1 LYS A 201 H2 HOH A 517 7555 1.26 REMARK 500 O HOH A 655 H2 HOH A 693 6465 1.34 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 67 99.35 -177.78 REMARK 500 LEU A 163 -81.75 -118.13 REMARK 500 TYR A 164 -178.04 -172.68 REMARK 500 MET A 184 171.33 80.93 REMARK 500 HIS A 230 -15.89 -29.47 REMARK 500 SER A 231 138.73 121.95 REMARK 500 VAL A 232 -28.33 -178.34 REMARK 500 GLU A 233 -19.47 60.49 REMARK 500 ASN A 300 69.36 -152.17 REMARK 500 MET A 302 104.30 -161.02 REMARK 500 HIS A 303 146.60 83.73 REMARK 500 THR A 307 -45.58 -134.04 REMARK 500 PRO A 313 106.16 -59.78 REMARK 500 TRP A 357 12.91 -69.37 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ORN A 500 DBREF 3JDW A 1 423 UNP P50440 GATM_HUMAN 1 423 SEQRES 1 A 423 MET LEU ARG VAL ARG CYS LEU ARG GLY GLY SER ARG GLY SEQRES 2 A 423 ALA GLU ALA VAL HIS TYR ILE GLY SER ARG LEU GLY ARG SEQRES 3 A 423 THR LEU THR GLY TRP VAL GLN ARG THR PHE GLN SER THR SEQRES 4 A 423 GLN ALA ALA THR ALA SER SER ARG ASN SER CYS ALA ALA SEQRES 5 A 423 ASP ASP LYS ALA THR GLU PRO LEU PRO LYS ASP CYS PRO SEQRES 6 A 423 VAL SER SER TYR ASN GLU TRP ASP PRO LEU GLU GLU VAL SEQRES 7 A 423 ILE VAL GLY ARG ALA GLU ASN ALA CYS VAL PRO PRO PHE SEQRES 8 A 423 THR ILE GLU VAL LYS ALA ASN THR TYR GLU LYS TYR TRP SEQRES 9 A 423 PRO PHE TYR GLN LYS GLN GLY GLY HIS TYR PHE PRO LYS SEQRES 10 A 423 ASP HIS LEU LYS LYS ALA VAL ALA GLU ILE GLU GLU MET SEQRES 11 A 423 CYS ASN ILE LEU LYS THR GLU GLY VAL THR VAL ARG ARG SEQRES 12 A 423 PRO ASP PRO ILE ASP TRP SER LEU LYS TYR LYS THR PRO SEQRES 13 A 423 ASP PHE GLU SER THR GLY LEU TYR SER ALA MET PRO ARG SEQRES 14 A 423 ASP ILE LEU ILE VAL VAL GLY ASN GLU ILE ILE GLU ALA SEQRES 15 A 423 PRO MET ALA TRP ARG SER ARG PHE PHE GLU TYR ARG ALA SEQRES 16 A 423 TYR ARG SER ILE ILE LYS ASP TYR PHE HIS ARG GLY ALA SEQRES 17 A 423 LYS TRP THR THR ALA PRO LYS PRO THR MET ALA ASP GLU SEQRES 18 A 423 LEU TYR ASN GLN ASP TYR PRO ILE HIS SER VAL GLU ASP SEQRES 19 A 423 ARG HIS LYS LEU ALA ALA GLN GLY LYS PHE VAL THR THR SEQRES 20 A 423 GLU PHE GLU PRO CYS PHE ASP ALA ALA ASP PHE ILE ARG SEQRES 21 A 423 ALA GLY ARG ASP ILE PHE ALA GLN ARG SER GLN VAL THR SEQRES 22 A 423 ASN TYR LEU GLY ILE GLU TRP MET ARG ARG HIS LEU ALA SEQRES 23 A 423 PRO ASP TYR ARG VAL HIS ILE ILE SER PHE LYS ASP PRO SEQRES 24 A 423 ASN PRO MET HIS ILE ASP ALA THR PHE ASN ILE ILE GLY SEQRES 25 A 423 PRO GLY ILE VAL LEU SER ASN PRO ASP ARG PRO CYS HIS SEQRES 26 A 423 GLN ILE ASP LEU PHE LYS LYS ALA GLY TRP THR ILE ILE SEQRES 27 A 423 THR PRO PRO THR PRO ILE ILE PRO ASP ASP HIS PRO LEU SEQRES 28 A 423 TRP MET SER SER LYS TRP LEU SER MET ASN VAL LEU MET SEQRES 29 A 423 LEU ASP GLU LYS ARG VAL MET VAL ASP ALA ASN GLU VAL SEQRES 30 A 423 PRO ILE GLN LYS MET PHE GLU LYS LEU GLY ILE THR THR SEQRES 31 A 423 ILE LYS VAL ASN ILE ARG ASN ALA ASN SER LEU GLY GLY SEQRES 32 A 423 GLY PHE HIS CYS TRP THR CYS ASP VAL ARG ARG ARG GLY SEQRES 33 A 423 THR LEU GLN SER TYR LEU ASP HET ORN A 500 15 HETNAM ORN L-ORNITHINE FORMUL 2 ORN C5 H12 N2 O2 FORMUL 3 HOH *193(H2 O) HELIX 1 1 ILE A 93 LYS A 96 1 4 HELIX 2 2 GLU A 101 GLN A 110 5 10 HELIX 3 3 LYS A 117 THR A 136 1 20 HELIX 4 4 PRO A 168 ILE A 171 1 4 HELIX 5 5 ARG A 187 ARG A 189 5 3 HELIX 6 6 GLU A 192 ALA A 195 5 4 HELIX 7 7 ARG A 197 HIS A 205 1 9 HELIX 8 8 ASP A 220 LEU A 222 5 3 HELIX 9 9 ARG A 235 GLN A 241 1 7 HELIX 10 10 ALA A 255 ASP A 257 5 3 HELIX 11 11 TYR A 275 LEU A 285 1 11 HELIX 12 12 ILE A 327 LYS A 332 1 6 HELIX 13 13 LYS A 356 MET A 360 5 5 HELIX 14 14 VAL A 377 LYS A 385 1 9 HELIX 15 15 ALA A 398 LEU A 401 5 4 SHEET 1 A 3 THR A 140 ARG A 143 0 SHEET 2 A 3 GLU A 77 VAL A 80 1 N VAL A 78 O THR A 140 SHEET 3 A 3 THR A 409 ASP A 411 -1 N CYS A 410 O ILE A 79 SHEET 1 B 2 TYR A 153 THR A 155 0 SHEET 2 B 2 PHE A 158 SER A 160 -1 N SER A 160 O TYR A 153 SHEET 1 C 3 LEU A 172 VAL A 175 0 SHEET 2 C 3 GLU A 178 GLU A 181 -1 N ILE A 180 O ILE A 173 SHEET 3 C 3 LYS A 209 THR A 212 1 N LYS A 209 O ILE A 179 SHEET 1 D 3 PHE A 258 ALA A 261 0 SHEET 2 D 3 ASP A 264 ALA A 267 -1 N PHE A 266 O ILE A 259 SHEET 3 D 3 ARG A 290 ILE A 293 1 N ARG A 290 O ILE A 265 SHEET 1 E 3 THR A 336 ILE A 338 0 SHEET 2 E 3 ILE A 315 SER A 318 1 N VAL A 316 O THR A 336 SHEET 3 E 3 PHE A 308 GLY A 312 -1 N GLY A 312 O ILE A 315 SHEET 1 F 3 THR A 389 VAL A 393 0 SHEET 2 F 3 ARG A 369 ASP A 373 1 N VAL A 370 O THR A 389 SHEET 3 F 3 LEU A 363 ASP A 366 -1 N ASP A 366 O ARG A 369 SHEET 1 G 2 PRO A 74 GLU A 77 0 SHEET 2 G 2 ARG A 413 ARG A 415 -1 N ARG A 415 O PRO A 74 CISPEP 1 ALA A 286 PRO A 287 0 -0.96 SITE 1 AC1 10 MET A 302 HIS A 303 ASP A 305 ALA A 306 SITE 2 AC1 10 ARG A 322 SER A 354 SER A 355 GLY A 402 SITE 3 AC1 10 CYS A 407 HOH A 578 CRYST1 83.760 83.760 199.650 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011939 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011939 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005009 0.00000