HEADER GENE REGULATION 04-SEP-09 3JPX TITLE EED: A NOVEL HISTONE TRIMETHYLLYSINE BINDER WITHIN THE EED-EZH2 TITLE 2 POLYCOMB COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: POLYCOMB PROTEIN EED; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUE: 40-441; COMPND 5 SYNONYM: HEED, WD PROTEIN ASSOCIATING WITH INTEGRIN CYTOPLASMIC TAILS COMPND 6 1, WAIT-1; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: HISTONE PEPTIDE; COMPND 10 CHAIN: B; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: EED; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES KEYWDS HISTONE BINDING, STRUCTURAL GENOMICS, SGC, STRUCTURAL GENOMICS KEYWDS 2 CONSORTIUM, ALTERNATIVE INITIATION, CHROMATIN REGULATOR, NUCLEUS, KEYWDS 3 PHOSPHOPROTEIN, REPRESSOR, TRANSCRIPTION, TRANSCRIPTION REGULATION, KEYWDS 4 WD REPEAT, GENE REGULATION EXPDTA X-RAY DIFFRACTION AUTHOR C.XU,C.B.BIAN,C.BOUNTRA,J.WEIGELT,C.H.ARROWSMITH,A.M.EDWARDS, AUTHOR 2 A.BOCHKAREV,J.MIN,STRUCTURAL GENOMICS CONSORTIUM (SGC) REVDAT 4 06-SEP-23 3JPX 1 LINK REVDAT 3 24-NOV-10 3JPX 1 JRNL REVDAT 2 03-NOV-10 3JPX 1 JRNL REVDAT 1 20-OCT-09 3JPX 0 JRNL AUTH C.XU,C.BIAN,W.YANG,M.GALKA,H.OUYANG,C.CHEN,W.QIU,H.LIU, JRNL AUTH 2 A.E.JONES,F.MACKENZIE,P.PAN,S.S.LI,H.WANG,J.MIN JRNL TITL BINDING OF DIFFERENT HISTONE MARKS DIFFERENTIALLY REGULATES JRNL TITL 2 THE ACTIVITY AND SPECIFICITY OF POLYCOMB REPRESSIVE COMPLEX JRNL TITL 3 2 (PRC2). JRNL REF PROC.NATL.ACAD.SCI.USA V. 107 19266 2010 JRNL REFN ISSN 0027-8424 JRNL PMID 20974918 JRNL DOI 10.1073/PNAS.1008937107 REMARK 2 REMARK 2 RESOLUTION. 2.05 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0072 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.05 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.89 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 3 NUMBER OF REFLECTIONS : 27117 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.167 REMARK 3 R VALUE (WORKING SET) : 0.164 REMARK 3 FREE R VALUE : 0.211 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1455 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.05 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.10 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1672 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 83.76 REMARK 3 BIN R VALUE (WORKING SET) : 0.2460 REMARK 3 BIN FREE R VALUE SET COUNT : 87 REMARK 3 BIN FREE R VALUE : 0.2870 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2963 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 289 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 29.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.21 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.17000 REMARK 3 B22 (A**2) : -0.92000 REMARK 3 B33 (A**2) : 0.75000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.166 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.153 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.101 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.764 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.959 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.937 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3037 ; 0.023 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4112 ; 1.893 ; 1.930 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 363 ; 7.005 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 150 ;36.136 ;23.667 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 524 ;14.418 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 21 ;20.750 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 440 ; 0.141 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2309 ; 0.010 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1816 ; 1.123 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2937 ; 1.932 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1221 ; 3.291 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1175 ; 5.057 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3JPX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-SEP-09. REMARK 100 THE DEPOSITION ID IS D_1000055010. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-APR-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU FR-E SUPERBRIGHT REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : SI REMARK 200 OPTICS : VMAX REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28626 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.050 REMARK 200 RESOLUTION RANGE LOW (A) : 48.890 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 200 DATA REDUNDANCY : 6.500 REMARK 200 R MERGE (I) : 0.15400 REMARK 200 R SYM (I) : 0.15400 REMARK 200 FOR THE DATA SET : 5.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 2QXV REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.72 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.35 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 3.5M NAF, 10 MM TCEP CHLORIDE, PH 7.5, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 300K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 28.93850 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 45.66450 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 42.64900 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 45.66450 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 28.93850 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 42.64900 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 880 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15700 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -5.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 40 REMARK 465 ALA A 41 REMARK 465 VAL A 42 REMARK 465 SER A 43 REMARK 465 ILE A 44 REMARK 465 GLU A 45 REMARK 465 SER A 46 REMARK 465 GLY A 47 REMARK 465 THR A 48 REMARK 465 ASN A 49 REMARK 465 THR A 50 REMARK 465 GLU A 51 REMARK 465 ARG A 52 REMARK 465 PRO A 53 REMARK 465 ASP A 54 REMARK 465 THR A 55 REMARK 465 PRO A 56 REMARK 465 THR A 57 REMARK 465 ASN A 58 REMARK 465 THR A 59 REMARK 465 PRO A 60 REMARK 465 ASN A 61 REMARK 465 ALA A 62 REMARK 465 PRO A 63 REMARK 465 GLY A 64 REMARK 465 ARG A 65 REMARK 465 LYS A 66 REMARK 465 SER A 67 REMARK 465 TRP A 68 REMARK 465 GLY A 69 REMARK 465 LYS A 70 REMARK 465 GLY A 71 REMARK 465 LYS A 72 REMARK 465 TRP A 73 REMARK 465 LYS A 74 REMARK 465 SER A 75 REMARK 465 LYS A 76 REMARK 465 LYS A 77 REMARK 465 CYS A 78 REMARK 465 LYS A 79 REMARK 465 TYR A 80 REMARK 465 LEU A 440 REMARK 465 ARG A 441 REMARK 465 GLY B 13 REMARK 465 GLY B 14 REMARK 465 ALA B 15 REMARK 465 LYS B 16 REMARK 465 ARG B 17 REMARK 465 ASP B 24 REMARK 465 ASN B 25 REMARK 465 ILE B 26 REMARK 465 GLN B 27 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 652 O HOH A 677 1.99 REMARK 500 O HIS A 189 ND2 ASN A 191 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 548 O HOH A 604 3545 1.98 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 VAL A 121 CB - CA - C ANGL. DEV. = -14.4 DEGREES REMARK 500 ARG A 216 NE - CZ - NH2 ANGL. DEV. = -6.2 DEGREES REMARK 500 ASP A 237 CB - CG - OD1 ANGL. DEV. = 6.3 DEGREES REMARK 500 ARG A 367 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 93 17.33 53.36 REMARK 500 SER A 118 -144.94 50.76 REMARK 500 LEU A 135 -85.22 -106.45 REMARK 500 SER A 159 -1.73 67.57 REMARK 500 HIS A 213 -1.05 82.47 REMARK 500 PHE A 299 149.56 -170.54 REMARK 500 SER A 323 -162.10 -121.96 REMARK 500 CYS A 324 44.96 -97.02 REMARK 500 TYR A 365 62.74 76.23 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3JZH RELATED DB: PDB REMARK 900 RELATED ID: 3JZG RELATED DB: PDB DBREF 3JPX A 40 441 UNP O75530 EED_HUMAN 40 441 DBREF 3JPX B 13 27 PDB 3JPX 3JPX 13 27 SEQRES 1 A 402 ASP ALA VAL SER ILE GLU SER GLY THR ASN THR GLU ARG SEQRES 2 A 402 PRO ASP THR PRO THR ASN THR PRO ASN ALA PRO GLY ARG SEQRES 3 A 402 LYS SER TRP GLY LYS GLY LYS TRP LYS SER LYS LYS CYS SEQRES 4 A 402 LYS TYR SER PHE LYS CYS VAL ASN SER LEU LYS GLU ASP SEQRES 5 A 402 HIS ASN GLN PRO LEU PHE GLY VAL GLN PHE ASN TRP HIS SEQRES 6 A 402 SER LYS GLU GLY ASP PRO LEU VAL PHE ALA THR VAL GLY SEQRES 7 A 402 SER ASN ARG VAL THR LEU TYR GLU CYS HIS SER GLN GLY SEQRES 8 A 402 GLU ILE ARG LEU LEU GLN SER TYR VAL ASP ALA ASP ALA SEQRES 9 A 402 ASP GLU ASN PHE TYR THR CYS ALA TRP THR TYR ASP SER SEQRES 10 A 402 ASN THR SER HIS PRO LEU LEU ALA VAL ALA GLY SER ARG SEQRES 11 A 402 GLY ILE ILE ARG ILE ILE ASN PRO ILE THR MET GLN CYS SEQRES 12 A 402 ILE LYS HIS TYR VAL GLY HIS GLY ASN ALA ILE ASN GLU SEQRES 13 A 402 LEU LYS PHE HIS PRO ARG ASP PRO ASN LEU LEU LEU SER SEQRES 14 A 402 VAL SER LYS ASP HIS ALA LEU ARG LEU TRP ASN ILE GLN SEQRES 15 A 402 THR ASP THR LEU VAL ALA ILE PHE GLY GLY VAL GLU GLY SEQRES 16 A 402 HIS ARG ASP GLU VAL LEU SER ALA ASP TYR ASP LEU LEU SEQRES 17 A 402 GLY GLU LYS ILE MET SER CYS GLY MET ASP HIS SER LEU SEQRES 18 A 402 LYS LEU TRP ARG ILE ASN SER LYS ARG MET MET ASN ALA SEQRES 19 A 402 ILE LYS GLU SER TYR ASP TYR ASN PRO ASN LYS THR ASN SEQRES 20 A 402 ARG PRO PHE ILE SER GLN LYS ILE HIS PHE PRO ASP PHE SEQRES 21 A 402 SER THR ARG ASP ILE HIS ARG ASN TYR VAL ASP CYS VAL SEQRES 22 A 402 ARG TRP LEU GLY ASP LEU ILE LEU SER LYS SER CYS GLU SEQRES 23 A 402 ASN ALA ILE VAL CYS TRP LYS PRO GLY LYS MET GLU ASP SEQRES 24 A 402 ASP ILE ASP LYS ILE LYS PRO SER GLU SER ASN VAL THR SEQRES 25 A 402 ILE LEU GLY ARG PHE ASP TYR SER GLN CYS ASP ILE TRP SEQRES 26 A 402 TYR MET ARG PHE SER MET ASP PHE TRP GLN LYS MET LEU SEQRES 27 A 402 ALA LEU GLY ASN GLN VAL GLY LYS LEU TYR VAL TRP ASP SEQRES 28 A 402 LEU GLU VAL GLU ASP PRO HIS LYS ALA LYS CYS THR THR SEQRES 29 A 402 LEU THR HIS HIS LYS CYS GLY ALA ALA ILE ARG GLN THR SEQRES 30 A 402 SER PHE SER ARG ASP SER SER ILE LEU ILE ALA VAL CYS SEQRES 31 A 402 ASP ASP ALA SER ILE TRP ARG TRP ASP ARG LEU ARG SEQRES 1 B 15 GLY GLY ALA LYS ARG HIS ARG M3L VAL LEU ARG ASP ASN SEQRES 2 B 15 ILE GLN MODRES 3JPX M3L B 20 LYS N-TRIMETHYLLYSINE HET M3L B 20 12 HETNAM M3L N-TRIMETHYLLYSINE FORMUL 2 M3L C9 H21 N2 O2 1+ FORMUL 3 HOH *289(H2 O) HELIX 1 1 SER A 267 ASP A 279 1 13 HELIX 2 2 ASN A 281 THR A 285 5 5 HELIX 3 3 ASP A 339 ILE A 343 5 5 HELIX 4 4 ASP A 395 ALA A 399 5 5 SHEET 1 A 4 LYS A 83 LYS A 89 0 SHEET 2 A 4 SER A 433 ASP A 438 -1 O ILE A 434 N LEU A 88 SHEET 3 A 4 ILE A 424 CYS A 429 -1 N LEU A 425 O TRP A 437 SHEET 4 A 4 ILE A 413 PHE A 418 -1 N SER A 417 O ILE A 426 SHEET 1 B 4 LEU A 96 PHE A 101 0 SHEET 2 B 4 LEU A 111 GLY A 117 -1 O ALA A 114 N GLN A 100 SHEET 3 B 4 ARG A 120 CYS A 126 -1 O CYS A 126 N LEU A 111 SHEET 4 B 4 ILE A 132 VAL A 139 -1 O ARG A 133 N GLU A 125 SHEET 1 C 4 PHE A 147 TYR A 154 0 SHEET 2 C 4 PRO A 161 GLY A 167 -1 O ALA A 164 N ALA A 151 SHEET 3 C 4 ILE A 171 ILE A 175 -1 O ILE A 175 N LEU A 163 SHEET 4 C 4 CYS A 182 VAL A 187 -1 O LYS A 184 N ILE A 174 SHEET 1 D 5 ILE A 193 PHE A 198 0 SHEET 2 D 5 LEU A 205 SER A 210 -1 O LEU A 207 N LYS A 197 SHEET 3 D 5 LEU A 215 ASN A 219 -1 O TRP A 218 N LEU A 206 SHEET 4 D 5 THR A 224 PHE A 229 -1 O PHE A 229 N LEU A 215 SHEET 5 D 5 GLN A 292 ILE A 294 1 O ILE A 294 N ILE A 228 SHEET 1 E 4 VAL A 239 TYR A 244 0 SHEET 2 E 4 LYS A 250 GLY A 255 -1 O MET A 252 N ASP A 243 SHEET 3 E 4 LEU A 260 ARG A 264 -1 O TRP A 263 N ILE A 251 SHEET 4 E 4 PHE A 299 THR A 301 -1 O PHE A 299 N LEU A 262 SHEET 1 F 4 VAL A 309 LEU A 315 0 SHEET 2 F 4 LEU A 318 SER A 323 -1 O LEU A 320 N ARG A 313 SHEET 3 F 4 ALA A 327 PRO A 333 -1 O TRP A 331 N ILE A 319 SHEET 4 F 4 VAL A 350 ASP A 357 -1 O PHE A 356 N ILE A 328 SHEET 1 G 4 SER A 369 MET A 370 0 SHEET 2 G 4 MET A 376 GLY A 380 -1 O ALA A 378 N SER A 369 SHEET 3 G 4 LEU A 386 ASP A 390 -1 O TRP A 389 N LEU A 377 SHEET 4 G 4 LYS A 400 LEU A 404 -1 O LYS A 400 N ASP A 390 LINK C ARG B 19 N M3L B 20 1555 1555 1.33 LINK C M3L B 20 N VAL B 21 1555 1555 1.34 CRYST1 57.877 85.298 91.329 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017278 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011724 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010949 0.00000