HEADER CELL ADHESION 08-SEP-09 3JQW TITLE CRYSTAL STRUCTURE OF CLOSTRIDIUM HISTOLYTICUM COLH COLLAGENASE TITLE 2 COLLAGEN-BINDING DOMAIN 3 AT 2 ANGSTROM RESOLUTION IN PRESENCE OF TITLE 3 CALCIUM COMPND MOL_ID: 1; COMPND 2 MOLECULE: COLH PROTEIN; COMPND 3 CHAIN: A, B, C; COMPND 4 FRAGMENT: COLLAGEN BINDING DOMAIN; COMPND 5 SYNONYM: COLLAGENASE; COMPND 6 EC: 3.4.24.3; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CLOSTRIDIUM HISTOLYTICUM; SOURCE 3 ORGANISM_TAXID: 1498; SOURCE 4 GENE: COLH; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS BETA-BARREL, DUAL CALCIUM SITE, COLLAGEN, CELL ADHESION EXPDTA X-RAY DIFFRACTION AUTHOR J.SAKON,S.T.L.PHILOMINATHAN,O.MATSUSHITA,R.BAUER REVDAT 6 06-SEP-23 3JQW 1 REMARK SEQADV LINK REVDAT 5 09-JAN-13 3JQW 1 JRNL REVDAT 4 05-DEC-12 3JQW 1 JRNL REVDAT 3 11-JAN-12 3JQW 1 HET LINK REMARK VERSN REVDAT 2 02-MAR-11 3JQW 1 JRNL TITLE REVDAT 1 29-SEP-10 3JQW 0 JRNL AUTH R.BAUER,J.J.WILSON,S.T.PHILOMINATHAN,D.DAVIS,O.MATSUSHITA, JRNL AUTH 2 J.SAKON JRNL TITL STRUCTURAL COMPARISON OF COLH AND COLG COLLAGEN-BINDING JRNL TITL 2 DOMAINS FROM CLOSTRIDIUM HISTOLYTICUM. JRNL REF J.BACTERIOL. V. 195 318 2013 JRNL REFN ISSN 0021-9193 JRNL PMID 23144249 JRNL DOI 10.1128/JB.00010-12 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.50 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 24835 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.177 REMARK 3 R VALUE (WORKING SET) : 0.174 REMARK 3 FREE R VALUE : 0.233 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1330 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1792 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.52 REMARK 3 BIN R VALUE (WORKING SET) : 0.1950 REMARK 3 BIN FREE R VALUE SET COUNT : 91 REMARK 3 BIN FREE R VALUE : 0.2840 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2801 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 6 REMARK 3 SOLVENT ATOMS : 326 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.60 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.01000 REMARK 3 B22 (A**2) : 0.01000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.181 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.169 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.112 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.951 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.957 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.920 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2885 ; 0.017 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3925 ; 1.567 ; 1.952 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 355 ; 6.114 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 143 ;38.420 ;25.315 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 440 ;15.188 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 8 ;23.813 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 404 ; 0.111 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2288 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1282 ; 0.212 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1948 ; 0.317 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 257 ; 0.159 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 22 ; 0.108 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 40 ; 0.190 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 26 ; 0.109 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1817 ; 1.151 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2871 ; 1.946 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1251 ; 2.841 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1054 ; 4.248 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3JQW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-SEP-09. REMARK 100 THE DEPOSITION ID IS D_1000055045. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL; NULL REMARK 200 TEMPERATURE (KELVIN) : NULL; NULL REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; N REMARK 200 RADIATION SOURCE : APS; ROTATING ANODE REMARK 200 BEAMLINE : 19-ID; NULL REMARK 200 X-RAY GENERATOR MODEL : NULL; RIGAKU MICROMAX-007 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; NULL REMARK 200 WAVELENGTH OR RANGE (A) : 0.97937; 1.5418 REMARK 200 MONOCHROMATOR : NULL; NULL REMARK 200 OPTICS : NULL; RIGAKU CONFOCAL REMARK 200 REMARK 200 DETECTOR TYPE : CCD; CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315; RIGAKU SATURN REMARK 200 92 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24837 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 28.500 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 18.80 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.08600 REMARK 200 FOR THE DATA SET : 16.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.05 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.4 REMARK 200 DATA REDUNDANCY IN SHELL : 4.10 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.49200 REMARK 200 FOR SHELL : 3.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER, CCP4 REMARK 200 STARTING MODEL: 2O8O REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.84 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.36 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG3350, LI2SO4, CACL2, PH 7.5, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 31.00050 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 47.68750 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 32.09000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 47.68750 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 31.00050 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 32.09000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN A 861 REMARK 465 VAL A 862 REMARK 465 GLY A 980 REMARK 465 ARG A 981 REMARK 465 GLN B 861 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 1172 O HOH A 1186 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 972 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 ARG B 972 NE - CZ - NH2 ANGL. DEV. = -4.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 894 -179.47 -175.24 REMARK 500 PRO A 908 150.25 -47.18 REMARK 500 ASN B 894 177.84 178.04 REMARK 500 ASN C 894 -177.28 -172.51 REMARK 500 TYR C 968 49.35 31.67 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1002 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 868 OE2 REMARK 620 2 GLU A 868 OE1 51.0 REMARK 620 3 GLU A 870 OE2 106.3 77.8 REMARK 620 4 THR A 891 O 75.4 117.8 156.1 REMARK 620 5 ASP A 897 OD2 155.0 154.0 88.5 82.9 REMARK 620 6 ASP A 899 OD2 91.1 70.9 120.9 82.5 98.5 REMARK 620 7 ASP A 899 OD1 126.6 79.2 75.8 123.1 76.1 50.3 REMARK 620 8 HOH A1103 O 77.7 114.4 81.8 75.2 84.8 157.0 150.7 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1001 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 870 OE2 REMARK 620 2 GLU A 870 OE1 50.9 REMARK 620 3 ASN A 872 OD1 85.8 74.2 REMARK 620 4 ASN A 873 OD1 127.5 80.4 100.5 REMARK 620 5 ASP A 897 OD1 80.7 99.1 166.1 90.2 REMARK 620 6 GLN A 898 O 154.4 153.2 94.9 77.7 96.1 REMARK 620 7 ASP A 899 OD1 75.6 124.7 90.7 154.6 83.1 78.8 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B1002 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 868 OE2 REMARK 620 2 GLU B 868 OE1 52.0 REMARK 620 3 GLU B 870 OE2 106.3 76.5 REMARK 620 4 THR B 891 O 78.1 121.6 155.3 REMARK 620 5 ASP B 897 OD2 154.1 153.7 90.1 78.8 REMARK 620 6 ASP B 899 OD2 91.0 73.0 123.0 80.6 96.7 REMARK 620 7 ASP B 899 OD1 125.0 76.8 75.5 122.5 77.9 51.4 REMARK 620 8 HOH B1107 O 80.3 113.0 75.8 81.2 84.7 161.0 146.3 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B1001 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 870 OE2 REMARK 620 2 GLU B 870 OE1 51.2 REMARK 620 3 ASN B 872 OD1 87.1 71.6 REMARK 620 4 ASN B 873 OD1 127.3 81.4 99.6 REMARK 620 5 ASP B 897 OD1 79.4 106.1 163.6 96.0 REMARK 620 6 GLN B 898 O 153.3 150.6 89.9 79.4 97.8 REMARK 620 7 ASP B 899 OD1 74.5 121.2 86.7 157.3 80.8 78.8 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA C1002 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU C 868 OE2 REMARK 620 2 GLU C 868 OE1 49.9 REMARK 620 3 GLU C 870 OE2 98.9 75.7 REMARK 620 4 THR C 891 O 79.3 117.9 156.1 REMARK 620 5 ASP C 897 OD2 154.8 155.2 91.7 81.8 REMARK 620 6 ASP C 899 OD2 96.6 73.7 122.9 80.8 96.7 REMARK 620 7 ASP C 899 OD1 125.2 76.4 74.2 126.4 79.7 52.5 REMARK 620 8 HOH C1107 O 76.8 113.9 77.8 78.6 83.2 159.2 146.5 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA C1001 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU C 870 OE2 REMARK 620 2 GLU C 870 OE1 52.5 REMARK 620 3 ASN C 872 OD1 85.5 75.4 REMARK 620 4 ASN C 873 OD1 130.6 80.9 98.8 REMARK 620 5 ASP C 897 OD1 81.8 103.3 164.6 96.1 REMARK 620 6 GLN C 898 O 154.6 150.1 91.3 74.7 96.4 REMARK 620 7 ASP C 899 OD1 74.3 125.1 89.1 154.1 79.1 80.5 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA C 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA C 1002 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1NQJ RELATED DB: PDB REMARK 900 COLG COLLAGENASE COLLAGEN BINDING DOMAIN 3B IS SIMILAR REMARK 900 RELATED ID: 2O8O RELATED DB: PDB REMARK 900 COLG COLLAGENASE COLLAGEN BINDING DOMAIN 3B IS SIMILAR REMARK 900 RELATED ID: 3JQU RELATED DB: PDB REMARK 900 COLG COLLAGENASE PKD DOMAIN AT 1.4A RESOLUTION REMARK 900 RELATED ID: 3JQX RELATED DB: PDB REMARK 900 COLLAGEN BINDING DOMAIN 3 AT 2.2A IN PRESENCE OF CALCIUM AND REMARK 900 CADEMIUM DBREF 3JQW A 862 981 UNP Q46085 Q46085_CLOHI 902 1021 DBREF 3JQW B 862 981 UNP Q46085 Q46085_CLOHI 902 1021 DBREF 3JQW C 862 981 UNP Q46085 Q46085_CLOHI 902 1021 SEQADV 3JQW GLN A 861 UNP Q46085 EXPRESSION TAG SEQADV 3JQW GLN B 861 UNP Q46085 EXPRESSION TAG SEQADV 3JQW GLN C 861 UNP Q46085 EXPRESSION TAG SEQRES 1 A 121 GLN VAL TYR PRO ILE GLY THR GLU LYS GLU PRO ASN ASN SEQRES 2 A 121 SER LYS GLU THR ALA SER GLY PRO ILE VAL PRO GLY ILE SEQRES 3 A 121 PRO VAL SER GLY THR ILE GLU ASN THR SER ASP GLN ASP SEQRES 4 A 121 TYR PHE TYR PHE ASP VAL ILE THR PRO GLY GLU VAL LYS SEQRES 5 A 121 ILE ASP ILE ASN LYS LEU GLY TYR GLY GLY ALA THR TRP SEQRES 6 A 121 VAL VAL TYR ASP GLU ASN ASN ASN ALA VAL SER TYR ALA SEQRES 7 A 121 THR ASP ASP GLY GLN ASN LEU SER GLY LYS PHE LYS ALA SEQRES 8 A 121 ASP LYS PRO GLY ARG TYR TYR ILE HIS LEU TYR MET PHE SEQRES 9 A 121 ASN GLY SER TYR MET PRO TYR ARG ILE ASN ILE GLU GLY SEQRES 10 A 121 SER VAL GLY ARG SEQRES 1 B 121 GLN VAL TYR PRO ILE GLY THR GLU LYS GLU PRO ASN ASN SEQRES 2 B 121 SER LYS GLU THR ALA SER GLY PRO ILE VAL PRO GLY ILE SEQRES 3 B 121 PRO VAL SER GLY THR ILE GLU ASN THR SER ASP GLN ASP SEQRES 4 B 121 TYR PHE TYR PHE ASP VAL ILE THR PRO GLY GLU VAL LYS SEQRES 5 B 121 ILE ASP ILE ASN LYS LEU GLY TYR GLY GLY ALA THR TRP SEQRES 6 B 121 VAL VAL TYR ASP GLU ASN ASN ASN ALA VAL SER TYR ALA SEQRES 7 B 121 THR ASP ASP GLY GLN ASN LEU SER GLY LYS PHE LYS ALA SEQRES 8 B 121 ASP LYS PRO GLY ARG TYR TYR ILE HIS LEU TYR MET PHE SEQRES 9 B 121 ASN GLY SER TYR MET PRO TYR ARG ILE ASN ILE GLU GLY SEQRES 10 B 121 SER VAL GLY ARG SEQRES 1 C 121 GLN VAL TYR PRO ILE GLY THR GLU LYS GLU PRO ASN ASN SEQRES 2 C 121 SER LYS GLU THR ALA SER GLY PRO ILE VAL PRO GLY ILE SEQRES 3 C 121 PRO VAL SER GLY THR ILE GLU ASN THR SER ASP GLN ASP SEQRES 4 C 121 TYR PHE TYR PHE ASP VAL ILE THR PRO GLY GLU VAL LYS SEQRES 5 C 121 ILE ASP ILE ASN LYS LEU GLY TYR GLY GLY ALA THR TRP SEQRES 6 C 121 VAL VAL TYR ASP GLU ASN ASN ASN ALA VAL SER TYR ALA SEQRES 7 C 121 THR ASP ASP GLY GLN ASN LEU SER GLY LYS PHE LYS ALA SEQRES 8 C 121 ASP LYS PRO GLY ARG TYR TYR ILE HIS LEU TYR MET PHE SEQRES 9 C 121 ASN GLY SER TYR MET PRO TYR ARG ILE ASN ILE GLU GLY SEQRES 10 C 121 SER VAL GLY ARG HET CA A1001 1 HET CA A1002 1 HET CA B1001 1 HET CA B1002 1 HET CA C1001 1 HET CA C1002 1 HETNAM CA CALCIUM ION FORMUL 4 CA 6(CA 2+) FORMUL 10 HOH *326(H2 O) HELIX 1 1 SER A 874 ALA A 878 5 5 HELIX 2 2 SER B 874 ALA B 878 5 5 HELIX 3 3 SER C 874 ALA C 878 5 5 SHEET 1 A 5 VAL A 888 ILE A 892 0 SHEET 2 A 5 MET A 969 GLY A 977 -1 O ILE A 973 N VAL A 888 SHEET 3 A 5 GLY A 909 LYS A 917 -1 N ASN A 916 O ARG A 972 SHEET 4 A 5 ASN A 944 ALA A 951 -1 O GLY A 947 N ILE A 913 SHEET 5 A 5 THR A 939 ASP A 940 -1 N THR A 939 O SER A 946 SHEET 1 B 4 ASP A 899 VAL A 905 0 SHEET 2 B 4 GLY A 955 ASN A 965 -1 O GLY A 955 N VAL A 905 SHEET 3 B 4 GLY A 922 TYR A 928 -1 N GLY A 922 O ASN A 965 SHEET 4 B 4 ALA A 934 TYR A 937 -1 O VAL A 935 N VAL A 927 SHEET 1 C 4 VAL B 888 ILE B 892 0 SHEET 2 C 4 GLY B 955 GLY B 977 -1 O ILE B 973 N VAL B 888 SHEET 3 C 4 TYR B 920 TYR B 928 -1 N TYR B 928 O TYR B 958 SHEET 4 C 4 ALA B 934 TYR B 937 -1 O VAL B 935 N VAL B 927 SHEET 1 D 5 ASP B 899 VAL B 905 0 SHEET 2 D 5 GLY B 955 GLY B 977 -1 O GLY B 955 N VAL B 905 SHEET 3 D 5 GLY B 909 LYS B 917 -1 N ASP B 914 O ASN B 974 SHEET 4 D 5 ASN B 944 ALA B 951 -1 O PHE B 949 N VAL B 911 SHEET 5 D 5 THR B 939 ASP B 940 -1 N THR B 939 O SER B 946 SHEET 1 E 5 VAL C 888 ASN C 894 0 SHEET 2 E 5 SER C 967 GLU C 976 -1 O ILE C 973 N VAL C 888 SHEET 3 E 5 GLY C 909 LYS C 917 -1 N ASN C 916 O ARG C 972 SHEET 4 E 5 ASN C 944 ALA C 951 -1 O PHE C 949 N VAL C 911 SHEET 5 E 5 THR C 939 ASP C 940 -1 N THR C 939 O SER C 946 SHEET 1 F 4 ASP C 899 VAL C 905 0 SHEET 2 F 4 GLY C 955 ASN C 965 -1 O GLY C 955 N VAL C 905 SHEET 3 F 4 GLY C 922 ASP C 929 -1 N TYR C 928 O TYR C 958 SHEET 4 F 4 ALA C 934 TYR C 937 -1 O SER C 936 N VAL C 927 LINK OE2 GLU A 868 CA CA A1002 1555 1555 2.54 LINK OE1 GLU A 868 CA CA A1002 1555 1555 2.62 LINK OE2 GLU A 870 CA CA A1001 1555 1555 2.48 LINK OE1 GLU A 870 CA CA A1001 1555 1555 2.60 LINK OE2 GLU A 870 CA CA A1002 1555 1555 2.25 LINK OD1 ASN A 872 CA CA A1001 1555 1555 2.36 LINK OD1 ASN A 873 CA CA A1001 1555 1555 2.37 LINK O THR A 891 CA CA A1002 1555 1555 2.36 LINK OD1 ASP A 897 CA CA A1001 1555 1555 2.33 LINK OD2 ASP A 897 CA CA A1002 1555 1555 2.49 LINK O GLN A 898 CA CA A1001 1555 1555 2.36 LINK OD1 ASP A 899 CA CA A1001 1555 1555 2.34 LINK OD2 ASP A 899 CA CA A1002 1555 1555 2.48 LINK OD1 ASP A 899 CA CA A1002 1555 1555 2.55 LINK CA CA A1002 O HOH A1103 1555 1555 2.42 LINK OE2 GLU B 868 CA CA B1002 1555 1555 2.39 LINK OE1 GLU B 868 CA CA B1002 1555 1555 2.57 LINK OE2 GLU B 870 CA CA B1001 1555 1555 2.47 LINK OE1 GLU B 870 CA CA B1001 1555 1555 2.55 LINK OE2 GLU B 870 CA CA B1002 1555 1555 2.29 LINK OD1 ASN B 872 CA CA B1001 1555 1555 2.37 LINK OD1 ASN B 873 CA CA B1001 1555 1555 2.33 LINK O THR B 891 CA CA B1002 1555 1555 2.27 LINK OD1 ASP B 897 CA CA B1001 1555 1555 2.24 LINK OD2 ASP B 897 CA CA B1002 1555 1555 2.43 LINK O GLN B 898 CA CA B1001 1555 1555 2.36 LINK OD1 ASP B 899 CA CA B1001 1555 1555 2.43 LINK OD2 ASP B 899 CA CA B1002 1555 1555 2.51 LINK OD1 ASP B 899 CA CA B1002 1555 1555 2.55 LINK CA CA B1002 O HOH B1107 1555 1555 2.46 LINK OE2 GLU C 868 CA CA C1002 1555 1555 2.48 LINK OE1 GLU C 868 CA CA C1002 1555 1555 2.66 LINK OE2 GLU C 870 CA CA C1001 1555 1555 2.46 LINK OE1 GLU C 870 CA CA C1001 1555 1555 2.51 LINK OE2 GLU C 870 CA CA C1002 1555 1555 2.28 LINK OD1 ASN C 872 CA CA C1001 1555 1555 2.32 LINK OD1 ASN C 873 CA CA C1001 1555 1555 2.23 LINK O THR C 891 CA CA C1002 1555 1555 2.28 LINK OD1 ASP C 897 CA CA C1001 1555 1555 2.32 LINK OD2 ASP C 897 CA CA C1002 1555 1555 2.51 LINK O GLN C 898 CA CA C1001 1555 1555 2.40 LINK OD1 ASP C 899 CA CA C1001 1555 1555 2.36 LINK OD2 ASP C 899 CA CA C1002 1555 1555 2.51 LINK OD1 ASP C 899 CA CA C1002 1555 1555 2.54 LINK CA CA C1002 O HOH C1107 1555 1555 2.52 CISPEP 1 GLU A 870 PRO A 871 0 -2.03 CISPEP 2 GLY A 880 PRO A 881 0 -0.21 CISPEP 3 GLU B 870 PRO B 871 0 -3.50 CISPEP 4 GLY B 880 PRO B 881 0 1.40 CISPEP 5 GLU C 870 PRO C 871 0 0.82 CISPEP 6 GLY C 880 PRO C 881 0 -0.99 SITE 1 AC1 6 GLU A 870 ASN A 872 ASN A 873 ASP A 897 SITE 2 AC1 6 GLN A 898 ASP A 899 SITE 1 AC2 6 GLU A 868 GLU A 870 THR A 891 ASP A 897 SITE 2 AC2 6 ASP A 899 HOH A1103 SITE 1 AC3 6 GLU B 870 ASN B 872 ASN B 873 ASP B 897 SITE 2 AC3 6 GLN B 898 ASP B 899 SITE 1 AC4 6 GLU B 868 GLU B 870 THR B 891 ASP B 897 SITE 2 AC4 6 ASP B 899 HOH B1107 SITE 1 AC5 6 GLU C 870 ASN C 872 ASN C 873 ASP C 897 SITE 2 AC5 6 GLN C 898 ASP C 899 SITE 1 AC6 6 GLU C 868 GLU C 870 THR C 891 ASP C 897 SITE 2 AC6 6 ASP C 899 HOH C1107 CRYST1 62.001 64.180 95.375 90.00 90.00 90.00 P 21 21 21 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016129 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015581 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010485 0.00000