HEADER TRANSFERASE 08-SEP-09 3JR1 TITLE CRYSTAL STRUCTURE OF PUTATIVE FRUCTOSAMINE-3-KINASE (YP_719053.1) FROM TITLE 2 HAEMOPHILUS SOMNUS 129PT AT 2.32 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE FRUCTOSAMINE-3-KINASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HAEMOPHILUS SOMNUS 129PT; SOURCE 3 ORGANISM_COMMON: HISTOPHILUS SOMNI (STRAIN 129PT); SOURCE 4 ORGANISM_TAXID: 205914; SOURCE 5 STRAIN: 129PT; SOURCE 6 GENE: HS_0843, YP_719053.1; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS YP_719053.1, PUTATIVE FRUCTOSAMINE-3-KINASE, STRUCTURAL GENOMICS, KEYWDS 2 JOINT CENTER FOR STRUCTURAL GENOMICS, JCSG, PROTEIN STRUCTURE KEYWDS 3 INITIATIVE, PSI-2, FRUCTOSAMINE KINASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 3 24-JUL-19 3JR1 1 REMARK LINK REVDAT 2 01-NOV-17 3JR1 1 REMARK REVDAT 1 15-SEP-09 3JR1 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF PUTATIVE FRUCTOSAMINE-3-KINASE JRNL TITL 2 (YP_719053.1) FROM HAEMOPHILUS SOMNUS 129PT AT 2.32 A JRNL TITL 3 RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.32 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0072 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.32 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.67 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 36280 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.202 REMARK 3 R VALUE (WORKING SET) : 0.199 REMARK 3 FREE R VALUE : 0.244 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1813 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.32 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.38 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2566 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.26 REMARK 3 BIN R VALUE (WORKING SET) : 0.2760 REMARK 3 BIN FREE R VALUE SET COUNT : 124 REMARK 3 BIN FREE R VALUE : 0.3170 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4847 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 32 REMARK 3 SOLVENT ATOMS : 162 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 31.51 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.01 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.74000 REMARK 3 B22 (A**2) : -0.23000 REMARK 3 B33 (A**2) : -0.27000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -1.64000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.283 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.221 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.163 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 15.419 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.937 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.906 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5053 ; 0.012 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 3378 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6871 ; 1.504 ; 1.934 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8225 ; 1.010 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 607 ; 3.254 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 260 ;33.361 ;24.769 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 836 ;11.244 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;15.228 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 724 ; 0.093 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5650 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1086 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2970 ; 0.979 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1199 ; 0.177 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4799 ; 1.960 ; 4.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2083 ; 3.241 ; 6.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2063 ; 4.581 ; 8.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 3 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A -5 A 269 4 REMARK 3 1 B -5 B 269 4 REMARK 3 2 A 270 A 275 6 REMARK 3 2 B 270 B 275 6 REMARK 3 3 A 276 A 289 4 REMARK 3 3 B 276 B 289 4 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 1 A (A): 3903 ; 0.230 ; 0.500 REMARK 3 LOOSE POSITIONAL 1 A (A): 63 ; 1.160 ; 5.000 REMARK 3 MEDIUM THERMAL 1 A (A**2): 3903 ; 0.510 ; 2.000 REMARK 3 LOOSE THERMAL 1 A (A**2): 63 ; 0.610 ;10.000 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A -5 A 290 REMARK 3 ORIGIN FOR THE GROUP (A): 47.0074 39.1493 8.3679 REMARK 3 T TENSOR REMARK 3 T11: 0.1478 T22: 0.1425 REMARK 3 T33: 0.1330 T12: -0.0029 REMARK 3 T13: 0.0128 T23: -0.0125 REMARK 3 L TENSOR REMARK 3 L11: 0.5562 L22: 0.5895 REMARK 3 L33: 0.4703 L12: -0.0772 REMARK 3 L13: 0.2042 L23: -0.1451 REMARK 3 S TENSOR REMARK 3 S11: 0.0148 S12: 0.0708 S13: -0.0216 REMARK 3 S21: -0.0664 S22: -0.0161 S23: -0.0220 REMARK 3 S31: 0.0579 S32: 0.0471 S33: 0.0014 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B -5 B 289 REMARK 3 ORIGIN FOR THE GROUP (A): 77.1701 20.2338 49.1759 REMARK 3 T TENSOR REMARK 3 T11: 0.1211 T22: 0.1288 REMARK 3 T33: 0.1359 T12: 0.0123 REMARK 3 T13: 0.0126 T23: 0.0024 REMARK 3 L TENSOR REMARK 3 L11: 0.4900 L22: 0.5384 REMARK 3 L33: 0.5336 L12: 0.1615 REMARK 3 L13: 0.2483 L23: 0.0682 REMARK 3 S TENSOR REMARK 3 S11: -0.0003 S12: -0.0426 S13: 0.0586 REMARK 3 S21: 0.0180 S22: -0.0147 S23: 0.0630 REMARK 3 S31: -0.0282 S32: -0.0684 S33: 0.0151 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1. HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. 2. A MET-INHIBITION PROTOCOL WAS USED FOR REMARK 3 SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE REMARK 3 OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO REMARK 3 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET REMARK 3 INCORPORATION. 3. ETHYLENE GLYCRL (EDO) USED AS CRYOPROTECTANT REMARK 3 WAS MODELED INTO THE STRUCTURE. 4. UNKNOWN LIGANDS (UNL) WERE REMARK 3 MODELED INTO THE PUTATIVE ACTIVE SITES ON BOTH SUBUNITS IN THE REMARK 3 ASYMMETRIC UNIT. 5. TLS PARAMETERS WERE ASSIGNED WITH THE AID OF REMARK 3 THE TLS MOTION SERVER. REMARK 4 REMARK 4 3JR1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-SEP-09. REMARK 100 THE DEPOSITION ID IS D_1000055050. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-MAY-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91837,0.97936,0.97922 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : FLAT COLLIMATING MIRROR, TOROID REMARK 200 FOCUSING MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36282 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.320 REMARK 200 RESOLUTION RANGE LOW (A) : 27.671 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.7 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.12600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 5.9300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.32 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.40 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.3 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.54600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.26 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.88 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 5.0% POLYETHYLENE GLYCOL 6000, 0.1M REMARK 280 TRIS PH 8.0, ADDITIVE: 0.001 M ADENOSINE 5'-[GAMMA-THIO] REMARK 280 TRIPHOSPHATE, NANODROP', VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 68.65400 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 42.81350 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 68.65400 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 42.81350 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A -18 REMARK 465 GLY A -17 REMARK 465 SER A -16 REMARK 465 ASP A -15 REMARK 465 LYS A -14 REMARK 465 ILE A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 HIS A -9 REMARK 465 HIS A -8 REMARK 465 HIS A -7 REMARK 465 GLU A -6 REMARK 465 ILE A 291 REMARK 465 ASP A 292 REMARK 465 LYS A 293 REMARK 465 MSE B -18 REMARK 465 GLY B -17 REMARK 465 SER B -16 REMARK 465 ASP B -15 REMARK 465 LYS B -14 REMARK 465 ILE B -13 REMARK 465 HIS B -12 REMARK 465 HIS B -11 REMARK 465 HIS B -10 REMARK 465 HIS B -9 REMARK 465 HIS B -8 REMARK 465 HIS B -7 REMARK 465 GLU B -6 REMARK 465 LYS B 290 REMARK 465 ILE B 291 REMARK 465 ASP B 292 REMARK 465 LYS B 293 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN A -5 CG OD1 ND2 REMARK 470 GLN A -1 CD OE1 NE2 REMARK 470 GLU A 49 CD OE1 OE2 REMARK 470 LYS A 68 CE NZ REMARK 470 LYS A 96 CG CD CE NZ REMARK 470 LYS A 98 CG CD CE NZ REMARK 470 LYS A 100 CE NZ REMARK 470 LYS A 161 CE NZ REMARK 470 LYS A 163 CE NZ REMARK 470 LYS A 183 CD CE NZ REMARK 470 GLU A 248 CG CD OE1 OE2 REMARK 470 LYS A 272 CD CE NZ REMARK 470 LYS A 273 CG CD CE NZ REMARK 470 GLN A 274 CG CD OE1 NE2 REMARK 470 LYS A 282 CD CE NZ REMARK 470 LYS A 290 CG CD CE NZ REMARK 470 LYS B 3 CD CE NZ REMARK 470 GLU B 11 CG CD OE1 OE2 REMARK 470 GLU B 49 CD OE1 OE2 REMARK 470 LYS B 98 CG CD CE NZ REMARK 470 LYS B 161 CE NZ REMARK 470 LYS B 183 CE NZ REMARK 470 LYS B 272 CG CD CE NZ REMARK 470 LYS B 273 CE NZ REMARK 470 LYS B 282 CD CE NZ REMARK 470 HIS B 289 CG ND1 CD2 CE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 39 0.92 83.24 REMARK 500 VAL A 40 -54.19 -138.41 REMARK 500 SER A 71 -91.39 -126.64 REMARK 500 ARG A 152 -73.16 -112.86 REMARK 500 ASN A 194 42.20 -143.80 REMARK 500 ASP A 204 -116.19 56.37 REMARK 500 ALA A 213 49.18 -141.42 REMARK 500 TYR A 215 162.85 176.92 REMARK 500 PHE A 229 -129.19 -99.79 REMARK 500 LYS A 272 -70.70 -98.84 REMARK 500 GLN A 274 -27.96 82.33 REMARK 500 GLU B 39 -10.54 89.12 REMARK 500 VAL B 40 -61.65 -125.55 REMARK 500 SER B 71 -92.31 -124.76 REMARK 500 SER B 83 -167.86 -123.72 REMARK 500 ARG B 152 -69.11 -120.89 REMARK 500 ASN B 194 41.71 -148.35 REMARK 500 ASP B 204 -112.78 56.68 REMARK 500 ALA B 213 53.85 -149.76 REMARK 500 PHE B 229 -122.74 -107.65 REMARK 500 LEU B 288 -76.76 -97.55 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNL A 294 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 295 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 296 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNL B 294 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 295 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 386978 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 SEQUENCE THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG REMARK 999 MGSDKIHHHHHHENLYFQG FOLLOWED BY THE TARGET SEQUENCE. DBREF 3JR1 A 1 293 UNP Q0I3M3 Q0I3M3_HAES1 42 334 DBREF 3JR1 B 1 293 UNP Q0I3M3 Q0I3M3_HAES1 42 334 SEQADV 3JR1 MSE A -18 UNP Q0I3M3 EXPRESSION TAG SEQADV 3JR1 GLY A -17 UNP Q0I3M3 EXPRESSION TAG SEQADV 3JR1 SER A -16 UNP Q0I3M3 EXPRESSION TAG SEQADV 3JR1 ASP A -15 UNP Q0I3M3 EXPRESSION TAG SEQADV 3JR1 LYS A -14 UNP Q0I3M3 EXPRESSION TAG SEQADV 3JR1 ILE A -13 UNP Q0I3M3 EXPRESSION TAG SEQADV 3JR1 HIS A -12 UNP Q0I3M3 EXPRESSION TAG SEQADV 3JR1 HIS A -11 UNP Q0I3M3 EXPRESSION TAG SEQADV 3JR1 HIS A -10 UNP Q0I3M3 EXPRESSION TAG SEQADV 3JR1 HIS A -9 UNP Q0I3M3 EXPRESSION TAG SEQADV 3JR1 HIS A -8 UNP Q0I3M3 EXPRESSION TAG SEQADV 3JR1 HIS A -7 UNP Q0I3M3 EXPRESSION TAG SEQADV 3JR1 GLU A -6 UNP Q0I3M3 EXPRESSION TAG SEQADV 3JR1 ASN A -5 UNP Q0I3M3 EXPRESSION TAG SEQADV 3JR1 LEU A -4 UNP Q0I3M3 EXPRESSION TAG SEQADV 3JR1 TYR A -3 UNP Q0I3M3 EXPRESSION TAG SEQADV 3JR1 PHE A -2 UNP Q0I3M3 EXPRESSION TAG SEQADV 3JR1 GLN A -1 UNP Q0I3M3 EXPRESSION TAG SEQADV 3JR1 GLY A 0 UNP Q0I3M3 EXPRESSION TAG SEQADV 3JR1 MSE B -18 UNP Q0I3M3 EXPRESSION TAG SEQADV 3JR1 GLY B -17 UNP Q0I3M3 EXPRESSION TAG SEQADV 3JR1 SER B -16 UNP Q0I3M3 EXPRESSION TAG SEQADV 3JR1 ASP B -15 UNP Q0I3M3 EXPRESSION TAG SEQADV 3JR1 LYS B -14 UNP Q0I3M3 EXPRESSION TAG SEQADV 3JR1 ILE B -13 UNP Q0I3M3 EXPRESSION TAG SEQADV 3JR1 HIS B -12 UNP Q0I3M3 EXPRESSION TAG SEQADV 3JR1 HIS B -11 UNP Q0I3M3 EXPRESSION TAG SEQADV 3JR1 HIS B -10 UNP Q0I3M3 EXPRESSION TAG SEQADV 3JR1 HIS B -9 UNP Q0I3M3 EXPRESSION TAG SEQADV 3JR1 HIS B -8 UNP Q0I3M3 EXPRESSION TAG SEQADV 3JR1 HIS B -7 UNP Q0I3M3 EXPRESSION TAG SEQADV 3JR1 GLU B -6 UNP Q0I3M3 EXPRESSION TAG SEQADV 3JR1 ASN B -5 UNP Q0I3M3 EXPRESSION TAG SEQADV 3JR1 LEU B -4 UNP Q0I3M3 EXPRESSION TAG SEQADV 3JR1 TYR B -3 UNP Q0I3M3 EXPRESSION TAG SEQADV 3JR1 PHE B -2 UNP Q0I3M3 EXPRESSION TAG SEQADV 3JR1 GLN B -1 UNP Q0I3M3 EXPRESSION TAG SEQADV 3JR1 GLY B 0 UNP Q0I3M3 EXPRESSION TAG SEQRES 1 A 312 MSE GLY SER ASP LYS ILE HIS HIS HIS HIS HIS HIS GLU SEQRES 2 A 312 ASN LEU TYR PHE GLN GLY MSE TRP LYS SER ILE SER GLN SEQRES 3 A 312 VAL LEU ALA GLU GLN PHE GLY ALA TYR TYR PHE ILE LYS SEQRES 4 A 312 HIS LYS GLU LYS LEU TYR SER GLY GLU MSE ASN GLU ILE SEQRES 5 A 312 TRP LEU ILE ASN ASP GLU VAL GLN THR VAL PHE VAL LYS SEQRES 6 A 312 ILE ASN GLU ARG SER TYR ARG SER MSE PHE ARG ALA GLU SEQRES 7 A 312 ALA ASP GLN LEU ALA LEU LEU ALA LYS THR ASN SER ILE SEQRES 8 A 312 ASN VAL PRO LEU VAL TYR GLY ILE GLY ASN SER GLN GLY SEQRES 9 A 312 HIS SER PHE LEU LEU LEU GLU ALA LEU ASN LYS SER LYS SEQRES 10 A 312 ASN LYS GLN SER SER PHE THR ILE PHE ALA GLU LYS ILE SEQRES 11 A 312 ALA GLN LEU HIS GLN ILE GLN GLY PRO ASP LYS TYR GLY SEQRES 12 A 312 LEU ASP PHE ASP THR TRP LEU GLY PRO ILE TYR GLN PRO SEQRES 13 A 312 ASN ASP TRP GLN THR SER TRP ALA LYS PHE PHE SER GLU SEQRES 14 A 312 ASN ARG ILE GLY TRP GLN LEU GLN ILE CYS LYS GLU LYS SEQRES 15 A 312 GLY LEU ILE PHE GLY ASN ILE ASP LEU ILE VAL GLN ILE SEQRES 16 A 312 VAL ALA ASP THR LEU SER LYS HIS ASN PRO LYS PRO SER SEQRES 17 A 312 ILE LEU HIS GLY ASN LEU TRP ILE GLU ASN CYS ILE GLN SEQRES 18 A 312 VAL ASP ASP LYS ILE PHE VAL CYS ASN PRO ALA CYS TYR SEQRES 19 A 312 TRP GLY ASP ARG GLU CYS ASP ILE ALA PHE SER SER LEU SEQRES 20 A 312 PHE GLU PRO PHE PRO THR ASN PHE TYR GLN ARG TYR ASN SEQRES 21 A 312 GLU ILE TYR PRO LEU GLU GLU GLY TYR LEU GLU ARG LYS SEQRES 22 A 312 LEU ILE TYR GLN LEU TYR TYR LEU LEU ASN PHE SER TYR SEQRES 23 A 312 ARG TYR TYR ASN LYS LYS GLN SER TYR VAL SER LEU THR SEQRES 24 A 312 GLN LYS LEU ILE ASN GLN ILE LEU HIS LYS ILE ASP LYS SEQRES 1 B 312 MSE GLY SER ASP LYS ILE HIS HIS HIS HIS HIS HIS GLU SEQRES 2 B 312 ASN LEU TYR PHE GLN GLY MSE TRP LYS SER ILE SER GLN SEQRES 3 B 312 VAL LEU ALA GLU GLN PHE GLY ALA TYR TYR PHE ILE LYS SEQRES 4 B 312 HIS LYS GLU LYS LEU TYR SER GLY GLU MSE ASN GLU ILE SEQRES 5 B 312 TRP LEU ILE ASN ASP GLU VAL GLN THR VAL PHE VAL LYS SEQRES 6 B 312 ILE ASN GLU ARG SER TYR ARG SER MSE PHE ARG ALA GLU SEQRES 7 B 312 ALA ASP GLN LEU ALA LEU LEU ALA LYS THR ASN SER ILE SEQRES 8 B 312 ASN VAL PRO LEU VAL TYR GLY ILE GLY ASN SER GLN GLY SEQRES 9 B 312 HIS SER PHE LEU LEU LEU GLU ALA LEU ASN LYS SER LYS SEQRES 10 B 312 ASN LYS GLN SER SER PHE THR ILE PHE ALA GLU LYS ILE SEQRES 11 B 312 ALA GLN LEU HIS GLN ILE GLN GLY PRO ASP LYS TYR GLY SEQRES 12 B 312 LEU ASP PHE ASP THR TRP LEU GLY PRO ILE TYR GLN PRO SEQRES 13 B 312 ASN ASP TRP GLN THR SER TRP ALA LYS PHE PHE SER GLU SEQRES 14 B 312 ASN ARG ILE GLY TRP GLN LEU GLN ILE CYS LYS GLU LYS SEQRES 15 B 312 GLY LEU ILE PHE GLY ASN ILE ASP LEU ILE VAL GLN ILE SEQRES 16 B 312 VAL ALA ASP THR LEU SER LYS HIS ASN PRO LYS PRO SER SEQRES 17 B 312 ILE LEU HIS GLY ASN LEU TRP ILE GLU ASN CYS ILE GLN SEQRES 18 B 312 VAL ASP ASP LYS ILE PHE VAL CYS ASN PRO ALA CYS TYR SEQRES 19 B 312 TRP GLY ASP ARG GLU CYS ASP ILE ALA PHE SER SER LEU SEQRES 20 B 312 PHE GLU PRO PHE PRO THR ASN PHE TYR GLN ARG TYR ASN SEQRES 21 B 312 GLU ILE TYR PRO LEU GLU GLU GLY TYR LEU GLU ARG LYS SEQRES 22 B 312 LEU ILE TYR GLN LEU TYR TYR LEU LEU ASN PHE SER TYR SEQRES 23 B 312 ARG TYR TYR ASN LYS LYS GLN SER TYR VAL SER LEU THR SEQRES 24 B 312 GLN LYS LEU ILE ASN GLN ILE LEU HIS LYS ILE ASP LYS MODRES 3JR1 MSE A 1 MET SELENOMETHIONINE MODRES 3JR1 MSE A 30 MET SELENOMETHIONINE MODRES 3JR1 MSE A 55 MET SELENOMETHIONINE MODRES 3JR1 MSE B 1 MET SELENOMETHIONINE MODRES 3JR1 MSE B 30 MET SELENOMETHIONINE MODRES 3JR1 MSE B 55 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 30 13 HET MSE A 55 8 HET MSE B 1 8 HET MSE B 30 8 HET MSE B 55 8 HET UNL A 294 10 HET EDO A 295 4 HET EDO A 296 4 HET UNL B 294 10 HET EDO B 295 4 HETNAM MSE SELENOMETHIONINE HETNAM UNL UNKNOWN LIGAND HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 1 MSE 6(C5 H11 N O2 SE) FORMUL 4 EDO 3(C2 H6 O2) FORMUL 8 HOH *162(H2 O) HELIX 1 1 ASN A -5 GLY A 14 1 20 HELIX 2 2 TYR A 52 THR A 69 1 18 HELIX 3 3 SER A 102 ILE A 117 1 16 HELIX 4 4 SER A 143 ARG A 152 1 10 HELIX 5 5 ARG A 152 GLY A 164 1 13 HELIX 6 6 ASN A 169 SER A 182 1 14 HELIX 7 7 TRP A 196 GLU A 198 5 3 HELIX 8 8 ARG A 219 SER A 227 1 9 HELIX 9 9 PRO A 233 TYR A 244 1 12 HELIX 10 10 GLY A 249 TYR A 270 1 22 HELIX 11 11 GLN A 274 HIS A 289 1 16 HELIX 12 12 ASN B -5 GLY B 14 1 20 HELIX 13 13 TYR B 52 THR B 69 1 18 HELIX 14 14 SER B 102 ILE B 117 1 16 HELIX 15 15 SER B 143 ARG B 152 1 10 HELIX 16 16 ARG B 152 GLY B 164 1 13 HELIX 17 17 ASN B 169 LEU B 181 1 13 HELIX 18 18 TRP B 196 GLU B 198 5 3 HELIX 19 19 ARG B 219 SER B 227 1 9 HELIX 20 20 PRO B 233 TYR B 244 1 12 HELIX 21 21 GLY B 249 TYR B 269 1 21 HELIX 22 22 SER B 275 HIS B 289 1 15 SHEET 1 A 5 HIS A 21 LEU A 25 0 SHEET 2 A 5 GLU A 32 ASN A 37 -1 O LEU A 35 N GLU A 23 SHEET 3 A 5 THR A 42 GLU A 49 -1 O VAL A 43 N ILE A 36 SHEET 4 A 5 HIS A 86 GLU A 92 -1 O LEU A 91 N PHE A 44 SHEET 5 A 5 VAL A 77 ASN A 82 -1 N TYR A 78 O LEU A 90 SHEET 1 B 2 THR A 129 LEU A 131 0 SHEET 2 B 2 ILE A 134 GLN A 136 -1 O GLN A 136 N THR A 129 SHEET 1 C 2 SER A 189 LEU A 191 0 SHEET 2 C 2 TYR A 215 GLY A 217 -1 O GLY A 217 N SER A 189 SHEET 1 D 2 CYS A 200 VAL A 203 0 SHEET 2 D 2 LYS A 206 VAL A 209 -1 O LYS A 206 N VAL A 203 SHEET 1 E 5 HIS B 21 LEU B 25 0 SHEET 2 E 5 GLU B 32 ASN B 37 -1 O LEU B 35 N GLU B 23 SHEET 3 E 5 THR B 42 GLU B 49 -1 O VAL B 45 N TRP B 34 SHEET 4 E 5 HIS B 86 GLU B 92 -1 O LEU B 91 N PHE B 44 SHEET 5 E 5 VAL B 77 ASN B 82 -1 N TYR B 78 O LEU B 90 SHEET 1 F 2 THR B 129 LEU B 131 0 SHEET 2 F 2 ILE B 134 GLN B 136 -1 O GLN B 136 N THR B 129 SHEET 1 G 2 SER B 189 LEU B 191 0 SHEET 2 G 2 TYR B 215 GLY B 217 -1 O TYR B 215 N LEU B 191 SHEET 1 H 2 CYS B 200 VAL B 203 0 SHEET 2 H 2 LYS B 206 VAL B 209 -1 O LYS B 206 N VAL B 203 LINK C GLY A 0 N MSE A 1 1555 1555 1.33 LINK C MSE A 1 N TRP A 2 1555 1555 1.34 LINK C GLU A 29 N MSE A 30 1555 1555 1.34 LINK C MSE A 30 N ASN A 31 1555 1555 1.33 LINK C SER A 54 N MSE A 55 1555 1555 1.33 LINK C MSE A 55 N PHE A 56 1555 1555 1.35 LINK C GLY B 0 N MSE B 1 1555 1555 1.32 LINK C MSE B 1 N TRP B 2 1555 1555 1.33 LINK C GLU B 29 N MSE B 30 1555 1555 1.34 LINK C MSE B 30 N ASN B 31 1555 1555 1.33 LINK C SER B 54 N MSE B 55 1555 1555 1.34 LINK C MSE B 55 N PHE B 56 1555 1555 1.34 SITE 1 AC1 6 PHE A 44 LYS A 46 GLU A 92 LEU A 94 SITE 2 AC1 6 CYS A 210 ASN A 211 SITE 1 AC2 2 LEU A 125 ASP A 126 SITE 1 AC3 4 ALA A 67 ASN A 70 ILE A 72 HOH A 370 SITE 1 AC4 7 PHE B 44 LYS B 46 GLU B 92 LEU B 94 SITE 2 AC4 7 CYS B 210 ASN B 211 HOH B 347 SITE 1 AC5 5 ASN B 194 TRP B 196 ASN B 199 PHE B 265 SITE 2 AC5 5 ARG B 268 CRYST1 137.308 85.627 99.009 90.00 132.92 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007283 0.000000 0.006772 0.00000 SCALE2 0.000000 0.011679 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013792 0.00000