HEADER BIOSYNTHETIC PROTEIN 08-SEP-09 3JR2 TITLE X-RAY CRYSTAL STRUCTURE OF THE MG-BOUND 3-KETO-L-GULONATE-6-PHOSPHATE TITLE 2 DECARBOXYLASE FROM VIBRIO CHOLERAE O1 BIOVAR EL TOR STR. N16961 COMPND MOL_ID: 1; COMPND 2 MOLECULE: HEXULOSE-6-PHOSPHATE SYNTHASE SGBH; COMPND 3 CHAIN: A, B, C, D; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VIBRIO CHOLERAE; SOURCE 3 ORGANISM_TAXID: 666; SOURCE 4 STRAIN: N16961; SOURCE 5 GENE: VC_A0242; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21MAGIC; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PMCSG19C KEYWDS 3-KETO-L-GULONATE-6-PHOSPHATE DECARBOXYLASE, ULAD, CSGID, MG-BOUND, KEYWDS 2 BIOSYNTHETIC PROTEIN, STRUCTURAL GENOMICS, CENTER FOR STRUCTURAL KEYWDS 3 GENOMICS OF INFECTIOUS DISEASES EXPDTA X-RAY DIFFRACTION AUTHOR B.NOCEK,N.MALTSEVA,J.STAM,W.ANDERSON,A.JOACHIMIAK,CSGID,CENTER FOR AUTHOR 2 STRUCTURAL GENOMICS OF INFECTIOUS DISEASES (CSGID) REVDAT 6 22-NOV-23 3JR2 1 REMARK REVDAT 5 06-SEP-23 3JR2 1 REMARK SEQADV LINK REVDAT 4 24-JAN-18 3JR2 1 AUTHOR REVDAT 3 08-FEB-17 3JR2 1 AUTHOR JRNL KEYWDS REVDAT 2 13-JUL-11 3JR2 1 VERSN REVDAT 1 13-OCT-09 3JR2 0 JRNL AUTH B.NOCEK,N.MALTSEVA,J.STAM,W.ANDERSON,A.JOACHIMIAK,CSGID JRNL TITL CRYSTAL STRUCTURE OF THE MG-BOUND JRNL TITL 2 3-KETO-L-GULONATE-6-PHOSPHATE DECARBOXYLASE FROM VIBRIO JRNL TITL 3 CHOLERAE O1 BIOVAR EL TOR STR. N16961 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0102 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 87622 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.165 REMARK 3 R VALUE (WORKING SET) : 0.163 REMARK 3 FREE R VALUE : 0.202 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4619 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 6341 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.55 REMARK 3 BIN R VALUE (WORKING SET) : 0.2410 REMARK 3 BIN FREE R VALUE SET COUNT : 346 REMARK 3 BIN FREE R VALUE : 0.2910 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6450 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 97 REMARK 3 SOLVENT ATOMS : 766 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 29.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 14.29 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.23000 REMARK 3 B22 (A**2) : 0.45000 REMARK 3 B33 (A**2) : 0.78000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.107 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.108 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.071 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.939 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.964 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.946 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6721 ; 0.019 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 4325 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9135 ; 1.642 ; 1.947 REMARK 3 BOND ANGLES OTHERS (DEGREES): 10615 ; 0.959 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 878 ; 5.651 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 281 ;37.211 ;24.875 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1124 ;13.298 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 34 ;17.664 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1066 ; 0.101 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 7507 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1291 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 4252 ; 0.984 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1771 ; 0.322 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 6813 ; 1.745 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2469 ; 3.089 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2309 ; 4.794 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 4 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 3 A 214 REMARK 3 RESIDUE RANGE : B 3 B 214 REMARK 3 RESIDUE RANGE : C 3 C 214 REMARK 3 RESIDUE RANGE : D 3 D 214 REMARK 3 ORIGIN FOR THE GROUP (A): -18.8239 16.8815 21.0685 REMARK 3 T TENSOR REMARK 3 T11: 0.0103 T22: 0.0024 REMARK 3 T33: 0.0059 T12: 0.0038 REMARK 3 T13: 0.0007 T23: 0.0026 REMARK 3 L TENSOR REMARK 3 L11: 0.2610 L22: 0.0854 REMARK 3 L33: 0.0301 L12: 0.0624 REMARK 3 L13: -0.0512 L23: -0.0302 REMARK 3 S TENSOR REMARK 3 S11: -0.0068 S12: -0.0149 S13: -0.0205 REMARK 3 S21: -0.0090 S22: -0.0014 S23: 0.0060 REMARK 3 S31: 0.0064 S32: 0.0054 S33: 0.0082 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3JR2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-SEP-09. REMARK 100 THE DEPOSITION ID IS D_1000055051. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-JUL-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9794 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 92551 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 4.700 REMARK 200 R MERGE (I) : 0.11300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.83 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 4.70 REMARK 200 R MERGE FOR SHELL (I) : 0.72000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 3IEB REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.60 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 41.15250 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 62.78850 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 47.85550 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 62.78850 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 41.15250 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 47.85550 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4530 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17450 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -98.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4900 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17380 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -85.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A -2 REMARK 465 ASN A -1 REMARK 465 ALA A 0 REMARK 465 MSE A 1 REMARK 465 PRO A 215 REMARK 465 SER B -2 REMARK 465 ASN B -1 REMARK 465 ALA B 0 REMARK 465 MSE B 1 REMARK 465 THR B 2 REMARK 465 SER C -2 REMARK 465 ASN C -1 REMARK 465 ALA C 0 REMARK 465 MSE C 1 REMARK 465 SER D -2 REMARK 465 ASN D -1 REMARK 465 ALA D 0 REMARK 465 MSE D 1 REMARK 465 THR D 2 REMARK 465 PRO D 215 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 PRO B 215 CG CD REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 550 O HOH B 702 4555 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MSE A 156 CG - SE - CE ANGL. DEV. = -19.0 DEGREES REMARK 500 MSE D 156 CG - SE - CE ANGL. DEV. = -18.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN B 116 58.66 -91.70 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A3001 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 33 OE2 REMARK 620 2 ASP A 62 OD2 90.2 REMARK 620 3 HOH A 249 O 90.4 176.7 REMARK 620 4 HOH A 258 O 87.2 91.3 91.9 REMARK 620 5 HOH A 284 O 98.9 88.9 87.8 173.8 REMARK 620 6 HOH A 285 O 170.4 91.6 88.4 83.3 90.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A3002 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 275 O REMARK 620 2 HOH A 790 O 84.3 REMARK 620 3 HOH A 791 O 95.1 89.6 REMARK 620 4 HOH A 792 O 89.3 173.1 88.6 REMARK 620 5 HOH A 793 O 157.7 102.9 106.0 84.0 REMARK 620 6 HOH A 794 O 88.7 95.4 174.0 86.9 69.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B3001 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 33 OE2 REMARK 620 2 ASP B 62 OD2 92.1 REMARK 620 3 HOH B 239 O 93.3 90.6 REMARK 620 4 HOH B 249 O 87.0 176.5 86.0 REMARK 620 5 HOH B 302 O 172.6 92.5 92.4 88.7 REMARK 620 6 HOH B 304 O 89.1 98.5 170.5 84.9 84.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B3002 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 52 NE2 REMARK 620 2 HOH B 531 O 85.4 REMARK 620 3 HOH B 774 O 166.7 91.4 REMARK 620 4 HOH B 775 O 88.8 88.9 78.3 REMARK 620 5 HOH C 266 O 94.4 93.8 98.6 175.9 REMARK 620 6 HOH C 505 O 90.9 176.2 92.0 90.0 87.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG C3001 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU C 33 OE2 REMARK 620 2 ASP C 62 OD2 91.0 REMARK 620 3 HOH C 230 O 92.1 92.0 REMARK 620 4 HOH C 255 O 177.1 87.2 85.7 REMARK 620 5 HOH C 258 O 90.6 85.1 176.1 91.5 REMARK 620 6 HOH C 271 O 87.6 172.3 95.6 94.5 87.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG C3002 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS C 136 NE2 REMARK 620 2 HOH C 269 O 86.2 REMARK 620 3 HOH C 272 O 178.2 92.0 REMARK 620 4 HOH C 273 O 90.8 83.0 89.1 REMARK 620 5 HOH C 274 O 85.8 87.8 94.0 170.3 REMARK 620 6 HOH C 276 O 83.4 166.3 98.4 88.3 100.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG D3001 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU D 33 OE2 REMARK 620 2 ASP D 62 OD2 91.0 REMARK 620 3 HOH D 248 O 88.0 178.6 REMARK 620 4 HOH D 249 O 87.7 89.3 89.7 REMARK 620 5 HOH D 250 O 175.0 87.2 93.8 87.6 REMARK 620 6 HOH D 251 O 92.6 85.5 95.5 174.8 91.9 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 902 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 3001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 3002 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 3001 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 3002 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO C 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO C 902 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 C 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 C 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 C 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG C 3002 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG C 3001 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL D 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL D 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO D 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 D 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG D 3001 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3IEB RELATED DB: PDB REMARK 900 RELATED ID: IDP01486 RELATED DB: TARGETDB DBREF 3JR2 A 1 215 UNP Q9KMS8 Q9KMS8_VIBCH 1 215 DBREF 3JR2 B 1 215 UNP Q9KMS8 Q9KMS8_VIBCH 1 215 DBREF 3JR2 C 1 215 UNP Q9KMS8 Q9KMS8_VIBCH 1 215 DBREF 3JR2 D 1 215 UNP Q9KMS8 Q9KMS8_VIBCH 1 215 SEQADV 3JR2 SER A -2 UNP Q9KMS8 EXPRESSION TAG SEQADV 3JR2 ASN A -1 UNP Q9KMS8 EXPRESSION TAG SEQADV 3JR2 ALA A 0 UNP Q9KMS8 EXPRESSION TAG SEQADV 3JR2 SER B -2 UNP Q9KMS8 EXPRESSION TAG SEQADV 3JR2 ASN B -1 UNP Q9KMS8 EXPRESSION TAG SEQADV 3JR2 ALA B 0 UNP Q9KMS8 EXPRESSION TAG SEQADV 3JR2 SER C -2 UNP Q9KMS8 EXPRESSION TAG SEQADV 3JR2 ASN C -1 UNP Q9KMS8 EXPRESSION TAG SEQADV 3JR2 ALA C 0 UNP Q9KMS8 EXPRESSION TAG SEQADV 3JR2 SER D -2 UNP Q9KMS8 EXPRESSION TAG SEQADV 3JR2 ASN D -1 UNP Q9KMS8 EXPRESSION TAG SEQADV 3JR2 ALA D 0 UNP Q9KMS8 EXPRESSION TAG SEQRES 1 A 218 SER ASN ALA MSE THR LYS PRO MSE ILE GLN ILE ALA LEU SEQRES 2 A 218 ASP GLN THR ASN LEU THR ASP ALA VAL ALA VAL ALA SER SEQRES 3 A 218 ASN VAL ALA SER TYR VAL ASP VAL ILE GLU VAL GLY THR SEQRES 4 A 218 ILE LEU ALA PHE ALA GLU GLY MSE LYS ALA VAL SER THR SEQRES 5 A 218 LEU ARG HIS ASN HIS PRO ASN HIS ILE LEU VAL CYS ASP SEQRES 6 A 218 MSE LYS THR THR ASP GLY GLY ALA ILE LEU SER ARG MSE SEQRES 7 A 218 ALA PHE GLU ALA GLY ALA ASP TRP ILE THR VAL SER ALA SEQRES 8 A 218 ALA ALA HIS ILE ALA THR ILE ALA ALA CYS LYS LYS VAL SEQRES 9 A 218 ALA ASP GLU LEU ASN GLY GLU ILE GLN ILE GLU ILE TYR SEQRES 10 A 218 GLY ASN TRP THR MSE GLN ASP ALA LYS ALA TRP VAL ASP SEQRES 11 A 218 LEU GLY ILE THR GLN ALA ILE TYR HIS ARG SER ARG ASP SEQRES 12 A 218 ALA GLU LEU ALA GLY ILE GLY TRP THR THR ASP ASP LEU SEQRES 13 A 218 ASP LYS MSE ARG GLN LEU SER ALA LEU GLY ILE GLU LEU SEQRES 14 A 218 SER ILE THR GLY GLY ILE VAL PRO GLU ASP ILE TYR LEU SEQRES 15 A 218 PHE GLU GLY ILE LYS THR LYS THR PHE ILE ALA GLY ARG SEQRES 16 A 218 ALA LEU ALA GLY ALA GLU GLY GLN GLN THR ALA ALA ALA SEQRES 17 A 218 LEU ARG GLU GLN ILE ASP ARG PHE TRP PRO SEQRES 1 B 218 SER ASN ALA MSE THR LYS PRO MSE ILE GLN ILE ALA LEU SEQRES 2 B 218 ASP GLN THR ASN LEU THR ASP ALA VAL ALA VAL ALA SER SEQRES 3 B 218 ASN VAL ALA SER TYR VAL ASP VAL ILE GLU VAL GLY THR SEQRES 4 B 218 ILE LEU ALA PHE ALA GLU GLY MSE LYS ALA VAL SER THR SEQRES 5 B 218 LEU ARG HIS ASN HIS PRO ASN HIS ILE LEU VAL CYS ASP SEQRES 6 B 218 MSE LYS THR THR ASP GLY GLY ALA ILE LEU SER ARG MSE SEQRES 7 B 218 ALA PHE GLU ALA GLY ALA ASP TRP ILE THR VAL SER ALA SEQRES 8 B 218 ALA ALA HIS ILE ALA THR ILE ALA ALA CYS LYS LYS VAL SEQRES 9 B 218 ALA ASP GLU LEU ASN GLY GLU ILE GLN ILE GLU ILE TYR SEQRES 10 B 218 GLY ASN TRP THR MSE GLN ASP ALA LYS ALA TRP VAL ASP SEQRES 11 B 218 LEU GLY ILE THR GLN ALA ILE TYR HIS ARG SER ARG ASP SEQRES 12 B 218 ALA GLU LEU ALA GLY ILE GLY TRP THR THR ASP ASP LEU SEQRES 13 B 218 ASP LYS MSE ARG GLN LEU SER ALA LEU GLY ILE GLU LEU SEQRES 14 B 218 SER ILE THR GLY GLY ILE VAL PRO GLU ASP ILE TYR LEU SEQRES 15 B 218 PHE GLU GLY ILE LYS THR LYS THR PHE ILE ALA GLY ARG SEQRES 16 B 218 ALA LEU ALA GLY ALA GLU GLY GLN GLN THR ALA ALA ALA SEQRES 17 B 218 LEU ARG GLU GLN ILE ASP ARG PHE TRP PRO SEQRES 1 C 218 SER ASN ALA MSE THR LYS PRO MSE ILE GLN ILE ALA LEU SEQRES 2 C 218 ASP GLN THR ASN LEU THR ASP ALA VAL ALA VAL ALA SER SEQRES 3 C 218 ASN VAL ALA SER TYR VAL ASP VAL ILE GLU VAL GLY THR SEQRES 4 C 218 ILE LEU ALA PHE ALA GLU GLY MSE LYS ALA VAL SER THR SEQRES 5 C 218 LEU ARG HIS ASN HIS PRO ASN HIS ILE LEU VAL CYS ASP SEQRES 6 C 218 MSE LYS THR THR ASP GLY GLY ALA ILE LEU SER ARG MSE SEQRES 7 C 218 ALA PHE GLU ALA GLY ALA ASP TRP ILE THR VAL SER ALA SEQRES 8 C 218 ALA ALA HIS ILE ALA THR ILE ALA ALA CYS LYS LYS VAL SEQRES 9 C 218 ALA ASP GLU LEU ASN GLY GLU ILE GLN ILE GLU ILE TYR SEQRES 10 C 218 GLY ASN TRP THR MSE GLN ASP ALA LYS ALA TRP VAL ASP SEQRES 11 C 218 LEU GLY ILE THR GLN ALA ILE TYR HIS ARG SER ARG ASP SEQRES 12 C 218 ALA GLU LEU ALA GLY ILE GLY TRP THR THR ASP ASP LEU SEQRES 13 C 218 ASP LYS MSE ARG GLN LEU SER ALA LEU GLY ILE GLU LEU SEQRES 14 C 218 SER ILE THR GLY GLY ILE VAL PRO GLU ASP ILE TYR LEU SEQRES 15 C 218 PHE GLU GLY ILE LYS THR LYS THR PHE ILE ALA GLY ARG SEQRES 16 C 218 ALA LEU ALA GLY ALA GLU GLY GLN GLN THR ALA ALA ALA SEQRES 17 C 218 LEU ARG GLU GLN ILE ASP ARG PHE TRP PRO SEQRES 1 D 218 SER ASN ALA MSE THR LYS PRO MSE ILE GLN ILE ALA LEU SEQRES 2 D 218 ASP GLN THR ASN LEU THR ASP ALA VAL ALA VAL ALA SER SEQRES 3 D 218 ASN VAL ALA SER TYR VAL ASP VAL ILE GLU VAL GLY THR SEQRES 4 D 218 ILE LEU ALA PHE ALA GLU GLY MSE LYS ALA VAL SER THR SEQRES 5 D 218 LEU ARG HIS ASN HIS PRO ASN HIS ILE LEU VAL CYS ASP SEQRES 6 D 218 MSE LYS THR THR ASP GLY GLY ALA ILE LEU SER ARG MSE SEQRES 7 D 218 ALA PHE GLU ALA GLY ALA ASP TRP ILE THR VAL SER ALA SEQRES 8 D 218 ALA ALA HIS ILE ALA THR ILE ALA ALA CYS LYS LYS VAL SEQRES 9 D 218 ALA ASP GLU LEU ASN GLY GLU ILE GLN ILE GLU ILE TYR SEQRES 10 D 218 GLY ASN TRP THR MSE GLN ASP ALA LYS ALA TRP VAL ASP SEQRES 11 D 218 LEU GLY ILE THR GLN ALA ILE TYR HIS ARG SER ARG ASP SEQRES 12 D 218 ALA GLU LEU ALA GLY ILE GLY TRP THR THR ASP ASP LEU SEQRES 13 D 218 ASP LYS MSE ARG GLN LEU SER ALA LEU GLY ILE GLU LEU SEQRES 14 D 218 SER ILE THR GLY GLY ILE VAL PRO GLU ASP ILE TYR LEU SEQRES 15 D 218 PHE GLU GLY ILE LYS THR LYS THR PHE ILE ALA GLY ARG SEQRES 16 D 218 ALA LEU ALA GLY ALA GLU GLY GLN GLN THR ALA ALA ALA SEQRES 17 D 218 LEU ARG GLU GLN ILE ASP ARG PHE TRP PRO MODRES 3JR2 MSE A 5 MET SELENOMETHIONINE MODRES 3JR2 MSE A 44 MET SELENOMETHIONINE MODRES 3JR2 MSE A 63 MET SELENOMETHIONINE MODRES 3JR2 MSE A 75 MET SELENOMETHIONINE MODRES 3JR2 MSE A 119 MET SELENOMETHIONINE MODRES 3JR2 MSE A 156 MET SELENOMETHIONINE MODRES 3JR2 MSE B 5 MET SELENOMETHIONINE MODRES 3JR2 MSE B 44 MET SELENOMETHIONINE MODRES 3JR2 MSE B 63 MET SELENOMETHIONINE MODRES 3JR2 MSE B 75 MET SELENOMETHIONINE MODRES 3JR2 MSE B 119 MET SELENOMETHIONINE MODRES 3JR2 MSE B 156 MET SELENOMETHIONINE MODRES 3JR2 MSE C 5 MET SELENOMETHIONINE MODRES 3JR2 MSE C 44 MET SELENOMETHIONINE MODRES 3JR2 MSE C 63 MET SELENOMETHIONINE MODRES 3JR2 MSE C 75 MET SELENOMETHIONINE MODRES 3JR2 MSE C 119 MET SELENOMETHIONINE MODRES 3JR2 MSE C 156 MET SELENOMETHIONINE MODRES 3JR2 MSE D 5 MET SELENOMETHIONINE MODRES 3JR2 MSE D 44 MET SELENOMETHIONINE MODRES 3JR2 MSE D 63 MET SELENOMETHIONINE MODRES 3JR2 MSE D 75 MET SELENOMETHIONINE MODRES 3JR2 MSE D 119 MET SELENOMETHIONINE MODRES 3JR2 MSE D 156 MET SELENOMETHIONINE HET MSE A 5 8 HET MSE A 44 8 HET MSE A 63 8 HET MSE A 75 13 HET MSE A 119 8 HET MSE A 156 8 HET MSE B 5 8 HET MSE B 44 8 HET MSE B 63 8 HET MSE B 75 8 HET MSE B 119 8 HET MSE B 156 13 HET MSE C 5 8 HET MSE C 44 8 HET MSE C 63 8 HET MSE C 75 13 HET MSE C 119 8 HET MSE C 156 8 HET MSE D 5 8 HET MSE D 44 8 HET MSE D 63 8 HET MSE D 75 8 HET MSE D 119 8 HET MSE D 156 8 HET EDO A 901 4 HET GOL A1001 6 HET GOL A1002 6 HET GOL A1003 6 HET EDO A 902 4 HET SO4 A 501 5 HET SO4 A 502 5 HET MG A3001 1 HET MG A3002 1 HET SO4 B 501 5 HET SO4 B 502 5 HET MG B3001 1 HET MG B3002 1 HET EDO C 901 4 HET EDO C 902 4 HET SO4 C 501 5 HET SO4 C 502 5 HET SO4 C 503 5 HET MG C3002 1 HET MG C3001 1 HET GOL D1001 6 HET GOL D1002 6 HET EDO D 901 4 HET SO4 D 501 5 HET MG D3001 1 HETNAM MSE SELENOMETHIONINE HETNAM EDO 1,2-ETHANEDIOL HETNAM GOL GLYCEROL HETNAM SO4 SULFATE ION HETNAM MG MAGNESIUM ION HETSYN EDO ETHYLENE GLYCOL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 MSE 24(C5 H11 N O2 SE) FORMUL 5 EDO 5(C2 H6 O2) FORMUL 6 GOL 5(C3 H8 O3) FORMUL 10 SO4 8(O4 S 2-) FORMUL 12 MG 7(MG 2+) FORMUL 30 HOH *766(H2 O) HELIX 1 1 ASN A 14 ALA A 26 1 13 HELIX 2 2 SER A 27 VAL A 29 5 3 HELIX 3 3 GLY A 35 GLY A 43 1 9 HELIX 4 4 MSE A 44 HIS A 54 1 11 HELIX 5 5 GLY A 68 GLY A 80 1 13 HELIX 6 6 HIS A 91 ASN A 106 1 16 HELIX 7 7 THR A 118 LEU A 128 1 11 HELIX 8 8 SER A 138 GLY A 145 1 8 HELIX 9 9 THR A 149 LEU A 162 1 14 HELIX 10 10 VAL A 173 GLU A 181 5 9 HELIX 11 11 GLY A 191 ALA A 195 5 5 HELIX 12 12 GLU A 198 TRP A 214 1 17 HELIX 13 13 ASN B 14 ALA B 26 1 13 HELIX 14 14 GLY B 35 GLY B 43 1 9 HELIX 15 15 MSE B 44 HIS B 54 1 11 HELIX 16 16 GLY B 68 GLY B 80 1 13 HELIX 17 17 HIS B 91 LEU B 105 1 15 HELIX 18 18 THR B 118 LEU B 128 1 11 HELIX 19 19 SER B 138 GLY B 145 1 8 HELIX 20 20 THR B 149 LEU B 162 1 14 HELIX 21 21 VAL B 173 GLU B 181 5 9 HELIX 22 22 GLY B 191 ALA B 195 5 5 HELIX 23 23 GLU B 198 TRP B 214 1 17 HELIX 24 24 ASN C 14 ALA C 26 1 13 HELIX 25 25 SER C 27 VAL C 29 5 3 HELIX 26 26 GLY C 35 GLY C 43 1 9 HELIX 27 27 MSE C 44 HIS C 54 1 11 HELIX 28 28 GLY C 68 GLY C 80 1 13 HELIX 29 29 HIS C 91 LEU C 105 1 15 HELIX 30 30 THR C 118 LEU C 128 1 11 HELIX 31 31 SER C 138 GLY C 145 1 8 HELIX 32 32 THR C 149 LEU C 162 1 14 HELIX 33 33 VAL C 173 GLU C 181 5 9 HELIX 34 34 GLY C 191 ALA C 195 5 5 HELIX 35 35 GLU C 198 TRP C 214 1 17 HELIX 36 36 ASN D 14 ALA D 26 1 13 HELIX 37 37 SER D 27 VAL D 29 5 3 HELIX 38 38 GLY D 35 GLY D 43 1 9 HELIX 39 39 MSE D 44 HIS D 54 1 11 HELIX 40 40 GLY D 68 GLY D 80 1 13 HELIX 41 41 HIS D 91 LEU D 105 1 15 HELIX 42 42 THR D 118 LEU D 128 1 11 HELIX 43 43 SER D 138 GLY D 145 1 8 HELIX 44 44 THR D 149 LEU D 162 1 14 HELIX 45 45 VAL D 173 GLU D 181 5 9 HELIX 46 46 GLY D 191 ALA D 195 5 5 HELIX 47 47 GLU D 198 TRP D 214 1 17 SHEET 1 A 9 MSE A 5 LEU A 10 0 SHEET 2 A 9 VAL A 31 VAL A 34 1 O GLU A 33 N LEU A 10 SHEET 3 A 9 ILE A 58 THR A 65 1 O VAL A 60 N VAL A 34 SHEET 4 A 9 TRP A 83 SER A 87 1 O TRP A 83 N CYS A 61 SHEET 5 A 9 GLU A 108 GLU A 112 1 O GLU A 112 N VAL A 86 SHEET 6 A 9 GLN A 132 HIS A 136 1 O ILE A 134 N ILE A 111 SHEET 7 A 9 GLU A 165 THR A 169 1 O SER A 167 N ALA A 133 SHEET 8 A 9 THR A 185 ALA A 190 1 O LYS A 186 N LEU A 166 SHEET 9 A 9 MSE A 5 LEU A 10 1 N GLN A 7 O PHE A 188 SHEET 1 B 9 MSE B 5 LEU B 10 0 SHEET 2 B 9 VAL B 31 VAL B 34 1 O GLU B 33 N LEU B 10 SHEET 3 B 9 ILE B 58 THR B 65 1 O VAL B 60 N VAL B 34 SHEET 4 B 9 TRP B 83 SER B 87 1 O TRP B 83 N CYS B 61 SHEET 5 B 9 GLU B 108 GLU B 112 1 O GLU B 112 N VAL B 86 SHEET 6 B 9 GLN B 132 HIS B 136 1 O ILE B 134 N ILE B 111 SHEET 7 B 9 GLU B 165 THR B 169 1 O SER B 167 N TYR B 135 SHEET 8 B 9 THR B 185 ALA B 190 1 O ILE B 189 N ILE B 168 SHEET 9 B 9 MSE B 5 LEU B 10 1 N GLN B 7 O PHE B 188 SHEET 1 C 9 MSE C 5 LEU C 10 0 SHEET 2 C 9 VAL C 31 VAL C 34 1 O GLU C 33 N LEU C 10 SHEET 3 C 9 ILE C 58 THR C 65 1 O VAL C 60 N VAL C 34 SHEET 4 C 9 TRP C 83 SER C 87 1 O TRP C 83 N CYS C 61 SHEET 5 C 9 GLU C 108 GLU C 112 1 O GLU C 112 N VAL C 86 SHEET 6 C 9 GLN C 132 HIS C 136 1 O ILE C 134 N ILE C 111 SHEET 7 C 9 GLU C 165 THR C 169 1 O SER C 167 N TYR C 135 SHEET 8 C 9 THR C 185 ALA C 190 1 O ILE C 189 N ILE C 168 SHEET 9 C 9 MSE C 5 LEU C 10 1 N GLN C 7 O PHE C 188 SHEET 1 D 9 MSE D 5 LEU D 10 0 SHEET 2 D 9 VAL D 31 VAL D 34 1 O GLU D 33 N LEU D 10 SHEET 3 D 9 ILE D 58 THR D 65 1 O VAL D 60 N VAL D 34 SHEET 4 D 9 TRP D 83 SER D 87 1 O SER D 87 N THR D 65 SHEET 5 D 9 GLU D 108 GLU D 112 1 O GLU D 112 N VAL D 86 SHEET 6 D 9 GLN D 132 HIS D 136 1 O ILE D 134 N ILE D 111 SHEET 7 D 9 GLU D 165 THR D 169 1 O SER D 167 N TYR D 135 SHEET 8 D 9 THR D 185 ALA D 190 1 O LYS D 186 N LEU D 166 SHEET 9 D 9 MSE D 5 LEU D 10 1 N GLN D 7 O ALA D 190 LINK C PRO A 4 N MSE A 5 1555 1555 1.34 LINK C MSE A 5 N ILE A 6 1555 1555 1.32 LINK C GLY A 43 N MSE A 44 1555 1555 1.32 LINK C MSE A 44 N LYS A 45 1555 1555 1.34 LINK C ASP A 62 N MSE A 63 1555 1555 1.32 LINK C MSE A 63 N LYS A 64 1555 1555 1.34 LINK C ARG A 74 N MSE A 75 1555 1555 1.34 LINK C MSE A 75 N ALA A 76 1555 1555 1.35 LINK C THR A 118 N MSE A 119 1555 1555 1.33 LINK C MSE A 119 N GLN A 120 1555 1555 1.36 LINK C LYS A 155 N MSE A 156 1555 1555 1.33 LINK C MSE A 156 N ARG A 157 1555 1555 1.34 LINK C PRO B 4 N MSE B 5 1555 1555 1.32 LINK C MSE B 5 N ILE B 6 1555 1555 1.33 LINK C GLY B 43 N MSE B 44 1555 1555 1.32 LINK C MSE B 44 N LYS B 45 1555 1555 1.33 LINK C ASP B 62 N MSE B 63 1555 1555 1.33 LINK C MSE B 63 N LYS B 64 1555 1555 1.34 LINK C ARG B 74 N MSE B 75 1555 1555 1.34 LINK C MSE B 75 N ALA B 76 1555 1555 1.33 LINK C THR B 118 N MSE B 119 1555 1555 1.33 LINK C MSE B 119 N GLN B 120 1555 1555 1.33 LINK C LYS B 155 N MSE B 156 1555 1555 1.33 LINK C MSE B 156 N ARG B 157 1555 1555 1.32 LINK C PRO C 4 N MSE C 5 1555 1555 1.33 LINK C MSE C 5 N ILE C 6 1555 1555 1.33 LINK C GLY C 43 N MSE C 44 1555 1555 1.33 LINK C MSE C 44 N LYS C 45 1555 1555 1.32 LINK C ASP C 62 N MSE C 63 1555 1555 1.32 LINK C MSE C 63 N LYS C 64 1555 1555 1.34 LINK C ARG C 74 N MSE C 75 1555 1555 1.32 LINK C MSE C 75 N ALA C 76 1555 1555 1.33 LINK C THR C 118 N MSE C 119 1555 1555 1.33 LINK C MSE C 119 N GLN C 120 1555 1555 1.34 LINK C LYS C 155 N MSE C 156 1555 1555 1.34 LINK C MSE C 156 N ARG C 157 1555 1555 1.33 LINK C PRO D 4 N MSE D 5 1555 1555 1.31 LINK C MSE D 5 N ILE D 6 1555 1555 1.34 LINK C GLY D 43 N MSE D 44 1555 1555 1.32 LINK C MSE D 44 N LYS D 45 1555 1555 1.33 LINK C ASP D 62 N MSE D 63 1555 1555 1.33 LINK C MSE D 63 N LYS D 64 1555 1555 1.33 LINK C ARG D 74 N MSE D 75 1555 1555 1.31 LINK C MSE D 75 N ALA D 76 1555 1555 1.34 LINK C THR D 118 N MSE D 119 1555 1555 1.32 LINK C MSE D 119 N GLN D 120 1555 1555 1.33 LINK C LYS D 155 N MSE D 156 1555 1555 1.32 LINK C MSE D 156 N ARG D 157 1555 1555 1.33 LINK OE2 GLU A 33 MG MG A3001 1555 1555 1.97 LINK OD2 ASP A 62 MG MG A3001 1555 1555 1.99 LINK O HOH A 249 MG MG A3001 1555 1555 2.07 LINK O HOH A 258 MG MG A3001 1555 1555 2.27 LINK O HOH A 275 MG MG A3002 1555 1555 2.13 LINK O HOH A 284 MG MG A3001 1555 1555 1.95 LINK O HOH A 285 MG MG A3001 1555 1555 2.05 LINK O HOH A 790 MG MG A3002 1555 1555 2.20 LINK O HOH A 791 MG MG A3002 1555 1555 2.07 LINK O HOH A 792 MG MG A3002 1555 1555 2.09 LINK O HOH A 793 MG MG A3002 1555 1555 2.46 LINK O HOH A 794 MG MG A3002 1555 1555 2.29 LINK OE2 GLU B 33 MG MG B3001 1555 1555 1.98 LINK NE2 HIS B 52 MG MG B3002 1555 1555 2.23 LINK OD2 ASP B 62 MG MG B3001 1555 1555 1.93 LINK O HOH B 239 MG MG B3001 1555 1555 1.96 LINK O HOH B 249 MG MG B3001 1555 1555 2.00 LINK O HOH B 302 MG MG B3001 1555 1555 2.16 LINK O HOH B 304 MG MG B3001 1555 1555 2.24 LINK O HOH B 531 MG MG B3002 1555 1555 2.13 LINK O HOH B 774 MG MG B3002 1555 1555 2.06 LINK O HOH B 775 MG MG B3002 1555 1555 2.15 LINK MG MG B3002 O HOH C 266 1555 1555 2.00 LINK MG MG B3002 O HOH C 505 1555 1555 2.14 LINK OE2 GLU C 33 MG MG C3001 1555 1555 2.00 LINK OD2 ASP C 62 MG MG C3001 1555 1555 1.96 LINK NE2 HIS C 136 MG MG C3002 1555 1555 2.27 LINK O HOH C 230 MG MG C3001 1555 1555 2.10 LINK O HOH C 255 MG MG C3001 1555 1555 2.08 LINK O HOH C 258 MG MG C3001 1555 1555 2.02 LINK O HOH C 269 MG MG C3002 1555 1555 2.16 LINK O HOH C 271 MG MG C3001 1555 1555 2.12 LINK O HOH C 272 MG MG C3002 1555 1555 2.06 LINK O HOH C 273 MG MG C3002 1555 1555 2.12 LINK O HOH C 274 MG MG C3002 1555 1555 1.98 LINK O HOH C 276 MG MG C3002 1555 1555 1.97 LINK OE2 GLU D 33 MG MG D3001 1555 1555 1.98 LINK OD2 ASP D 62 MG MG D3001 1555 1555 1.99 LINK O HOH D 248 MG MG D3001 1555 1555 2.05 LINK O HOH D 249 MG MG D3001 1555 1555 2.24 LINK O HOH D 250 MG MG D3001 1555 1555 2.08 LINK O HOH D 251 MG MG D3001 1555 1555 2.03 CISPEP 1 TRP B 214 PRO B 215 0 -13.51 CISPEP 2 TRP C 214 PRO C 215 0 2.91 SITE 1 AC1 4 ILE A 113 TYR A 135 HIS A 136 HOH A 231 SITE 1 AC2 8 ALA A 88 ALA A 90 ILE A 95 ASP A 121 SITE 2 AC2 8 TRP A 125 HOH A 246 HOH A 469 HOH A 724 SITE 1 AC3 3 THR A 118 MSE A 119 GLN A 120 SITE 1 AC4 6 ARG A 51 PRO A 55 HIS A 57 ASP A 82 SITE 2 AC4 6 HOH A 498 HOH A 687 SITE 1 AC5 3 ASN A 56 HOH A 245 HOH A 743 SITE 1 AC6 9 ASP A 67 GLY A 68 GLY A 69 ALA A 70 SITE 2 AC6 9 THR A 94 ALA A 97 HOH A 227 HOH A 271 SITE 3 AC6 9 ARG B 139 SITE 1 AC7 10 GLY A 170 GLY A 171 ALA A 190 GLY A 191 SITE 2 AC7 10 HOH A 242 HOH A 331 HOH A 382 HOH A 459 SITE 3 AC7 10 HOH A 483 HOH A 681 SITE 1 AC8 7 GLU A 33 ASP A 62 GLU A 112 HOH A 249 SITE 2 AC8 7 HOH A 258 HOH A 284 HOH A 285 SITE 1 AC9 6 HOH A 275 HOH A 790 HOH A 791 HOH A 792 SITE 2 AC9 6 HOH A 793 HOH A 794 SITE 1 BC1 12 ARG A 139 ASP B 67 GLY B 68 GLY B 69 SITE 2 BC1 12 ALA B 70 THR B 94 ALA B 97 HOH B 242 SITE 3 BC1 12 HOH B 467 HOH B 479 HOH B 503 HOH B 553 SITE 1 BC2 9 GLY B 171 ALA B 190 GLY B 191 HOH B 220 SITE 2 BC2 9 HOH B 258 HOH B 269 HOH B 337 HOH B 355 SITE 3 BC2 9 HOH B 435 SITE 1 BC3 7 GLU B 33 ASP B 62 GLU B 112 HOH B 239 SITE 2 BC3 7 HOH B 249 HOH B 302 HOH B 304 SITE 1 BC4 6 HIS B 52 HOH B 531 HOH B 774 HOH B 775 SITE 2 BC4 6 HOH C 266 HOH C 505 SITE 1 BC5 7 ALA C 88 ALA C 90 ILE C 92 ILE C 95 SITE 2 BC5 7 ASP C 121 TRP C 125 HOH C 264 SITE 1 BC6 1 ARG C 212 SITE 1 BC7 12 ASP C 67 GLY C 68 GLY C 69 ALA C 70 SITE 2 BC7 12 ALA C 93 THR C 94 ALA C 97 HOH C 229 SITE 3 BC7 12 HOH C 438 HOH C 639 HOH C 642 ARG D 139 SITE 1 BC8 9 GLY C 170 GLY C 171 ALA C 190 GLY C 191 SITE 2 BC8 9 HOH C 217 HOH C 396 HOH C 474 HOH C 500 SITE 3 BC8 9 HOH C 694 SITE 1 BC9 2 THR C 13 ASN C 14 SITE 1 CC1 6 HIS C 136 HOH C 269 HOH C 272 HOH C 273 SITE 2 CC1 6 HOH C 274 HOH C 276 SITE 1 CC2 7 GLU C 33 ASP C 62 GLU C 112 HOH C 230 SITE 2 CC2 7 HOH C 255 HOH C 258 HOH C 271 SITE 1 CC3 6 ILE D 113 TYR D 135 HIS D 136 SER D 138 SITE 2 CC3 6 HOH D 221 HOH D 231 SITE 1 CC4 8 ARG C 139 HOH C 269 ASP D 67 GLY D 68 SITE 2 CC4 8 GLY D 69 ALA D 70 THR D 94 HOH D 708 SITE 1 CC5 3 ALA D 88 ALA D 90 TRP D 125 SITE 1 CC6 8 GLY D 170 GLY D 171 ALA D 190 GLY D 191 SITE 2 CC6 8 HOH D 236 HOH D 380 HOH D 395 HOH D 582 SITE 1 CC7 6 GLU D 33 ASP D 62 HOH D 248 HOH D 249 SITE 2 CC7 6 HOH D 250 HOH D 251 CRYST1 82.305 95.711 125.577 90.00 90.00 90.00 P 21 21 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012150 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010448 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007963 0.00000