HEADER HYDROLASE 08-SEP-09 3JR6 TITLE SEQUENTIAL REORGANIZATION OF BETA-SHEET TOPOLOGY BY INSERTION OF A TITLE 2 SINGLE STRAND COMPND MOL_ID: 1; COMPND 2 MOLECULE: LYSOZYME; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: LYSIS PROTEIN, MURAMIDASE, ENDOLYSIN; COMPND 5 EC: 3.2.1.17; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ENTEROBACTERIA PHAGE T4; SOURCE 3 ORGANISM_COMMON: BACTERIOPHAGE T4; SOURCE 4 ORGANISM_TAXID: 10665; SOURCE 5 GENE: E; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PHS 1403 KEYWDS SEQUENCE DUPLICATION, PROTEIN DESIGN, TANDEM REPEAT, BETA-SHEET, KEYWDS 2 ANTIMICROBIAL, BACTERIOLYTIC ENZYME, GLYCOSIDASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR M.SAGERMANN,W.A.BAAS,B.W.MATTHEWS REVDAT 5 03-APR-24 3JR6 1 REMARK REVDAT 4 21-FEB-24 3JR6 1 REMARK REVDAT 3 13-OCT-21 3JR6 1 REMARK SEQADV REVDAT 2 16-FEB-10 3JR6 1 REMARK REVDAT 1 20-OCT-09 3JR6 0 SPRSDE 20-OCT-09 3JR6 2B7W JRNL AUTH M.SAGERMANN,W.A.BAASE,B.W.MATTHEWS JRNL TITL SEQUENTIAL REORGANIZATION OF BETA-SHEET TOPOLOGY BY JRNL TITL 2 INSERTION OF A SINGLE STRAND. JRNL REF PROTEIN SCI. V. 15 1085 2006 JRNL REFN ISSN 0961-8368 JRNL PMID 16597830 JRNL DOI 10.1110/PS.052018006 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH M.SAGERMANN,L.GAY,B.W.MATTHEWS REMARK 1 TITL LONG-DISTANCE CONFORMATIONAL CHANGES IN A PROTEIN ENGINEERED REMARK 1 TITL 2 BY MODULATED SEQUENCE DUPLICATION. REMARK 1 REF PROC.NATL.ACAD.SCI.USA V. 100 9191 2003 REMARK 1 REFN ISSN 0027-8424 REMARK 1 PMID 12869697 REMARK 1 DOI 10.1073/PNAS.1633549100 REMARK 1 REFERENCE 2 REMARK 1 AUTH M.SAGERMANN,W.A.BAASE,B.W.MATTHEWS REMARK 1 TITL STRUCTURAL CHARACTERIZATION OF AN ENGINEERED TANDEM REPEAT REMARK 1 TITL 2 CONTRASTS THE IMPORTANCE OF CONTEXT AND SEQUENCE IN PROTEIN REMARK 1 TITL 3 FOLDING. REMARK 1 REF PROC.NATL.ACAD.SCI.USA V. 96 6078 1999 REMARK 1 REFN ISSN 0027-8424 REMARK 1 PMID 10339544 REMARK 2 REMARK 2 RESOLUTION. 3.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CCP4 (REFMAC) REMARK 3 AUTHORS : NULL REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32.44 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 96.5 REMARK 3 NUMBER OF REFLECTIONS : 14090 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.250 REMARK 3 FREE R VALUE : 0.320 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 1279 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5212 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 40 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 3.34800 REMARK 3 B22 (A**2) : -1.90100 REMARK 3 B33 (A**2) : -1.44700 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -1.31400 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : NULL REMARK 3 BOND ANGLES (DEGREES) : 2.285 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: AUTHORS STATE THAT SCALING AND B-VALUE REMARK 3 REFINEMENT WERE PERFORMED WITH CNS USING A RECOMMENDED REMARK 3 RESOLUTION RANGE OF 6.0-3.0 A RESOLUTION. AS THE B-VALUES FOR REMARK 3 THE DATA SET WERE DETERMINED TO BE LOW (EVEN FOR HIGHER LOW- REMARK 3 RESOLUTION CUT-OFFS), THE B-VALUES FOR THE ATOMS REMAINED REMARK 3 SIMILARLY LOW AS WELL. MOLECULES A AND B EXHIBIT WELL-DEFINED REMARK 3 DENSITY OF THE LOOPS. THE CORRESPONDING LOOPS OF MOLECULES B AND REMARK 3 C WERE IN POOR DENSITY BUT COULD CLEARLY BE IDENTIFIED. LOOPS REMARK 3 AND TERMINAL RESIDUES THAT COULD NOT BE REFINED RELIABLY WERE REMARK 3 OMITTED: B(L170), D(L170), B(34-46), C(36-46). REMARK 4 REMARK 4 3JR6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-SEP-09. REMARK 100 THE DEPOSITION ID IS D_1000055055. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-SEP-98 REMARK 200 TEMPERATURE (KELVIN) : 110 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU200 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : YALE MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS II REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS, XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17925 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.000 REMARK 200 RESOLUTION RANGE LOW (A) : 32.440 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.5 REMARK 200 DATA REDUNDANCY : 4.300 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.07000 REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.09700 REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: T4 LYSOZYME I3P MUTANT REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.29 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.38 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 3400, 50 MM AMMONIUM SULFATE, REMARK 280 TRIS, PH 7.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 37.95750 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY B 34 REMARK 465 ILE B 35 REMARK 465 GLY B 36 REMARK 465 HIS B 37 REMARK 465 LEU B 38 REMARK 465 LEU B 39 REMARK 465 THR B 40 REMARK 465 LYS B 41 REMARK 465 SER B 42 REMARK 465 PRO B 43 REMARK 465 SER B 44 REMARK 465 LEU B 45 REMARK 465 ASN B 46 REMARK 465 LEU B 170 REMARK 465 GLY C 36 REMARK 465 HIS C 37 REMARK 465 LEU C 38 REMARK 465 LEU C 39 REMARK 465 THR C 40 REMARK 465 LYS C 41 REMARK 465 SER C 42 REMARK 465 PRO C 43 REMARK 465 SER C 44 REMARK 465 LEU C 45 REMARK 465 ASN C 46 REMARK 465 LEU D 170 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 C SER A 42 CD PRO A 43 1.44 REMARK 500 O SER A 42 CD PRO A 43 1.64 REMARK 500 O SER A 42 CG PRO A 43 1.70 REMARK 500 O GLU C 51 N ALA C 55 2.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 SER A 42 CB SER A 42 OG 0.229 REMARK 500 PRO A 43 CB PRO A 43 CG 0.409 REMARK 500 PRO A 43 CD PRO A 43 N 0.215 REMARK 500 SER A 44 CA SER A 44 CB 0.168 REMARK 500 SER A 44 CB SER A 44 OG 1.017 REMARK 500 LEU A 45 CB LEU A 45 CG 0.583 REMARK 500 LEU A 45 C ASN A 46 N 0.236 REMARK 500 LEU D 45 CB LEU D 45 CG -0.181 REMARK 500 ASN D 46 CB ASN D 46 CG 0.298 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 SER A 42 CA - CB - OG ANGL. DEV. = -20.9 DEGREES REMARK 500 PRO A 43 C - N - CD ANGL. DEV. = -72.9 DEGREES REMARK 500 PRO A 43 CA - N - CD ANGL. DEV. = -23.1 DEGREES REMARK 500 PRO A 43 CB - CA - C ANGL. DEV. = -18.2 DEGREES REMARK 500 PRO A 43 N - CA - CB ANGL. DEV. = 32.2 DEGREES REMARK 500 PRO A 43 CA - CB - CG ANGL. DEV. = -15.2 DEGREES REMARK 500 SER A 44 N - CA - CB ANGL. DEV. = 13.6 DEGREES REMARK 500 SER A 44 CA - CB - OG ANGL. DEV. = -44.0 DEGREES REMARK 500 LEU A 45 CA - CB - CG ANGL. DEV. = -15.0 DEGREES REMARK 500 LEU A 45 CB - CG - CD1 ANGL. DEV. = -22.1 DEGREES REMARK 500 LEU A 45 CB - CG - CD2 ANGL. DEV. = 23.7 DEGREES REMARK 500 LEU A 45 CA - C - N ANGL. DEV. = -15.2 DEGREES REMARK 500 LEU A 45 O - C - N ANGL. DEV. = 12.3 DEGREES REMARK 500 PRO B 149 C - N - CA ANGL. DEV. = 14.7 DEGREES REMARK 500 PRO C 149 C - N - CA ANGL. DEV. = 10.7 DEGREES REMARK 500 SER D 42 CB - CA - C ANGL. DEV. = 15.2 DEGREES REMARK 500 LEU D 45 CA - CB - CG ANGL. DEV. = 18.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 11 -63.40 -140.45 REMARK 500 ASP A 20 160.54 -43.08 REMARK 500 TYR A 24 140.15 175.30 REMARK 500 PRO A 43 17.08 82.81 REMARK 500 SER A 44 176.31 149.73 REMARK 500 ASN A 59 48.76 -95.97 REMARK 500 ILE A 64 -162.97 -119.84 REMARK 500 LYS A 71 21.03 -69.68 REMARK 500 ALA A 99 -60.94 -28.22 REMARK 500 TRP A 132 -75.91 -41.81 REMARK 500 ALA A 136 -73.41 -44.04 REMARK 500 LYS A 168 -39.00 -31.34 REMARK 500 GLU B 11 -61.14 -93.64 REMARK 500 ILE B 17 172.57 -42.42 REMARK 500 TYR B 18 162.29 169.72 REMARK 500 HIS B 31 89.00 -60.05 REMARK 500 ASN B 59 45.12 -87.49 REMARK 500 ARG B 82 -86.24 -48.11 REMARK 500 ASN B 87 101.25 -49.11 REMARK 500 THR B 121 -76.77 -52.04 REMARK 500 ALA B 140 32.11 -74.65 REMARK 500 TRP B 164 25.78 -69.28 REMARK 500 LYS B 168 -71.31 -25.55 REMARK 500 ASN C 2 157.17 168.84 REMARK 500 SER C 50 -85.48 -57.79 REMARK 500 ALA C 55 -75.96 -66.09 REMARK 500 ARG C 58 151.09 172.03 REMARK 500 ASP C 76 -45.96 -29.78 REMARK 500 GLN C 129 24.36 -77.63 REMARK 500 ARG C 131 59.98 -90.45 REMARK 500 TRP C 132 -74.74 -45.49 REMARK 500 ASN C 146 -43.57 -24.22 REMARK 500 LYS C 168 -88.96 -10.69 REMARK 500 ASN C 169 59.51 -106.60 REMARK 500 ILE D 35 93.62 -65.57 REMARK 500 THR D 40 54.52 -119.75 REMARK 500 ALA D 55 -71.38 -51.73 REMARK 500 ARG D 58 169.72 178.33 REMARK 500 ASN D 61 22.32 44.43 REMARK 500 LYS D 71 24.88 -68.11 REMARK 500 LEU D 72 -38.81 -135.53 REMARK 500 LYS D 89 -60.66 -91.42 REMARK 500 LYS D 130 31.56 79.62 REMARK 500 TRP D 132 -85.74 -51.85 REMARK 500 LYS D 141 38.09 -99.63 REMARK 500 THR D 148 72.94 -117.54 REMARK 500 LYS D 168 -72.70 -30.93 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 TYR D 24 0.09 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 ASN B 61 14.69 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 D 801 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 C 802 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 C 803 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 D 804 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 805 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 806 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 807 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 808 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2B7X RELATED DB: PDB REMARK 900 SEQUENCE DUPLICATION OF A BETA-STRAND REMARK 900 RELATED ID: 261L RELATED DB: PDB REMARK 900 SEQUENCE DUPLICATION OF HELIX B OF T4 LYSOZYME REMARK 900 RELATED ID: 1P56 RELATED DB: PDB REMARK 900 RELOCATION AND DUPLICATION OF THE C-TERMINAL HELIX OF T4 LYSOZYME DBREF 3JR6 A 1 170 UNP P00720 LYS_BPT4 1 164 DBREF 3JR6 B 1 170 UNP P00720 LYS_BPT4 1 164 DBREF 3JR6 C 1 170 UNP P00720 LYS_BPT4 1 164 DBREF 3JR6 D 1 170 UNP P00720 LYS_BPT4 1 164 SEQADV 3JR6 GLY A 28 UNP P00720 INSERTION SEQADV 3JR6 ILE A 29 UNP P00720 INSERTION SEQADV 3JR6 GLY A 30 UNP P00720 INSERTION SEQADV 3JR6 HIS A 31 UNP P00720 INSERTION SEQADV 3JR6 LEU A 32 UNP P00720 INSERTION SEQADV 3JR6 LEU A 33 UNP P00720 INSERTION SEQADV 3JR6 THR A 60 UNP P00720 CYS 54 ENGINEERED MUTATION SEQADV 3JR6 ALA A 103 UNP P00720 CYS 97 ENGINEERED MUTATION SEQADV 3JR6 GLY B 28 UNP P00720 INSERTION SEQADV 3JR6 ILE B 29 UNP P00720 INSERTION SEQADV 3JR6 GLY B 30 UNP P00720 INSERTION SEQADV 3JR6 HIS B 31 UNP P00720 INSERTION SEQADV 3JR6 LEU B 32 UNP P00720 INSERTION SEQADV 3JR6 LEU B 33 UNP P00720 INSERTION SEQADV 3JR6 THR B 60 UNP P00720 CYS 54 ENGINEERED MUTATION SEQADV 3JR6 ALA B 103 UNP P00720 CYS 97 ENGINEERED MUTATION SEQADV 3JR6 GLY C 28 UNP P00720 INSERTION SEQADV 3JR6 ILE C 29 UNP P00720 INSERTION SEQADV 3JR6 GLY C 30 UNP P00720 INSERTION SEQADV 3JR6 HIS C 31 UNP P00720 INSERTION SEQADV 3JR6 LEU C 32 UNP P00720 INSERTION SEQADV 3JR6 LEU C 33 UNP P00720 INSERTION SEQADV 3JR6 THR C 60 UNP P00720 CYS 54 ENGINEERED MUTATION SEQADV 3JR6 ALA C 103 UNP P00720 CYS 97 ENGINEERED MUTATION SEQADV 3JR6 GLY D 28 UNP P00720 INSERTION SEQADV 3JR6 ILE D 29 UNP P00720 INSERTION SEQADV 3JR6 GLY D 30 UNP P00720 INSERTION SEQADV 3JR6 HIS D 31 UNP P00720 INSERTION SEQADV 3JR6 LEU D 32 UNP P00720 INSERTION SEQADV 3JR6 LEU D 33 UNP P00720 INSERTION SEQADV 3JR6 THR D 60 UNP P00720 CYS 54 ENGINEERED MUTATION SEQADV 3JR6 ALA D 103 UNP P00720 CYS 97 ENGINEERED MUTATION SEQRES 1 A 170 MET ASN ILE PHE GLU MET LEU ARG ILE ASP GLU GLY LEU SEQRES 2 A 170 ARG LEU LYS ILE TYR LYS ASP THR GLU GLY TYR TYR THR SEQRES 3 A 170 ILE GLY ILE GLY HIS LEU LEU GLY ILE GLY HIS LEU LEU SEQRES 4 A 170 THR LYS SER PRO SER LEU ASN ALA ALA LYS SER GLU LEU SEQRES 5 A 170 ASP LYS ALA ILE GLY ARG ASN THR ASN GLY VAL ILE THR SEQRES 6 A 170 LYS ASP GLU ALA GLU LYS LEU PHE ASN GLN ASP VAL ASP SEQRES 7 A 170 ALA ALA VAL ARG GLY ILE LEU ARG ASN ALA LYS LEU LYS SEQRES 8 A 170 PRO VAL TYR ASP SER LEU ASP ALA VAL ARG ARG ALA ALA SEQRES 9 A 170 LEU ILE ASN MET VAL PHE GLN MET GLY GLU THR GLY VAL SEQRES 10 A 170 ALA GLY PHE THR ASN SER LEU ARG MET LEU GLN GLN LYS SEQRES 11 A 170 ARG TRP ASP GLU ALA ALA VAL ASN LEU ALA LYS SER ARG SEQRES 12 A 170 TRP TYR ASN GLN THR PRO ASN ARG ALA LYS ARG VAL ILE SEQRES 13 A 170 THR THR PHE ARG THR GLY THR TRP ASP ALA TYR LYS ASN SEQRES 14 A 170 LEU SEQRES 1 B 170 MET ASN ILE PHE GLU MET LEU ARG ILE ASP GLU GLY LEU SEQRES 2 B 170 ARG LEU LYS ILE TYR LYS ASP THR GLU GLY TYR TYR THR SEQRES 3 B 170 ILE GLY ILE GLY HIS LEU LEU GLY ILE GLY HIS LEU LEU SEQRES 4 B 170 THR LYS SER PRO SER LEU ASN ALA ALA LYS SER GLU LEU SEQRES 5 B 170 ASP LYS ALA ILE GLY ARG ASN THR ASN GLY VAL ILE THR SEQRES 6 B 170 LYS ASP GLU ALA GLU LYS LEU PHE ASN GLN ASP VAL ASP SEQRES 7 B 170 ALA ALA VAL ARG GLY ILE LEU ARG ASN ALA LYS LEU LYS SEQRES 8 B 170 PRO VAL TYR ASP SER LEU ASP ALA VAL ARG ARG ALA ALA SEQRES 9 B 170 LEU ILE ASN MET VAL PHE GLN MET GLY GLU THR GLY VAL SEQRES 10 B 170 ALA GLY PHE THR ASN SER LEU ARG MET LEU GLN GLN LYS SEQRES 11 B 170 ARG TRP ASP GLU ALA ALA VAL ASN LEU ALA LYS SER ARG SEQRES 12 B 170 TRP TYR ASN GLN THR PRO ASN ARG ALA LYS ARG VAL ILE SEQRES 13 B 170 THR THR PHE ARG THR GLY THR TRP ASP ALA TYR LYS ASN SEQRES 14 B 170 LEU SEQRES 1 C 170 MET ASN ILE PHE GLU MET LEU ARG ILE ASP GLU GLY LEU SEQRES 2 C 170 ARG LEU LYS ILE TYR LYS ASP THR GLU GLY TYR TYR THR SEQRES 3 C 170 ILE GLY ILE GLY HIS LEU LEU GLY ILE GLY HIS LEU LEU SEQRES 4 C 170 THR LYS SER PRO SER LEU ASN ALA ALA LYS SER GLU LEU SEQRES 5 C 170 ASP LYS ALA ILE GLY ARG ASN THR ASN GLY VAL ILE THR SEQRES 6 C 170 LYS ASP GLU ALA GLU LYS LEU PHE ASN GLN ASP VAL ASP SEQRES 7 C 170 ALA ALA VAL ARG GLY ILE LEU ARG ASN ALA LYS LEU LYS SEQRES 8 C 170 PRO VAL TYR ASP SER LEU ASP ALA VAL ARG ARG ALA ALA SEQRES 9 C 170 LEU ILE ASN MET VAL PHE GLN MET GLY GLU THR GLY VAL SEQRES 10 C 170 ALA GLY PHE THR ASN SER LEU ARG MET LEU GLN GLN LYS SEQRES 11 C 170 ARG TRP ASP GLU ALA ALA VAL ASN LEU ALA LYS SER ARG SEQRES 12 C 170 TRP TYR ASN GLN THR PRO ASN ARG ALA LYS ARG VAL ILE SEQRES 13 C 170 THR THR PHE ARG THR GLY THR TRP ASP ALA TYR LYS ASN SEQRES 14 C 170 LEU SEQRES 1 D 170 MET ASN ILE PHE GLU MET LEU ARG ILE ASP GLU GLY LEU SEQRES 2 D 170 ARG LEU LYS ILE TYR LYS ASP THR GLU GLY TYR TYR THR SEQRES 3 D 170 ILE GLY ILE GLY HIS LEU LEU GLY ILE GLY HIS LEU LEU SEQRES 4 D 170 THR LYS SER PRO SER LEU ASN ALA ALA LYS SER GLU LEU SEQRES 5 D 170 ASP LYS ALA ILE GLY ARG ASN THR ASN GLY VAL ILE THR SEQRES 6 D 170 LYS ASP GLU ALA GLU LYS LEU PHE ASN GLN ASP VAL ASP SEQRES 7 D 170 ALA ALA VAL ARG GLY ILE LEU ARG ASN ALA LYS LEU LYS SEQRES 8 D 170 PRO VAL TYR ASP SER LEU ASP ALA VAL ARG ARG ALA ALA SEQRES 9 D 170 LEU ILE ASN MET VAL PHE GLN MET GLY GLU THR GLY VAL SEQRES 10 D 170 ALA GLY PHE THR ASN SER LEU ARG MET LEU GLN GLN LYS SEQRES 11 D 170 ARG TRP ASP GLU ALA ALA VAL ASN LEU ALA LYS SER ARG SEQRES 12 D 170 TRP TYR ASN GLN THR PRO ASN ARG ALA LYS ARG VAL ILE SEQRES 13 D 170 THR THR PHE ARG THR GLY THR TRP ASP ALA TYR LYS ASN SEQRES 14 D 170 LEU HET SO4 A 805 5 HET SO4 A 806 5 HET SO4 B 807 5 HET SO4 B 808 5 HET SO4 C 802 5 HET SO4 C 803 5 HET SO4 D 801 5 HET SO4 D 804 5 HETNAM SO4 SULFATE ION FORMUL 5 SO4 8(O4 S 2-) HELIX 1 1 ASN A 2 GLU A 11 1 10 HELIX 2 2 LEU A 45 GLY A 57 1 13 HELIX 3 3 THR A 65 LEU A 85 1 21 HELIX 4 4 LYS A 89 LEU A 97 1 9 HELIX 5 5 ASP A 98 PHE A 120 1 23 HELIX 6 6 PHE A 120 LYS A 130 1 11 HELIX 7 7 ARG A 131 ALA A 140 1 10 HELIX 8 8 SER A 142 THR A 148 1 7 HELIX 9 9 THR A 148 GLY A 162 1 15 HELIX 10 10 TRP A 164 LYS A 168 5 5 HELIX 11 11 ASN B 2 GLU B 11 1 10 HELIX 12 12 ALA B 47 GLY B 57 1 11 HELIX 13 13 THR B 65 LEU B 85 1 21 HELIX 14 14 LEU B 90 LEU B 97 1 8 HELIX 15 15 ASP B 98 GLY B 119 1 22 HELIX 16 16 PHE B 120 LYS B 130 1 11 HELIX 17 17 ARG B 131 ALA B 140 1 10 HELIX 18 18 SER B 142 THR B 148 1 7 HELIX 19 19 THR B 148 GLY B 162 1 15 HELIX 20 20 THR B 163 LYS B 168 5 6 HELIX 21 21 ASN C 2 GLU C 11 1 10 HELIX 22 22 ALA C 48 GLY C 57 1 10 HELIX 23 23 THR C 65 LEU C 85 1 21 HELIX 24 24 LEU C 90 LEU C 97 1 8 HELIX 25 25 ASP C 98 GLY C 113 1 16 HELIX 26 26 GLY C 113 GLY C 119 1 7 HELIX 27 27 PHE C 120 GLN C 129 1 10 HELIX 28 28 ARG C 131 LYS C 141 1 11 HELIX 29 29 SER C 142 THR C 148 1 7 HELIX 30 30 THR C 148 GLY C 162 1 15 HELIX 31 31 ASN D 2 GLU D 11 1 10 HELIX 32 32 SER D 44 GLY D 57 1 14 HELIX 33 33 THR D 65 LEU D 85 1 21 HELIX 34 34 LYS D 89 LEU D 97 1 9 HELIX 35 35 ASP D 98 GLY D 113 1 16 HELIX 36 36 GLY D 113 PHE D 120 1 8 HELIX 37 37 PHE D 120 LYS D 130 1 11 HELIX 38 38 ARG D 131 ALA D 140 1 10 HELIX 39 39 SER D 142 THR D 148 1 7 HELIX 40 40 THR D 148 GLY D 162 1 15 HELIX 41 41 THR D 163 LYS D 168 5 6 SHEET 1 A 2 ARG A 14 ASP A 20 0 SHEET 2 A 2 TYR A 24 GLY A 28 -1 O TYR A 24 N ASP A 20 SHEET 1 B 2 TYR B 18 LYS B 19 0 SHEET 2 B 2 TYR B 25 THR B 26 -1 O THR B 26 N TYR B 18 SHEET 1 C 2 TYR C 18 LYS C 19 0 SHEET 2 C 2 TYR C 25 THR C 26 -1 O THR C 26 N TYR C 18 SHEET 1 D 3 ARG D 14 LYS D 19 0 SHEET 2 D 3 TYR D 25 GLY D 28 -1 O GLY D 28 N ARG D 14 SHEET 3 D 3 HIS D 31 LEU D 33 -1 O LEU D 33 N TYR D 25 SHEET 1 E 2 ILE D 35 GLY D 36 0 SHEET 2 E 2 LEU D 39 THR D 40 -1 O LEU D 39 N GLY D 36 SITE 1 AC1 4 THR D 148 PRO D 149 ASN D 150 ARG D 151 SITE 1 AC2 6 ARG A 14 TYR A 18 THR C 148 PRO C 149 SITE 2 AC2 6 ASN C 150 ARG C 151 SITE 1 AC3 5 PHE C 120 THR C 121 ASN C 122 SER C 123 SITE 2 AC3 5 ASN C 138 SITE 1 AC4 5 PHE D 120 THR D 121 ASN D 122 SER D 123 SITE 2 AC4 5 ASN D 138 SITE 1 AC5 6 GLY A 119 PHE A 120 THR A 121 ASN A 122 SITE 2 AC5 6 SER A 123 ASN A 138 SITE 1 AC6 4 THR A 148 PRO A 149 ASN A 150 ARG A 151 SITE 1 AC7 5 PHE B 120 THR B 121 ASN B 122 SER B 123 SITE 2 AC7 5 ASN B 138 SITE 1 AC8 5 THR B 148 PRO B 149 ASN B 150 ARG B 151 SITE 2 AC8 5 ARG D 14 CRYST1 59.227 75.915 81.547 90.00 94.06 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016884 0.000000 0.001198 0.00000 SCALE2 0.000000 0.013173 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012294 0.00000