data_3JR9 # _entry.id 3JR9 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.378 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3JR9 pdb_00003jr9 10.2210/pdb3jr9/pdb NDB NA0157 ? ? RCSB RCSB055058 ? ? WWPDB D_1000055058 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 3IV5 . unspecified PDB 3JRA . unspecified PDB 3JRB . unspecified PDB 3JRC . unspecified PDB 3JRD . unspecified PDB 3JRE . unspecified PDB 3JRF . unspecified PDB 3JRG . unspecified PDB 3JRH . unspecified PDB 3JRI . unspecified # _pdbx_database_status.entry_id 3JR9 _pdbx_database_status.status_code REL _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2009-09-08 _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Stella, S.' 1 'Cascio, D.' 2 'Johnson, R.C.' 3 # _citation.id primary _citation.title 'The shape of the DNA minor groove directs binding by the DNA-bending protein Fis.' _citation.journal_abbrev 'Genes Dev.' _citation.journal_volume 24 _citation.page_first 814 _citation.page_last 826 _citation.year 2010 _citation.journal_id_ASTM GEDEEP _citation.country US _citation.journal_id_ISSN 0890-9369 _citation.journal_id_CSD 2056 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 20395367 _citation.pdbx_database_id_DOI 10.1101/gad.1900610 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Stella, S.' 1 ? primary 'Cascio, D.' 2 ? primary 'Johnson, R.C.' 3 ? # _cell.length_a 42.960 _cell.length_b 91.690 _cell.length_c 154.170 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 90.000 _cell.entry_id 3JR9 _cell.pdbx_unique_axis ? _cell.Z_PDB 8 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.entry_id 3JR9 _symmetry.Int_Tables_number 19 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'DNA-binding protein fis' 11252.918 2 ? ? ? ? 2 polymer syn 'DNA (27-MER)' 8318.416 1 ? ? ? ? 3 polymer syn 'DNA (27-MER)' 8265.410 1 ? ? ? ? 4 water nat water 18.015 22 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;MFEQRVNSDVLTVSTVNSQDQVTQKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTRGNQTRAALM MGINRGTLRKKLKKYGMN ; ;MFEQRVNSDVLTVSTVNSQDQVTQKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTRGNQTRAALM MGINRGTLRKKLKKYGMN ; A,B ? 2 polydeoxyribonucleotide no no ;(DA)(DA)(DA)(DT)(DT)(DT)(DG)(DT)(DT)(DT)(DA)(DA)(DA)(DT)(DT)(DT)(DT)(DG)(DA)(DG) (DC)(DA)(DA)(DA)(DT)(DT)(DT) ; AAATTTGTTTAAATTTTGAGCAAATTT C ? 3 polydeoxyribonucleotide no no ;(DA)(DA)(DA)(DT)(DT)(DT)(DG)(DC)(DT)(DC)(DA)(DA)(DA)(DA)(DT)(DT)(DT)(DA)(DA)(DA) (DC)(DA)(DA)(DA)(DT)(DT)(DT) ; AAATTTGCTCAAAATTTAAACAAATTT D ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 PHE n 1 3 GLU n 1 4 GLN n 1 5 ARG n 1 6 VAL n 1 7 ASN n 1 8 SER n 1 9 ASP n 1 10 VAL n 1 11 LEU n 1 12 THR n 1 13 VAL n 1 14 SER n 1 15 THR n 1 16 VAL n 1 17 ASN n 1 18 SER n 1 19 GLN n 1 20 ASP n 1 21 GLN n 1 22 VAL n 1 23 THR n 1 24 GLN n 1 25 LYS n 1 26 PRO n 1 27 LEU n 1 28 ARG n 1 29 ASP n 1 30 SER n 1 31 VAL n 1 32 LYS n 1 33 GLN n 1 34 ALA n 1 35 LEU n 1 36 LYS n 1 37 ASN n 1 38 TYR n 1 39 PHE n 1 40 ALA n 1 41 GLN n 1 42 LEU n 1 43 ASN n 1 44 GLY n 1 45 GLN n 1 46 ASP n 1 47 VAL n 1 48 ASN n 1 49 ASP n 1 50 LEU n 1 51 TYR n 1 52 GLU n 1 53 LEU n 1 54 VAL n 1 55 LEU n 1 56 ALA n 1 57 GLU n 1 58 VAL n 1 59 GLU n 1 60 GLN n 1 61 PRO n 1 62 LEU n 1 63 LEU n 1 64 ASP n 1 65 MET n 1 66 VAL n 1 67 MET n 1 68 GLN n 1 69 TYR n 1 70 THR n 1 71 ARG n 1 72 GLY n 1 73 ASN n 1 74 GLN n 1 75 THR n 1 76 ARG n 1 77 ALA n 1 78 ALA n 1 79 LEU n 1 80 MET n 1 81 MET n 1 82 GLY n 1 83 ILE n 1 84 ASN n 1 85 ARG n 1 86 GLY n 1 87 THR n 1 88 LEU n 1 89 ARG n 1 90 LYS n 1 91 LYS n 1 92 LEU n 1 93 LYS n 1 94 LYS n 1 95 TYR n 1 96 GLY n 1 97 MET n 1 98 ASN n 2 1 DA n 2 2 DA n 2 3 DA n 2 4 DT n 2 5 DT n 2 6 DT n 2 7 DG n 2 8 DT n 2 9 DT n 2 10 DT n 2 11 DA n 2 12 DA n 2 13 DA n 2 14 DT n 2 15 DT n 2 16 DT n 2 17 DT n 2 18 DG n 2 19 DA n 2 20 DG n 2 21 DC n 2 22 DA n 2 23 DA n 2 24 DA n 2 25 DT n 2 26 DT n 2 27 DT n 3 1 DA n 3 2 DA n 3 3 DA n 3 4 DT n 3 5 DT n 3 6 DT n 3 7 DG n 3 8 DC n 3 9 DT n 3 10 DC n 3 11 DA n 3 12 DA n 3 13 DA n 3 14 DA n 3 15 DT n 3 16 DT n 3 17 DT n 3 18 DA n 3 19 DA n 3 20 DA n 3 21 DC n 3 22 DA n 3 23 DA n 3 24 DA n 3 25 DT n 3 26 DT n 3 27 DT n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'fis, b3261, JW3229' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain K-12 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 83333 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET11a _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP FIS_ECOLI P0A6R3 1 ;MFEQRVNSDVLTVSTVNSQDQVTQKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTRGNQTRAALM MGINRGTLRKKLKKYGMN ; 1 ? 2 PDB 3JR9 3JR9 2 AAATTTGTTTAAATTTTGAGCAAATTT ? ? 3 PDB 3JR9 3JR9 3 AAATTTGCTCAAAATTTAAACAAATTT ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3JR9 A 1 ? 98 ? P0A6R3 1 ? 98 ? 1 98 2 1 3JR9 B 1 ? 98 ? P0A6R3 1 ? 98 ? 1 98 3 2 3JR9 C 1 ? 27 ? 3JR9 1 ? 27 ? 1 27 4 3 3JR9 D 1 ? 27 ? 3JR9 1 ? 27 ? 1 27 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.entry_id 3JR9 _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 3.88 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 68.33 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.pH 8.5 _exptl_crystal_grow.temp 277 _exptl_crystal_grow.pdbx_details '0.2 M Sodium citrate, 0.1 M TRIS-HCl pH 8.5, 36% PEG 400, vapor diffusion, hanging drop, temperature 277K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.pdbx_collection_date 2008-02-25 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator 'Si (111)' _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.000 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 24-ID-C' _diffrn_source.pdbx_wavelength_list 1.000 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 24-ID-C # _reflns.entry_id 3JR9 _reflns.d_resolution_high 2.900 _reflns.d_resolution_low 90.000 _reflns.number_obs 14353 _reflns.pdbx_Rmerge_I_obs 0.165 _reflns.pdbx_netI_over_sigmaI 6.100 _reflns.pdbx_chi_squared 1.475 _reflns.pdbx_redundancy 3.200 _reflns.percent_possible_obs 99.000 _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.number_all ? _reflns.pdbx_Rsym_value ? _reflns.B_iso_Wilson_estimate ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 2.90 3.00 ? ? ? 0.668 ? ? 0.599 3.20 ? 1393 99.40 1 1 3.00 3.12 ? ? ? 0.473 ? ? 0.656 3.30 ? 1396 99.10 2 1 3.12 3.27 ? ? ? 0.297 ? ? 0.929 3.30 ? 1411 99.40 3 1 3.27 3.44 ? ? ? 0.229 ? ? 1.154 3.30 ? 1406 99.20 4 1 3.44 3.65 ? ? ? 0.193 ? ? 1.260 3.30 ? 1430 99.00 5 1 3.65 3.94 ? ? ? 0.175 ? ? 1.541 3.30 ? 1416 98.80 6 1 3.94 4.33 ? ? ? 0.156 ? ? 1.808 3.30 ? 1425 98.90 7 1 4.33 4.96 ? ? ? 0.141 ? ? 1.888 3.20 ? 1430 99.10 8 1 4.96 6.25 ? ? ? 0.140 ? ? 1.986 3.10 ? 1481 99.00 9 1 6.25 90.00 ? ? ? 0.133 ? ? 2.939 3.00 ? 1565 98.60 10 1 # _refine.entry_id 3JR9 _refine.ls_d_res_high 2.900 _refine.ls_d_res_low 39.410 _refine.pdbx_ls_sigma_F 0.00 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 89.350 _refine.ls_number_reflns_obs 12621 _refine.ls_number_reflns_all ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.224 _refine.ls_R_factor_R_work 0.222 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.263 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 5.000 _refine.ls_number_reflns_R_free 629 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 40.851 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.correlation_coeff_Fo_to_Fc 0.931 _refine.correlation_coeff_Fo_to_Fc_free 0.905 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R 0.929 _refine.pdbx_overall_ESU_R_Free 0.378 _refine.overall_SU_ML 0.271 _refine.overall_SU_B ? _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.400 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model 1ETO _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set ? _refine.B_iso_max 76.12 _refine.B_iso_min 5.87 _refine.occupancy_max 1.00 _refine.occupancy_min 0.50 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1502 _refine_hist.pdbx_number_atoms_nucleic_acid 1101 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 22 _refine_hist.number_atoms_total 2625 _refine_hist.d_res_high 2.900 _refine_hist.d_res_low 39.410 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 2771 0.009 0.021 ? 'X-RAY DIFFRACTION' ? r_bond_other_d 1531 0.003 0.020 ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 3974 1.503 2.464 ? 'X-RAY DIFFRACTION' ? r_angle_other_deg 3809 1.044 3.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 193 4.666 5.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 78 38.526 25.769 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 304 16.598 15.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 11 14.990 15.000 ? 'X-RAY DIFFRACTION' ? ;CHIRAL-CENTER RESTRAINTS (A''3) ; 453 0.060 0.200 ? 'X-RAY DIFFRACTION' ? r_gen_planes_refined 2249 0.004 0.020 ? 'X-RAY DIFFRACTION' ? r_gen_planes_other 278 0.001 0.020 ? 'X-RAY DIFFRACTION' ? r_nbd_refined 580 0.192 0.200 ? 'X-RAY DIFFRACTION' ? r_nbd_other 1682 0.206 0.200 ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 1224 0.201 0.200 ? 'X-RAY DIFFRACTION' ? r_nbtor_other 1135 0.085 0.200 ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 59 0.139 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 23 0.218 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other 48 0.211 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 9 0.147 0.200 ? 'X-RAY DIFFRACTION' ? ;MAIN-CHAIN BOND REFINED ATOMS (A''2) ; 1244 2.659 2.000 ? 'X-RAY DIFFRACTION' ? ;MAIN-CHAIN BOND OTHER ATOMS (A''2) ; 386 0.381 2.000 ? 'X-RAY DIFFRACTION' ? ;MAIN-CHAIN ANGLE REFINED ATOMS (A''2) ; 1533 3.152 3.000 ? 'X-RAY DIFFRACTION' ? ;SIDE-CHAIN BOND REFINED ATOMS (A''2) ; 2363 1.428 2.000 ? 'X-RAY DIFFRACTION' ? ;SIDE-CHAIN ANGLE REFINED ATOMS (A''2) ; 2439 2.222 3.000 ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.d_res_high 2.903 _refine_ls_shell.d_res_low 2.978 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 33.330 _refine_ls_shell.number_reflns_R_work 318 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.374 _refine_ls_shell.R_factor_R_free 0.497 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 21 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 339 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3JR9 _struct.title 'Crystal structure of Fis bound to 27 bp optimal binding sequence F2' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3JR9 _struct_keywords.text ;HTH domain, Protein-DNA complex, minor groove compression, DNA bending, indirect recognition, activator, DNA-binding, Transcription, Transcription regulation, DNA BINDING PROTEIN-DNA COMPLEX ; _struct_keywords.pdbx_keywords 'DNA BINDING PROTEIN/DNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 4 ? F N N 4 ? G N N 4 ? H N N 4 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 LEU A 27 ? LEU A 42 ? LEU A 27 LEU A 42 1 ? 16 HELX_P HELX_P2 2 ASP A 49 ? THR A 70 ? ASP A 49 THR A 70 1 ? 22 HELX_P HELX_P3 3 ASN A 73 ? GLY A 82 ? ASN A 73 GLY A 82 1 ? 10 HELX_P HELX_P4 4 ASN A 84 ? TYR A 95 ? ASN A 84 TYR A 95 1 ? 12 HELX_P HELX_P5 5 VAL B 6 ? VAL B 10 ? VAL B 6 VAL B 10 5 ? 5 HELX_P HELX_P6 6 LEU B 27 ? GLN B 41 ? LEU B 27 GLN B 41 1 ? 15 HELX_P HELX_P7 7 ASP B 49 ? THR B 70 ? ASP B 49 THR B 70 1 ? 22 HELX_P HELX_P8 8 ASN B 73 ? GLY B 82 ? ASN B 73 GLY B 82 1 ? 10 HELX_P HELX_P9 9 ASN B 84 ? TYR B 95 ? ASN B 84 TYR B 95 1 ? 12 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? C DA 1 N1 ? ? ? 1_555 D DT 27 N3 ? ? C DA 1 D DT 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? C DA 1 N6 ? ? ? 1_555 D DT 27 O4 ? ? C DA 1 D DT 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? C DA 2 N1 ? ? ? 1_555 D DT 26 N3 ? ? C DA 2 D DT 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? C DA 2 N6 ? ? ? 1_555 D DT 26 O4 ? ? C DA 2 D DT 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? C DA 3 N1 ? ? ? 1_555 D DT 25 N3 ? ? C DA 3 D DT 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? C DA 3 N6 ? ? ? 1_555 D DT 25 O4 ? ? C DA 3 D DT 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? C DT 4 N3 ? ? ? 1_555 D DA 24 N1 ? ? C DT 4 D DA 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? C DT 4 O4 ? ? ? 1_555 D DA 24 N6 ? ? C DT 4 D DA 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? C DT 5 N3 ? ? ? 1_555 D DA 23 N1 ? ? C DT 5 D DA 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? C DT 5 O4 ? ? ? 1_555 D DA 23 N6 ? ? C DT 5 D DA 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? C DT 6 N3 ? ? ? 1_555 D DA 22 N1 ? ? C DT 6 D DA 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? C DT 6 O4 ? ? ? 1_555 D DA 22 N6 ? ? C DT 6 D DA 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? C DG 7 N1 ? ? ? 1_555 D DC 21 N3 ? ? C DG 7 D DC 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? C DG 7 N2 ? ? ? 1_555 D DC 21 O2 ? ? C DG 7 D DC 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? C DG 7 O6 ? ? ? 1_555 D DC 21 N4 ? ? C DG 7 D DC 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? C DT 8 N3 ? ? ? 1_555 D DA 20 N1 ? ? C DT 8 D DA 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? C DT 8 O4 ? ? ? 1_555 D DA 20 N6 ? ? C DT 8 D DA 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? C DT 9 N3 ? ? ? 1_555 D DA 19 N1 ? ? C DT 9 D DA 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? C DT 9 O4 ? ? ? 1_555 D DA 19 N6 ? ? C DT 9 D DA 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? C DT 10 N3 ? ? ? 1_555 D DA 18 N1 ? ? C DT 10 D DA 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? C DT 10 O4 ? ? ? 1_555 D DA 18 N6 ? ? C DT 10 D DA 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? C DA 11 N1 ? ? ? 1_555 D DT 17 N3 ? ? C DA 11 D DT 17 1_555 ? ? ? ? ? ? 'DA-DT PAIR' ? ? ? hydrog23 hydrog ? ? C DA 12 N1 ? ? ? 1_555 D DT 16 N3 ? ? C DA 12 D DT 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? C DA 12 N6 ? ? ? 1_555 D DT 16 O4 ? ? C DA 12 D DT 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? C DA 13 N1 ? ? ? 1_555 D DT 15 N3 ? ? C DA 13 D DT 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? C DA 13 N6 ? ? ? 1_555 D DT 15 O4 ? ? C DA 13 D DT 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? C DT 14 N3 ? ? ? 1_555 D DA 14 N1 ? ? C DT 14 D DA 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? C DT 14 O4 ? ? ? 1_555 D DA 14 N6 ? ? C DT 14 D DA 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? C DT 15 N3 ? ? ? 1_555 D DA 13 N1 ? ? C DT 15 D DA 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? C DT 15 O4 ? ? ? 1_555 D DA 13 N6 ? ? C DT 15 D DA 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? C DT 16 N3 ? ? ? 1_555 D DA 12 N1 ? ? C DT 16 D DA 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? C DT 16 O4 ? ? ? 1_555 D DA 12 N6 ? ? C DT 16 D DA 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? C DT 17 N3 ? ? ? 1_555 D DA 11 N1 ? ? C DT 17 D DA 11 1_555 ? ? ? ? ? ? 'DT-DA PAIR' ? ? ? hydrog34 hydrog ? ? C DG 18 N1 ? ? ? 1_555 D DC 10 N3 ? ? C DG 18 D DC 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? C DG 18 N2 ? ? ? 1_555 D DC 10 O2 ? ? C DG 18 D DC 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? C DG 18 O6 ? ? ? 1_555 D DC 10 N4 ? ? C DG 18 D DC 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? C DA 19 N1 ? ? ? 1_555 D DT 9 N3 ? ? C DA 19 D DT 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? C DA 19 N6 ? ? ? 1_555 D DT 9 O4 ? ? C DA 19 D DT 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? C DG 20 N1 ? ? ? 1_555 D DC 8 N3 ? ? C DG 20 D DC 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? C DG 20 N2 ? ? ? 1_555 D DC 8 O2 ? ? C DG 20 D DC 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? C DG 20 O6 ? ? ? 1_555 D DC 8 N4 ? ? C DG 20 D DC 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? C DC 21 N3 ? ? ? 1_555 D DG 7 N1 ? ? C DC 21 D DG 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? C DC 21 N4 ? ? ? 1_555 D DG 7 O6 ? ? C DC 21 D DG 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? C DC 21 O2 ? ? ? 1_555 D DG 7 N2 ? ? C DC 21 D DG 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? C DA 22 N1 ? ? ? 1_555 D DT 6 N3 ? ? C DA 22 D DT 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? C DA 22 N6 ? ? ? 1_555 D DT 6 O4 ? ? C DA 22 D DT 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? C DA 23 N1 ? ? ? 1_555 D DT 5 N3 ? ? C DA 23 D DT 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? C DA 23 N6 ? ? ? 1_555 D DT 5 O4 ? ? C DA 23 D DT 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? C DA 24 N1 ? ? ? 1_555 D DT 4 N3 ? ? C DA 24 D DT 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? C DA 24 N6 ? ? ? 1_555 D DT 4 O4 ? ? C DA 24 D DT 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? C DT 25 N3 ? ? ? 1_555 D DA 3 N1 ? ? C DT 25 D DA 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? C DT 25 O4 ? ? ? 1_555 D DA 3 N6 ? ? C DT 25 D DA 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog53 hydrog ? ? C DT 26 N3 ? ? ? 1_555 D DA 2 N1 ? ? C DT 26 D DA 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog54 hydrog ? ? C DT 26 O4 ? ? ? 1_555 D DA 2 N6 ? ? C DT 26 D DA 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog55 hydrog ? ? C DT 27 N3 ? ? ? 1_555 D DA 1 N1 ? ? C DT 27 D DA 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog56 hydrog ? ? C DT 27 O4 ? ? ? 1_555 D DA 1 N6 ? ? C DT 27 D DA 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 ASN 43 B . ? ASN 43 B GLY 44 B ? GLY 44 B 1 0.14 2 ASN 43 B . ? ASN 43 B GLY 44 B ? GLY 44 B 1 0.70 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 2 ? B ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel B 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 THR A 12 ? VAL A 16 ? THR A 12 VAL A 16 A 2 VAL A 22 ? PRO A 26 ? VAL A 22 PRO A 26 B 1 THR B 12 ? VAL B 16 ? THR B 12 VAL B 16 B 2 VAL B 22 ? PRO B 26 ? VAL B 22 PRO B 26 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N THR A 15 ? N THR A 15 O THR A 23 ? O THR A 23 B 1 2 N THR B 15 ? N THR B 15 O THR B 23 ? O THR B 23 # _atom_sites.entry_id 3JR9 _atom_sites.fract_transf_matrix[1][1] 0.023277 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.010906 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.006486 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 ? ? ? A . n A 1 2 PHE 2 2 ? ? ? A . n A 1 3 GLU 3 3 ? ? ? A . n A 1 4 GLN 4 4 ? ? ? A . n A 1 5 ARG 5 5 ? ? ? A . n A 1 6 VAL 6 6 ? ? ? A . n A 1 7 ASN 7 7 ? ? ? A . n A 1 8 SER 8 8 8 SER SER A . n A 1 9 ASP 9 9 9 ASP ASP A . n A 1 10 VAL 10 10 10 VAL VAL A . n A 1 11 LEU 11 11 11 LEU LEU A . n A 1 12 THR 12 12 12 THR THR A . n A 1 13 VAL 13 13 13 VAL VAL A . n A 1 14 SER 14 14 14 SER SER A . n A 1 15 THR 15 15 15 THR THR A . n A 1 16 VAL 16 16 16 VAL VAL A . n A 1 17 ASN 17 17 17 ASN ASN A . n A 1 18 SER 18 18 18 SER SER A . n A 1 19 GLN 19 19 19 GLN GLN A . n A 1 20 ASP 20 20 20 ASP ASP A . n A 1 21 GLN 21 21 21 GLN GLN A . n A 1 22 VAL 22 22 22 VAL VAL A . n A 1 23 THR 23 23 23 THR THR A . n A 1 24 GLN 24 24 24 GLN GLN A . n A 1 25 LYS 25 25 25 LYS LYS A . n A 1 26 PRO 26 26 26 PRO PRO A . n A 1 27 LEU 27 27 27 LEU LEU A . n A 1 28 ARG 28 28 28 ARG ARG A . n A 1 29 ASP 29 29 29 ASP ASP A . n A 1 30 SER 30 30 30 SER SER A . n A 1 31 VAL 31 31 31 VAL VAL A . n A 1 32 LYS 32 32 32 LYS LYS A . n A 1 33 GLN 33 33 33 GLN GLN A . n A 1 34 ALA 34 34 34 ALA ALA A . n A 1 35 LEU 35 35 35 LEU LEU A . n A 1 36 LYS 36 36 36 LYS LYS A . n A 1 37 ASN 37 37 37 ASN ASN A . n A 1 38 TYR 38 38 38 TYR TYR A . n A 1 39 PHE 39 39 39 PHE PHE A . n A 1 40 ALA 40 40 40 ALA ALA A . n A 1 41 GLN 41 41 41 GLN GLN A . n A 1 42 LEU 42 42 42 LEU LEU A . n A 1 43 ASN 43 43 43 ASN ASN A . n A 1 44 GLY 44 44 44 GLY GLY A . n A 1 45 GLN 45 45 45 GLN GLN A . n A 1 46 ASP 46 46 46 ASP ASP A . n A 1 47 VAL 47 47 47 VAL VAL A . n A 1 48 ASN 48 48 48 ASN ASN A . n A 1 49 ASP 49 49 49 ASP ASP A . n A 1 50 LEU 50 50 50 LEU LEU A . n A 1 51 TYR 51 51 51 TYR TYR A . n A 1 52 GLU 52 52 52 GLU GLU A . n A 1 53 LEU 53 53 53 LEU LEU A . n A 1 54 VAL 54 54 54 VAL VAL A . n A 1 55 LEU 55 55 55 LEU LEU A . n A 1 56 ALA 56 56 56 ALA ALA A . n A 1 57 GLU 57 57 57 GLU GLU A . n A 1 58 VAL 58 58 58 VAL VAL A . n A 1 59 GLU 59 59 59 GLU GLU A . n A 1 60 GLN 60 60 60 GLN GLN A . n A 1 61 PRO 61 61 61 PRO PRO A . n A 1 62 LEU 62 62 62 LEU LEU A . n A 1 63 LEU 63 63 63 LEU LEU A . n A 1 64 ASP 64 64 64 ASP ASP A . n A 1 65 MET 65 65 65 MET MET A . n A 1 66 VAL 66 66 66 VAL VAL A . n A 1 67 MET 67 67 67 MET MET A . n A 1 68 GLN 68 68 68 GLN GLN A . n A 1 69 TYR 69 69 69 TYR TYR A . n A 1 70 THR 70 70 70 THR THR A . n A 1 71 ARG 71 71 71 ARG ARG A . n A 1 72 GLY 72 72 72 GLY GLY A . n A 1 73 ASN 73 73 73 ASN ASN A . n A 1 74 GLN 74 74 74 GLN GLN A . n A 1 75 THR 75 75 75 THR THR A . n A 1 76 ARG 76 76 76 ARG ARG A . n A 1 77 ALA 77 77 77 ALA ALA A . n A 1 78 ALA 78 78 78 ALA ALA A . n A 1 79 LEU 79 79 79 LEU LEU A . n A 1 80 MET 80 80 80 MET MET A . n A 1 81 MET 81 81 81 MET MET A . n A 1 82 GLY 82 82 82 GLY GLY A . n A 1 83 ILE 83 83 83 ILE ILE A . n A 1 84 ASN 84 84 84 ASN ASN A . n A 1 85 ARG 85 85 85 ARG ARG A . n A 1 86 GLY 86 86 86 GLY GLY A . n A 1 87 THR 87 87 87 THR THR A . n A 1 88 LEU 88 88 88 LEU LEU A . n A 1 89 ARG 89 89 89 ARG ARG A . n A 1 90 LYS 90 90 90 LYS LYS A . n A 1 91 LYS 91 91 91 LYS LYS A . n A 1 92 LEU 92 92 92 LEU LEU A . n A 1 93 LYS 93 93 93 LYS LYS A . n A 1 94 LYS 94 94 94 LYS LYS A . n A 1 95 TYR 95 95 95 TYR TYR A . n A 1 96 GLY 96 96 96 GLY GLY A . n A 1 97 MET 97 97 97 MET MET A . n A 1 98 ASN 98 98 98 ASN ASN A . n B 1 1 MET 1 1 1 MET MET B . n B 1 2 PHE 2 2 2 PHE PHE B . n B 1 3 GLU 3 3 3 GLU GLU B . n B 1 4 GLN 4 4 4 GLN GLN B . n B 1 5 ARG 5 5 5 ARG ARG B . n B 1 6 VAL 6 6 6 VAL VAL B . n B 1 7 ASN 7 7 7 ASN ASN B . n B 1 8 SER 8 8 8 SER SER B . n B 1 9 ASP 9 9 9 ASP ASP B . n B 1 10 VAL 10 10 10 VAL VAL B . n B 1 11 LEU 11 11 11 LEU LEU B . n B 1 12 THR 12 12 12 THR THR B . n B 1 13 VAL 13 13 13 VAL VAL B . n B 1 14 SER 14 14 14 SER SER B . n B 1 15 THR 15 15 15 THR THR B . n B 1 16 VAL 16 16 16 VAL VAL B . n B 1 17 ASN 17 17 17 ASN ASN B . n B 1 18 SER 18 18 18 SER SER B . n B 1 19 GLN 19 19 19 GLN GLN B . n B 1 20 ASP 20 20 20 ASP ASP B . n B 1 21 GLN 21 21 21 GLN GLN B . n B 1 22 VAL 22 22 22 VAL VAL B . n B 1 23 THR 23 23 23 THR THR B . n B 1 24 GLN 24 24 24 GLN GLN B . n B 1 25 LYS 25 25 25 LYS LYS B . n B 1 26 PRO 26 26 26 PRO PRO B . n B 1 27 LEU 27 27 27 LEU LEU B . n B 1 28 ARG 28 28 28 ARG ARG B . n B 1 29 ASP 29 29 29 ASP ASP B . n B 1 30 SER 30 30 30 SER SER B . n B 1 31 VAL 31 31 31 VAL VAL B . n B 1 32 LYS 32 32 32 LYS LYS B . n B 1 33 GLN 33 33 33 GLN GLN B . n B 1 34 ALA 34 34 34 ALA ALA B . n B 1 35 LEU 35 35 35 LEU LEU B . n B 1 36 LYS 36 36 36 LYS LYS B . n B 1 37 ASN 37 37 37 ASN ASN B . n B 1 38 TYR 38 38 38 TYR TYR B . n B 1 39 PHE 39 39 39 PHE PHE B . n B 1 40 ALA 40 40 40 ALA ALA B . n B 1 41 GLN 41 41 41 GLN GLN B . n B 1 42 LEU 42 42 42 LEU LEU B . n B 1 43 ASN 43 43 43 ASN ASN B . n B 1 44 GLY 44 44 44 GLY GLY B . n B 1 45 GLN 45 45 45 GLN GLN B . n B 1 46 ASP 46 46 46 ASP ASP B . n B 1 47 VAL 47 47 47 VAL VAL B . n B 1 48 ASN 48 48 48 ASN ASN B . n B 1 49 ASP 49 49 49 ASP ASP B . n B 1 50 LEU 50 50 50 LEU LEU B . n B 1 51 TYR 51 51 51 TYR TYR B . n B 1 52 GLU 52 52 52 GLU GLU B . n B 1 53 LEU 53 53 53 LEU LEU B . n B 1 54 VAL 54 54 54 VAL VAL B . n B 1 55 LEU 55 55 55 LEU LEU B . n B 1 56 ALA 56 56 56 ALA ALA B . n B 1 57 GLU 57 57 57 GLU GLU B . n B 1 58 VAL 58 58 58 VAL VAL B . n B 1 59 GLU 59 59 59 GLU GLU B . n B 1 60 GLN 60 60 60 GLN GLN B . n B 1 61 PRO 61 61 61 PRO PRO B . n B 1 62 LEU 62 62 62 LEU LEU B . n B 1 63 LEU 63 63 63 LEU LEU B . n B 1 64 ASP 64 64 64 ASP ASP B . n B 1 65 MET 65 65 65 MET MET B . n B 1 66 VAL 66 66 66 VAL VAL B . n B 1 67 MET 67 67 67 MET MET B . n B 1 68 GLN 68 68 68 GLN GLN B . n B 1 69 TYR 69 69 69 TYR TYR B . n B 1 70 THR 70 70 70 THR THR B . n B 1 71 ARG 71 71 71 ARG ARG B . n B 1 72 GLY 72 72 72 GLY GLY B . n B 1 73 ASN 73 73 73 ASN ASN B . n B 1 74 GLN 74 74 74 GLN GLN B . n B 1 75 THR 75 75 75 THR THR B . n B 1 76 ARG 76 76 76 ARG ARG B . n B 1 77 ALA 77 77 77 ALA ALA B . n B 1 78 ALA 78 78 78 ALA ALA B . n B 1 79 LEU 79 79 79 LEU LEU B . n B 1 80 MET 80 80 80 MET MET B . n B 1 81 MET 81 81 81 MET MET B . n B 1 82 GLY 82 82 82 GLY GLY B . n B 1 83 ILE 83 83 83 ILE ILE B . n B 1 84 ASN 84 84 84 ASN ASN B . n B 1 85 ARG 85 85 85 ARG ARG B . n B 1 86 GLY 86 86 86 GLY GLY B . n B 1 87 THR 87 87 87 THR THR B . n B 1 88 LEU 88 88 88 LEU LEU B . n B 1 89 ARG 89 89 89 ARG ARG B . n B 1 90 LYS 90 90 90 LYS LYS B . n B 1 91 LYS 91 91 91 LYS LYS B . n B 1 92 LEU 92 92 92 LEU LEU B . n B 1 93 LYS 93 93 93 LYS LYS B . n B 1 94 LYS 94 94 94 LYS LYS B . n B 1 95 TYR 95 95 95 TYR TYR B . n B 1 96 GLY 96 96 96 GLY GLY B . n B 1 97 MET 97 97 97 MET MET B . n B 1 98 ASN 98 98 98 ASN ASN B . n C 2 1 DA 1 1 1 DA DA C . n C 2 2 DA 2 2 2 DA DA C . n C 2 3 DA 3 3 3 DA DA C . n C 2 4 DT 4 4 4 DT DT C . n C 2 5 DT 5 5 5 DT DT C . n C 2 6 DT 6 6 6 DT DT C . n C 2 7 DG 7 7 7 DG DG C . n C 2 8 DT 8 8 8 DT DT C . n C 2 9 DT 9 9 9 DT DT C . n C 2 10 DT 10 10 10 DT DT C . n C 2 11 DA 11 11 11 DA DA C . n C 2 12 DA 12 12 12 DA DA C . n C 2 13 DA 13 13 13 DA DA C . n C 2 14 DT 14 14 14 DT DT C . n C 2 15 DT 15 15 15 DT DT C . n C 2 16 DT 16 16 16 DT DT C . n C 2 17 DT 17 17 17 DT DT C . n C 2 18 DG 18 18 18 DG DG C . n C 2 19 DA 19 19 19 DA DA C . n C 2 20 DG 20 20 20 DG DG C . n C 2 21 DC 21 21 21 DC DC C . n C 2 22 DA 22 22 22 DA DA C . n C 2 23 DA 23 23 23 DA DA C . n C 2 24 DA 24 24 24 DA DA C . n C 2 25 DT 25 25 25 DT DT C . n C 2 26 DT 26 26 26 DT DT C . n C 2 27 DT 27 27 27 DT DT C . n D 3 1 DA 1 1 1 DA DA D . n D 3 2 DA 2 2 2 DA DA D . n D 3 3 DA 3 3 3 DA DA D . n D 3 4 DT 4 4 4 DT DT D . n D 3 5 DT 5 5 5 DT DT D . n D 3 6 DT 6 6 6 DT DT D . n D 3 7 DG 7 7 7 DG DG D . n D 3 8 DC 8 8 8 DC DC D . n D 3 9 DT 9 9 9 DT DT D . n D 3 10 DC 10 10 10 DC DC D . n D 3 11 DA 11 11 11 DA DA D . n D 3 12 DA 12 12 12 DA DA D . n D 3 13 DA 13 13 13 DA DA D . n D 3 14 DA 14 14 14 DA DA D . n D 3 15 DT 15 15 15 DT DT D . n D 3 16 DT 16 16 16 DT DT D . n D 3 17 DT 17 17 17 DT DT D . n D 3 18 DA 18 18 18 DA DA D . n D 3 19 DA 19 19 19 DA DA D . n D 3 20 DA 20 20 20 DA DA D . n D 3 21 DC 21 21 21 DC DC D . n D 3 22 DA 22 22 22 DA DA D . n D 3 23 DA 23 23 23 DA DA D . n D 3 24 DA 24 24 24 DA DA D . n D 3 25 DT 25 25 25 DT DT D . n D 3 26 DT 26 26 26 DT DT D . n D 3 27 DT 27 27 27 DT DT D . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 4 HOH 1 99 2 HOH HOH A . E 4 HOH 2 100 3 HOH HOH A . E 4 HOH 3 101 7 HOH HOH A . E 4 HOH 4 102 26 HOH HOH A . E 4 HOH 5 103 35 HOH HOH A . E 4 HOH 6 104 41 HOH HOH A . E 4 HOH 7 105 44 HOH HOH A . E 4 HOH 8 106 45 HOH HOH A . F 4 HOH 1 99 4 HOH HOH B . F 4 HOH 2 100 6 HOH HOH B . F 4 HOH 3 101 8 HOH HOH B . F 4 HOH 4 102 10 HOH HOH B . F 4 HOH 5 103 16 HOH HOH B . F 4 HOH 6 104 21 HOH HOH B . F 4 HOH 7 105 23 HOH HOH B . F 4 HOH 8 106 40 HOH HOH B . G 4 HOH 1 28 17 HOH HOH C . G 4 HOH 2 29 20 HOH HOH C . G 4 HOH 3 34 34 HOH HOH C . H 4 HOH 1 28 18 HOH HOH D . H 4 HOH 2 29 22 HOH HOH D . H 4 HOH 3 39 39 HOH HOH D . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 8880 ? 1 MORE -64 ? 1 'SSA (A^2)' 18910 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2010-04-28 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2017-11-01 4 'Structure model' 1 3 2023-09-06 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Advisory 2 2 'Structure model' 'Source and taxonomy' 3 2 'Structure model' 'Version format compliance' 4 3 'Structure model' 'Refinement description' 5 4 'Structure model' 'Data collection' 6 4 'Structure model' 'Database references' 7 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' software 2 4 'Structure model' chem_comp_atom 3 4 'Structure model' chem_comp_bond 4 4 'Structure model' database_2 5 4 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] 'X-RAY DIFFRACTION' 1 ? refined 12.7418 10.2872 8.9660 0.0870 0.0783 -0.0006 0.0493 -0.0097 -0.0214 0.4067 1.2594 1.3875 -0.1764 0.3032 0.6739 -0.0194 0.1456 -0.1263 -0.0094 0.1323 -0.0407 0.1891 0.2373 0.1070 'X-RAY DIFFRACTION' 2 ? refined 9.7235 10.6798 2.2911 0.0462 0.0577 0.0137 -0.0092 0.0294 -0.0270 0.7389 1.2238 0.8074 -0.1237 -0.2402 -0.3507 -0.0418 0.1242 -0.0824 -0.0864 0.0862 0.0870 0.0427 0.1218 0.0956 'X-RAY DIFFRACTION' 3 ? refined 11.4267 -10.4430 5.4747 0.2521 -0.0888 -0.0850 0.0722 -0.1415 0.0053 0.7449 0.4823 4.8065 0.0159 1.4052 0.0381 0.4073 0.3323 -0.7396 0.1039 -0.4333 0.0425 0.0127 0.8205 0.2790 'X-RAY DIFFRACTION' 4 ? refined 10.4746 -10.4420 6.1111 0.2269 -0.1680 -0.0859 -0.0128 -0.1558 -0.0420 0.8332 0.3616 4.8382 0.0647 1.2258 0.3149 0.3269 0.3066 -0.6335 -0.0087 -0.4170 0.0531 0.0837 0.6336 -0.0310 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection_details _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection 'X-RAY DIFFRACTION' 1 1 A 8 A 98 ? . . . . ? 'X-RAY DIFFRACTION' 2 2 B 1 B 98 ? . . . . ? 'X-RAY DIFFRACTION' 3 3 C 1 C 27 ? . . . . ? 'X-RAY DIFFRACTION' 4 4 D 1 D 27 ? . . . . ? # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 DENZO . ? package 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data reduction' http://www.hkl-xray.com/ ? ? 2 SCALEPACK . ? package 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data scaling' http://www.hkl-xray.com/ ? ? 3 REFMAC 5.2.0019 ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 4 PDB_EXTRACT 3.005 'June 11, 2008' package PDB help@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 5 PHASER . ? ? ? ? phasing ? ? ? # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" C DT 8 ? ? "C1'" C DT 8 ? ? N1 C DT 8 ? ? 110.33 108.30 2.03 0.30 N 2 1 "O4'" C DT 9 ? ? "C1'" C DT 9 ? ? N1 C DT 9 ? ? 111.81 108.30 3.51 0.30 N 3 1 "O4'" C DT 10 ? ? "C1'" C DT 10 ? ? N1 C DT 10 ? ? 110.38 108.30 2.08 0.30 N 4 1 C5 C DT 17 ? ? C4 C DT 17 ? ? O4 C DT 17 ? ? 120.32 124.90 -4.58 0.70 N 5 1 "O4'" C DA 19 ? ? "C1'" C DA 19 ? ? N9 C DA 19 ? ? 110.15 108.30 1.85 0.30 N 6 1 "C3'" C DA 19 ? ? "O3'" C DA 19 ? ? P C DG 20 ? ? 128.66 119.70 8.96 1.20 Y 7 1 "O4'" C DG 20 ? ? "C1'" C DG 20 ? ? N9 C DG 20 ? ? 112.97 108.30 4.67 0.30 N 8 1 "C3'" C DA 22 ? ? "O3'" C DA 22 ? ? P C DA 23 ? ? 127.75 119.70 8.05 1.20 Y 9 1 "O4'" C DT 26 ? ? "C1'" C DT 26 ? ? N1 C DT 26 ? ? 103.37 108.00 -4.63 0.70 N 10 1 "O4'" D DA 1 ? ? "C1'" D DA 1 ? ? N9 D DA 1 ? ? 111.94 108.30 3.64 0.30 N 11 1 "C3'" D DA 1 ? ? "O3'" D DA 1 ? ? P D DA 2 ? ? 129.40 119.70 9.70 1.20 Y 12 1 "O4'" D DC 8 ? ? "C4'" D DC 8 ? ? "C3'" D DC 8 ? ? 101.19 104.50 -3.31 0.40 N 13 1 "O4'" D DC 8 ? ? "C1'" D DC 8 ? ? N1 D DC 8 ? ? 111.68 108.30 3.38 0.30 N 14 1 "O4'" D DT 9 ? ? "C4'" D DT 9 ? ? "C3'" D DT 9 ? ? 102.07 104.50 -2.43 0.40 N 15 1 "O4'" D DA 11 ? ? "C1'" D DA 11 ? ? N9 D DA 11 ? ? 112.52 108.30 4.22 0.30 N 16 1 "C3'" D DA 11 ? ? "O3'" D DA 11 ? ? P D DA 12 ? ? 127.15 119.70 7.45 1.20 Y 17 1 "O4'" D DA 12 ? ? "C1'" D DA 12 ? ? N9 D DA 12 ? ? 110.21 108.30 1.91 0.30 N 18 1 "C3'" D DA 12 ? ? "O3'" D DA 12 ? ? P D DA 13 ? ? 127.35 119.70 7.65 1.20 Y 19 1 "C3'" D DA 18 ? ? "O3'" D DA 18 ? ? P D DA 19 ? ? 127.71 119.70 8.01 1.20 Y 20 1 "O4'" D DA 19 ? ? "C1'" D DA 19 ? ? N9 D DA 19 ? ? 110.91 108.30 2.61 0.30 N 21 1 "C3'" D DA 19 ? ? "O3'" D DA 19 ? ? P D DA 20 ? ? 127.32 119.70 7.62 1.20 Y 22 1 "O4'" D DA 20 ? ? "C1'" D DA 20 ? ? N9 D DA 20 ? ? 111.29 108.30 2.99 0.30 N 23 1 "O4'" D DC 21 ? ? "C1'" D DC 21 ? ? N1 D DC 21 ? ? 111.60 108.30 3.30 0.30 N 24 1 "O4'" D DT 25 ? ? "C1'" D DT 25 ? ? N1 D DT 25 ? ? 111.40 108.30 3.10 0.30 N 25 1 C5 D DT 25 ? ? C4 D DT 25 ? ? O4 D DT 25 ? ? 120.33 124.90 -4.57 0.70 N 26 1 "C3'" D DT 25 ? ? "O3'" D DT 25 ? ? P D DT 26 ? ? 127.19 119.70 7.49 1.20 Y 27 1 "O4'" D DT 26 ? ? "C1'" D DT 26 ? ? N1 D DT 26 ? ? 101.07 108.00 -6.93 0.70 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASN B 48 ? ? -155.22 29.42 2 1 ASP B 49 ? ? -154.45 22.88 3 1 ASP B 49 ? ? -151.37 15.92 4 1 MET B 97 ? ? -109.22 53.89 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 B MET 1 ? CG ? B MET 1 CG 2 1 Y 1 B MET 1 ? SD ? B MET 1 SD 3 1 Y 1 B MET 1 ? CE ? B MET 1 CE # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET 1 ? A MET 1 2 1 Y 1 A PHE 2 ? A PHE 2 3 1 Y 1 A GLU 3 ? A GLU 3 4 1 Y 1 A GLN 4 ? A GLN 4 5 1 Y 1 A ARG 5 ? A ARG 5 6 1 Y 1 A VAL 6 ? A VAL 6 7 1 Y 1 A ASN 7 ? A ASN 7 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 DA OP3 O N N 74 DA P P N N 75 DA OP1 O N N 76 DA OP2 O N N 77 DA "O5'" O N N 78 DA "C5'" C N N 79 DA "C4'" C N R 80 DA "O4'" O N N 81 DA "C3'" C N S 82 DA "O3'" O N N 83 DA "C2'" C N N 84 DA "C1'" C N R 85 DA N9 N Y N 86 DA C8 C Y N 87 DA N7 N Y N 88 DA C5 C Y N 89 DA C6 C Y N 90 DA N6 N N N 91 DA N1 N Y N 92 DA C2 C Y N 93 DA N3 N Y N 94 DA C4 C Y N 95 DA HOP3 H N N 96 DA HOP2 H N N 97 DA "H5'" H N N 98 DA "H5''" H N N 99 DA "H4'" H N N 100 DA "H3'" H N N 101 DA "HO3'" H N N 102 DA "H2'" H N N 103 DA "H2''" H N N 104 DA "H1'" H N N 105 DA H8 H N N 106 DA H61 H N N 107 DA H62 H N N 108 DA H2 H N N 109 DC OP3 O N N 110 DC P P N N 111 DC OP1 O N N 112 DC OP2 O N N 113 DC "O5'" O N N 114 DC "C5'" C N N 115 DC "C4'" C N R 116 DC "O4'" O N N 117 DC "C3'" C N S 118 DC "O3'" O N N 119 DC "C2'" C N N 120 DC "C1'" C N R 121 DC N1 N N N 122 DC C2 C N N 123 DC O2 O N N 124 DC N3 N N N 125 DC C4 C N N 126 DC N4 N N N 127 DC C5 C N N 128 DC C6 C N N 129 DC HOP3 H N N 130 DC HOP2 H N N 131 DC "H5'" H N N 132 DC "H5''" H N N 133 DC "H4'" H N N 134 DC "H3'" H N N 135 DC "HO3'" H N N 136 DC "H2'" H N N 137 DC "H2''" H N N 138 DC "H1'" H N N 139 DC H41 H N N 140 DC H42 H N N 141 DC H5 H N N 142 DC H6 H N N 143 DG OP3 O N N 144 DG P P N N 145 DG OP1 O N N 146 DG OP2 O N N 147 DG "O5'" O N N 148 DG "C5'" C N N 149 DG "C4'" C N R 150 DG "O4'" O N N 151 DG "C3'" C N S 152 DG "O3'" O N N 153 DG "C2'" C N N 154 DG "C1'" C N R 155 DG N9 N Y N 156 DG C8 C Y N 157 DG N7 N Y N 158 DG C5 C Y N 159 DG C6 C N N 160 DG O6 O N N 161 DG N1 N N N 162 DG C2 C N N 163 DG N2 N N N 164 DG N3 N N N 165 DG C4 C Y N 166 DG HOP3 H N N 167 DG HOP2 H N N 168 DG "H5'" H N N 169 DG "H5''" H N N 170 DG "H4'" H N N 171 DG "H3'" H N N 172 DG "HO3'" H N N 173 DG "H2'" H N N 174 DG "H2''" H N N 175 DG "H1'" H N N 176 DG H8 H N N 177 DG H1 H N N 178 DG H21 H N N 179 DG H22 H N N 180 DT OP3 O N N 181 DT P P N N 182 DT OP1 O N N 183 DT OP2 O N N 184 DT "O5'" O N N 185 DT "C5'" C N N 186 DT "C4'" C N R 187 DT "O4'" O N N 188 DT "C3'" C N S 189 DT "O3'" O N N 190 DT "C2'" C N N 191 DT "C1'" C N R 192 DT N1 N N N 193 DT C2 C N N 194 DT O2 O N N 195 DT N3 N N N 196 DT C4 C N N 197 DT O4 O N N 198 DT C5 C N N 199 DT C7 C N N 200 DT C6 C N N 201 DT HOP3 H N N 202 DT HOP2 H N N 203 DT "H5'" H N N 204 DT "H5''" H N N 205 DT "H4'" H N N 206 DT "H3'" H N N 207 DT "HO3'" H N N 208 DT "H2'" H N N 209 DT "H2''" H N N 210 DT "H1'" H N N 211 DT H3 H N N 212 DT H71 H N N 213 DT H72 H N N 214 DT H73 H N N 215 DT H6 H N N 216 GLN N N N N 217 GLN CA C N S 218 GLN C C N N 219 GLN O O N N 220 GLN CB C N N 221 GLN CG C N N 222 GLN CD C N N 223 GLN OE1 O N N 224 GLN NE2 N N N 225 GLN OXT O N N 226 GLN H H N N 227 GLN H2 H N N 228 GLN HA H N N 229 GLN HB2 H N N 230 GLN HB3 H N N 231 GLN HG2 H N N 232 GLN HG3 H N N 233 GLN HE21 H N N 234 GLN HE22 H N N 235 GLN HXT H N N 236 GLU N N N N 237 GLU CA C N S 238 GLU C C N N 239 GLU O O N N 240 GLU CB C N N 241 GLU CG C N N 242 GLU CD C N N 243 GLU OE1 O N N 244 GLU OE2 O N N 245 GLU OXT O N N 246 GLU H H N N 247 GLU H2 H N N 248 GLU HA H N N 249 GLU HB2 H N N 250 GLU HB3 H N N 251 GLU HG2 H N N 252 GLU HG3 H N N 253 GLU HE2 H N N 254 GLU HXT H N N 255 GLY N N N N 256 GLY CA C N N 257 GLY C C N N 258 GLY O O N N 259 GLY OXT O N N 260 GLY H H N N 261 GLY H2 H N N 262 GLY HA2 H N N 263 GLY HA3 H N N 264 GLY HXT H N N 265 HOH O O N N 266 HOH H1 H N N 267 HOH H2 H N N 268 ILE N N N N 269 ILE CA C N S 270 ILE C C N N 271 ILE O O N N 272 ILE CB C N S 273 ILE CG1 C N N 274 ILE CG2 C N N 275 ILE CD1 C N N 276 ILE OXT O N N 277 ILE H H N N 278 ILE H2 H N N 279 ILE HA H N N 280 ILE HB H N N 281 ILE HG12 H N N 282 ILE HG13 H N N 283 ILE HG21 H N N 284 ILE HG22 H N N 285 ILE HG23 H N N 286 ILE HD11 H N N 287 ILE HD12 H N N 288 ILE HD13 H N N 289 ILE HXT H N N 290 LEU N N N N 291 LEU CA C N S 292 LEU C C N N 293 LEU O O N N 294 LEU CB C N N 295 LEU CG C N N 296 LEU CD1 C N N 297 LEU CD2 C N N 298 LEU OXT O N N 299 LEU H H N N 300 LEU H2 H N N 301 LEU HA H N N 302 LEU HB2 H N N 303 LEU HB3 H N N 304 LEU HG H N N 305 LEU HD11 H N N 306 LEU HD12 H N N 307 LEU HD13 H N N 308 LEU HD21 H N N 309 LEU HD22 H N N 310 LEU HD23 H N N 311 LEU HXT H N N 312 LYS N N N N 313 LYS CA C N S 314 LYS C C N N 315 LYS O O N N 316 LYS CB C N N 317 LYS CG C N N 318 LYS CD C N N 319 LYS CE C N N 320 LYS NZ N N N 321 LYS OXT O N N 322 LYS H H N N 323 LYS H2 H N N 324 LYS HA H N N 325 LYS HB2 H N N 326 LYS HB3 H N N 327 LYS HG2 H N N 328 LYS HG3 H N N 329 LYS HD2 H N N 330 LYS HD3 H N N 331 LYS HE2 H N N 332 LYS HE3 H N N 333 LYS HZ1 H N N 334 LYS HZ2 H N N 335 LYS HZ3 H N N 336 LYS HXT H N N 337 MET N N N N 338 MET CA C N S 339 MET C C N N 340 MET O O N N 341 MET CB C N N 342 MET CG C N N 343 MET SD S N N 344 MET CE C N N 345 MET OXT O N N 346 MET H H N N 347 MET H2 H N N 348 MET HA H N N 349 MET HB2 H N N 350 MET HB3 H N N 351 MET HG2 H N N 352 MET HG3 H N N 353 MET HE1 H N N 354 MET HE2 H N N 355 MET HE3 H N N 356 MET HXT H N N 357 PHE N N N N 358 PHE CA C N S 359 PHE C C N N 360 PHE O O N N 361 PHE CB C N N 362 PHE CG C Y N 363 PHE CD1 C Y N 364 PHE CD2 C Y N 365 PHE CE1 C Y N 366 PHE CE2 C Y N 367 PHE CZ C Y N 368 PHE OXT O N N 369 PHE H H N N 370 PHE H2 H N N 371 PHE HA H N N 372 PHE HB2 H N N 373 PHE HB3 H N N 374 PHE HD1 H N N 375 PHE HD2 H N N 376 PHE HE1 H N N 377 PHE HE2 H N N 378 PHE HZ H N N 379 PHE HXT H N N 380 PRO N N N N 381 PRO CA C N S 382 PRO C C N N 383 PRO O O N N 384 PRO CB C N N 385 PRO CG C N N 386 PRO CD C N N 387 PRO OXT O N N 388 PRO H H N N 389 PRO HA H N N 390 PRO HB2 H N N 391 PRO HB3 H N N 392 PRO HG2 H N N 393 PRO HG3 H N N 394 PRO HD2 H N N 395 PRO HD3 H N N 396 PRO HXT H N N 397 SER N N N N 398 SER CA C N S 399 SER C C N N 400 SER O O N N 401 SER CB C N N 402 SER OG O N N 403 SER OXT O N N 404 SER H H N N 405 SER H2 H N N 406 SER HA H N N 407 SER HB2 H N N 408 SER HB3 H N N 409 SER HG H N N 410 SER HXT H N N 411 THR N N N N 412 THR CA C N S 413 THR C C N N 414 THR O O N N 415 THR CB C N R 416 THR OG1 O N N 417 THR CG2 C N N 418 THR OXT O N N 419 THR H H N N 420 THR H2 H N N 421 THR HA H N N 422 THR HB H N N 423 THR HG1 H N N 424 THR HG21 H N N 425 THR HG22 H N N 426 THR HG23 H N N 427 THR HXT H N N 428 TYR N N N N 429 TYR CA C N S 430 TYR C C N N 431 TYR O O N N 432 TYR CB C N N 433 TYR CG C Y N 434 TYR CD1 C Y N 435 TYR CD2 C Y N 436 TYR CE1 C Y N 437 TYR CE2 C Y N 438 TYR CZ C Y N 439 TYR OH O N N 440 TYR OXT O N N 441 TYR H H N N 442 TYR H2 H N N 443 TYR HA H N N 444 TYR HB2 H N N 445 TYR HB3 H N N 446 TYR HD1 H N N 447 TYR HD2 H N N 448 TYR HE1 H N N 449 TYR HE2 H N N 450 TYR HH H N N 451 TYR HXT H N N 452 VAL N N N N 453 VAL CA C N S 454 VAL C C N N 455 VAL O O N N 456 VAL CB C N N 457 VAL CG1 C N N 458 VAL CG2 C N N 459 VAL OXT O N N 460 VAL H H N N 461 VAL H2 H N N 462 VAL HA H N N 463 VAL HB H N N 464 VAL HG11 H N N 465 VAL HG12 H N N 466 VAL HG13 H N N 467 VAL HG21 H N N 468 VAL HG22 H N N 469 VAL HG23 H N N 470 VAL HXT H N N 471 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 DA OP3 P sing N N 70 DA OP3 HOP3 sing N N 71 DA P OP1 doub N N 72 DA P OP2 sing N N 73 DA P "O5'" sing N N 74 DA OP2 HOP2 sing N N 75 DA "O5'" "C5'" sing N N 76 DA "C5'" "C4'" sing N N 77 DA "C5'" "H5'" sing N N 78 DA "C5'" "H5''" sing N N 79 DA "C4'" "O4'" sing N N 80 DA "C4'" "C3'" sing N N 81 DA "C4'" "H4'" sing N N 82 DA "O4'" "C1'" sing N N 83 DA "C3'" "O3'" sing N N 84 DA "C3'" "C2'" sing N N 85 DA "C3'" "H3'" sing N N 86 DA "O3'" "HO3'" sing N N 87 DA "C2'" "C1'" sing N N 88 DA "C2'" "H2'" sing N N 89 DA "C2'" "H2''" sing N N 90 DA "C1'" N9 sing N N 91 DA "C1'" "H1'" sing N N 92 DA N9 C8 sing Y N 93 DA N9 C4 sing Y N 94 DA C8 N7 doub Y N 95 DA C8 H8 sing N N 96 DA N7 C5 sing Y N 97 DA C5 C6 sing Y N 98 DA C5 C4 doub Y N 99 DA C6 N6 sing N N 100 DA C6 N1 doub Y N 101 DA N6 H61 sing N N 102 DA N6 H62 sing N N 103 DA N1 C2 sing Y N 104 DA C2 N3 doub Y N 105 DA C2 H2 sing N N 106 DA N3 C4 sing Y N 107 DC OP3 P sing N N 108 DC OP3 HOP3 sing N N 109 DC P OP1 doub N N 110 DC P OP2 sing N N 111 DC P "O5'" sing N N 112 DC OP2 HOP2 sing N N 113 DC "O5'" "C5'" sing N N 114 DC "C5'" "C4'" sing N N 115 DC "C5'" "H5'" sing N N 116 DC "C5'" "H5''" sing N N 117 DC "C4'" "O4'" sing N N 118 DC "C4'" "C3'" sing N N 119 DC "C4'" "H4'" sing N N 120 DC "O4'" "C1'" sing N N 121 DC "C3'" "O3'" sing N N 122 DC "C3'" "C2'" sing N N 123 DC "C3'" "H3'" sing N N 124 DC "O3'" "HO3'" sing N N 125 DC "C2'" "C1'" sing N N 126 DC "C2'" "H2'" sing N N 127 DC "C2'" "H2''" sing N N 128 DC "C1'" N1 sing N N 129 DC "C1'" "H1'" sing N N 130 DC N1 C2 sing N N 131 DC N1 C6 sing N N 132 DC C2 O2 doub N N 133 DC C2 N3 sing N N 134 DC N3 C4 doub N N 135 DC C4 N4 sing N N 136 DC C4 C5 sing N N 137 DC N4 H41 sing N N 138 DC N4 H42 sing N N 139 DC C5 C6 doub N N 140 DC C5 H5 sing N N 141 DC C6 H6 sing N N 142 DG OP3 P sing N N 143 DG OP3 HOP3 sing N N 144 DG P OP1 doub N N 145 DG P OP2 sing N N 146 DG P "O5'" sing N N 147 DG OP2 HOP2 sing N N 148 DG "O5'" "C5'" sing N N 149 DG "C5'" "C4'" sing N N 150 DG "C5'" "H5'" sing N N 151 DG "C5'" "H5''" sing N N 152 DG "C4'" "O4'" sing N N 153 DG "C4'" "C3'" sing N N 154 DG "C4'" "H4'" sing N N 155 DG "O4'" "C1'" sing N N 156 DG "C3'" "O3'" sing N N 157 DG "C3'" "C2'" sing N N 158 DG "C3'" "H3'" sing N N 159 DG "O3'" "HO3'" sing N N 160 DG "C2'" "C1'" sing N N 161 DG "C2'" "H2'" sing N N 162 DG "C2'" "H2''" sing N N 163 DG "C1'" N9 sing N N 164 DG "C1'" "H1'" sing N N 165 DG N9 C8 sing Y N 166 DG N9 C4 sing Y N 167 DG C8 N7 doub Y N 168 DG C8 H8 sing N N 169 DG N7 C5 sing Y N 170 DG C5 C6 sing N N 171 DG C5 C4 doub Y N 172 DG C6 O6 doub N N 173 DG C6 N1 sing N N 174 DG N1 C2 sing N N 175 DG N1 H1 sing N N 176 DG C2 N2 sing N N 177 DG C2 N3 doub N N 178 DG N2 H21 sing N N 179 DG N2 H22 sing N N 180 DG N3 C4 sing N N 181 DT OP3 P sing N N 182 DT OP3 HOP3 sing N N 183 DT P OP1 doub N N 184 DT P OP2 sing N N 185 DT P "O5'" sing N N 186 DT OP2 HOP2 sing N N 187 DT "O5'" "C5'" sing N N 188 DT "C5'" "C4'" sing N N 189 DT "C5'" "H5'" sing N N 190 DT "C5'" "H5''" sing N N 191 DT "C4'" "O4'" sing N N 192 DT "C4'" "C3'" sing N N 193 DT "C4'" "H4'" sing N N 194 DT "O4'" "C1'" sing N N 195 DT "C3'" "O3'" sing N N 196 DT "C3'" "C2'" sing N N 197 DT "C3'" "H3'" sing N N 198 DT "O3'" "HO3'" sing N N 199 DT "C2'" "C1'" sing N N 200 DT "C2'" "H2'" sing N N 201 DT "C2'" "H2''" sing N N 202 DT "C1'" N1 sing N N 203 DT "C1'" "H1'" sing N N 204 DT N1 C2 sing N N 205 DT N1 C6 sing N N 206 DT C2 O2 doub N N 207 DT C2 N3 sing N N 208 DT N3 C4 sing N N 209 DT N3 H3 sing N N 210 DT C4 O4 doub N N 211 DT C4 C5 sing N N 212 DT C5 C7 sing N N 213 DT C5 C6 doub N N 214 DT C7 H71 sing N N 215 DT C7 H72 sing N N 216 DT C7 H73 sing N N 217 DT C6 H6 sing N N 218 GLN N CA sing N N 219 GLN N H sing N N 220 GLN N H2 sing N N 221 GLN CA C sing N N 222 GLN CA CB sing N N 223 GLN CA HA sing N N 224 GLN C O doub N N 225 GLN C OXT sing N N 226 GLN CB CG sing N N 227 GLN CB HB2 sing N N 228 GLN CB HB3 sing N N 229 GLN CG CD sing N N 230 GLN CG HG2 sing N N 231 GLN CG HG3 sing N N 232 GLN CD OE1 doub N N 233 GLN CD NE2 sing N N 234 GLN NE2 HE21 sing N N 235 GLN NE2 HE22 sing N N 236 GLN OXT HXT sing N N 237 GLU N CA sing N N 238 GLU N H sing N N 239 GLU N H2 sing N N 240 GLU CA C sing N N 241 GLU CA CB sing N N 242 GLU CA HA sing N N 243 GLU C O doub N N 244 GLU C OXT sing N N 245 GLU CB CG sing N N 246 GLU CB HB2 sing N N 247 GLU CB HB3 sing N N 248 GLU CG CD sing N N 249 GLU CG HG2 sing N N 250 GLU CG HG3 sing N N 251 GLU CD OE1 doub N N 252 GLU CD OE2 sing N N 253 GLU OE2 HE2 sing N N 254 GLU OXT HXT sing N N 255 GLY N CA sing N N 256 GLY N H sing N N 257 GLY N H2 sing N N 258 GLY CA C sing N N 259 GLY CA HA2 sing N N 260 GLY CA HA3 sing N N 261 GLY C O doub N N 262 GLY C OXT sing N N 263 GLY OXT HXT sing N N 264 HOH O H1 sing N N 265 HOH O H2 sing N N 266 ILE N CA sing N N 267 ILE N H sing N N 268 ILE N H2 sing N N 269 ILE CA C sing N N 270 ILE CA CB sing N N 271 ILE CA HA sing N N 272 ILE C O doub N N 273 ILE C OXT sing N N 274 ILE CB CG1 sing N N 275 ILE CB CG2 sing N N 276 ILE CB HB sing N N 277 ILE CG1 CD1 sing N N 278 ILE CG1 HG12 sing N N 279 ILE CG1 HG13 sing N N 280 ILE CG2 HG21 sing N N 281 ILE CG2 HG22 sing N N 282 ILE CG2 HG23 sing N N 283 ILE CD1 HD11 sing N N 284 ILE CD1 HD12 sing N N 285 ILE CD1 HD13 sing N N 286 ILE OXT HXT sing N N 287 LEU N CA sing N N 288 LEU N H sing N N 289 LEU N H2 sing N N 290 LEU CA C sing N N 291 LEU CA CB sing N N 292 LEU CA HA sing N N 293 LEU C O doub N N 294 LEU C OXT sing N N 295 LEU CB CG sing N N 296 LEU CB HB2 sing N N 297 LEU CB HB3 sing N N 298 LEU CG CD1 sing N N 299 LEU CG CD2 sing N N 300 LEU CG HG sing N N 301 LEU CD1 HD11 sing N N 302 LEU CD1 HD12 sing N N 303 LEU CD1 HD13 sing N N 304 LEU CD2 HD21 sing N N 305 LEU CD2 HD22 sing N N 306 LEU CD2 HD23 sing N N 307 LEU OXT HXT sing N N 308 LYS N CA sing N N 309 LYS N H sing N N 310 LYS N H2 sing N N 311 LYS CA C sing N N 312 LYS CA CB sing N N 313 LYS CA HA sing N N 314 LYS C O doub N N 315 LYS C OXT sing N N 316 LYS CB CG sing N N 317 LYS CB HB2 sing N N 318 LYS CB HB3 sing N N 319 LYS CG CD sing N N 320 LYS CG HG2 sing N N 321 LYS CG HG3 sing N N 322 LYS CD CE sing N N 323 LYS CD HD2 sing N N 324 LYS CD HD3 sing N N 325 LYS CE NZ sing N N 326 LYS CE HE2 sing N N 327 LYS CE HE3 sing N N 328 LYS NZ HZ1 sing N N 329 LYS NZ HZ2 sing N N 330 LYS NZ HZ3 sing N N 331 LYS OXT HXT sing N N 332 MET N CA sing N N 333 MET N H sing N N 334 MET N H2 sing N N 335 MET CA C sing N N 336 MET CA CB sing N N 337 MET CA HA sing N N 338 MET C O doub N N 339 MET C OXT sing N N 340 MET CB CG sing N N 341 MET CB HB2 sing N N 342 MET CB HB3 sing N N 343 MET CG SD sing N N 344 MET CG HG2 sing N N 345 MET CG HG3 sing N N 346 MET SD CE sing N N 347 MET CE HE1 sing N N 348 MET CE HE2 sing N N 349 MET CE HE3 sing N N 350 MET OXT HXT sing N N 351 PHE N CA sing N N 352 PHE N H sing N N 353 PHE N H2 sing N N 354 PHE CA C sing N N 355 PHE CA CB sing N N 356 PHE CA HA sing N N 357 PHE C O doub N N 358 PHE C OXT sing N N 359 PHE CB CG sing N N 360 PHE CB HB2 sing N N 361 PHE CB HB3 sing N N 362 PHE CG CD1 doub Y N 363 PHE CG CD2 sing Y N 364 PHE CD1 CE1 sing Y N 365 PHE CD1 HD1 sing N N 366 PHE CD2 CE2 doub Y N 367 PHE CD2 HD2 sing N N 368 PHE CE1 CZ doub Y N 369 PHE CE1 HE1 sing N N 370 PHE CE2 CZ sing Y N 371 PHE CE2 HE2 sing N N 372 PHE CZ HZ sing N N 373 PHE OXT HXT sing N N 374 PRO N CA sing N N 375 PRO N CD sing N N 376 PRO N H sing N N 377 PRO CA C sing N N 378 PRO CA CB sing N N 379 PRO CA HA sing N N 380 PRO C O doub N N 381 PRO C OXT sing N N 382 PRO CB CG sing N N 383 PRO CB HB2 sing N N 384 PRO CB HB3 sing N N 385 PRO CG CD sing N N 386 PRO CG HG2 sing N N 387 PRO CG HG3 sing N N 388 PRO CD HD2 sing N N 389 PRO CD HD3 sing N N 390 PRO OXT HXT sing N N 391 SER N CA sing N N 392 SER N H sing N N 393 SER N H2 sing N N 394 SER CA C sing N N 395 SER CA CB sing N N 396 SER CA HA sing N N 397 SER C O doub N N 398 SER C OXT sing N N 399 SER CB OG sing N N 400 SER CB HB2 sing N N 401 SER CB HB3 sing N N 402 SER OG HG sing N N 403 SER OXT HXT sing N N 404 THR N CA sing N N 405 THR N H sing N N 406 THR N H2 sing N N 407 THR CA C sing N N 408 THR CA CB sing N N 409 THR CA HA sing N N 410 THR C O doub N N 411 THR C OXT sing N N 412 THR CB OG1 sing N N 413 THR CB CG2 sing N N 414 THR CB HB sing N N 415 THR OG1 HG1 sing N N 416 THR CG2 HG21 sing N N 417 THR CG2 HG22 sing N N 418 THR CG2 HG23 sing N N 419 THR OXT HXT sing N N 420 TYR N CA sing N N 421 TYR N H sing N N 422 TYR N H2 sing N N 423 TYR CA C sing N N 424 TYR CA CB sing N N 425 TYR CA HA sing N N 426 TYR C O doub N N 427 TYR C OXT sing N N 428 TYR CB CG sing N N 429 TYR CB HB2 sing N N 430 TYR CB HB3 sing N N 431 TYR CG CD1 doub Y N 432 TYR CG CD2 sing Y N 433 TYR CD1 CE1 sing Y N 434 TYR CD1 HD1 sing N N 435 TYR CD2 CE2 doub Y N 436 TYR CD2 HD2 sing N N 437 TYR CE1 CZ doub Y N 438 TYR CE1 HE1 sing N N 439 TYR CE2 CZ sing Y N 440 TYR CE2 HE2 sing N N 441 TYR CZ OH sing N N 442 TYR OH HH sing N N 443 TYR OXT HXT sing N N 444 VAL N CA sing N N 445 VAL N H sing N N 446 VAL N H2 sing N N 447 VAL CA C sing N N 448 VAL CA CB sing N N 449 VAL CA HA sing N N 450 VAL C O doub N N 451 VAL C OXT sing N N 452 VAL CB CG1 sing N N 453 VAL CB CG2 sing N N 454 VAL CB HB sing N N 455 VAL CG1 HG11 sing N N 456 VAL CG1 HG12 sing N N 457 VAL CG1 HG13 sing N N 458 VAL CG2 HG21 sing N N 459 VAL CG2 HG22 sing N N 460 VAL CG2 HG23 sing N N 461 VAL OXT HXT sing N N 462 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 3JR9 'double helix' 3JR9 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 C DA 1 1_555 D DT 27 1_555 -0.153 -0.049 0.351 9.825 -9.225 -2.659 1 C_DA1:DT27_D C 1 ? D 27 ? 20 1 1 C DA 2 1_555 D DT 26 1_555 0.323 -0.283 -0.005 0.415 -8.875 -0.831 2 C_DA2:DT26_D C 2 ? D 26 ? 20 1 1 C DA 3 1_555 D DT 25 1_555 -0.054 -0.207 0.524 9.668 -8.392 -1.330 3 C_DA3:DT25_D C 3 ? D 25 ? 20 1 1 C DT 4 1_555 D DA 24 1_555 0.410 -0.110 0.053 3.729 -14.558 -0.489 4 C_DT4:DA24_D C 4 ? D 24 ? 20 1 1 C DT 5 1_555 D DA 23 1_555 0.051 0.018 0.020 -0.988 -17.274 0.642 5 C_DT5:DA23_D C 5 ? D 23 ? 20 1 1 C DT 6 1_555 D DA 22 1_555 0.885 -0.261 0.241 -12.703 -18.588 0.119 6 C_DT6:DA22_D C 6 ? D 22 ? 20 1 1 C DG 7 1_555 D DC 21 1_555 -0.392 -0.185 0.016 -7.408 1.640 0.017 7 C_DG7:DC21_D C 7 ? D 21 ? 19 1 1 C DT 8 1_555 D DA 20 1_555 0.731 -0.176 0.232 -2.339 -15.483 8.013 8 C_DT8:DA20_D C 8 ? D 20 ? 20 1 1 C DT 9 1_555 D DA 19 1_555 0.157 -0.210 -0.046 0.128 -8.379 0.794 9 C_DT9:DA19_D C 9 ? D 19 ? 20 1 1 C DT 10 1_555 D DA 18 1_555 0.173 -0.117 -0.281 -0.054 -11.863 -4.829 10 C_DT10:DA18_D C 10 ? D 18 ? 20 1 1 C DA 11 1_555 D DT 17 1_555 -0.254 0.102 0.176 12.261 -15.839 16.414 11 C_DA11:DT17_D C 11 ? D 17 ? ? 1 1 C DA 12 1_555 D DT 16 1_555 -0.180 -0.112 0.444 6.653 -12.189 -0.974 12 C_DA12:DT16_D C 12 ? D 16 ? 20 1 1 C DA 13 1_555 D DT 15 1_555 -0.067 -0.147 0.232 1.621 -15.594 2.207 13 C_DA13:DT15_D C 13 ? D 15 ? 20 1 1 C DT 14 1_555 D DA 14 1_555 -0.295 -0.133 0.107 -0.999 -16.696 2.853 14 C_DT14:DA14_D C 14 ? D 14 ? 20 1 1 C DT 15 1_555 D DA 13 1_555 -0.133 -0.267 -0.023 -4.664 -20.747 -3.937 15 C_DT15:DA13_D C 15 ? D 13 ? 20 1 1 C DT 16 1_555 D DA 12 1_555 0.044 -0.154 0.075 -12.711 -11.781 1.586 16 C_DT16:DA12_D C 16 ? D 12 ? 20 1 1 C DT 17 1_555 D DA 11 1_555 -0.154 0.206 0.156 -11.258 -16.048 19.575 17 C_DT17:DA11_D C 17 ? D 11 ? ? 1 1 C DG 18 1_555 D DC 10 1_555 -0.796 -0.017 0.154 0.826 -7.245 3.824 18 C_DG18:DC10_D C 18 ? D 10 ? 19 1 1 C DA 19 1_555 D DT 9 1_555 -0.219 -0.302 0.569 11.008 -13.929 -1.851 19 C_DA19:DT9_D C 19 ? D 9 ? 20 1 1 C DG 20 1_555 D DC 8 1_555 -0.020 0.039 0.488 8.467 -14.978 6.328 20 C_DG20:DC8_D C 20 ? D 8 ? 19 1 1 C DC 21 1_555 D DG 7 1_555 0.582 -0.188 0.423 3.698 -7.623 5.555 21 C_DC21:DG7_D C 21 ? D 7 ? 19 1 1 C DA 22 1_555 D DT 6 1_555 -0.526 -0.006 0.024 17.269 -15.754 3.217 22 C_DA22:DT6_D C 22 ? D 6 ? 20 1 1 C DA 23 1_555 D DT 5 1_555 -0.223 -0.076 0.090 2.036 -21.298 -3.021 23 C_DA23:DT5_D C 23 ? D 5 ? 20 1 1 C DA 24 1_555 D DT 4 1_555 -0.227 0.054 0.233 1.397 -12.991 1.128 24 C_DA24:DT4_D C 24 ? D 4 ? 20 1 1 C DT 25 1_555 D DA 3 1_555 -0.599 -0.222 0.001 -3.305 -17.849 -0.617 25 C_DT25:DA3_D C 25 ? D 3 ? 20 1 1 C DT 26 1_555 D DA 2 1_555 -0.076 -0.085 0.179 -6.839 -10.603 1.690 26 C_DT26:DA2_D C 26 ? D 2 ? 20 1 1 C DT 27 1_555 D DA 1 1_555 0.882 -0.132 0.402 -8.053 -8.092 -2.151 27 C_DT27:DA1_D C 27 ? D 1 ? 20 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 C DA 1 1_555 D DT 27 1_555 C DA 2 1_555 D DT 26 1_555 -0.293 -0.223 3.373 2.046 -3.208 42.257 0.029 0.620 3.364 -4.439 -2.831 42.420 1 CC_DA1DA2:DT26DT27_DD C 1 ? D 27 ? C 2 ? D 26 ? 1 C DA 2 1_555 D DT 26 1_555 C DA 3 1_555 D DT 25 1_555 0.085 -0.315 2.920 -5.429 -7.521 33.946 0.492 -0.872 2.875 -12.593 9.089 35.155 2 CC_DA2DA3:DT25DT26_DD C 2 ? D 26 ? C 3 ? D 25 ? 1 C DA 3 1_555 D DT 25 1_555 C DT 4 1_555 D DA 24 1_555 0.170 -1.048 3.374 4.032 -3.284 35.704 -1.204 0.325 3.452 -5.322 -6.534 36.069 3 CC_DA3DT4:DA24DT25_DD C 3 ? D 25 ? C 4 ? D 24 ? 1 C DT 4 1_555 D DA 24 1_555 C DT 5 1_555 D DA 23 1_555 0.099 -0.462 3.372 2.199 -2.307 34.792 -0.408 0.179 3.395 -3.848 -3.668 34.933 4 CC_DT4DT5:DA23DA24_DD C 4 ? D 24 ? C 5 ? D 23 ? 1 C DT 5 1_555 D DA 23 1_555 C DT 6 1_555 D DA 22 1_555 -0.093 -0.068 3.512 0.388 0.399 42.379 -0.138 0.170 3.510 0.551 -0.536 42.382 5 CC_DT5DT6:DA22DA23_DD C 5 ? D 23 ? C 6 ? D 22 ? 1 C DT 6 1_555 D DA 22 1_555 C DG 7 1_555 D DC 21 1_555 0.815 0.508 3.225 0.751 0.909 31.597 0.766 -1.359 3.256 1.669 -1.379 31.619 6 CC_DT6DG7:DC21DA22_DD C 6 ? D 22 ? C 7 ? D 21 ? 1 C DG 7 1_555 D DC 21 1_555 C DT 8 1_555 D DA 20 1_555 0.492 -0.277 3.065 -2.475 17.563 31.374 -2.749 -1.121 2.522 29.694 4.185 35.930 7 CC_DG7DT8:DA20DC21_DD C 7 ? D 21 ? C 8 ? D 20 ? 1 C DT 8 1_555 D DA 20 1_555 C DT 9 1_555 D DA 19 1_555 -0.788 -0.561 3.199 2.193 3.143 29.210 -1.749 2.000 3.057 6.199 -4.325 29.455 8 CC_DT8DT9:DA19DA20_DD C 8 ? D 20 ? C 9 ? D 19 ? 1 C DT 9 1_555 D DA 19 1_555 C DT 10 1_555 D DA 18 1_555 -0.276 -0.283 3.345 4.613 5.322 30.490 -1.542 1.393 3.176 9.953 -8.627 31.274 9 CC_DT9DT10:DA18DA19_DD C 9 ? D 19 ? C 10 ? D 18 ? 1 C DT 10 1_555 D DA 18 1_555 C DA 11 1_555 D DT 17 1_555 0.952 0.533 3.164 -1.307 9.545 29.724 -0.801 -2.014 3.137 18.019 2.468 31.213 10 CC_DT10DA11:DT17DA18_DD C 10 ? D 18 ? C 11 ? D 17 ? 1 C DA 11 1_555 D DT 17 1_555 C DA 12 1_555 D DT 16 1_555 -1.046 -0.194 3.308 -4.891 -2.355 37.333 0.015 0.964 3.419 -3.655 7.591 37.712 11 CC_DA11DA12:DT16DT17_DD C 11 ? D 17 ? C 12 ? D 16 ? 1 C DA 12 1_555 D DT 16 1_555 C DA 13 1_555 D DT 15 1_555 0.053 -0.268 3.381 1.959 -6.552 40.406 0.363 0.148 3.381 -9.404 -2.812 40.957 12 CC_DA12DA13:DT15DT16_DD C 12 ? D 16 ? C 13 ? D 15 ? 1 C DA 13 1_555 D DT 15 1_555 C DT 14 1_555 D DA 14 1_555 0.150 -0.805 3.269 0.148 -0.531 31.632 -1.379 -0.247 3.282 -0.974 -0.271 31.636 13 CC_DA13DT14:DA14DT15_DD C 13 ? D 15 ? C 14 ? D 14 ? 1 C DT 14 1_555 D DA 14 1_555 C DT 15 1_555 D DA 13 1_555 -0.319 -0.306 3.277 0.763 -0.691 34.976 -0.405 0.646 3.275 -1.149 -1.269 34.991 14 CC_DT14DT15:DA13DA14_DD C 14 ? D 14 ? C 15 ? D 13 ? 1 C DT 15 1_555 D DA 13 1_555 C DT 16 1_555 D DA 12 1_555 0.189 -0.052 3.497 -0.211 -6.507 41.622 0.648 -0.287 3.466 -9.091 0.295 42.106 15 CC_DT15DT16:DA12DA13_DD C 15 ? D 13 ? C 16 ? D 12 ? 1 C DT 16 1_555 D DA 12 1_555 C DT 17 1_555 D DA 11 1_555 0.956 -0.192 3.145 1.079 0.701 33.400 -0.446 -1.490 3.169 1.219 -1.877 33.424 16 CC_DT16DT17:DA11DA12_DD C 16 ? D 12 ? C 17 ? D 11 ? 1 C DT 17 1_555 D DA 11 1_555 C DG 18 1_555 D DC 10 1_555 -0.350 0.302 3.088 -3.114 7.173 29.879 -0.772 0.075 3.095 13.620 5.913 30.863 17 CC_DT17DG18:DC10DA11_DD C 17 ? D 11 ? C 18 ? D 10 ? 1 C DG 18 1_555 D DC 10 1_555 C DA 19 1_555 D DT 9 1_555 -0.173 -0.239 3.121 -3.525 3.910 34.134 -0.980 -0.229 3.077 6.612 5.961 34.526 18 CC_DG18DA19:DT9DC10_DD C 18 ? D 10 ? C 19 ? D 9 ? 1 C DA 19 1_555 D DT 9 1_555 C DG 20 1_555 D DC 8 1_555 0.740 -0.373 3.372 1.837 3.955 32.222 -1.380 -0.991 3.340 7.086 -3.291 32.508 19 CC_DA19DG20:DC8DT9_DD C 19 ? D 9 ? C 20 ? D 8 ? 1 C DG 20 1_555 D DC 8 1_555 C DC 21 1_555 D DG 7 1_555 -0.530 -0.412 3.340 -0.328 10.286 34.227 -2.170 0.817 3.096 17.007 0.542 35.696 20 CC_DG20DC21:DG7DC8_DD C 20 ? D 8 ? C 21 ? D 7 ? 1 C DC 21 1_555 D DG 7 1_555 C DA 22 1_555 D DT 6 1_555 -0.642 0.544 2.890 4.276 7.252 29.071 -0.265 2.002 2.820 14.079 -8.301 30.241 21 CC_DC21DA22:DT6DG7_DD C 21 ? D 7 ? C 22 ? D 6 ? 1 C DA 22 1_555 D DT 6 1_555 C DA 23 1_555 D DT 5 1_555 -0.275 -0.103 3.591 -0.982 -0.963 39.026 -0.027 0.281 3.598 -1.441 1.469 39.050 22 CC_DA22DA23:DT5DT6_DD C 22 ? D 6 ? C 23 ? D 5 ? 1 C DA 23 1_555 D DT 5 1_555 C DA 24 1_555 D DT 4 1_555 0.195 -0.638 3.223 -3.258 -2.657 36.486 -0.653 -0.751 3.231 -4.227 5.183 36.719 23 CC_DA23DA24:DT4DT5_DD C 23 ? D 5 ? C 24 ? D 4 ? 1 C DA 24 1_555 D DT 4 1_555 C DT 25 1_555 D DA 3 1_555 -0.078 -0.808 3.326 2.150 -2.449 31.635 -1.015 0.546 3.365 -4.478 -3.931 31.798 24 CC_DA24DT25:DA3DT4_DD C 24 ? D 4 ? C 25 ? D 3 ? 1 C DT 25 1_555 D DA 3 1_555 C DT 26 1_555 D DA 2 1_555 -0.063 -0.074 3.341 -0.284 -4.105 40.480 0.359 0.058 3.333 -5.914 0.409 40.680 25 CC_DT25DT26:DA2DA3_DD C 25 ? D 3 ? C 26 ? D 2 ? 1 C DT 26 1_555 D DA 2 1_555 C DT 27 1_555 D DA 1 1_555 0.411 -0.310 3.222 -0.928 -5.906 41.380 0.179 -0.673 3.225 -8.306 1.305 41.791 26 CC_DT26DT27:DA1DA2_DD C 26 ? D 2 ? C 27 ? D 1 ? # _pdbx_entity_nonpoly.entity_id 4 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1ETO _pdbx_initial_refinement_model.details ? #