HEADER OXIDOREDUCTASE 14-SEP-09 3JU3 TITLE CRYSTAL STRUCTURE OF ALPHA CHAIN OF PROBABLE 2-OXOACID FERREDOXIN TITLE 2 OXIDOREDUCTASE FROM THERMOPLASMA ACIDOPHILUM COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROBABLE 2-OXOACID FERREDOXIN OXIDOREDUCTASE, ALPHA CHAIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: SEQUENCE DATABASE RESIDUES 504-618; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOPLASMA ACIDOPHILUM; SOURCE 3 ORGANISM_TAXID: 2303; SOURCE 4 GENE: TA0773; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)MAGIC; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PMCSG19 KEYWDS THERMOPLASMA ACIDOPHILUM, PROBABLE 2-OXOACID FERREDOXIN KEYWDS 2 OXIDOREDUCTASE, STRUCTURAL GENOMICS, PSI-2, PROTEIN STRUCTURE KEYWDS 3 INITIATIVE, MIDWEST CENTER FOR STRUCTURAL GENOMICS, MCSG, KEYWDS 4 OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR C.CHANG,N.MARSHALL,J.BEARDEN,A.JOACHIMIAK,MIDWEST CENTER FOR AUTHOR 2 STRUCTURAL GENOMICS (MCSG) REVDAT 3 01-NOV-17 3JU3 1 REMARK REVDAT 2 13-JUL-11 3JU3 1 VERSN REVDAT 1 22-SEP-09 3JU3 0 JRNL AUTH C.CHANG,N.MARSHALL,J.BEARDEN,A.JOACHIMIAK JRNL TITL CRYSTAL STRUCTURE OF ALPHA CHAIN OF PROBABLE 2-OXOACID JRNL TITL 2 FERREDOXIN OXIDOREDUCTASE FROM THERMOPLASMA ACIDOPHILUM JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0102 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.51 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 8179 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.200 REMARK 3 R VALUE (WORKING SET) : 0.198 REMARK 3 FREE R VALUE : 0.236 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.700 REMARK 3 FREE R VALUE TEST SET COUNT : 407 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 590 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.04 REMARK 3 BIN R VALUE (WORKING SET) : 0.2520 REMARK 3 BIN FREE R VALUE SET COUNT : 31 REMARK 3 BIN FREE R VALUE : 0.2810 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 903 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 4 REMARK 3 SOLVENT ATOMS : 89 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 26.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.59 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.45000 REMARK 3 B22 (A**2) : -1.98000 REMARK 3 B33 (A**2) : 1.53000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.197 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.164 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.130 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.606 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.954 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.942 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 982 ; 0.015 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1336 ; 1.514 ; 1.983 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 129 ; 6.411 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 42 ;41.541 ;27.381 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 189 ;15.509 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 1 ; 8.283 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 155 ; 0.107 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 737 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 619 ; 1.033 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1011 ; 1.772 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 363 ; 2.146 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 325 ; 3.374 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 504 A 522 REMARK 3 ORIGIN FOR THE GROUP (A): 14.3766 18.4620 17.9853 REMARK 3 T TENSOR REMARK 3 T11: 0.0979 T22: 0.0621 REMARK 3 T33: 0.0153 T12: 0.0104 REMARK 3 T13: -0.0032 T23: -0.0318 REMARK 3 L TENSOR REMARK 3 L11: 3.4992 L22: 10.8666 REMARK 3 L33: 0.9433 L12: 2.1212 REMARK 3 L13: -0.0957 L23: -3.2901 REMARK 3 S TENSOR REMARK 3 S11: 0.1166 S12: 0.2819 S13: -0.0742 REMARK 3 S21: -0.7115 S22: -0.0865 S23: 0.0418 REMARK 3 S31: 0.2783 S32: 0.0800 S33: -0.0301 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 523 A 538 REMARK 3 ORIGIN FOR THE GROUP (A): 17.1735 11.8102 27.5393 REMARK 3 T TENSOR REMARK 3 T11: 0.0724 T22: 0.0681 REMARK 3 T33: 0.0583 T12: -0.0202 REMARK 3 T13: -0.0615 T23: 0.0260 REMARK 3 L TENSOR REMARK 3 L11: 4.3628 L22: 17.0277 REMARK 3 L33: 2.1243 L12: 7.5611 REMARK 3 L13: 1.1883 L23: 1.9016 REMARK 3 S TENSOR REMARK 3 S11: 0.4260 S12: -0.2779 S13: -0.3136 REMARK 3 S21: 0.6150 S22: -0.3436 S23: -0.5252 REMARK 3 S31: 0.2297 S32: 0.1895 S33: -0.0824 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 539 A 548 REMARK 3 ORIGIN FOR THE GROUP (A): 14.7997 17.5816 20.4325 REMARK 3 T TENSOR REMARK 3 T11: 0.1048 T22: 0.0712 REMARK 3 T33: 0.0611 T12: 0.0146 REMARK 3 T13: 0.0017 T23: -0.0368 REMARK 3 L TENSOR REMARK 3 L11: 3.2868 L22: 15.4643 REMARK 3 L33: 2.6305 L12: 5.8725 REMARK 3 L13: -1.5981 L23: -6.2166 REMARK 3 S TENSOR REMARK 3 S11: 0.2388 S12: 0.0986 S13: -0.0487 REMARK 3 S21: 0.3208 S22: -0.1932 S23: -0.0344 REMARK 3 S31: 0.0082 S32: 0.2275 S33: -0.0456 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 549 A 565 REMARK 3 ORIGIN FOR THE GROUP (A): 32.9900 38.4720 13.1956 REMARK 3 T TENSOR REMARK 3 T11: 0.0811 T22: 0.0210 REMARK 3 T33: 0.0538 T12: -0.0005 REMARK 3 T13: 0.0509 T23: -0.0057 REMARK 3 L TENSOR REMARK 3 L11: 3.6514 L22: 6.4392 REMARK 3 L33: 3.1165 L12: 2.2286 REMARK 3 L13: 1.2939 L23: 1.2236 REMARK 3 S TENSOR REMARK 3 S11: -0.1738 S12: 0.2270 S13: -0.0398 REMARK 3 S21: -0.6804 S22: 0.1560 S23: -0.3531 REMARK 3 S31: -0.0685 S32: -0.0144 S33: 0.0178 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 566 A 576 REMARK 3 ORIGIN FOR THE GROUP (A): 30.9286 40.9268 26.9172 REMARK 3 T TENSOR REMARK 3 T11: 0.1001 T22: 0.0288 REMARK 3 T33: 0.0476 T12: -0.0332 REMARK 3 T13: -0.0693 T23: 0.0267 REMARK 3 L TENSOR REMARK 3 L11: 11.3099 L22: 7.9235 REMARK 3 L33: 1.9743 L12: 6.1203 REMARK 3 L13: -3.1826 L23: -0.9661 REMARK 3 S TENSOR REMARK 3 S11: 0.4219 S12: -0.4132 S13: -0.1410 REMARK 3 S21: 0.6851 S22: -0.3738 S23: -0.3194 REMARK 3 S31: -0.0621 S32: 0.0911 S33: -0.0481 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 578 A 587 REMARK 3 ORIGIN FOR THE GROUP (A): 8.8237 32.6997 20.5982 REMARK 3 T TENSOR REMARK 3 T11: 0.1740 T22: 0.1869 REMARK 3 T33: 0.4421 T12: 0.0197 REMARK 3 T13: 0.0860 T23: -0.1008 REMARK 3 L TENSOR REMARK 3 L11: 0.1089 L22: 8.0899 REMARK 3 L33: 15.1059 L12: -0.9196 REMARK 3 L13: 1.5760 L23: -4.5568 REMARK 3 S TENSOR REMARK 3 S11: 0.0200 S12: -0.1416 S13: 0.3892 REMARK 3 S21: 0.4419 S22: -0.0669 S23: 0.6699 REMARK 3 S31: -0.7042 S32: 0.1281 S33: 0.0468 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 588 A 591 REMARK 3 ORIGIN FOR THE GROUP (A): 3.0041 27.9379 19.9693 REMARK 3 T TENSOR REMARK 3 T11: 0.1923 T22: 0.1989 REMARK 3 T33: 0.5042 T12: -0.0233 REMARK 3 T13: 0.1426 T23: -0.0287 REMARK 3 L TENSOR REMARK 3 L11: 29.9898 L22: 4.2953 REMARK 3 L33: 10.3345 L12: -16.3402 REMARK 3 L13: 4.4614 L23: -9.3248 REMARK 3 S TENSOR REMARK 3 S11: -0.3460 S12: 0.0411 S13: -0.1248 REMARK 3 S21: 0.5973 S22: 0.5730 S23: 0.7004 REMARK 3 S31: -0.7794 S32: -1.0914 S33: -0.2271 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 592 A 598 REMARK 3 ORIGIN FOR THE GROUP (A): 6.8812 24.5542 31.5699 REMARK 3 T TENSOR REMARK 3 T11: 0.2574 T22: 0.0642 REMARK 3 T33: 0.1672 T12: 0.0045 REMARK 3 T13: 0.1939 T23: -0.0587 REMARK 3 L TENSOR REMARK 3 L11: 12.7664 L22: 14.3786 REMARK 3 L33: 25.6528 L12: 5.2382 REMARK 3 L13: 7.4164 L23: 3.5202 REMARK 3 S TENSOR REMARK 3 S11: 0.2160 S12: -0.4527 S13: 0.5647 REMARK 3 S21: 1.0244 S22: -0.1166 S23: 1.2407 REMARK 3 S31: -0.8260 S32: -0.9432 S33: -0.0994 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 602 A 616 REMARK 3 ORIGIN FOR THE GROUP (A): 10.2654 15.4306 34.4042 REMARK 3 T TENSOR REMARK 3 T11: 0.5718 T22: 0.4107 REMARK 3 T33: 0.1115 T12: 0.1202 REMARK 3 T13: 0.0027 T23: -0.1284 REMARK 3 L TENSOR REMARK 3 L11: 14.7060 L22: 7.7623 REMARK 3 L33: 9.0461 L12: 1.3980 REMARK 3 L13: 8.7294 L23: -0.6531 REMARK 3 S TENSOR REMARK 3 S11: -0.6599 S12: -0.1552 S13: -0.5847 REMARK 3 S21: 1.8749 S22: 1.0603 S23: -0.3591 REMARK 3 S31: -0.4104 S32: 0.5482 S33: -0.4004 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3JU3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-SEP-09. REMARK 100 THE DEPOSITION ID IS D_1000055160. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-JUN-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97940 REMARK 200 MONOCHROMATOR : SI(111) DOUBLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 8590 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 6.900 REMARK 200 R MERGE (I) : 0.07200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 41.6400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.92 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.40 REMARK 200 R MERGE FOR SHELL (I) : 0.46300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.330 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: HKL-3000, SHELXD, MLPHARE, DM, RESOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 37.50 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.97 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.1M DL-MALIC ACID PH 7.0, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 22.21450 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 32.76400 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 36.09250 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 22.21450 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 32.76400 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 36.09250 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 22.21450 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 32.76400 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 36.09250 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 22.21450 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 32.76400 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 36.09250 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 14920 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22190 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -95.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 44.42900 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 65.52800 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 44.42900 REMARK 350 BIOMT2 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 72.18500 REMARK 350 BIOMT1 4 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 65.52800 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 72.18500 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 501 REMARK 465 ASN A 502 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 597 CG CD CE NZ REMARK 470 TYR A 598 CG CD1 CD2 CE1 CE2 CZ OH REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 17 O HOH A 38 1.87 REMARK 500 OH TYR A 546 O HOH A 32 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O MSE A 549 O MSE A 549 2665 1.72 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 701 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: APC36729.1 RELATED DB: TARGETDB DBREF 3JU3 A 504 618 UNP Q9HK35 Q9HK35_THEAC 504 618 SEQADV 3JU3 SER A 501 UNP Q9HK35 EXPRESSION TAG SEQADV 3JU3 ASN A 502 UNP Q9HK35 EXPRESSION TAG SEQADV 3JU3 ALA A 503 UNP Q9HK35 EXPRESSION TAG SEQRES 1 A 118 SER ASN ALA GLU LYS ALA VAL LEU ILE GLY GLU LYS GLU SEQRES 2 A 118 ALA ASP ILE THR PHE VAL THR TRP GLY SER GLN LYS GLY SEQRES 3 A 118 PRO ILE LEU ASP VAL ILE GLU ASP LEU LYS GLU GLU GLY SEQRES 4 A 118 ILE SER ALA ASN LEU LEU TYR LEU LYS MSE PHE SER PRO SEQRES 5 A 118 PHE PRO THR GLU PHE VAL LYS ASN VAL LEU SER SER ALA SEQRES 6 A 118 ASN LEU VAL ILE ASP VAL GLU SER ASN TYR THR ALA GLN SEQRES 7 A 118 ALA ALA GLN MSE ILE LYS LEU TYR THR GLY ILE ASP ILE SEQRES 8 A 118 LYS ASN LYS ILE LEU LYS TYR ASN GLY ARG HIS MSE THR SEQRES 9 A 118 GLU ASP GLU ILE LEU LYS SER ALA LYS GLU ILE LEU ASN SEQRES 10 A 118 LYS MODRES 3JU3 MSE A 549 MET SELENOMETHIONINE MODRES 3JU3 MSE A 582 MET SELENOMETHIONINE MODRES 3JU3 MSE A 603 MET SELENOMETHIONINE HET MSE A 549 8 HET MSE A 582 8 HET MSE A 603 8 HET EDO A 701 4 HETNAM MSE SELENOMETHIONINE HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 1 MSE 3(C5 H11 N O2 SE) FORMUL 2 EDO C2 H6 O2 FORMUL 3 HOH *89(H2 O) HELIX 1 1 GLN A 524 GLU A 538 1 15 HELIX 2 2 PRO A 554 SER A 563 1 10 HELIX 3 3 ALA A 579 GLY A 588 1 10 HELIX 4 4 THR A 604 LYS A 618 1 15 SHEET 1 A 3 ALA A 506 ILE A 509 0 SHEET 2 A 3 ALA A 542 LEU A 547 -1 O LEU A 544 N ILE A 509 SHEET 3 A 3 ILE A 516 TRP A 521 1 N PHE A 518 O LEU A 545 LINK C LYS A 548 N MSE A 549 1555 1555 1.32 LINK C MSE A 549 N PHE A 550 1555 1555 1.31 LINK C GLN A 581 N MSE A 582 1555 1555 1.31 LINK C MSE A 582 N ILE A 583 1555 1555 1.33 LINK C HIS A 602 N MSE A 603 1555 1555 1.33 LINK C MSE A 603 N THR A 604 1555 1555 1.34 CISPEP 1 SER A 551 PRO A 552 0 -23.26 CISPEP 2 SER A 551 PRO A 552 0 -5.82 SITE 1 AC1 5 SER A 523 GLN A 524 ARG A 601 HIS A 602 SITE 2 AC1 5 THR A 604 CRYST1 44.429 65.528 72.185 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022508 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015261 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013853 0.00000