data_3JUI # _entry.id 3JUI # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.351 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3JUI pdb_00003jui 10.2210/pdb3jui/pdb RCSB RCSB055175 ? ? WWPDB D_1000055175 ? ? # _pdbx_database_status.entry_id 3JUI _pdbx_database_status.status_code REL _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site PDBJ _pdbx_database_status.recvd_initial_deposition_date 2009-09-15 _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Wei, J.' 1 'Xu, H.' 2 'Zhang, C.' 3 'Wang, M.' 4 'Gao, F.' 5 'Gong, W.' 6 # _citation.id primary _citation.title 'Crystal Structure of the C-terminal Domain of Human Translation Initiation Factor eIF2B epsilon Subunit' _citation.journal_abbrev 'To be published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Wei, J.' 1 ? primary 'Xu, H.' 2 ? primary 'Zhang, C.' 3 ? primary 'Wang, M.' 4 ? primary 'Gao, F.' 5 ? primary 'Gong, W.' 6 ? # _cell.length_a 46.537 _cell.length_b 66.082 _cell.length_c 136.128 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 90.000 _cell.entry_id 3JUI _cell.pdbx_unique_axis ? _cell.Z_PDB 8 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'C 2 2 21' _symmetry.entry_id 3JUI _symmetry.Int_Tables_number 20 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Translation initiation factor eIF-2B subunit epsilon' 21384.492 1 ? E678G 'C-terminal Domain' ? 2 non-polymer syn GLYCEROL 92.094 1 ? ? ? ? 3 water nat water 18.015 94 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'eIF-2B GDP-GTP exchange factor subunit epsilon' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;GHHHHHH(MSE)DDIKVFQNEVLGTLQRGKEENISCDNLVLEINSLKYAYNISLKEV(MSE)QVLSHVVLEFPLQQ (MSE)DSPLDSSRYCALLLPLLKAWSPVFRNYIKRAADHLEALAAIEDFFLEHEALGIS(MSE)AKVL(MSE)AFYQLEI LAGETILSWFSQRDTTDKGQQLRKNQQLQRFIQWLKEAEEESSEDD ; _entity_poly.pdbx_seq_one_letter_code_can ;GHHHHHHMDDIKVFQNEVLGTLQRGKEENISCDNLVLEINSLKYAYNISLKEVMQVLSHVVLEFPLQQMDSPLDSSRYCA LLLPLLKAWSPVFRNYIKRAADHLEALAAIEDFFLEHEALGISMAKVLMAFYQLEILAGETILSWFSQRDTTDKGQQLRK NQQLQRFIQWLKEAEEESSEDD ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 HIS n 1 3 HIS n 1 4 HIS n 1 5 HIS n 1 6 HIS n 1 7 HIS n 1 8 MSE n 1 9 ASP n 1 10 ASP n 1 11 ILE n 1 12 LYS n 1 13 VAL n 1 14 PHE n 1 15 GLN n 1 16 ASN n 1 17 GLU n 1 18 VAL n 1 19 LEU n 1 20 GLY n 1 21 THR n 1 22 LEU n 1 23 GLN n 1 24 ARG n 1 25 GLY n 1 26 LYS n 1 27 GLU n 1 28 GLU n 1 29 ASN n 1 30 ILE n 1 31 SER n 1 32 CYS n 1 33 ASP n 1 34 ASN n 1 35 LEU n 1 36 VAL n 1 37 LEU n 1 38 GLU n 1 39 ILE n 1 40 ASN n 1 41 SER n 1 42 LEU n 1 43 LYS n 1 44 TYR n 1 45 ALA n 1 46 TYR n 1 47 ASN n 1 48 ILE n 1 49 SER n 1 50 LEU n 1 51 LYS n 1 52 GLU n 1 53 VAL n 1 54 MSE n 1 55 GLN n 1 56 VAL n 1 57 LEU n 1 58 SER n 1 59 HIS n 1 60 VAL n 1 61 VAL n 1 62 LEU n 1 63 GLU n 1 64 PHE n 1 65 PRO n 1 66 LEU n 1 67 GLN n 1 68 GLN n 1 69 MSE n 1 70 ASP n 1 71 SER n 1 72 PRO n 1 73 LEU n 1 74 ASP n 1 75 SER n 1 76 SER n 1 77 ARG n 1 78 TYR n 1 79 CYS n 1 80 ALA n 1 81 LEU n 1 82 LEU n 1 83 LEU n 1 84 PRO n 1 85 LEU n 1 86 LEU n 1 87 LYS n 1 88 ALA n 1 89 TRP n 1 90 SER n 1 91 PRO n 1 92 VAL n 1 93 PHE n 1 94 ARG n 1 95 ASN n 1 96 TYR n 1 97 ILE n 1 98 LYS n 1 99 ARG n 1 100 ALA n 1 101 ALA n 1 102 ASP n 1 103 HIS n 1 104 LEU n 1 105 GLU n 1 106 ALA n 1 107 LEU n 1 108 ALA n 1 109 ALA n 1 110 ILE n 1 111 GLU n 1 112 ASP n 1 113 PHE n 1 114 PHE n 1 115 LEU n 1 116 GLU n 1 117 HIS n 1 118 GLU n 1 119 ALA n 1 120 LEU n 1 121 GLY n 1 122 ILE n 1 123 SER n 1 124 MSE n 1 125 ALA n 1 126 LYS n 1 127 VAL n 1 128 LEU n 1 129 MSE n 1 130 ALA n 1 131 PHE n 1 132 TYR n 1 133 GLN n 1 134 LEU n 1 135 GLU n 1 136 ILE n 1 137 LEU n 1 138 ALA n 1 139 GLY n 1 140 GLU n 1 141 THR n 1 142 ILE n 1 143 LEU n 1 144 SER n 1 145 TRP n 1 146 PHE n 1 147 SER n 1 148 GLN n 1 149 ARG n 1 150 ASP n 1 151 THR n 1 152 THR n 1 153 ASP n 1 154 LYS n 1 155 GLY n 1 156 GLN n 1 157 GLN n 1 158 LEU n 1 159 ARG n 1 160 LYS n 1 161 ASN n 1 162 GLN n 1 163 GLN n 1 164 LEU n 1 165 GLN n 1 166 ARG n 1 167 PHE n 1 168 ILE n 1 169 GLN n 1 170 TRP n 1 171 LEU n 1 172 LYS n 1 173 GLU n 1 174 ALA n 1 175 GLU n 1 176 GLU n 1 177 GLU n 1 178 SER n 1 179 SER n 1 180 GLU n 1 181 ASP n 1 182 ASP n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'EIF2B5, EIF2BE' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain b834 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name p28 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code EI2BE_HUMAN _struct_ref.pdbx_db_accession Q13144 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;DDIKVFQNEVLGTLQRGKEENISCDNLVLEINSLKYAYNISLKEVMQVLSHVVLEFPLQQMDSPLDSSRYCALLLPLLKA WSPVFRNYIKRAADHLEALAAIEDFFLEHEALGISMAKVLMAFYQLEILAEETILSWFSQRDTTDKGQQLRKNQQLQRFI QWLKEAEEESSEDD ; _struct_ref.pdbx_align_begin 548 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3JUI _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 9 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 182 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q13144 _struct_ref_seq.db_align_beg 548 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 721 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 548 _struct_ref_seq.pdbx_auth_seq_align_end 721 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3JUI GLY A 1 ? UNP Q13144 ? ? 'expression tag' 540 1 1 3JUI HIS A 2 ? UNP Q13144 ? ? 'expression tag' 541 2 1 3JUI HIS A 3 ? UNP Q13144 ? ? 'expression tag' 542 3 1 3JUI HIS A 4 ? UNP Q13144 ? ? 'expression tag' 543 4 1 3JUI HIS A 5 ? UNP Q13144 ? ? 'expression tag' 544 5 1 3JUI HIS A 6 ? UNP Q13144 ? ? 'expression tag' 545 6 1 3JUI HIS A 7 ? UNP Q13144 ? ? 'expression tag' 546 7 1 3JUI MSE A 8 ? UNP Q13144 ? ? 'expression tag' 547 8 1 3JUI GLY A 139 ? UNP Q13144 GLU 678 'engineered mutation' 678 9 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GOL non-polymer . GLYCEROL 'GLYCERIN; PROPANE-1,2,3-TRIOL' 'C3 H8 O3' 92.094 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.entry_id 3JUI _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.pdbx_mosaicity 0.731 _exptl_crystal.pdbx_mosaicity_esd ? _exptl_crystal.density_Matthews 2.45 _exptl_crystal.density_diffrn ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_percent_sol 49.73 _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION' _exptl_crystal_grow.pH 7.7 _exptl_crystal_grow.temp 289 _exptl_crystal_grow.pdbx_details 'PEG8000, Calcium acetate, Sodium Cocadylate, pH 7.7, vapor diffusion, temperature 289K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 210' _diffrn_detector.pdbx_collection_date 2008-11-13 _diffrn_detector.details mirrors # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.monochromator 'Si 111 CHANNEL' _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.9796 1.0 2 0.9794 1.0 3 0.9600 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'NSLS BEAMLINE X12C' _diffrn_source.pdbx_wavelength_list '0.9796, 0.9794, 0.9600' _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site NSLS _diffrn_source.pdbx_synchrotron_beamline X12C # _reflns.entry_id 3JUI _reflns.d_resolution_high 2.000 _reflns.d_resolution_low 50.000 _reflns.number_obs 13260 _reflns.pdbx_Rmerge_I_obs 0.070 _reflns.pdbx_netI_over_sigmaI 13.200 _reflns.pdbx_chi_squared 1.202 _reflns.pdbx_redundancy 7.200 _reflns.percent_possible_obs 90.600 _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.number_all ? _reflns.pdbx_Rsym_value ? _reflns.B_iso_Wilson_estimate ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 2.00 2.07 ? ? ? 0.313 ? ? 0.868 7.40 ? 1196 84.10 1 1 2.07 2.15 ? ? ? 0.253 ? ? 0.874 7.30 ? 1201 83.10 2 1 2.15 2.25 ? ? ? 0.194 ? ? 0.948 7.10 ? 1208 83.60 3 1 2.25 2.37 ? ? ? 0.176 ? ? 0.966 6.80 ? 1251 86.00 4 1 2.37 2.52 ? ? ? 0.133 ? ? 0.949 6.70 ? 1269 89.10 5 1 2.52 2.71 ? ? ? 0.102 ? ? 1.009 6.70 ? 1323 90.70 6 1 2.71 2.99 ? ? ? 0.080 ? ? 1.134 6.70 ? 1345 92.80 7 1 2.99 3.42 ? ? ? 0.059 ? ? 1.352 6.80 ? 1413 96.30 8 1 3.42 4.31 ? ? ? 0.046 ? ? 1.517 7.80 ? 1483 99.90 9 1 4.31 50.00 ? ? ? 0.048 ? ? 1.859 8.70 ? 1571 99.30 10 1 # _refine.entry_id 3JUI _refine.ls_d_res_high 2.000 _refine.ls_d_res_low 29.160 _refine.pdbx_ls_sigma_F 0.00 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 90.210 _refine.ls_number_reflns_obs 13149 _refine.ls_number_reflns_all ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS U VALUES: REFINED INDIVIDUALLY' _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.214 _refine.ls_R_factor_R_work 0.211 _refine.ls_wR_factor_R_work 0.217 _refine.ls_R_factor_R_free 0.279 _refine.ls_wR_factor_R_free 0.281 _refine.ls_percent_reflns_R_free 5.000 _refine.ls_number_reflns_R_free 661 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 24.420 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] -0.010 _refine.aniso_B[2][2] -0.010 _refine.aniso_B[3][3] 0.010 _refine.aniso_B[1][2] 0.000 _refine.aniso_B[1][3] 0.000 _refine.aniso_B[2][3] 0.000 _refine.correlation_coeff_Fo_to_Fc 0.930 _refine.correlation_coeff_Fo_to_Fc_free 0.888 _refine.overall_SU_R_Cruickshank_DPI 0.219 _refine.overall_SU_R_free 0.206 _refine.pdbx_overall_ESU_R 0.219 _refine.pdbx_overall_ESU_R_Free 0.206 _refine.overall_SU_ML 0.130 _refine.overall_SU_B 4.527 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.400 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD WITH PHASES' _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set 0.885 _refine.B_iso_max 64.35 _refine.B_iso_min 4.57 _refine.occupancy_max 1.00 _refine.occupancy_min 0.00 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_phase_error ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1422 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 6 _refine_hist.number_atoms_solvent 94 _refine_hist.number_atoms_total 1522 _refine_hist.d_res_high 2.000 _refine_hist.d_res_low 29.160 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 1481 0.022 0.022 ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 2001 1.761 1.950 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 180 5.870 5.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 77 36.704 24.935 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 275 16.909 15.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 7 20.742 15.000 ? 'X-RAY DIFFRACTION' ? r_chiral_restr 218 0.146 0.200 ? 'X-RAY DIFFRACTION' ? r_gen_planes_refined 1115 0.009 0.020 ? 'X-RAY DIFFRACTION' ? r_mcbond_it 877 1.100 1.500 ? 'X-RAY DIFFRACTION' ? r_mcangle_it 1409 1.812 2.000 ? 'X-RAY DIFFRACTION' ? r_scbond_it 604 3.190 3.000 ? 'X-RAY DIFFRACTION' ? r_scangle_it 588 4.448 4.500 ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.d_res_high 2.000 _refine_ls_shell.d_res_low 2.052 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 83.250 _refine_ls_shell.number_reflns_R_work 826 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.212 _refine_ls_shell.R_factor_R_free 0.299 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 39 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 865 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3JUI _struct.title 'Crystal Structure of the C-terminal Domain of Human Translation Initiation Factor eIF2B epsilon Subunit' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3JUI _struct_keywords.text ;HEAT repeat, guanine nucleotide exchange factor, translation initiation factor, Disease mutation, Initiation factor, Leukodystrophy, Phosphoprotein, Protein biosynthesis, TRANSLATION ; _struct_keywords.pdbx_keywords TRANSLATION # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLY A 1 ? ASN A 29 ? GLY A 540 ASN A 568 1 ? 29 HELX_P HELX_P2 2 SER A 31 ? TYR A 46 ? SER A 570 TYR A 585 1 ? 16 HELX_P HELX_P3 3 SER A 49 ? PHE A 64 ? SER A 588 PHE A 603 1 ? 16 HELX_P HELX_P4 4 PRO A 65 ? MSE A 69 ? PRO A 604 MSE A 608 5 ? 5 HELX_P HELX_P5 5 ASP A 74 ? ILE A 97 ? ASP A 613 ILE A 636 1 ? 24 HELX_P HELX_P6 6 ARG A 99 ? HIS A 117 ? ARG A 638 HIS A 656 1 ? 19 HELX_P HELX_P7 7 GLU A 118 ? ILE A 122 ? GLU A 657 ILE A 661 5 ? 5 HELX_P HELX_P8 8 SER A 123 ? LEU A 134 ? SER A 662 LEU A 673 1 ? 12 HELX_P HELX_P9 9 ALA A 138 ? SER A 147 ? ALA A 677 SER A 686 1 ? 10 HELX_P HELX_P10 10 ASP A 153 ? ARG A 159 ? ASP A 692 ARG A 698 1 ? 7 HELX_P HELX_P11 11 ASN A 161 ? GLU A 176 ? ASN A 700 GLU A 715 1 ? 16 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A HIS 7 C ? ? ? 1_555 A MSE 8 N ? ? A HIS 546 A MSE 547 1_555 ? ? ? ? ? ? ? 1.351 ? ? covale2 covale both ? A MSE 8 C ? ? ? 1_555 A ASP 9 N ? ? A MSE 547 A ASP 548 1_555 ? ? ? ? ? ? ? 1.356 ? ? covale3 covale both ? A VAL 53 C ? ? ? 1_555 A MSE 54 N ? ? A VAL 592 A MSE 593 1_555 ? ? ? ? ? ? ? 1.345 ? ? covale4 covale both ? A MSE 54 C ? ? ? 1_555 A GLN 55 N ? ? A MSE 593 A GLN 594 1_555 ? ? ? ? ? ? ? 1.336 ? ? covale5 covale both ? A GLN 68 C ? ? ? 1_555 A MSE 69 N ? ? A GLN 607 A MSE 608 1_555 ? ? ? ? ? ? ? 1.332 ? ? covale6 covale both ? A MSE 69 C ? ? ? 1_555 A ASP 70 N ? ? A MSE 608 A ASP 609 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale7 covale both ? A SER 123 C ? ? ? 1_555 A MSE 124 N ? ? A SER 662 A MSE 663 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale8 covale both ? A MSE 124 C ? ? ? 1_555 A ALA 125 N ? ? A MSE 663 A ALA 664 1_555 ? ? ? ? ? ? ? 1.349 ? ? covale9 covale both ? A LEU 128 C ? ? ? 1_555 A MSE 129 N ? ? A LEU 667 A MSE 668 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale10 covale both ? A MSE 129 C ? ? ? 1_555 A ALA 130 N ? ? A MSE 668 A ALA 669 1_555 ? ? ? ? ? ? ? 1.340 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id SER _struct_mon_prot_cis.label_seq_id 71 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id SER _struct_mon_prot_cis.auth_seq_id 610 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 72 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 611 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle -7.48 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id A _struct_site.pdbx_auth_comp_id GOL _struct_site.pdbx_auth_seq_id 1 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 7 _struct_site.details 'BINDING SITE FOR RESIDUE GOL A 1' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 7 HOH C . ? HOH A 9 . ? 1_555 ? 2 AC1 7 HOH C . ? HOH A 19 . ? 1_555 ? 3 AC1 7 HOH C . ? HOH A 51 . ? 8_466 ? 4 AC1 7 HOH C . ? HOH A 63 . ? 1_555 ? 5 AC1 7 ARG A 24 ? ARG A 563 . ? 8_466 ? 6 AC1 7 GLU A 28 ? GLU A 567 . ? 8_466 ? 7 AC1 7 ASP A 102 ? ASP A 641 . ? 1_555 ? # _atom_sites.entry_id 3JUI _atom_sites.fract_transf_matrix[1][1] 0.021488 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.015133 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.007346 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 540 540 GLY GLY A . n A 1 2 HIS 2 541 541 HIS HIS A . n A 1 3 HIS 3 542 542 HIS HIS A . n A 1 4 HIS 4 543 543 HIS HIS A . n A 1 5 HIS 5 544 544 HIS HIS A . n A 1 6 HIS 6 545 545 HIS HIS A . n A 1 7 HIS 7 546 546 HIS HIS A . n A 1 8 MSE 8 547 547 MSE MSE A . n A 1 9 ASP 9 548 548 ASP ASP A . n A 1 10 ASP 10 549 549 ASP ASP A . n A 1 11 ILE 11 550 550 ILE ILE A . n A 1 12 LYS 12 551 551 LYS LYS A . n A 1 13 VAL 13 552 552 VAL VAL A . n A 1 14 PHE 14 553 553 PHE PHE A . n A 1 15 GLN 15 554 554 GLN GLN A . n A 1 16 ASN 16 555 555 ASN ASN A . n A 1 17 GLU 17 556 556 GLU GLU A . n A 1 18 VAL 18 557 557 VAL VAL A . n A 1 19 LEU 19 558 558 LEU LEU A . n A 1 20 GLY 20 559 559 GLY GLY A . n A 1 21 THR 21 560 560 THR THR A . n A 1 22 LEU 22 561 561 LEU LEU A . n A 1 23 GLN 23 562 562 GLN GLN A . n A 1 24 ARG 24 563 563 ARG ARG A . n A 1 25 GLY 25 564 564 GLY GLY A . n A 1 26 LYS 26 565 565 LYS LYS A . n A 1 27 GLU 27 566 566 GLU GLU A . n A 1 28 GLU 28 567 567 GLU GLU A . n A 1 29 ASN 29 568 568 ASN ASN A . n A 1 30 ILE 30 569 569 ILE ILE A . n A 1 31 SER 31 570 570 SER SER A . n A 1 32 CYS 32 571 571 CYS CYS A . n A 1 33 ASP 33 572 572 ASP ASP A . n A 1 34 ASN 34 573 573 ASN ASN A . n A 1 35 LEU 35 574 574 LEU LEU A . n A 1 36 VAL 36 575 575 VAL VAL A . n A 1 37 LEU 37 576 576 LEU LEU A . n A 1 38 GLU 38 577 577 GLU GLU A . n A 1 39 ILE 39 578 578 ILE ILE A . n A 1 40 ASN 40 579 579 ASN ASN A . n A 1 41 SER 41 580 580 SER SER A . n A 1 42 LEU 42 581 581 LEU LEU A . n A 1 43 LYS 43 582 582 LYS LYS A . n A 1 44 TYR 44 583 583 TYR TYR A . n A 1 45 ALA 45 584 584 ALA ALA A . n A 1 46 TYR 46 585 585 TYR TYR A . n A 1 47 ASN 47 586 586 ASN ASN A . n A 1 48 ILE 48 587 587 ILE ILE A . n A 1 49 SER 49 588 588 SER SER A . n A 1 50 LEU 50 589 589 LEU LEU A . n A 1 51 LYS 51 590 590 LYS LYS A . n A 1 52 GLU 52 591 591 GLU GLU A . n A 1 53 VAL 53 592 592 VAL VAL A . n A 1 54 MSE 54 593 593 MSE MSE A . n A 1 55 GLN 55 594 594 GLN GLN A . n A 1 56 VAL 56 595 595 VAL VAL A . n A 1 57 LEU 57 596 596 LEU LEU A . n A 1 58 SER 58 597 597 SER SER A . n A 1 59 HIS 59 598 598 HIS HIS A . n A 1 60 VAL 60 599 599 VAL VAL A . n A 1 61 VAL 61 600 600 VAL VAL A . n A 1 62 LEU 62 601 601 LEU LEU A . n A 1 63 GLU 63 602 602 GLU GLU A . n A 1 64 PHE 64 603 603 PHE PHE A . n A 1 65 PRO 65 604 604 PRO PRO A . n A 1 66 LEU 66 605 605 LEU LEU A . n A 1 67 GLN 67 606 606 GLN GLN A . n A 1 68 GLN 68 607 607 GLN GLN A . n A 1 69 MSE 69 608 608 MSE MSE A . n A 1 70 ASP 70 609 609 ASP ASP A . n A 1 71 SER 71 610 610 SER SER A . n A 1 72 PRO 72 611 611 PRO PRO A . n A 1 73 LEU 73 612 612 LEU LEU A . n A 1 74 ASP 74 613 613 ASP ASP A . n A 1 75 SER 75 614 614 SER SER A . n A 1 76 SER 76 615 615 SER SER A . n A 1 77 ARG 77 616 616 ARG ARG A . n A 1 78 TYR 78 617 617 TYR TYR A . n A 1 79 CYS 79 618 618 CYS CYS A . n A 1 80 ALA 80 619 619 ALA ALA A . n A 1 81 LEU 81 620 620 LEU LEU A . n A 1 82 LEU 82 621 621 LEU LEU A . n A 1 83 LEU 83 622 622 LEU LEU A . n A 1 84 PRO 84 623 623 PRO PRO A . n A 1 85 LEU 85 624 624 LEU LEU A . n A 1 86 LEU 86 625 625 LEU LEU A . n A 1 87 LYS 87 626 626 LYS LYS A . n A 1 88 ALA 88 627 627 ALA ALA A . n A 1 89 TRP 89 628 628 TRP TRP A . n A 1 90 SER 90 629 629 SER SER A . n A 1 91 PRO 91 630 630 PRO PRO A . n A 1 92 VAL 92 631 631 VAL VAL A . n A 1 93 PHE 93 632 632 PHE PHE A . n A 1 94 ARG 94 633 633 ARG ARG A . n A 1 95 ASN 95 634 634 ASN ASN A . n A 1 96 TYR 96 635 635 TYR TYR A . n A 1 97 ILE 97 636 636 ILE ILE A . n A 1 98 LYS 98 637 637 LYS LYS A . n A 1 99 ARG 99 638 638 ARG ARG A . n A 1 100 ALA 100 639 639 ALA ALA A . n A 1 101 ALA 101 640 640 ALA ALA A . n A 1 102 ASP 102 641 641 ASP ASP A . n A 1 103 HIS 103 642 642 HIS HIS A . n A 1 104 LEU 104 643 643 LEU LEU A . n A 1 105 GLU 105 644 644 GLU GLU A . n A 1 106 ALA 106 645 645 ALA ALA A . n A 1 107 LEU 107 646 646 LEU LEU A . n A 1 108 ALA 108 647 647 ALA ALA A . n A 1 109 ALA 109 648 648 ALA ALA A . n A 1 110 ILE 110 649 649 ILE ILE A . n A 1 111 GLU 111 650 650 GLU GLU A . n A 1 112 ASP 112 651 651 ASP ASP A . n A 1 113 PHE 113 652 652 PHE PHE A . n A 1 114 PHE 114 653 653 PHE PHE A . n A 1 115 LEU 115 654 654 LEU LEU A . n A 1 116 GLU 116 655 655 GLU GLU A . n A 1 117 HIS 117 656 656 HIS HIS A . n A 1 118 GLU 118 657 657 GLU GLU A . n A 1 119 ALA 119 658 658 ALA ALA A . n A 1 120 LEU 120 659 659 LEU LEU A . n A 1 121 GLY 121 660 660 GLY GLY A . n A 1 122 ILE 122 661 661 ILE ILE A . n A 1 123 SER 123 662 662 SER SER A . n A 1 124 MSE 124 663 663 MSE MSE A . n A 1 125 ALA 125 664 664 ALA ALA A . n A 1 126 LYS 126 665 665 LYS LYS A . n A 1 127 VAL 127 666 666 VAL VAL A . n A 1 128 LEU 128 667 667 LEU LEU A . n A 1 129 MSE 129 668 668 MSE MSE A . n A 1 130 ALA 130 669 669 ALA ALA A . n A 1 131 PHE 131 670 670 PHE PHE A . n A 1 132 TYR 132 671 671 TYR TYR A . n A 1 133 GLN 133 672 672 GLN GLN A . n A 1 134 LEU 134 673 673 LEU LEU A . n A 1 135 GLU 135 674 674 GLU GLU A . n A 1 136 ILE 136 675 675 ILE ILE A . n A 1 137 LEU 137 676 676 LEU LEU A . n A 1 138 ALA 138 677 677 ALA ALA A . n A 1 139 GLY 139 678 678 GLY GLY A . n A 1 140 GLU 140 679 679 GLU GLU A . n A 1 141 THR 141 680 680 THR THR A . n A 1 142 ILE 142 681 681 ILE ILE A . n A 1 143 LEU 143 682 682 LEU LEU A . n A 1 144 SER 144 683 683 SER SER A . n A 1 145 TRP 145 684 684 TRP TRP A . n A 1 146 PHE 146 685 685 PHE PHE A . n A 1 147 SER 147 686 686 SER SER A . n A 1 148 GLN 148 687 687 GLN GLN A . n A 1 149 ARG 149 688 688 ARG ARG A . n A 1 150 ASP 150 689 689 ASP ASP A . n A 1 151 THR 151 690 ? ? ? A . n A 1 152 THR 152 691 ? ? ? A . n A 1 153 ASP 153 692 692 ASP ASP A . n A 1 154 LYS 154 693 693 LYS LYS A . n A 1 155 GLY 155 694 694 GLY GLY A . n A 1 156 GLN 156 695 695 GLN GLN A . n A 1 157 GLN 157 696 696 GLN GLN A . n A 1 158 LEU 158 697 697 LEU LEU A . n A 1 159 ARG 159 698 698 ARG ARG A . n A 1 160 LYS 160 699 699 LYS LYS A . n A 1 161 ASN 161 700 700 ASN ASN A . n A 1 162 GLN 162 701 701 GLN GLN A . n A 1 163 GLN 163 702 702 GLN GLN A . n A 1 164 LEU 164 703 703 LEU LEU A . n A 1 165 GLN 165 704 704 GLN GLN A . n A 1 166 ARG 166 705 705 ARG ARG A . n A 1 167 PHE 167 706 706 PHE PHE A . n A 1 168 ILE 168 707 707 ILE ILE A . n A 1 169 GLN 169 708 708 GLN GLN A . n A 1 170 TRP 170 709 709 TRP TRP A . n A 1 171 LEU 171 710 710 LEU LEU A . n A 1 172 LYS 172 711 711 LYS LYS A . n A 1 173 GLU 173 712 712 GLU GLU A . n A 1 174 ALA 174 713 713 ALA ALA A . n A 1 175 GLU 175 714 714 GLU GLU A . n A 1 176 GLU 176 715 715 GLU GLY A . n A 1 177 GLU 177 716 ? ? ? A . n A 1 178 SER 178 717 ? ? ? A . n A 1 179 SER 179 718 ? ? ? A . n A 1 180 GLU 180 719 ? ? ? A . n A 1 181 ASP 181 720 ? ? ? A . n A 1 182 ASP 182 721 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL 1 1 1 GOL GOL A . C 3 HOH 1 2 2 HOH HOH A . C 3 HOH 2 3 3 HOH HOH A . C 3 HOH 3 4 4 HOH HOH A . C 3 HOH 4 5 5 HOH HOH A . C 3 HOH 5 6 6 HOH HOH A . C 3 HOH 6 7 7 HOH HOH A . C 3 HOH 7 8 8 HOH HOH A . C 3 HOH 8 9 9 HOH HOH A . C 3 HOH 9 10 10 HOH HOH A . C 3 HOH 10 11 11 HOH HOH A . C 3 HOH 11 12 12 HOH HOH A . C 3 HOH 12 13 13 HOH HOH A . C 3 HOH 13 14 14 HOH HOH A . C 3 HOH 14 15 15 HOH HOH A . C 3 HOH 15 16 16 HOH HOH A . C 3 HOH 16 17 17 HOH HOH A . C 3 HOH 17 18 18 HOH HOH A . C 3 HOH 18 19 19 HOH HOH A . C 3 HOH 19 20 20 HOH HOH A . C 3 HOH 20 21 21 HOH HOH A . C 3 HOH 21 22 22 HOH HOH A . C 3 HOH 22 23 23 HOH HOH A . C 3 HOH 23 24 24 HOH HOH A . C 3 HOH 24 25 25 HOH HOH A . C 3 HOH 25 26 26 HOH HOH A . C 3 HOH 26 27 27 HOH HOH A . C 3 HOH 27 28 28 HOH HOH A . C 3 HOH 28 29 29 HOH HOH A . C 3 HOH 29 30 30 HOH HOH A . C 3 HOH 30 31 31 HOH HOH A . C 3 HOH 31 32 32 HOH HOH A . C 3 HOH 32 33 33 HOH HOH A . C 3 HOH 33 34 34 HOH HOH A . C 3 HOH 34 35 35 HOH HOH A . C 3 HOH 35 36 36 HOH HOH A . C 3 HOH 36 37 37 HOH HOH A . C 3 HOH 37 38 38 HOH HOH A . C 3 HOH 38 39 39 HOH HOH A . C 3 HOH 39 40 40 HOH HOH A . C 3 HOH 40 41 41 HOH HOH A . C 3 HOH 41 42 42 HOH HOH A . C 3 HOH 42 43 43 HOH HOH A . C 3 HOH 43 44 44 HOH HOH A . C 3 HOH 44 45 45 HOH HOH A . C 3 HOH 45 46 46 HOH HOH A . C 3 HOH 46 47 47 HOH HOH A . C 3 HOH 47 48 48 HOH HOH A . C 3 HOH 48 49 49 HOH HOH A . C 3 HOH 49 50 50 HOH HOH A . C 3 HOH 50 51 51 HOH HOH A . C 3 HOH 51 52 52 HOH HOH A . C 3 HOH 52 53 53 HOH HOH A . C 3 HOH 53 54 54 HOH HOH A . C 3 HOH 54 55 55 HOH HOH A . C 3 HOH 55 56 56 HOH HOH A . C 3 HOH 56 57 57 HOH HOH A . C 3 HOH 57 58 58 HOH HOH A . C 3 HOH 58 59 59 HOH HOH A . C 3 HOH 59 60 60 HOH HOH A . C 3 HOH 60 61 61 HOH HOH A . C 3 HOH 61 62 62 HOH HOH A . C 3 HOH 62 63 63 HOH HOH A . C 3 HOH 63 64 64 HOH HOH A . C 3 HOH 64 65 65 HOH HOH A . C 3 HOH 65 66 66 HOH HOH A . C 3 HOH 66 67 67 HOH HOH A . C 3 HOH 67 68 68 HOH HOH A . C 3 HOH 68 69 69 HOH HOH A . C 3 HOH 69 70 70 HOH HOH A . C 3 HOH 70 71 71 HOH HOH A . C 3 HOH 71 72 72 HOH HOH A . C 3 HOH 72 73 73 HOH HOH A . C 3 HOH 73 74 74 HOH HOH A . C 3 HOH 74 75 75 HOH HOH A . C 3 HOH 75 76 76 HOH HOH A . C 3 HOH 76 77 77 HOH HOH A . C 3 HOH 77 78 78 HOH HOH A . C 3 HOH 78 79 79 HOH HOH A . C 3 HOH 79 80 80 HOH HOH A . C 3 HOH 80 81 81 HOH HOH A . C 3 HOH 81 82 82 HOH HOH A . C 3 HOH 82 83 83 HOH HOH A . C 3 HOH 83 84 84 HOH HOH A . C 3 HOH 84 85 85 HOH HOH A . C 3 HOH 85 86 86 HOH HOH A . C 3 HOH 86 87 87 HOH HOH A . C 3 HOH 87 88 88 HOH HOH A . C 3 HOH 88 89 89 HOH HOH A . C 3 HOH 89 90 90 HOH HOH A . C 3 HOH 90 91 91 HOH HOH A . C 3 HOH 91 92 92 HOH HOH A . C 3 HOH 92 93 93 HOH HOH A . C 3 HOH 93 94 94 HOH HOH A . C 3 HOH 94 722 1 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 8 A MSE 547 ? MET SELENOMETHIONINE 2 A MSE 54 A MSE 593 ? MET SELENOMETHIONINE 3 A MSE 69 A MSE 608 ? MET SELENOMETHIONINE 4 A MSE 124 A MSE 663 ? MET SELENOMETHIONINE 5 A MSE 129 A MSE 668 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2009-10-06 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2017-11-01 4 'Structure model' 1 3 2021-11-10 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Non-polymer description' 2 2 'Structure model' 'Version format compliance' 3 3 'Structure model' Advisory 4 3 'Structure model' 'Refinement description' 5 4 'Structure model' Advisory 6 4 'Structure model' 'Database references' 7 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' pdbx_unobs_or_zero_occ_atoms 2 3 'Structure model' software 3 4 'Structure model' database_2 4 4 'Structure model' pdbx_unobs_or_zero_occ_atoms 5 4 'Structure model' struct_conn 6 4 'Structure model' struct_ref_seq_dif 7 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 4 4 'Structure model' '_struct_ref_seq_dif.details' 5 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 6 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 7 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # _diffrn_reflns.diffrn_id 1 _diffrn_reflns.pdbx_d_res_high 2.300 _diffrn_reflns.pdbx_d_res_low 50.000 _diffrn_reflns.pdbx_number_obs 9770 _diffrn_reflns.pdbx_Rmerge_I_obs 0.072 _diffrn_reflns.pdbx_Rsym_value ? _diffrn_reflns.pdbx_chi_squared 1.32 _diffrn_reflns.av_sigmaI_over_netI 24.08 _diffrn_reflns.pdbx_redundancy 7.10 _diffrn_reflns.pdbx_percent_possible_obs 99.60 _diffrn_reflns.number 69282 _diffrn_reflns.pdbx_observed_criterion ? _diffrn_reflns.limit_h_max ? _diffrn_reflns.limit_h_min ? _diffrn_reflns.limit_k_max ? _diffrn_reflns.limit_k_min ? _diffrn_reflns.limit_l_max ? _diffrn_reflns.limit_l_min ? # loop_ _pdbx_diffrn_reflns_shell.diffrn_id _pdbx_diffrn_reflns_shell.d_res_high _pdbx_diffrn_reflns_shell.d_res_low _pdbx_diffrn_reflns_shell.number_obs _pdbx_diffrn_reflns_shell.rejects _pdbx_diffrn_reflns_shell.Rmerge_I_obs _pdbx_diffrn_reflns_shell.Rsym_value _pdbx_diffrn_reflns_shell.chi_squared _pdbx_diffrn_reflns_shell.redundancy _pdbx_diffrn_reflns_shell.percent_possible_obs 1 4.95 50.00 ? ? 0.060 ? 2.214 6.30 97.20 1 3.93 4.95 ? ? 0.053 ? 1.885 6.90 99.50 1 3.44 3.93 ? ? 0.056 ? 1.478 7.10 100.00 1 3.12 3.44 ? ? 0.069 ? 1.373 7.20 100.00 1 2.90 3.12 ? ? 0.082 ? 1.285 7.30 100.00 1 2.73 2.90 ? ? 0.094 ? 1.160 7.30 100.00 1 2.59 2.73 ? ? 0.110 ? 1.011 7.30 100.00 1 2.48 2.59 ? ? 0.127 ? 1.044 7.30 100.00 1 2.38 2.48 ? ? 0.155 ? 0.944 7.40 100.00 1 2.30 2.38 ? ? 0.170 ? 0.875 6.80 100.00 # loop_ _pdbx_phasing_MAD_set_site.id _pdbx_phasing_MAD_set_site.atom_type_symbol _pdbx_phasing_MAD_set_site.occupancy _pdbx_phasing_MAD_set_site.fract_x _pdbx_phasing_MAD_set_site.fract_y _pdbx_phasing_MAD_set_site.fract_z _pdbx_phasing_MAD_set_site.b_iso 1 Se 0.718 0.866 0.110 0.099 24.597 2 Se 0.573 0.115 0.455 0.086 23.103 3 Se 0.643 0.123 0.159 0.174 34.598 4 Se 0.362 0.361 0.272 0.077 3.065 5 Se 0.775 0.752 0.483 0.149 47.113 # _pdbx_phasing_dm.entry_id 3JUI _pdbx_phasing_dm.fom_acentric 0.900 _pdbx_phasing_dm.fom_centric 0.830 _pdbx_phasing_dm.fom 0.890 _pdbx_phasing_dm.reflns_acentric 3663 _pdbx_phasing_dm.reflns_centric 713 _pdbx_phasing_dm.reflns 4376 # loop_ _pdbx_phasing_dm_shell.d_res_high _pdbx_phasing_dm_shell.d_res_low _pdbx_phasing_dm_shell.delta_phi_final _pdbx_phasing_dm_shell.delta_phi_initial _pdbx_phasing_dm_shell.fom_acentric _pdbx_phasing_dm_shell.fom_centric _pdbx_phasing_dm_shell.fom _pdbx_phasing_dm_shell.reflns_acentric _pdbx_phasing_dm_shell.reflns_centric _pdbx_phasing_dm_shell.reflns 8.600 14.970 ? ? 0.940 0.960 0.950 107 50 157 5.400 8.600 ? ? 0.940 0.860 0.920 469 151 620 4.300 5.400 ? ? 0.950 0.860 0.930 609 131 740 3.800 4.300 ? ? 0.930 0.860 0.920 628 116 744 3.200 3.800 ? ? 0.890 0.810 0.880 1133 181 1314 3.000 3.200 ? ? 0.820 0.650 0.800 717 84 801 # _phasing.method MAD # _phasing_MAD_clust.expt_id 1 _phasing_MAD_clust.id '3 wavelength' _phasing_MAD_clust.number_set ? # _phasing_MAD_expt.id 1 _phasing_MAD_expt.mean_fom ? # loop_ _phasing_MAD_set.expt_id _phasing_MAD_set.clust_id _phasing_MAD_set.set_id _phasing_MAD_set.wavelength _phasing_MAD_set.pdbx_f_prime_refined _phasing_MAD_set.pdbx_f_double_prime_refined 1 '3 wavelength' 1 0.9782 -8.43 2.73 1 '3 wavelength' 2 0.9779 -7.56 5.48 1 '3 wavelength' 3 0.8856 -2.98 3.93 # loop_ _phasing_set.id _phasing_set.pdbx_d_res_high _phasing_set.pdbx_d_res_low 1 . . 2 . . 3 . . # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 DENZO . ? package 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data reduction' http://www.hkl-xray.com/ ? ? 2 SCALEPACK . ? package 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data scaling' http://www.hkl-xray.com/ ? ? 3 SOLVE 2.10 8-Jun-2005 program 'Tom Terwilliger' terwilliger@LANL.gov phasing http://www.solve.lanl.gov/ ? ? 4 RESOLVE 2.10 09-Aug-2005 program 'Thomas C. Terwilliger' terwilliger@lanl.gov phasing http://www.solve.lanl.gov/ ? ? 5 REFMAC 5.5.0072 ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 6 PDB_EXTRACT 3.005 'June 11, 2008' package PDB help@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 7 HKL-2000 . ? ? ? ? 'data collection' ? ? ? 8 HKL-2000 . ? ? ? ? 'data reduction' ? ? ? 9 HKL-2000 . ? ? ? ? 'data scaling' ? ? ? # _pdbx_validate_rmsd_bond.id 1 _pdbx_validate_rmsd_bond.PDB_model_num 1 _pdbx_validate_rmsd_bond.auth_atom_id_1 CB _pdbx_validate_rmsd_bond.auth_asym_id_1 A _pdbx_validate_rmsd_bond.auth_comp_id_1 CYS _pdbx_validate_rmsd_bond.auth_seq_id_1 618 _pdbx_validate_rmsd_bond.PDB_ins_code_1 ? _pdbx_validate_rmsd_bond.label_alt_id_1 ? _pdbx_validate_rmsd_bond.auth_atom_id_2 SG _pdbx_validate_rmsd_bond.auth_asym_id_2 A _pdbx_validate_rmsd_bond.auth_comp_id_2 CYS _pdbx_validate_rmsd_bond.auth_seq_id_2 618 _pdbx_validate_rmsd_bond.PDB_ins_code_2 ? _pdbx_validate_rmsd_bond.label_alt_id_2 ? _pdbx_validate_rmsd_bond.bond_value 1.689 _pdbx_validate_rmsd_bond.bond_target_value 1.812 _pdbx_validate_rmsd_bond.bond_deviation -0.123 _pdbx_validate_rmsd_bond.bond_standard_deviation 0.016 _pdbx_validate_rmsd_bond.linker_flag N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 NE A ARG 563 ? ? CZ A ARG 563 ? ? NH1 A ARG 563 ? ? 125.76 120.30 5.46 0.50 N 2 1 NE A ARG 563 ? ? CZ A ARG 563 ? ? NH2 A ARG 563 ? ? 112.09 120.30 -8.21 0.50 N # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id GLU _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 714 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi -76.03 _pdbx_validate_torsion.psi -70.71 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 0 A LEU 612 ? CA B A LEU 73 CA 2 1 Y 0 A LEU 612 ? CB B A LEU 73 CB 3 1 Y 0 A LEU 612 ? CG B A LEU 73 CG 4 1 Y 0 A LEU 612 ? CD1 B A LEU 73 CD1 5 1 Y 0 A LEU 612 ? CD2 B A LEU 73 CD2 6 1 Y 1 A GLU 715 ? CB ? A GLU 176 CB 7 1 Y 1 A GLU 715 ? CG ? A GLU 176 CG 8 1 Y 1 A GLU 715 ? CD ? A GLU 176 CD 9 1 Y 1 A GLU 715 ? OE1 ? A GLU 176 OE1 10 1 Y 1 A GLU 715 ? OE2 ? A GLU 176 OE2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A THR 690 ? A THR 151 2 1 Y 1 A THR 691 ? A THR 152 3 1 Y 1 A GLU 716 ? A GLU 177 4 1 Y 1 A SER 717 ? A SER 178 5 1 Y 1 A SER 718 ? A SER 179 6 1 Y 1 A GLU 719 ? A GLU 180 7 1 Y 1 A ASP 720 ? A ASP 181 8 1 Y 1 A ASP 721 ? A ASP 182 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 GLYCEROL GOL 3 water HOH #