HEADER BIOSYNTHETIC PROTEIN 15-SEP-09 3JUM TITLE CRYSTAL STRUCTURE OF PHZA/B FROM BURKHOLDERIA CEPACIA R18194 IN TITLE 2 COMPLEX WITH 5-BROMO-2-((1S,3R)-3-CARBOXYCYCLOHEXYLAMINO)BENZOIC ACID COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHENAZINE BIOSYNTHESIS PROTEIN A/B; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BURKHOLDERIA SP.; SOURCE 3 ORGANISM_COMMON: BURKHOLDERIA CEPACIA (STRAIN ATCC 17760 / NCIB 9086 SOURCE 4 / R18194); SOURCE 5 ORGANISM_TAXID: 269483; SOURCE 6 STRAIN: 383; SOURCE 7 GENE: BCEP18194_B1568; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 10 EXPRESSION_SYSTEM_STRAIN: ROSETTA2(DE3) PLYSS; SOURCE 11 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 12 EXPRESSION_SYSTEM_PLASMID: PET15B KEYWDS CHIRALITY, DRUG DESIGN, PHENAZINE BIOSYNTHESIS, MEDICINAL CHEMISTRY, KEYWDS 2 INHIBITOR, BIOSYNTHETIC PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.MENTEL,R.BREINBAUER,W.BLANKENFELDT REVDAT 4 21-FEB-24 3JUM 1 REMARK SEQADV REVDAT 3 13-JUL-11 3JUM 1 VERSN REVDAT 2 17-NOV-09 3JUM 1 JRNL REVDAT 1 29-SEP-09 3JUM 0 JRNL AUTH M.MENTEL,W.BLANKENFELDT,R.BREINBAUER JRNL TITL THE ACTIVE SITE OF AN ENZYME CAN HOST BOTH ENANTIOMERS OF A JRNL TITL 2 RACEMIC LIGAND SIMULTANEOUSLY JRNL REF ANGEW.CHEM.INT.ED.ENGL. V. 48 9084 2009 JRNL REFN ISSN 1433-7851 JRNL PMID 19876985 JRNL DOI 10.1002/ANIE.200902997 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH E.G.AHUJA,P.JANNING,A.GRAEBSCH,R.BREINBAUER,W.HILLER, REMARK 1 AUTH 2 B.COSTISELLA,L.S.THOMASHOW,D.V.MAVRODI,W.BLANKENFELDT REMARK 1 TITL PHZA/B CATALYZES THE FORMATION OF THE TRICYCLE IN PHENAZINE REMARK 1 TITL 2 BIOSYNTHESIS REMARK 1 REF J.AM.CHEM.SOC. V. 130 17053 2008 REMARK 1 REFN ISSN 0002-7863 REMARK 1 PMID 19053436 REMARK 1 DOI 10.1021/JA806325K REMARK 2 REMARK 2 RESOLUTION. 1.45 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.45 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.69 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 69623 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.140 REMARK 3 R VALUE (WORKING SET) : 0.138 REMARK 3 FREE R VALUE : 0.185 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3557 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.45 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.49 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4781 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.41 REMARK 3 BIN R VALUE (WORKING SET) : 0.1530 REMARK 3 BIN FREE R VALUE SET COUNT : 263 REMARK 3 BIN FREE R VALUE : 0.2580 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2619 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 40 REMARK 3 SOLVENT ATOMS : 379 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 26.15 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 15.92 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.058 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.059 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.036 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.003 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.977 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.962 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2817 ; 0.027 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 2010 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3827 ; 2.112 ; 1.925 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4763 ; 1.079 ; 3.002 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 333 ; 6.624 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 168 ;34.995 ;22.917 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 458 ;13.867 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 34 ;18.615 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 369 ; 0.510 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3234 ; 0.013 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 659 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 581 ; 0.266 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 2240 ; 0.230 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1350 ; 0.195 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1607 ; 0.093 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 283 ; 0.229 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 19 ; 0.271 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 50 ; 0.387 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 17 ; 0.390 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2036 ; 3.046 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 653 ; 1.105 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2591 ; 3.487 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1429 ; 5.038 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1229 ; 6.753 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 6140 ; 2.677 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 379 ;14.042 ; 3.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 4738 ; 4.909 ; 3.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : NULL -1 NULL -1 REMARK 3 ORIGIN FOR THE GROUP (A): 36.6551 5.8980 79.3670 REMARK 3 T TENSOR REMARK 3 T11: -0.0426 T22: -0.0244 REMARK 3 T33: -0.0357 T12: 0.0068 REMARK 3 T13: -0.0007 T23: -0.0038 REMARK 3 L TENSOR REMARK 3 L11: 0.4855 L22: 0.6484 REMARK 3 L33: 0.8169 L12: -0.0421 REMARK 3 L13: 0.1847 L23: -0.2801 REMARK 3 S TENSOR REMARK 3 S11: 0.0007 S12: 0.0133 S13: 0.0156 REMARK 3 S21: -0.0357 S22: 0.0286 S23: -0.0324 REMARK 3 S31: 0.0286 S32: -0.0283 S33: -0.0293 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3JUM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-SEP-09. REMARK 100 THE DEPOSITION ID IS D_1000055179. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-OCT-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.1 - 6.7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98407 REMARK 200 MONOCHROMATOR : SI(111) MONOCHROMATOR REMARK 200 OPTICS : SI(111) REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 69627 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.450 REMARK 200 RESOLUTION RANGE LOW (A) : 19.690 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.05900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.9400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.45 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.55 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.4 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.37700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.32 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.25 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 16-20% (W/V) PEG3350, 0.2 M NH4OAC, REMARK 280 0.1 M BIS-TRIS PH 6.1-6.7; COMPLEX PREPARED BY OVERNIGHT SOAKING REMARK 280 IN MOTHER LIQUOR CONTAINING 5 MM 5-BROMO-2-((1S,3R)-3- REMARK 280 CARBOXYCYCLOHEXYLAMINO)BENZOIC ACID, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 284K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 106.90667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 53.45333 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 53.45333 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 106.90667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4330 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14740 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -17.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -19 REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 465 LEU A -6 REMARK 465 VAL A -5 REMARK 465 PRO A -4 REMARK 465 ARG A -3 REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 ASP A 3 REMARK 465 VAL A 4 REMARK 465 GLU A 5 REMARK 465 SER A 6 REMARK 465 LEU A 7 REMARK 465 GLU A 8 REMARK 465 MET B -19 REMARK 465 GLY B -18 REMARK 465 SER B -17 REMARK 465 SER B -16 REMARK 465 HIS B -15 REMARK 465 HIS B -14 REMARK 465 HIS B -13 REMARK 465 HIS B -12 REMARK 465 HIS B -11 REMARK 465 HIS B -10 REMARK 465 SER B -9 REMARK 465 SER B -8 REMARK 465 GLY B -7 REMARK 465 LEU B -6 REMARK 465 VAL B -5 REMARK 465 PRO B -4 REMARK 465 ARG B -3 REMARK 465 GLY B -2 REMARK 465 SER B -1 REMARK 465 HIS B 0 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 ASP B 3 REMARK 465 VAL B 4 REMARK 465 GLU B 5 REMARK 465 SER B 6 REMARK 465 LEU B 7 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP B 48 O HOH B 326 1.86 REMARK 500 CB GLN A 79 O HOH A 368 1.92 REMARK 500 O HOH B 220 O HOH B 330 1.93 REMARK 500 O HOH B 328 O HOH B 361 1.99 REMARK 500 OE2 GLU B 68 O HOH B 237 2.03 REMARK 500 O HOH B 341 O HOH B 360 2.04 REMARK 500 CG HIS B 123 O HOH B 357 2.08 REMARK 500 OE1 GLU B 28 O HOH B 283 2.09 REMARK 500 O HOH A 266 O HOH A 333 2.16 REMARK 500 O HOH B 256 O HOH B 310 2.16 REMARK 500 O HOH A 304 O HOH A 348 2.18 REMARK 500 NE2 GLN B 29 O HOH B 290 2.19 REMARK 500 CG2 THR B 87 O HOH B 174 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 347 O HOH B 213 4546 1.99 REMARK 500 O HOH A 368 O HOH B 353 5556 2.06 REMARK 500 O HOH A 347 O HOH B 289 4546 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 107 CB GLU A 107 CG -0.154 REMARK 500 GLY A 162 N GLY A 162 CA 0.140 REMARK 500 ARG B 34 CB ARG B 34 CG -0.179 REMARK 500 ARG B 105 CG ARG B 105 CD -0.173 REMARK 500 GLU B 157 CG GLU B 157 CD 0.090 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 41 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 ARG A 41 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 ASP A 48 CB - CG - OD2 ANGL. DEV. = 10.1 DEGREES REMARK 500 LEU A 125 CB - CG - CD2 ANGL. DEV. = 10.9 DEGREES REMARK 500 PHE A 148 CB - CG - CD2 ANGL. DEV. = -4.9 DEGREES REMARK 500 ARG A 149 CG - CD - NE ANGL. DEV. = -13.2 DEGREES REMARK 500 ARG A 149 NE - CZ - NH2 ANGL. DEV. = -4.1 DEGREES REMARK 500 GLY A 162 C - N - CA ANGL. DEV. = -19.8 DEGREES REMARK 500 ARG B 14 NE - CZ - NH2 ANGL. DEV. = -3.8 DEGREES REMARK 500 ARG B 24 NE - CZ - NH2 ANGL. DEV. = -4.1 DEGREES REMARK 500 ARG B 34 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 ARG B 67 NE - CZ - NH1 ANGL. DEV. = 5.1 DEGREES REMARK 500 ARG B 67 NE - CZ - NH2 ANGL. DEV. = -5.1 DEGREES REMARK 500 ARG B 105 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 ARG B 129 NE - CZ - NH2 ANGL. DEV. = -3.7 DEGREES REMARK 500 ARG B 149 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 ARG B 159 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 ARG B 159 NE - CZ - NH2 ANGL. DEV. = -5.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 160 78.08 -109.81 REMARK 500 ARG B 160 74.19 -114.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY A 162 LEU A 163 -143.48 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 HIS B 123 0.10 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AOD A 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AOD B 500 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3JUN RELATED DB: PDB REMARK 900 RELATED ID: 3JUO RELATED DB: PDB REMARK 900 RELATED ID: 3JUP RELATED DB: PDB REMARK 900 RELATED ID: 3JUQ RELATED DB: PDB REMARK 900 RELATED ID: 3BO4 RELATED DB: PDB REMARK 900 RELATED ID: 3CNM RELATED DB: PDB REMARK 900 RELATED ID: 3DZL RELATED DB: PDB REMARK 900 RELATED ID: 3B4P RELATED DB: PDB REMARK 900 RELATED ID: 3EX9 RELATED DB: PDB DBREF 3JUM A 1 165 UNP Q396C9 Q396C9_BURS3 1 165 DBREF 3JUM B 1 165 UNP Q396C9 Q396C9_BURS3 1 165 SEQADV 3JUM MET A -19 UNP Q396C9 EXPRESSION TAG SEQADV 3JUM GLY A -18 UNP Q396C9 EXPRESSION TAG SEQADV 3JUM SER A -17 UNP Q396C9 EXPRESSION TAG SEQADV 3JUM SER A -16 UNP Q396C9 EXPRESSION TAG SEQADV 3JUM HIS A -15 UNP Q396C9 EXPRESSION TAG SEQADV 3JUM HIS A -14 UNP Q396C9 EXPRESSION TAG SEQADV 3JUM HIS A -13 UNP Q396C9 EXPRESSION TAG SEQADV 3JUM HIS A -12 UNP Q396C9 EXPRESSION TAG SEQADV 3JUM HIS A -11 UNP Q396C9 EXPRESSION TAG SEQADV 3JUM HIS A -10 UNP Q396C9 EXPRESSION TAG SEQADV 3JUM SER A -9 UNP Q396C9 EXPRESSION TAG SEQADV 3JUM SER A -8 UNP Q396C9 EXPRESSION TAG SEQADV 3JUM GLY A -7 UNP Q396C9 EXPRESSION TAG SEQADV 3JUM LEU A -6 UNP Q396C9 EXPRESSION TAG SEQADV 3JUM VAL A -5 UNP Q396C9 EXPRESSION TAG SEQADV 3JUM PRO A -4 UNP Q396C9 EXPRESSION TAG SEQADV 3JUM ARG A -3 UNP Q396C9 EXPRESSION TAG SEQADV 3JUM GLY A -2 UNP Q396C9 EXPRESSION TAG SEQADV 3JUM SER A -1 UNP Q396C9 EXPRESSION TAG SEQADV 3JUM HIS A 0 UNP Q396C9 EXPRESSION TAG SEQADV 3JUM MET B -19 UNP Q396C9 EXPRESSION TAG SEQADV 3JUM GLY B -18 UNP Q396C9 EXPRESSION TAG SEQADV 3JUM SER B -17 UNP Q396C9 EXPRESSION TAG SEQADV 3JUM SER B -16 UNP Q396C9 EXPRESSION TAG SEQADV 3JUM HIS B -15 UNP Q396C9 EXPRESSION TAG SEQADV 3JUM HIS B -14 UNP Q396C9 EXPRESSION TAG SEQADV 3JUM HIS B -13 UNP Q396C9 EXPRESSION TAG SEQADV 3JUM HIS B -12 UNP Q396C9 EXPRESSION TAG SEQADV 3JUM HIS B -11 UNP Q396C9 EXPRESSION TAG SEQADV 3JUM HIS B -10 UNP Q396C9 EXPRESSION TAG SEQADV 3JUM SER B -9 UNP Q396C9 EXPRESSION TAG SEQADV 3JUM SER B -8 UNP Q396C9 EXPRESSION TAG SEQADV 3JUM GLY B -7 UNP Q396C9 EXPRESSION TAG SEQADV 3JUM LEU B -6 UNP Q396C9 EXPRESSION TAG SEQADV 3JUM VAL B -5 UNP Q396C9 EXPRESSION TAG SEQADV 3JUM PRO B -4 UNP Q396C9 EXPRESSION TAG SEQADV 3JUM ARG B -3 UNP Q396C9 EXPRESSION TAG SEQADV 3JUM GLY B -2 UNP Q396C9 EXPRESSION TAG SEQADV 3JUM SER B -1 UNP Q396C9 EXPRESSION TAG SEQADV 3JUM HIS B 0 UNP Q396C9 EXPRESSION TAG SEQRES 1 A 185 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 185 LEU VAL PRO ARG GLY SER HIS MET SER ASP VAL GLU SER SEQRES 3 A 185 LEU GLU ASN THR SER GLU ASN ARG ALA GLN VAL ALA ALA SEQRES 4 A 185 ARG GLN HIS ASN ARG LYS ILE VAL GLU GLN TYR MET HIS SEQRES 5 A 185 THR ARG GLY GLU ALA ARG LEU LYS ARG HIS LEU LEU PHE SEQRES 6 A 185 THR GLU ASP GLY VAL GLY GLY LEU TRP THR THR ASP SER SEQRES 7 A 185 GLY GLN PRO ILE ALA ILE ARG GLY ARG GLU LYS LEU GLY SEQRES 8 A 185 GLU HIS ALA VAL TRP SER LEU GLN CYS PHE PRO ASP TRP SEQRES 9 A 185 VAL TRP THR ASP ILE GLN ILE PHE GLU THR GLN ASP PRO SEQRES 10 A 185 ASN TRP PHE TRP VAL GLU CYS ARG GLY GLU GLY ALA ILE SEQRES 11 A 185 VAL PHE PRO GLY TYR PRO ARG GLY GLN TYR ARG ASN HIS SEQRES 12 A 185 PHE LEU HIS SER PHE ARG PHE GLU ASN GLY LEU ILE LYS SEQRES 13 A 185 GLU GLN ARG GLU PHE MET ASN PRO CYS GLU GLN PHE ARG SEQRES 14 A 185 SER LEU GLY ILE GLU VAL PRO GLU VAL ARG ARG ASP GLY SEQRES 15 A 185 LEU PRO SER SEQRES 1 B 185 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 185 LEU VAL PRO ARG GLY SER HIS MET SER ASP VAL GLU SER SEQRES 3 B 185 LEU GLU ASN THR SER GLU ASN ARG ALA GLN VAL ALA ALA SEQRES 4 B 185 ARG GLN HIS ASN ARG LYS ILE VAL GLU GLN TYR MET HIS SEQRES 5 B 185 THR ARG GLY GLU ALA ARG LEU LYS ARG HIS LEU LEU PHE SEQRES 6 B 185 THR GLU ASP GLY VAL GLY GLY LEU TRP THR THR ASP SER SEQRES 7 B 185 GLY GLN PRO ILE ALA ILE ARG GLY ARG GLU LYS LEU GLY SEQRES 8 B 185 GLU HIS ALA VAL TRP SER LEU GLN CYS PHE PRO ASP TRP SEQRES 9 B 185 VAL TRP THR ASP ILE GLN ILE PHE GLU THR GLN ASP PRO SEQRES 10 B 185 ASN TRP PHE TRP VAL GLU CYS ARG GLY GLU GLY ALA ILE SEQRES 11 B 185 VAL PHE PRO GLY TYR PRO ARG GLY GLN TYR ARG ASN HIS SEQRES 12 B 185 PHE LEU HIS SER PHE ARG PHE GLU ASN GLY LEU ILE LYS SEQRES 13 B 185 GLU GLN ARG GLU PHE MET ASN PRO CYS GLU GLN PHE ARG SEQRES 14 B 185 SER LEU GLY ILE GLU VAL PRO GLU VAL ARG ARG ASP GLY SEQRES 15 B 185 LEU PRO SER HET AOD A 500 20 HET AOD B 500 20 HETNAM AOD 5-BROMO-2-{[(1S,3R)-3-CARBOXYCYCLOHEXYL]AMINO}BENZOIC HETNAM 2 AOD ACID FORMUL 3 AOD 2(C14 H16 BR N O4) FORMUL 5 HOH *379(H2 O) HELIX 1 1 THR A 10 THR A 33 1 24 HELIX 2 2 ARG A 34 LEU A 43 5 10 HELIX 3 3 GLY A 66 PHE A 81 1 16 HELIX 4 4 ASN A 143 LEU A 151 1 9 HELIX 5 5 THR B 10 HIS B 32 1 23 HELIX 6 6 ARG B 34 LEU B 43 5 10 HELIX 7 7 GLY B 66 PHE B 81 1 16 HELIX 8 8 ASN B 143 LEU B 151 1 9 SHEET 1 A 6 ILE A 62 ARG A 65 0 SHEET 2 A 6 PHE A 45 LEU A 53 -1 N GLY A 51 O ILE A 64 SHEET 3 A 6 LEU A 134 MET A 142 1 O GLN A 138 N VAL A 50 SHEET 4 A 6 GLY A 118 GLU A 131 -1 N LEU A 125 O PHE A 141 SHEET 5 A 6 TRP A 99 ILE A 110 -1 N CYS A 104 O PHE A 124 SHEET 6 A 6 VAL A 85 PHE A 92 -1 N PHE A 92 O TRP A 101 SHEET 1 B 6 ILE B 62 ARG B 65 0 SHEET 2 B 6 PHE B 45 LEU B 53 -1 N GLY B 51 O ILE B 64 SHEET 3 B 6 LEU B 134 MET B 142 1 O GLN B 138 N VAL B 50 SHEET 4 B 6 GLY B 118 GLU B 131 -1 N LEU B 125 O PHE B 141 SHEET 5 B 6 TRP B 99 ILE B 110 -1 N GLY B 108 O TYR B 120 SHEET 6 B 6 VAL B 85 GLU B 93 -1 N PHE B 92 O TRP B 101 SITE 1 AC1 13 ARG A 41 ILE A 62 SER A 77 TRP A 84 SITE 2 AC1 13 TRP A 86 GLU A 140 GLN A 147 HOH A 176 SITE 3 AC1 13 HOH A 190 HOH A 220 HOH A 250 HOH A 315 SITE 4 AC1 13 ARG B 160 SITE 1 AC2 15 ARG A 160 ARG B 41 ILE B 62 HIS B 73 SITE 2 AC2 15 SER B 77 PHE B 81 TRP B 84 TRP B 86 SITE 3 AC2 15 PHE B 112 GLU B 140 GLN B 147 HOH B 172 SITE 4 AC2 15 HOH B 189 HOH B 230 HOH B 263 CRYST1 64.690 64.690 160.360 90.00 90.00 120.00 P 32 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015458 0.008925 0.000000 0.00000 SCALE2 0.000000 0.017850 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006236 0.00000