HEADER TRANSCRIPTION 15-SEP-09 3JV6 TITLE CRYSTAL STRUCTURE OF THE DIMERIZATION DOMAINS P52 AND RELB COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSCRIPTION FACTOR RELB; COMPND 3 CHAIN: A, C, E; COMPND 4 FRAGMENT: DIMERIZATION DOMAIN (UNP RESIDUES 278-378); COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: NUCLEAR FACTOR NF-KAPPA-B P100 SUBUNIT; COMPND 8 CHAIN: B, D, F; COMPND 9 FRAGMENT: DIMERIZATION DOMAIN (UNP RESIDUES 225-331); COMPND 10 SYNONYM: DNA-BINDING FACTOR KBF2, NUCLEAR FACTOR NF-KAPPA-B P52 COMPND 11 SUBUNIT; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: RELB; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: T7 PROMOTER; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET15B; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 13 ORGANISM_COMMON: MOUSE; SOURCE 14 ORGANISM_TAXID: 10090; SOURCE 15 GENE: P52; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 18 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: T7 PROMOTER; SOURCE 20 EXPRESSION_SYSTEM_PLASMID: PET29B KEYWDS NF-KB PROTEIN, HETERODIMER, RELB AND P52, ACTIVATOR, NUCLEUS, KEYWDS 2 PHOSPHOPROTEIN, TRANSCRIPTION, TRANSCRIPTION REGULATION, ANK REPEAT, KEYWDS 3 DNA-BINDING, ISOPEPTIDE BOND EXPDTA X-RAY DIFFRACTION AUTHOR D.VU,D.B.HUANG,G.GHOSH REVDAT 4 21-FEB-24 3JV6 1 REMARK SEQADV REVDAT 3 04-SEP-13 3JV6 1 JRNL REVDAT 2 27-MAR-13 3JV6 1 JRNL VERSN REVDAT 1 24-NOV-10 3JV6 0 JRNL AUTH D.VU,D.B.HUANG,A.VEMU,G.GHOSH JRNL TITL A STRUCTURAL BASIS FOR SELECTIVE DIMERIZATION BY NF-KAPPA B JRNL TITL 2 RELB. JRNL REF J.MOL.BIOL. V. 425 1934 2013 JRNL REFN ISSN 0022-2836 JRNL PMID 23485337 JRNL DOI 10.1016/J.JMB.2013.02.020 REMARK 2 REMARK 2 RESOLUTION. 2.78 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.78 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.63 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 136706.000 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 70.3 REMARK 3 NUMBER OF REFLECTIONS : 26839 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.205 REMARK 3 FREE R VALUE : 0.248 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1338 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.007 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 8 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.78 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.91 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 35.00 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 1561 REMARK 3 BIN R VALUE (WORKING SET) : 0.4450 REMARK 3 BIN FREE R VALUE : 0.4960 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.20 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 85 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.054 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5000 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 45 REMARK 3 SOLVENT ATOMS : 146 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 48.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 74.11 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -33.02000 REMARK 3 B22 (A**2) : 67.79000 REMARK 3 B33 (A**2) : -34.77000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.44 REMARK 3 ESD FROM SIGMAA (A) : 1.19 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.50 REMARK 3 ESD FROM C-V SIGMAA (A) : 1.10 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.007 REMARK 3 BOND ANGLES (DEGREES) : 1.400 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 24.90 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.870 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : GROUP REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.30 REMARK 3 BSOL : 44.26 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 GROUP 2 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 2 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : AS.PARAM REMARK 3 PARAMETER FILE 3 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 4 : ION.PARAM REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : AS.TOP REMARK 3 TOPOLOGY FILE 3 : WATER.TOP REMARK 3 TOPOLOGY FILE 4 : ION.TOP REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3JV6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-SEP-09. REMARK 100 THE DEPOSITION ID IS D_1000055199. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-OCT-06 REMARK 200 TEMPERATURE (KELVIN) : 105 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU200 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : OSMIC MIRROR REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 345 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30666 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 80.0 REMARK 200 DATA REDUNDANCY : 4.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.10500 REMARK 200 FOR THE DATA SET : 8.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.78 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.88 REMARK 200 COMPLETENESS FOR SHELL (%) : 64.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.00 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.55400 REMARK 200 FOR SHELL : 2.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 76.65 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 5.27 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 8000, AMMONIUM SULFATE, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 63.16750 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 70.57200 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 84.49300 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 63.16750 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 70.57200 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 84.49300 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 63.16750 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 70.57200 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 84.49300 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 63.16750 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 70.57200 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 84.49300 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1920 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11550 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -42.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1920 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11460 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -40.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1880 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11360 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -40.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP D 331 REMARK 465 GLU F 330 REMARK 465 ASP F 331 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 285 157.99 172.81 REMARK 500 LYS A 305 126.05 -33.91 REMARK 500 ASP A 310 58.40 -162.27 REMARK 500 GLU A 321 105.02 178.24 REMARK 500 PRO A 377 170.31 -57.27 REMARK 500 ASP B 234 -63.74 -19.48 REMARK 500 LYS B 252 108.53 -24.69 REMARK 500 LYS B 255 -40.94 -28.14 REMARK 500 ASP B 265 12.68 -63.96 REMARK 500 ASP B 266 -166.30 -73.39 REMARK 500 PHE B 276 146.73 -173.35 REMARK 500 LYS B 283 38.78 34.31 REMARK 500 LYS B 298 44.56 -95.25 REMARK 500 PRO B 302 103.04 -47.84 REMARK 500 VAL B 328 102.46 -56.87 REMARK 500 GLU B 330 -174.84 -58.50 REMARK 500 ARG C 285 158.25 177.23 REMARK 500 LYS C 305 130.42 -38.95 REMARK 500 ASP C 310 55.90 -162.45 REMARK 500 GLU C 321 102.88 174.03 REMARK 500 PRO C 377 -178.93 -59.48 REMARK 500 ASP D 234 -77.16 -40.56 REMARK 500 LYS D 252 130.73 -30.75 REMARK 500 LYS D 255 -47.38 -27.41 REMARK 500 TYR D 263 149.07 178.89 REMARK 500 ASP D 266 -146.91 -158.14 REMARK 500 ASP D 280 5.78 -57.42 REMARK 500 LYS D 283 53.20 31.66 REMARK 500 GLN D 284 -18.48 68.25 REMARK 500 ARG D 313 -81.85 -71.91 REMARK 500 LYS E 305 126.56 -33.95 REMARK 500 ASP E 310 56.96 -162.93 REMARK 500 GLU E 321 99.54 176.31 REMARK 500 PRO E 377 -178.58 -66.02 REMARK 500 ASP F 234 -67.50 -17.86 REMARK 500 LYS F 252 110.47 -26.48 REMARK 500 LYS F 255 -39.62 -30.28 REMARK 500 ASP F 266 -154.69 -152.79 REMARK 500 PHE F 276 148.82 -173.31 REMARK 500 GLN F 284 -2.06 70.88 REMARK 500 LYS F 298 39.49 -90.28 REMARK 500 PRO F 302 103.01 -49.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 606 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 607 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 C 605 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 D 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 D 608 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 E 604 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 F 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 F 609 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3JTC RELATED DB: PDB REMARK 900 RELATED ID: 3JUZ RELATED DB: PDB REMARK 900 RELATED ID: 3JV0 RELATED DB: PDB REMARK 900 RELATED ID: 3JV4 RELATED DB: PDB REMARK 900 RELATED ID: 3JV5 RELATED DB: PDB DBREF 3JV6 A 278 378 UNP Q04863 RELB_MOUSE 278 378 DBREF 3JV6 B 225 331 UNP Q9WTK5 NFKB2_MOUSE 225 331 DBREF 3JV6 C 278 378 UNP Q04863 RELB_MOUSE 278 378 DBREF 3JV6 D 225 331 UNP Q9WTK5 NFKB2_MOUSE 225 331 DBREF 3JV6 E 278 378 UNP Q04863 RELB_MOUSE 278 378 DBREF 3JV6 F 225 331 UNP Q9WTK5 NFKB2_MOUSE 225 331 SEQADV 3JV6 VAL B 328 UNP Q9WTK5 LEU 328 CONFLICT SEQADV 3JV6 VAL D 328 UNP Q9WTK5 LEU 328 CONFLICT SEQADV 3JV6 VAL F 328 UNP Q9WTK5 LEU 328 CONFLICT SEQRES 1 A 101 THR SER GLU LEU ARG ILE CYS ARG ILE ASN LYS GLU SER SEQRES 2 A 101 GLY PRO CYS THR GLY GLY GLU GLU LEU TYR LEU LEU CYS SEQRES 3 A 101 ASP LYS VAL GLN LYS GLU ASP ILE SER VAL VAL PHE SER SEQRES 4 A 101 THR ALA SER TRP GLU GLY ARG ALA ASP PHE SER GLN ALA SEQRES 5 A 101 ASP VAL HIS ARG GLN ILE ALA ILE VAL PHE LYS THR PRO SEQRES 6 A 101 PRO TYR GLU ASP LEU GLU ILE SER GLU PRO VAL THR VAL SEQRES 7 A 101 ASN VAL PHE LEU GLN ARG LEU THR ASP GLY VAL CYS SER SEQRES 8 A 101 GLU PRO LEU PRO PHE THR TYR LEU PRO ARG SEQRES 1 B 107 ALA SER ASN LEU LYS ILE SER ARG MET ASP LYS THR ALA SEQRES 2 B 107 GLY SER VAL ARG GLY GLY ASP GLU VAL TYR LEU LEU CYS SEQRES 3 B 107 ASP LYS VAL GLN LYS ASP ASP ILE GLU VAL ARG PHE TYR SEQRES 4 B 107 GLU ASP ASP GLU ASN GLY TRP GLN ALA PHE GLY ASP PHE SEQRES 5 B 107 SER PRO THR ASP VAL HIS LYS GLN TYR ALA ILE VAL PHE SEQRES 6 B 107 ARG THR PRO PRO TYR HIS LYS MET LYS ILE GLU ARG PRO SEQRES 7 B 107 VAL THR VAL PHE LEU GLN LEU LYS ARG LYS ARG GLY GLY SEQRES 8 B 107 ASP VAL SER ASP SER LYS GLN PHE THR TYR TYR PRO VAL SEQRES 9 B 107 VAL GLU ASP SEQRES 1 C 101 THR SER GLU LEU ARG ILE CYS ARG ILE ASN LYS GLU SER SEQRES 2 C 101 GLY PRO CYS THR GLY GLY GLU GLU LEU TYR LEU LEU CYS SEQRES 3 C 101 ASP LYS VAL GLN LYS GLU ASP ILE SER VAL VAL PHE SER SEQRES 4 C 101 THR ALA SER TRP GLU GLY ARG ALA ASP PHE SER GLN ALA SEQRES 5 C 101 ASP VAL HIS ARG GLN ILE ALA ILE VAL PHE LYS THR PRO SEQRES 6 C 101 PRO TYR GLU ASP LEU GLU ILE SER GLU PRO VAL THR VAL SEQRES 7 C 101 ASN VAL PHE LEU GLN ARG LEU THR ASP GLY VAL CYS SER SEQRES 8 C 101 GLU PRO LEU PRO PHE THR TYR LEU PRO ARG SEQRES 1 D 107 ALA SER ASN LEU LYS ILE SER ARG MET ASP LYS THR ALA SEQRES 2 D 107 GLY SER VAL ARG GLY GLY ASP GLU VAL TYR LEU LEU CYS SEQRES 3 D 107 ASP LYS VAL GLN LYS ASP ASP ILE GLU VAL ARG PHE TYR SEQRES 4 D 107 GLU ASP ASP GLU ASN GLY TRP GLN ALA PHE GLY ASP PHE SEQRES 5 D 107 SER PRO THR ASP VAL HIS LYS GLN TYR ALA ILE VAL PHE SEQRES 6 D 107 ARG THR PRO PRO TYR HIS LYS MET LYS ILE GLU ARG PRO SEQRES 7 D 107 VAL THR VAL PHE LEU GLN LEU LYS ARG LYS ARG GLY GLY SEQRES 8 D 107 ASP VAL SER ASP SER LYS GLN PHE THR TYR TYR PRO VAL SEQRES 9 D 107 VAL GLU ASP SEQRES 1 E 101 THR SER GLU LEU ARG ILE CYS ARG ILE ASN LYS GLU SER SEQRES 2 E 101 GLY PRO CYS THR GLY GLY GLU GLU LEU TYR LEU LEU CYS SEQRES 3 E 101 ASP LYS VAL GLN LYS GLU ASP ILE SER VAL VAL PHE SER SEQRES 4 E 101 THR ALA SER TRP GLU GLY ARG ALA ASP PHE SER GLN ALA SEQRES 5 E 101 ASP VAL HIS ARG GLN ILE ALA ILE VAL PHE LYS THR PRO SEQRES 6 E 101 PRO TYR GLU ASP LEU GLU ILE SER GLU PRO VAL THR VAL SEQRES 7 E 101 ASN VAL PHE LEU GLN ARG LEU THR ASP GLY VAL CYS SER SEQRES 8 E 101 GLU PRO LEU PRO PHE THR TYR LEU PRO ARG SEQRES 1 F 107 ALA SER ASN LEU LYS ILE SER ARG MET ASP LYS THR ALA SEQRES 2 F 107 GLY SER VAL ARG GLY GLY ASP GLU VAL TYR LEU LEU CYS SEQRES 3 F 107 ASP LYS VAL GLN LYS ASP ASP ILE GLU VAL ARG PHE TYR SEQRES 4 F 107 GLU ASP ASP GLU ASN GLY TRP GLN ALA PHE GLY ASP PHE SEQRES 5 F 107 SER PRO THR ASP VAL HIS LYS GLN TYR ALA ILE VAL PHE SEQRES 6 F 107 ARG THR PRO PRO TYR HIS LYS MET LYS ILE GLU ARG PRO SEQRES 7 F 107 VAL THR VAL PHE LEU GLN LEU LYS ARG LYS ARG GLY GLY SEQRES 8 F 107 ASP VAL SER ASP SER LYS GLN PHE THR TYR TYR PRO VAL SEQRES 9 F 107 VAL GLU ASP HET SO4 A 606 5 HET SO4 B 601 5 HET SO4 B 607 5 HET SO4 C 605 5 HET SO4 D 603 5 HET SO4 D 608 5 HET SO4 E 604 5 HET SO4 F 602 5 HET SO4 F 609 5 HETNAM SO4 SULFATE ION FORMUL 7 SO4 9(O4 S 2-) FORMUL 16 HOH *146(H2 O) HELIX 1 1 SER A 327 GLN A 334 5 8 HELIX 2 2 SER B 277 THR B 279 5 3 HELIX 3 3 SER C 327 GLN C 334 5 8 HELIX 4 4 SER E 327 GLN E 334 5 8 HELIX 5 5 SER F 277 THR F 279 5 3 SHEET 1 A 3 ILE A 283 ILE A 286 0 SHEET 2 A 3 GLU A 298 CYS A 303 -1 O LEU A 302 N CYS A 284 SHEET 3 A 3 ALA A 336 LYS A 340 -1 O PHE A 339 N LEU A 299 SHEET 1 B 5 SER A 290 PRO A 292 0 SHEET 2 B 5 LEU A 371 LEU A 376 1 O LEU A 376 N GLY A 291 SHEET 3 B 5 VAL A 353 GLN A 360 -1 N VAL A 355 O PHE A 373 SHEET 4 B 5 SER A 312 SER A 316 -1 N SER A 316 O ASN A 356 SHEET 5 B 5 GLU A 321 ARG A 323 -1 O GLY A 322 N PHE A 315 SHEET 1 C 4 ILE B 230 MET B 233 0 SHEET 2 C 4 GLU B 245 CYS B 250 -1 O LEU B 249 N ARG B 232 SHEET 3 C 4 ALA B 286 ARG B 290 -1 O ILE B 287 N LEU B 248 SHEET 4 C 4 VAL B 281 HIS B 282 -1 N HIS B 282 O ALA B 286 SHEET 1 D 5 ALA B 237 SER B 239 0 SHEET 2 D 5 LYS B 321 TYR B 326 1 O TYR B 326 N GLY B 238 SHEET 3 D 5 VAL B 303 ARG B 311 -1 N VAL B 303 O TYR B 325 SHEET 4 D 5 ILE B 258 TYR B 263 -1 N TYR B 263 O PHE B 306 SHEET 5 D 5 GLN B 271 PHE B 273 -1 O ALA B 272 N PHE B 262 SHEET 1 E 3 ILE C 283 ILE C 286 0 SHEET 2 E 3 GLU C 298 CYS C 303 -1 O LEU C 302 N CYS C 284 SHEET 3 E 3 ALA C 336 LYS C 340 -1 O PHE C 339 N LEU C 299 SHEET 1 F 5 SER C 290 PRO C 292 0 SHEET 2 F 5 LEU C 371 LEU C 376 1 O LEU C 376 N GLY C 291 SHEET 3 F 5 VAL C 353 GLN C 360 -1 N VAL C 355 O PHE C 373 SHEET 4 F 5 SER C 312 SER C 316 -1 N SER C 316 O ASN C 356 SHEET 5 F 5 GLU C 321 ARG C 323 -1 O GLY C 322 N PHE C 315 SHEET 1 G 4 ILE D 230 MET D 233 0 SHEET 2 G 4 GLU D 245 CYS D 250 -1 O LEU D 249 N ARG D 232 SHEET 3 G 4 ALA D 286 ARG D 290 -1 O ILE D 287 N LEU D 248 SHEET 4 G 4 VAL D 281 HIS D 282 -1 N HIS D 282 O ALA D 286 SHEET 1 H 5 ALA D 237 SER D 239 0 SHEET 2 H 5 LYS D 321 TYR D 326 1 O THR D 324 N GLY D 238 SHEET 3 H 5 VAL D 303 ARG D 311 -1 N VAL D 305 O PHE D 323 SHEET 4 H 5 ILE D 258 TYR D 263 -1 N ARG D 261 O GLN D 308 SHEET 5 H 5 GLN D 271 PHE D 273 -1 O ALA D 272 N PHE D 262 SHEET 1 I 3 ILE E 283 ILE E 286 0 SHEET 2 I 3 GLU E 298 CYS E 303 -1 O LEU E 302 N CYS E 284 SHEET 3 I 3 ALA E 336 LYS E 340 -1 O PHE E 339 N LEU E 299 SHEET 1 J 5 SER E 290 PRO E 292 0 SHEET 2 J 5 LEU E 371 LEU E 376 1 O LEU E 376 N GLY E 291 SHEET 3 J 5 VAL E 353 GLN E 360 -1 N VAL E 353 O TYR E 375 SHEET 4 J 5 SER E 312 SER E 316 -1 N SER E 316 O ASN E 356 SHEET 5 J 5 GLU E 321 ARG E 323 -1 O GLY E 322 N PHE E 315 SHEET 1 K 4 ILE F 230 MET F 233 0 SHEET 2 K 4 GLU F 245 CYS F 250 -1 O LEU F 249 N ARG F 232 SHEET 3 K 4 ALA F 286 ARG F 290 -1 O ILE F 287 N LEU F 248 SHEET 4 K 4 VAL F 281 HIS F 282 -1 N HIS F 282 O ALA F 286 SHEET 1 L 5 ALA F 237 SER F 239 0 SHEET 2 L 5 LYS F 321 TYR F 326 1 O TYR F 326 N GLY F 238 SHEET 3 L 5 VAL F 303 ARG F 311 -1 N VAL F 303 O TYR F 325 SHEET 4 L 5 ILE F 258 TYR F 263 -1 N ARG F 261 O GLN F 308 SHEET 5 L 5 GLN F 271 PHE F 273 -1 O ALA F 272 N PHE F 262 SITE 1 AC1 3 LYS A 308 VAL A 331 ARG A 333 SITE 1 AC2 5 LYS B 235 ASP B 244 GLU B 245 ARG B 290 SITE 2 AC2 5 GLN D 271 SITE 1 AC3 4 LYS B 255 LYS B 283 GLN B 284 HOH B 476 SITE 1 AC4 4 LYS C 308 VAL C 331 ARG C 333 HOH C 505 SITE 1 AC5 5 LYS D 235 GLU D 245 ARG D 290 HOH D 473 SITE 2 AC5 5 GLN F 271 SITE 1 AC6 2 LYS D 283 GLN D 284 SITE 1 AC7 3 LYS E 308 ARG E 333 HOH E 509 SITE 1 AC8 3 GLN B 271 GLU F 245 ARG F 290 SITE 1 AC9 2 LYS F 255 LYS F 283 CRYST1 126.335 141.144 168.986 90.00 90.00 90.00 I 2 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007915 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007085 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005918 0.00000