HEADER VIRAL PROTEIN 16-SEP-09 3JVB TITLE CRYSTAL STRUCTURE OF INFECTIOUS BACULOVIRUS POLYHEDRA COMPND MOL_ID: 1; COMPND 2 MOLECULE: POLYHEDRIN; COMPND 3 CHAIN: A SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: WISEANA SIGNATA NPV; SOURCE 3 ORGANISM_TAXID: 65124; SOURCE 4 OTHER_DETAILS: CRYSTALS WERE DIRECTLY PURIFIED FROM INSECTS (LARVAE SOURCE 5 OF PORINA MOTHS) NATURALLY INFECTED BY A BACULOVIRUS (WISEANA SPP. SOURCE 6 NUCLEOPOLYHEDROSIS VIRUS) KEYWDS JELLY-ROLL, DISULFIDE BOND, DOMAIN SWAPPING, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR F.COULIBALY,E.CHIU,P.METCALF REVDAT 5 13-NOV-24 3JVB 1 REMARK REVDAT 4 01-NOV-23 3JVB 1 REMARK REVDAT 3 12-JAN-10 3JVB 1 JRNL REVDAT 2 29-DEC-09 3JVB 1 JRNL REVDAT 1 08-DEC-09 3JVB 0 JRNL AUTH F.COULIBALY,E.CHIU,S.GUTMANN,C.RAJENDRAN,P.W.HAEBEL,K.IKEDA, JRNL AUTH 2 H.MORI,V.K.WARD,C.SCHULZE-BRIESE,P.METCALF JRNL TITL THE ATOMIC STRUCTURE OF BACULOVIRUS POLYHEDRA REVEALS THE JRNL TITL 2 INDEPENDENT EMERGENCE OF INFECTIOUS CRYSTALS IN DNA AND RNA JRNL TITL 3 VIRUSES JRNL REF PROC.NATL.ACAD.SCI.USA V. 106 22205 2009 JRNL REFN ISSN 0027-8424 JRNL PMID 20007786 JRNL DOI 10.1073/PNAS.0910686106 REMARK 2 REMARK 2 RESOLUTION. 2.17 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.8.0 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.17 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.91 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 9620 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.164 REMARK 3 R VALUE (WORKING SET) : 0.161 REMARK 3 FREE R VALUE : 0.190 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.840 REMARK 3 FREE R VALUE TEST SET COUNT : 947 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 5 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.17 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.43 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.90 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2702 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.1940 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2428 REMARK 3 BIN R VALUE (WORKING SET) : 0.1905 REMARK 3 BIN FREE R VALUE : 0.2244 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 10.14 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 274 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1613 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 5 REMARK 3 SOLVENT ATOMS : 86 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 21.21 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.58 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.198 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.945 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.932 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : NULL ; NULL ; NULL REMARK 3 BOND ANGLES : NULL ; NULL ; NULL REMARK 3 TORSION ANGLES : NULL ; NULL ; NULL REMARK 3 TRIGONAL CARBON PLANES : NULL ; NULL ; NULL REMARK 3 GENERAL PLANES : NULL ; NULL ; NULL REMARK 3 ISOTROPIC THERMAL FACTORS : NULL ; NULL ; NULL REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : NULL ; NULL ; NULL REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : NULL ; NULL ; NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : NULL REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : NULL REMARK 3 OTHER TORSION ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: RESIDUE ACYS131 FORMS A DISULFIDE BOND REMARK 3 WITH RESIDUE BCYS131 OF SYMMETRY MOLECULE 4566. BY SYMMETRY, REMARK 3 THIS ALSO IMPLIES THAT RESIDUE BCYS131 FORMS A DISULFIDE BOND REMARK 3 WITH RESIDUE ACYS131 OF SYMMETRY MOLECULE 4566. REMARK 4 REMARK 4 3JVB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 18-SEP-09. REMARK 100 THE DEPOSITION ID IS D_1000055204. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-APR-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 19 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : SAGITALLY HORIZONTAL FOCUSSING REMARK 200 SI(111) MERIDIONALLY VERTICAL REMARK 200 FOCUSSING RH-COATED MIRROR REMARK 200 OPTICS : MD2 DIFFRACTOMETER REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 9646 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.170 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 15.00 REMARK 200 R MERGE (I) : 0.34900 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 8.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.17 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.29 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 14.50 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: SHARP REMARK 200 STARTING MODEL: PDB ENTRY 3JW6 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 21.16 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.56 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NATURAL INTRACELLULAR CRYSTALS WERE REMARK 280 DIRECTLY PURIFIED FROM LARVAE OF PORINA MOTHS INFECTED BY A REMARK 280 BACULOVIRUS (WNPV), PH 7, TEMPERATURE 300K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z,-X,-Y REMARK 290 7555 -Z,-X,Y REMARK 290 8555 -Z,X,-Y REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z,-X REMARK 290 11555 Y,-Z,-X REMARK 290 12555 -Y,-Z,X REMARK 290 13555 X+1/2,Y+1/2,Z+1/2 REMARK 290 14555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 15555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 16555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 17555 Z+1/2,X+1/2,Y+1/2 REMARK 290 18555 Z+1/2,-X+1/2,-Y+1/2 REMARK 290 19555 -Z+1/2,-X+1/2,Y+1/2 REMARK 290 20555 -Z+1/2,X+1/2,-Y+1/2 REMARK 290 21555 Y+1/2,Z+1/2,X+1/2 REMARK 290 22555 -Y+1/2,Z+1/2,-X+1/2 REMARK 290 23555 Y+1/2,-Z+1/2,-X+1/2 REMARK 290 24555 -Y+1/2,-Z+1/2,X+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 51.21850 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 51.21850 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 51.21850 REMARK 290 SMTRY1 14 -1.000000 0.000000 0.000000 51.21850 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 51.21850 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 51.21850 REMARK 290 SMTRY1 15 -1.000000 0.000000 0.000000 51.21850 REMARK 290 SMTRY2 15 0.000000 1.000000 0.000000 51.21850 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 51.21850 REMARK 290 SMTRY1 16 1.000000 0.000000 0.000000 51.21850 REMARK 290 SMTRY2 16 0.000000 -1.000000 0.000000 51.21850 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 51.21850 REMARK 290 SMTRY1 17 0.000000 0.000000 1.000000 51.21850 REMARK 290 SMTRY2 17 1.000000 0.000000 0.000000 51.21850 REMARK 290 SMTRY3 17 0.000000 1.000000 0.000000 51.21850 REMARK 290 SMTRY1 18 0.000000 0.000000 1.000000 51.21850 REMARK 290 SMTRY2 18 -1.000000 0.000000 0.000000 51.21850 REMARK 290 SMTRY3 18 0.000000 -1.000000 0.000000 51.21850 REMARK 290 SMTRY1 19 0.000000 0.000000 -1.000000 51.21850 REMARK 290 SMTRY2 19 -1.000000 0.000000 0.000000 51.21850 REMARK 290 SMTRY3 19 0.000000 1.000000 0.000000 51.21850 REMARK 290 SMTRY1 20 0.000000 0.000000 -1.000000 51.21850 REMARK 290 SMTRY2 20 1.000000 0.000000 0.000000 51.21850 REMARK 290 SMTRY3 20 0.000000 -1.000000 0.000000 51.21850 REMARK 290 SMTRY1 21 0.000000 1.000000 0.000000 51.21850 REMARK 290 SMTRY2 21 0.000000 0.000000 1.000000 51.21850 REMARK 290 SMTRY3 21 1.000000 0.000000 0.000000 51.21850 REMARK 290 SMTRY1 22 0.000000 -1.000000 0.000000 51.21850 REMARK 290 SMTRY2 22 0.000000 0.000000 1.000000 51.21850 REMARK 290 SMTRY3 22 -1.000000 0.000000 0.000000 51.21850 REMARK 290 SMTRY1 23 0.000000 1.000000 0.000000 51.21850 REMARK 290 SMTRY2 23 0.000000 0.000000 -1.000000 51.21850 REMARK 290 SMTRY3 23 -1.000000 0.000000 0.000000 51.21850 REMARK 290 SMTRY1 24 0.000000 -1.000000 0.000000 51.21850 REMARK 290 SMTRY2 24 0.000000 0.000000 -1.000000 51.21850 REMARK 290 SMTRY3 24 1.000000 0.000000 0.000000 51.21850 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: POLYHEDRA ARE VIRUS-CONTAINING CRYSTALS, WHICH REPRESENT REMARK 300 THE MAIN INFECTIOUS FORM OF BACULOVIRUS. THE BIOLOGICAL ASSEMBLY IS REMARK 300 THE WHOLE CRYSTAL. DODECAMERS OF THE POLYHEDRIN PROTEIN ARE REMARK 300 PUTATIVE BUILDING BLOCKS OF THE CRYSTAL. INTERFACES INVOLVED IN REMARK 300 GENERATING BIOMOLECULES 2-7 EXIST IN THE CRYSTAL BUT MAY NOT BE REMARK 300 RELEVANT IN SOLUTION. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DODECAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DODECAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 62440 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 109170 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -443.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 102.43700 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 102.43700 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 102.43700 REMARK 350 BIOMT2 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 102.43700 REMARK 350 BIOMT1 4 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 102.43700 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 102.43700 REMARK 350 BIOMT1 5 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT2 5 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 5 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT1 6 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT2 6 -1.000000 0.000000 0.000000 102.43700 REMARK 350 BIOMT3 6 0.000000 -1.000000 0.000000 102.43700 REMARK 350 BIOMT1 7 0.000000 0.000000 -1.000000 102.43700 REMARK 350 BIOMT2 7 -1.000000 0.000000 0.000000 102.43700 REMARK 350 BIOMT3 7 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT1 8 0.000000 0.000000 -1.000000 102.43700 REMARK 350 BIOMT2 8 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 8 0.000000 -1.000000 0.000000 102.43700 REMARK 350 BIOMT1 9 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 9 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT3 9 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT1 10 0.000000 -1.000000 0.000000 102.43700 REMARK 350 BIOMT2 10 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT3 10 -1.000000 0.000000 0.000000 102.43700 REMARK 350 BIOMT1 11 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 11 0.000000 0.000000 -1.000000 102.43700 REMARK 350 BIOMT3 11 -1.000000 0.000000 0.000000 102.43700 REMARK 350 BIOMT1 12 0.000000 -1.000000 0.000000 102.43700 REMARK 350 BIOMT2 12 0.000000 0.000000 -1.000000 102.43700 REMARK 350 BIOMT3 12 1.000000 0.000000 0.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 S SO4 A 244 LIES ON A SPECIAL POSITION. REMARK 375 O1 SO4 A 244 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 TYR A 2 REMARK 465 THR A 3 REMARK 465 ALA A 4 REMARK 465 TYR A 5 REMARK 465 PRO A 6 REMARK 465 TYR A 7 REMARK 465 PRO A 8 REMARK 465 LYS A 9 REMARK 465 GLU A 37 REMARK 465 GLU A 38 REMARK 465 GLN A 39 REMARK 465 CYS A 142 REMARK 465 ASP A 143 REMARK 465 PRO A 144 REMARK 465 ASP A 145 REMARK 465 LYS A 171 REMARK 465 ARG A 172 REMARK 465 GLY A 173 REMARK 465 GLY A 174 REMARK 465 GLY A 175 REMARK 465 CYS A 176 REMARK 465 PRO A 177 REMARK 465 ILE A 178 REMARK 465 MET A 179 REMARK 465 ASN A 180 REMARK 465 LEU A 181 REMARK 465 HIS A 182 REMARK 465 LEU A 183 REMARK 465 GLU A 184 REMARK 465 TYR A 185 REMARK 465 LYS A 195 REMARK 465 VAL A 196 REMARK 465 ILE A 197 REMARK 465 TRP A 198 REMARK 465 GLU A 199 REMARK 465 ASN A 200 REMARK 465 PHE A 201 REMARK 465 TYR A 202 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 11 CG CD CE NZ REMARK 470 ASP A 16 CG OD1 OD2 REMARK 470 LYS A 28 CG CD CE NZ REMARK 470 ARG A 32 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 33 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 34 CG CD CE NZ REMARK 470 HIS A 35 CG ND1 CD2 CE1 NE2 REMARK 470 GLU A 36 CG CD OE1 OE2 REMARK 470 GLU A 40 CG CD OE1 OE2 REMARK 470 LYS A 41 CG CD CE NZ REMARK 470 VAL A 42 CG1 CG2 REMARK 470 GLU A 43 CG CD OE1 OE2 REMARK 470 ARG A 44 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 45 CG CD OE1 OE2 REMARK 470 ASP A 47 CG OD1 OD2 REMARK 470 LYS A 51 CG CD CE NZ REMARK 470 ARG A 141 CG CD NE CZ NH1 NH2 REMARK 470 TYR A 146 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ASP A 215 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 16 63.37 38.43 REMARK 500 ASN A 162 -121.42 62.12 REMARK 500 PHE A 231 76.96 -114.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 244 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3JW6 RELATED DB: PDB REMARK 900 ACMNPV POLYHEDRIN (G25D MUTANT) DBREF 3JVB A 1 243 UNP O37157 O37157_9ABAC 1 243 SEQRES 1 A 243 MET TYR THR ALA TYR PRO TYR PRO LYS GLY LYS THR TYR SEQRES 2 A 243 VAL TYR ASP ASN ARG TYR TRP LYS ASN LEU GLY GLY VAL SEQRES 3 A 243 ILE LYS ASN ALA LYS ARG ARG LYS HIS GLU GLU GLU GLN SEQRES 4 A 243 GLU LYS VAL GLU ARG GLU PHE ASP SER LEU ASP LYS TYR SEQRES 5 A 243 LEU VAL ALA GLU ASP PRO PHE CYS GLY PRO GLY LYS ASN SEQRES 6 A 243 GLN LYS LEU THR LEU PHE LYS GLU ILE ARG ASN ILE LYS SEQRES 7 A 243 PRO ASP THR MET LYS LEU ILE VAL ASN TRP SER GLY LYS SEQRES 8 A 243 GLU PHE LEU ARG GLU THR TRP THR ARG PHE MET GLU ASP SEQRES 9 A 243 SER PHE PRO ILE VAL ASN ASP GLN GLU VAL MET ASP VAL SEQRES 10 A 243 PHE LEU VAL ILE ASN MET ARG SER THR LYS PRO ASN ARG SEQRES 11 A 243 CYS PHE ARG PHE LEU ALA GLN HIS ALA LEU ARG CYS ASP SEQRES 12 A 243 PRO ASP TYR VAL PRO HIS GLU ILE ILE ARG ILE VAL GLU SEQRES 13 A 243 PRO SER TYR VAL GLY ASN ASN GLU TYR ARG ILE SER LEU SEQRES 14 A 243 ALA LYS ARG GLY GLY GLY CYS PRO ILE MET ASN LEU HIS SEQRES 15 A 243 LEU GLU TYR THR ASN SER PHE GLU HIS PHE ILE ASN LYS SEQRES 16 A 243 VAL ILE TRP GLU ASN PHE TYR LYS PRO ILE VAL TYR ILE SEQRES 17 A 243 GLY THR ASP SER ALA GLU ASP GLU GLU VAL LEU PHE GLU SEQRES 18 A 243 VAL SER LEU VAL PHE LYS ILE LYS GLU PHE ALA PRO ASP SEQRES 19 A 243 ALA PRO LEU PHE SER GLY PRO ALA TYR HET SO4 A 244 5 HETNAM SO4 SULFATE ION FORMUL 2 SO4 O4 S 2- FORMUL 3 HOH *86(H2 O) HELIX 1 1 ASN A 22 GLU A 36 1 15 HELIX 2 2 GLU A 40 ASP A 50 1 11 HELIX 3 3 SER A 89 PHE A 106 1 18 HELIX 4 4 SER A 188 ASN A 194 1 7 SHEET 1 A 2 THR A 12 TYR A 15 0 SHEET 2 A 2 ARG A 18 LYS A 21 -1 O TRP A 20 N TYR A 13 SHEET 1 B 4 LYS A 64 ILE A 77 0 SHEET 2 B 4 GLU A 216 PHE A 231 -1 O PHE A 220 N GLU A 73 SHEET 3 B 4 ASP A 111 SER A 125 -1 N ARG A 124 O LEU A 219 SHEET 4 B 4 GLU A 164 SER A 168 -1 O ILE A 167 N LEU A 119 SHEET 1 C 5 ILE A 151 ARG A 153 0 SHEET 2 C 5 THR A 81 LEU A 84 -1 N MET A 82 O ILE A 152 SHEET 3 C 5 PRO A 204 THR A 210 -1 O ILE A 208 N LYS A 83 SHEET 4 C 5 PHE A 134 LEU A 140 -1 N GLN A 137 O TYR A 207 SHEET 5 C 5 SER A 158 TYR A 159 -1 O SER A 158 N ALA A 136 SSBOND 1 CYS A 131 CYS A 131 1555 4566 2.25 CISPEP 1 PHE A 106 PRO A 107 0 0.64 CISPEP 2 GLY A 240 PRO A 241 0 -0.29 SITE 1 AC1 1 LYS A 31 CRYST1 102.437 102.437 102.437 90.00 90.00 90.00 I 2 3 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009762 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009762 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009762 0.00000