HEADER TRANSCRIPTION REGULATOR 16-SEP-09 3JVD TITLE CRYSTAL STRUCTURE OF PUTATIVE TRANSCRIPTION REGULATION REPRESSOR (LACI TITLE 2 FAMILY) FROM CORYNEBACTERIUM GLUTAMICUM COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSCRIPTIONAL REGULATORS; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: LACI FAMILY PROTEIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CORYNEBACTERIUM GLUTAMICUM; SOURCE 3 ORGANISM_TAXID: 1718; SOURCE 4 ATCC: 13032; SOURCE 5 GENE: CGL2044, YCZA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: MODIFIED PET26 KEYWDS STRUCTURAL GENOMICS, PSI-2, SUGAR BINDING PROTEIN, TRANSCRIPTION KEYWDS 2 REGULATION, PROTEIN STRUCTURE INITIATIVE, NEW YORK SGX RESEARCH KEYWDS 3 CENTER FOR STRUCTURAL GENOMICS, NYSGXRC, DNA-BINDING, TRANSCRIPTION, KEYWDS 4 UNCHARACTERIZED PROTEIN, TRANSCRIPTION REGULATOR EXPDTA X-RAY DIFFRACTION AUTHOR Y.PATSKOVSKY,U.RAMAGOPAL,R.TORO,R.FOTI,J.FREEMAN,J.DO,J.M.SAUDER, AUTHOR 2 S.K.BURLEY,S.C.ALMO,NEW YORK SGX RESEARCH CENTER FOR STRUCTURAL AUTHOR 3 GENOMICS (NYSGXRC) REVDAT 5 21-FEB-24 3JVD 1 REMARK REVDAT 4 10-FEB-21 3JVD 1 AUTHOR JRNL REMARK SEQADV REVDAT 3 21-NOV-18 3JVD 1 AUTHOR REVDAT 2 13-JUL-11 3JVD 1 VERSN REVDAT 1 22-SEP-09 3JVD 0 JRNL AUTH Y.PATSKOVSKY,U.RAMAGOPAL,R.TORO,R.FOTI,J.FREEMAN,J.DO, JRNL AUTH 2 J.M.SAUDER,S.K.BURLEY,S.C.ALMO JRNL TITL CRYSTAL STRUCTURE OF LACI FAMILY PROTEIN FROM JRNL TITL 2 CORYNEBACTERIUM GLUTAMICUM JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.3.0034 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 31506 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.226 REMARK 3 R VALUE (WORKING SET) : 0.224 REMARK 3 FREE R VALUE : 0.284 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.200 REMARK 3 FREE R VALUE TEST SET COUNT : 1032 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.36 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2226 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.48 REMARK 3 BIN R VALUE (WORKING SET) : 0.2720 REMARK 3 BIN FREE R VALUE SET COUNT : 78 REMARK 3 BIN FREE R VALUE : 0.3530 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3858 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 21 REMARK 3 SOLVENT ATOMS : 74 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 50.21 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 60.05 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.42000 REMARK 3 B22 (A**2) : 2.42000 REMARK 3 B33 (A**2) : -3.62000 REMARK 3 B12 (A**2) : 1.21000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.265 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.235 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.184 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.524 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.948 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.913 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3991 ; 0.007 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5439 ; 1.130 ; 1.965 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 525 ; 5.239 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 173 ;37.593 ;24.855 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 631 ;15.905 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 20 ;13.896 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 629 ; 0.074 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3032 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1784 ; 0.136 ; 0.300 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2744 ; 0.292 ; 0.500 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 236 ; 0.143 ; 0.500 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 35 ; 0.136 ; 0.300 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 9 ; 0.130 ; 0.500 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2631 ; 4.742 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4139 ; 6.770 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1500 ; 9.171 ; 4.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1292 ;12.604 ; 6.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 3 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 0 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 1 A (A): 473 ; 0.35 ; 0.30 REMARK 3 TIGHT THERMAL 1 A (A**2): 473 ; 6.92 ; 8.00 REMARK 3 REMARK 3 NCS GROUP NUMBER : 2 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 0 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 2 A (A): 1085 ; 0.56 ; 0.30 REMARK 3 TIGHT THERMAL 2 A (A**2): 1085 ; 7.83 ; 8.00 REMARK 3 REMARK 3 NCS GROUP NUMBER : 3 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 0 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 3 A (A): 101 ; 0.26 ; 0.30 REMARK 3 TIGHT THERMAL 3 A (A**2): 101 ; 3.89 ; 8.00 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3JVD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-SEP-09. REMARK 100 THE DEPOSITION ID IS D_1000055206. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-AUG-09 REMARK 200 TEMPERATURE (KELVIN) : 90 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X29A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9789 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32657 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -5.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 11.70 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.10400 REMARK 200 FOR THE DATA SET : 5.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.38 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 11.60 REMARK 200 R MERGE FOR SHELL (I) : 0.95000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.82 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.45 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M SODIUM CACODYLATE, PH 6.5, 2M REMARK 280 AMMONIUM SULFATE, 200MM SODIUM CHLORIDE, 10% GLYCEROL, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 190.30200 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 95.15100 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 142.72650 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 47.57550 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 237.87750 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 190.30200 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 95.15100 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 47.57550 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 142.72650 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 237.87750 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3190 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21280 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -50.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 LEU A 3 REMARK 465 SER A 4 REMARK 465 ALA A 5 REMARK 465 LYS A 6 REMARK 465 SER A 7 REMARK 465 SER A 8 REMARK 465 LEU A 9 REMARK 465 LYS A 10 REMARK 465 GLU A 11 REMARK 465 VAL A 12 REMARK 465 ALA A 13 REMARK 465 GLU A 14 REMARK 465 LEU A 15 REMARK 465 ALA A 16 REMARK 465 GLY A 17 REMARK 465 VAL A 18 REMARK 465 GLY A 19 REMARK 465 TYR A 20 REMARK 465 ALA A 21 REMARK 465 THR A 22 REMARK 465 ALA A 23 REMARK 465 SER A 24 REMARK 465 ARG A 25 REMARK 465 ALA A 26 REMARK 465 LEU A 27 REMARK 465 SER A 28 REMARK 465 GLY A 29 REMARK 465 LYS A 30 REMARK 465 GLY A 31 REMARK 465 TYR A 32 REMARK 465 VAL A 33 REMARK 465 SER A 34 REMARK 465 PRO A 35 REMARK 465 GLN A 36 REMARK 465 THR A 37 REMARK 465 ARG A 38 REMARK 465 GLU A 39 REMARK 465 LYS A 40 REMARK 465 VAL A 41 REMARK 465 GLN A 42 REMARK 465 ALA A 43 REMARK 465 ALA A 44 REMARK 465 ALA A 45 REMARK 465 LYS A 46 REMARK 465 GLU A 47 REMARK 465 LEU A 48 REMARK 465 ASN A 49 REMARK 465 TYR A 50 REMARK 465 VAL A 51 REMARK 465 PRO A 52 REMARK 465 ASN A 53 REMARK 465 GLN A 54 REMARK 465 LEU A 55 REMARK 465 ALA A 56 REMARK 465 LYS A 57 REMARK 465 ALA A 58 REMARK 465 LEU A 59 REMARK 465 ARG A 60 REMARK 465 GLU A 61 REMARK 465 HIS A 62 REMARK 465 ARG A 63 REMARK 465 PRO A 134 REMARK 465 GLY A 145 REMARK 465 GLU A 146 REMARK 465 LEU A 147 REMARK 465 GLY A 148 REMARK 465 LEU A 306 REMARK 465 PRO A 307 REMARK 465 GLU A 326 REMARK 465 GLY A 327 REMARK 465 HIS A 328 REMARK 465 HIS A 329 REMARK 465 HIS A 330 REMARK 465 HIS A 331 REMARK 465 HIS A 332 REMARK 465 HIS A 333 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 LEU B 3 REMARK 465 SER B 4 REMARK 465 ALA B 5 REMARK 465 LYS B 6 REMARK 465 SER B 7 REMARK 465 SER B 8 REMARK 465 LEU B 9 REMARK 465 LYS B 10 REMARK 465 GLU B 11 REMARK 465 VAL B 12 REMARK 465 ALA B 13 REMARK 465 GLU B 14 REMARK 465 LEU B 15 REMARK 465 ALA B 16 REMARK 465 GLY B 17 REMARK 465 VAL B 18 REMARK 465 GLY B 19 REMARK 465 TYR B 20 REMARK 465 ALA B 21 REMARK 465 THR B 22 REMARK 465 ALA B 23 REMARK 465 SER B 24 REMARK 465 ARG B 25 REMARK 465 ALA B 26 REMARK 465 LEU B 27 REMARK 465 SER B 28 REMARK 465 GLY B 29 REMARK 465 LYS B 30 REMARK 465 GLY B 31 REMARK 465 TYR B 32 REMARK 465 VAL B 33 REMARK 465 SER B 34 REMARK 465 PRO B 35 REMARK 465 GLN B 36 REMARK 465 THR B 37 REMARK 465 ARG B 38 REMARK 465 GLU B 39 REMARK 465 LYS B 40 REMARK 465 VAL B 41 REMARK 465 GLN B 42 REMARK 465 ALA B 43 REMARK 465 ALA B 44 REMARK 465 ALA B 45 REMARK 465 LYS B 46 REMARK 465 GLU B 47 REMARK 465 LEU B 48 REMARK 465 ASN B 49 REMARK 465 TYR B 50 REMARK 465 VAL B 51 REMARK 465 PRO B 52 REMARK 465 ASN B 53 REMARK 465 GLN B 54 REMARK 465 LEU B 55 REMARK 465 ALA B 56 REMARK 465 LYS B 57 REMARK 465 ALA B 58 REMARK 465 LEU B 59 REMARK 465 ARG B 60 REMARK 465 GLU B 61 REMARK 465 HIS B 62 REMARK 465 ARG B 63 REMARK 465 VAL B 129 REMARK 465 GLY B 130 REMARK 465 SER B 131 REMARK 465 ILE B 132 REMARK 465 GLU B 326 REMARK 465 GLY B 327 REMARK 465 HIS B 328 REMARK 465 HIS B 329 REMARK 465 HIS B 330 REMARK 465 HIS B 331 REMARK 465 HIS B 332 REMARK 465 HIS B 333 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 65 47.29 -99.42 REMARK 500 ASP A 73 114.33 -164.42 REMARK 500 THR A 143 -36.38 66.22 REMARK 500 ASP A 267 -172.73 66.23 REMARK 500 ALA A 277 19.98 59.36 REMARK 500 THR B 143 -25.03 67.66 REMARK 500 ASP B 267 -167.40 68.59 REMARK 500 ASP B 268 69.48 -150.70 REMARK 500 ARG B 320 -159.19 -130.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 334 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 335 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 336 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 334 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: NYSGXRC-11235L RELATED DB: TARGETDB DBREF 3JVD A 4 325 UNP Q8NNY3 Q8NNY3_CORGL 2 323 DBREF 3JVD B 4 325 UNP Q8NNY3 Q8NNY3_CORGL 2 323 SEQADV 3JVD MET A 1 UNP Q8NNY3 EXPRESSION TAG SEQADV 3JVD SER A 2 UNP Q8NNY3 EXPRESSION TAG SEQADV 3JVD LEU A 3 UNP Q8NNY3 EXPRESSION TAG SEQADV 3JVD GLU A 326 UNP Q8NNY3 EXPRESSION TAG SEQADV 3JVD GLY A 327 UNP Q8NNY3 EXPRESSION TAG SEQADV 3JVD HIS A 328 UNP Q8NNY3 EXPRESSION TAG SEQADV 3JVD HIS A 329 UNP Q8NNY3 EXPRESSION TAG SEQADV 3JVD HIS A 330 UNP Q8NNY3 EXPRESSION TAG SEQADV 3JVD HIS A 331 UNP Q8NNY3 EXPRESSION TAG SEQADV 3JVD HIS A 332 UNP Q8NNY3 EXPRESSION TAG SEQADV 3JVD HIS A 333 UNP Q8NNY3 EXPRESSION TAG SEQADV 3JVD MET B 1 UNP Q8NNY3 EXPRESSION TAG SEQADV 3JVD SER B 2 UNP Q8NNY3 EXPRESSION TAG SEQADV 3JVD LEU B 3 UNP Q8NNY3 EXPRESSION TAG SEQADV 3JVD GLU B 326 UNP Q8NNY3 EXPRESSION TAG SEQADV 3JVD GLY B 327 UNP Q8NNY3 EXPRESSION TAG SEQADV 3JVD HIS B 328 UNP Q8NNY3 EXPRESSION TAG SEQADV 3JVD HIS B 329 UNP Q8NNY3 EXPRESSION TAG SEQADV 3JVD HIS B 330 UNP Q8NNY3 EXPRESSION TAG SEQADV 3JVD HIS B 331 UNP Q8NNY3 EXPRESSION TAG SEQADV 3JVD HIS B 332 UNP Q8NNY3 EXPRESSION TAG SEQADV 3JVD HIS B 333 UNP Q8NNY3 EXPRESSION TAG SEQRES 1 A 333 MET SER LEU SER ALA LYS SER SER LEU LYS GLU VAL ALA SEQRES 2 A 333 GLU LEU ALA GLY VAL GLY TYR ALA THR ALA SER ARG ALA SEQRES 3 A 333 LEU SER GLY LYS GLY TYR VAL SER PRO GLN THR ARG GLU SEQRES 4 A 333 LYS VAL GLN ALA ALA ALA LYS GLU LEU ASN TYR VAL PRO SEQRES 5 A 333 ASN GLN LEU ALA LYS ALA LEU ARG GLU HIS ARG SER ALA SEQRES 6 A 333 LEU VAL GLY VAL ILE VAL PRO ASP LEU SER ASN GLU TYR SEQRES 7 A 333 TYR SER GLU SER LEU GLN THR ILE GLN GLN ASP LEU LYS SEQRES 8 A 333 ALA ALA GLY TYR GLN MET LEU VAL ALA GLU ALA ASN SER SEQRES 9 A 333 VAL GLN ALA GLN ASP VAL VAL MET GLU SER LEU ILE SER SEQRES 10 A 333 ILE GLN ALA ALA GLY ILE ILE HIS VAL PRO VAL VAL GLY SEQRES 11 A 333 SER ILE ALA PRO GLU GLY ILE PRO MET VAL GLN LEU THR SEQRES 12 A 333 ARG GLY GLU LEU GLY PRO GLY PHE PRO ARG VAL LEU CYS SEQRES 13 A 333 ASP ASP GLU ALA GLY PHE PHE GLN LEU THR GLU SER VAL SEQRES 14 A 333 LEU GLY GLY SER GLY MET ASN ILE ALA ALA LEU VAL GLY SEQRES 15 A 333 GLU GLU SER LEU SER THR THR GLN GLU ARG MET ARG GLY SEQRES 16 A 333 ILE SER HIS ALA ALA SER ILE TYR GLY ALA GLU VAL THR SEQRES 17 A 333 PHE HIS PHE GLY HIS TYR SER VAL GLU SER GLY GLU GLU SEQRES 18 A 333 MET ALA GLN VAL VAL PHE ASN ASN GLY LEU PRO ASP ALA SEQRES 19 A 333 LEU ILE VAL ALA SER PRO ARG LEU MET ALA GLY VAL MET SEQRES 20 A 333 ARG ALA PHE THR ARG LEU ASN VAL ARG VAL PRO HIS ASP SEQRES 21 A 333 VAL VAL ILE GLY GLY TYR ASP ASP PRO GLU TRP TYR SER SEQRES 22 A 333 PHE VAL GLY ALA GLY ILE THR THR PHE VAL PRO PRO HIS SEQRES 23 A 333 GLU GLU MET GLY LYS GLU ALA VAL ARG LEU LEU VAL ASP SEQRES 24 A 333 LEU ILE GLU ASN PRO GLU LEU PRO THR GLY ASP VAL VAL SEQRES 25 A 333 LEU GLN GLY GLN VAL ILE LEU ARG GLY SER SER THR HIS SEQRES 26 A 333 GLU GLY HIS HIS HIS HIS HIS HIS SEQRES 1 B 333 MET SER LEU SER ALA LYS SER SER LEU LYS GLU VAL ALA SEQRES 2 B 333 GLU LEU ALA GLY VAL GLY TYR ALA THR ALA SER ARG ALA SEQRES 3 B 333 LEU SER GLY LYS GLY TYR VAL SER PRO GLN THR ARG GLU SEQRES 4 B 333 LYS VAL GLN ALA ALA ALA LYS GLU LEU ASN TYR VAL PRO SEQRES 5 B 333 ASN GLN LEU ALA LYS ALA LEU ARG GLU HIS ARG SER ALA SEQRES 6 B 333 LEU VAL GLY VAL ILE VAL PRO ASP LEU SER ASN GLU TYR SEQRES 7 B 333 TYR SER GLU SER LEU GLN THR ILE GLN GLN ASP LEU LYS SEQRES 8 B 333 ALA ALA GLY TYR GLN MET LEU VAL ALA GLU ALA ASN SER SEQRES 9 B 333 VAL GLN ALA GLN ASP VAL VAL MET GLU SER LEU ILE SER SEQRES 10 B 333 ILE GLN ALA ALA GLY ILE ILE HIS VAL PRO VAL VAL GLY SEQRES 11 B 333 SER ILE ALA PRO GLU GLY ILE PRO MET VAL GLN LEU THR SEQRES 12 B 333 ARG GLY GLU LEU GLY PRO GLY PHE PRO ARG VAL LEU CYS SEQRES 13 B 333 ASP ASP GLU ALA GLY PHE PHE GLN LEU THR GLU SER VAL SEQRES 14 B 333 LEU GLY GLY SER GLY MET ASN ILE ALA ALA LEU VAL GLY SEQRES 15 B 333 GLU GLU SER LEU SER THR THR GLN GLU ARG MET ARG GLY SEQRES 16 B 333 ILE SER HIS ALA ALA SER ILE TYR GLY ALA GLU VAL THR SEQRES 17 B 333 PHE HIS PHE GLY HIS TYR SER VAL GLU SER GLY GLU GLU SEQRES 18 B 333 MET ALA GLN VAL VAL PHE ASN ASN GLY LEU PRO ASP ALA SEQRES 19 B 333 LEU ILE VAL ALA SER PRO ARG LEU MET ALA GLY VAL MET SEQRES 20 B 333 ARG ALA PHE THR ARG LEU ASN VAL ARG VAL PRO HIS ASP SEQRES 21 B 333 VAL VAL ILE GLY GLY TYR ASP ASP PRO GLU TRP TYR SER SEQRES 22 B 333 PHE VAL GLY ALA GLY ILE THR THR PHE VAL PRO PRO HIS SEQRES 23 B 333 GLU GLU MET GLY LYS GLU ALA VAL ARG LEU LEU VAL ASP SEQRES 24 B 333 LEU ILE GLU ASN PRO GLU LEU PRO THR GLY ASP VAL VAL SEQRES 25 B 333 LEU GLN GLY GLN VAL ILE LEU ARG GLY SER SER THR HIS SEQRES 26 B 333 GLU GLY HIS HIS HIS HIS HIS HIS HET SO4 A 334 5 HET SO4 A 335 5 HET SO4 A 336 5 HET GOL B 334 6 HETNAM SO4 SULFATE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 SO4 3(O4 S 2-) FORMUL 6 GOL C3 H8 O3 FORMUL 7 HOH *74(H2 O) HELIX 1 1 ASN A 76 GLY A 94 1 19 HELIX 2 2 SER A 104 GLN A 119 1 16 HELIX 3 3 ASP A 157 LEU A 170 1 14 HELIX 4 4 LEU A 186 TYR A 203 1 18 HELIX 5 5 SER A 215 ASN A 229 1 15 HELIX 6 6 SER A 239 LEU A 253 1 15 HELIX 7 7 PRO A 269 VAL A 275 5 7 HELIX 8 8 PRO A 285 ASN A 303 1 19 HELIX 9 9 ARG A 320 THR A 324 5 5 HELIX 10 10 ASN B 76 GLU B 81 1 6 HELIX 11 11 SER B 82 ALA B 93 1 12 HELIX 12 12 SER B 104 ILE B 118 1 15 HELIX 13 13 ASP B 157 LEU B 170 1 14 HELIX 14 14 LEU B 186 TYR B 203 1 18 HELIX 15 15 SER B 215 ASN B 229 1 15 HELIX 16 16 SER B 239 LEU B 253 1 15 HELIX 17 17 PRO B 269 PHE B 274 5 6 HELIX 18 18 PRO B 285 ASN B 303 1 19 HELIX 19 19 ARG B 320 THR B 324 5 5 SHEET 1 A 6 GLN A 96 GLU A 101 0 SHEET 2 A 6 LEU A 66 VAL A 71 1 N VAL A 67 O GLN A 96 SHEET 3 A 6 GLY A 122 HIS A 125 1 O ILE A 124 N GLY A 68 SHEET 4 A 6 MET A 139 LEU A 142 1 O LEU A 142 N HIS A 125 SHEET 5 A 6 ARG A 153 CYS A 156 1 O VAL A 154 N GLN A 141 SHEET 6 A 6 VAL A 311 LEU A 313 1 O VAL A 311 N LEU A 155 SHEET 1 B 6 GLU A 206 PHE A 211 0 SHEET 2 B 6 ASN A 176 VAL A 181 1 N ALA A 179 O HIS A 210 SHEET 3 B 6 ALA A 234 VAL A 237 1 O ILE A 236 N LEU A 180 SHEET 4 B 6 VAL A 262 TYR A 266 1 O GLY A 264 N LEU A 235 SHEET 5 B 6 THR A 280 VAL A 283 1 O THR A 280 N GLY A 265 SHEET 6 B 6 GLN A 316 ILE A 318 -1 O GLN A 316 N VAL A 283 SHEET 1 C 6 GLN B 96 GLU B 101 0 SHEET 2 C 6 LEU B 66 VAL B 71 1 N VAL B 67 O GLN B 96 SHEET 3 C 6 GLY B 122 HIS B 125 1 O ILE B 124 N GLY B 68 SHEET 4 C 6 MET B 139 LEU B 142 1 O LEU B 142 N HIS B 125 SHEET 5 C 6 ARG B 153 CYS B 156 1 O VAL B 154 N GLN B 141 SHEET 6 C 6 VAL B 311 LEU B 313 1 O LEU B 313 N LEU B 155 SHEET 1 D 6 GLU B 206 PHE B 211 0 SHEET 2 D 6 ASN B 176 VAL B 181 1 N ALA B 179 O HIS B 210 SHEET 3 D 6 ALA B 234 VAL B 237 1 O ILE B 236 N LEU B 180 SHEET 4 D 6 VAL B 262 TYR B 266 1 O GLY B 264 N VAL B 237 SHEET 5 D 6 THR B 280 VAL B 283 1 O THR B 280 N GLY B 265 SHEET 6 D 6 GLN B 316 ILE B 318 -1 O GLN B 316 N VAL B 283 CISPEP 1 VAL A 257 PRO A 258 0 7.83 CISPEP 2 VAL B 257 PRO B 258 0 4.13 SITE 1 AC1 3 ARG A 248 SER B 273 ARG B 320 SITE 1 AC2 3 SER A 273 ARG A 320 ARG B 248 SITE 1 AC3 2 ARG A 256 HOH A 379 SITE 1 AC4 2 HIS B 210 PHE B 211 CRYST1 91.970 91.970 285.453 90.00 90.00 120.00 P 65 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010873 0.006278 0.000000 0.00000 SCALE2 0.000000 0.012555 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003503 0.00000