HEADER HYDROLASE 16-SEP-09 3JVI TITLE PRODUCT STATE MIMIC CRYSTAL STRUCTURE OF PROTEIN TYROSINE PHOSPHATASE TITLE 2 FROM ENTAMOEBA HISTOLYTICA COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN TYROSINE PHOSPHATASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ENTAMOEBA HISTOLYTICA; SOURCE 3 ORGANISM_TAXID: 294381; SOURCE 4 STRAIN: HM-1:IMSS; SOURCE 5 GENE: EHI_153650; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: AVA0421 KEYWDS NIAID, SSGCID, SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS KEYWDS 2 DISEASE, PARASITIC PROTOZOAN, DYSENTERY, LIVER ABSCESS, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 6 06-SEP-23 3JVI 1 REMARK SEQADV REVDAT 5 01-NOV-17 3JVI 1 REMARK REVDAT 4 09-APR-14 3JVI 1 JRNL REVDAT 3 12-MAR-14 3JVI 1 JRNL REVDAT 2 13-JUL-11 3JVI 1 VERSN REVDAT 1 22-SEP-09 3JVI 0 JRNL AUTH A.S.LINFORD,N.M.JIANG,T.E.EDWARDS,N.E.SHERMAN, JRNL AUTH 2 W.C.VAN VOORHIS,L.J.STEWART,P.J.MYLER,B.L.STAKER,W.A.PETRI JRNL TITL CRYSTAL STRUCTURE AND PUTATIVE SUBSTRATE IDENTIFICATION FOR JRNL TITL 2 THE ENTAMOEBA HISTOLYTICA LOW MOLECULAR WEIGHT TYROSINE JRNL TITL 3 PHOSPHATASE. JRNL REF MOL.BIOCHEM.PARASITOL. V. 193 33 2014 JRNL REFN ISSN 0166-6851 JRNL PMID 24548880 JRNL DOI 10.1016/J.MOLBIOPARA.2014.01.003 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.64 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.1 REMARK 3 NUMBER OF REFLECTIONS : 12911 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.206 REMARK 3 R VALUE (WORKING SET) : 0.204 REMARK 3 FREE R VALUE : 0.249 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 644 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 874 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.55 REMARK 3 BIN R VALUE (WORKING SET) : 0.2600 REMARK 3 BIN FREE R VALUE SET COUNT : 41 REMARK 3 BIN FREE R VALUE : 0.3610 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1235 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 5 REMARK 3 SOLVENT ATOMS : 144 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 13.91 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 3.03000 REMARK 3 B22 (A**2) : 3.03000 REMARK 3 B33 (A**2) : -6.06000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.037 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.033 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.079 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.859 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.942 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.909 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1293 ; 0.012 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1749 ; 1.273 ; 1.967 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 164 ; 5.272 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 62 ;30.639 ;24.839 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 239 ;15.100 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 7 ;14.868 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 193 ; 0.098 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 976 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 794 ; 0.761 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1289 ; 1.422 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 499 ; 2.115 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 456 ; 3.249 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 44 REMARK 3 ORIGIN FOR THE GROUP (A): -4.1394 20.3012 -20.0429 REMARK 3 T TENSOR REMARK 3 T11: 0.0216 T22: 0.0327 REMARK 3 T33: 0.0216 T12: 0.0024 REMARK 3 T13: -0.0015 T23: -0.0045 REMARK 3 L TENSOR REMARK 3 L11: 0.8082 L22: 0.9054 REMARK 3 L33: 1.3435 L12: 0.3900 REMARK 3 L13: -0.0699 L23: -0.3937 REMARK 3 S TENSOR REMARK 3 S11: -0.0116 S12: -0.0374 S13: 0.0027 REMARK 3 S21: -0.0525 S22: 0.0701 S23: -0.0213 REMARK 3 S31: -0.0863 S32: -0.0532 S33: -0.0585 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 45 A 67 REMARK 3 ORIGIN FOR THE GROUP (A): 5.7989 28.2976 -22.3694 REMARK 3 T TENSOR REMARK 3 T11: 0.0510 T22: 0.0149 REMARK 3 T33: 0.0561 T12: -0.0109 REMARK 3 T13: 0.0346 T23: -0.0125 REMARK 3 L TENSOR REMARK 3 L11: 0.6787 L22: 2.5898 REMARK 3 L33: 4.5801 L12: 0.7609 REMARK 3 L13: 0.1075 L23: 0.9593 REMARK 3 S TENSOR REMARK 3 S11: 0.0996 S12: -0.0588 S13: 0.1486 REMARK 3 S21: -0.0640 S22: -0.1056 S23: 0.0240 REMARK 3 S31: -0.3252 S32: 0.0957 S33: 0.0060 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 68 A 125 REMARK 3 ORIGIN FOR THE GROUP (A): -1.3527 11.6298 -12.7157 REMARK 3 T TENSOR REMARK 3 T11: 0.0303 T22: 0.0245 REMARK 3 T33: 0.0340 T12: -0.0095 REMARK 3 T13: -0.0088 T23: -0.0170 REMARK 3 L TENSOR REMARK 3 L11: 0.5328 L22: 1.0171 REMARK 3 L33: 2.0241 L12: -0.0729 REMARK 3 L13: -0.4386 L23: -0.7351 REMARK 3 S TENSOR REMARK 3 S11: 0.0129 S12: -0.0415 S13: -0.0331 REMARK 3 S21: -0.0261 S22: 0.0097 S23: -0.0209 REMARK 3 S31: 0.1814 S32: -0.0073 S33: -0.0226 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 128 A 157 REMARK 3 ORIGIN FOR THE GROUP (A): -1.0662 12.1749 -26.5896 REMARK 3 T TENSOR REMARK 3 T11: 0.1271 T22: 0.0092 REMARK 3 T33: 0.0245 T12: -0.0071 REMARK 3 T13: 0.0278 T23: -0.0112 REMARK 3 L TENSOR REMARK 3 L11: 5.0300 L22: 1.3513 REMARK 3 L33: 1.1931 L12: 2.3278 REMARK 3 L13: -1.4434 L23: -0.8852 REMARK 3 S TENSOR REMARK 3 S11: -0.1812 S12: 0.0924 S13: -0.1969 REMARK 3 S21: -0.2596 S22: 0.0530 S23: -0.1282 REMARK 3 S31: 0.2384 S32: -0.0450 S33: 0.1282 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1. HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. 2. U VALUES: RESIDUAL ONLY. REMARK 4 REMARK 4 3JVI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-SEP-09. REMARK 100 THE DEPOSITION ID IS D_1000055211. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-AUG-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU FR-E+ SUPERBRIGHT REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU SATURN 944+ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12964 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.2 REMARK 200 DATA REDUNDANCY : 7.600 REMARK 200 R MERGE (I) : 0.06200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 22.8400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.86 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.60 REMARK 200 R MERGE FOR SHELL (I) : 0.25400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 5.710 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.1.4 REMARK 200 STARTING MODEL: PDB ENTRY 3IDO REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 32.95 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.83 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: EMERALD BIOSYSTEMS WIZARD II SCREEN REMARK 280 CONDITION 41, 2.0 M AMMONIUM SULFATE, 0.1 M TRIS-HCL PH 7.0, 0.2 REMARK 280 M LITHIUM SULFATE, 26.1 MG/ML PROTEIN. CRYSTAL TRACKING ID REMARK 280 203693H5, EXPRESSION TAG REMOVED WITH 3C PROTEASE, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 66.65800 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 22.49750 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 22.49750 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 99.98700 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 22.49750 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 22.49750 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 33.32900 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 22.49750 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 22.49750 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 99.98700 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 22.49750 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 22.49750 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 33.32900 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 66.65800 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -3 REMARK 465 PRO A -2 REMARK 465 GLY A -1 REMARK 465 TYR A 126 REMARK 465 GLY A 127 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 33 CG CD CE NZ REMARK 470 TYR A 44 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLU A 46 CG CD OE1 OE2 REMARK 470 LYS A 117 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 SG CYS A 7 O2 SO4 A 201 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLN A 101 CB GLN A 101 CG -0.210 REMARK 500 TYR A 102 CD1 TYR A 102 CE1 -0.092 REMARK 500 GLU A 120 CD GLU A 120 OE1 -0.077 REMARK 500 GLU A 144 CD GLU A 144 OE2 -0.118 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 7 -156.86 -137.44 REMARK 500 CYS A 12 -77.52 -125.03 REMARK 500 PRO A 124 35.11 -60.36 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 201 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3ILY RELATED DB: PDB REMARK 900 APO CRYSTAL STRUCTURE OF PROTEIN TYROSINE PHOSPHATASE FROM REMARK 900 ENTAMOEBA HISTOLYTICA FEATURING A DISORDERED ACTIVE SITE REMARK 900 RELATED ID: 3JS5 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF PROTEIN TYROSINE PHOSPHATASE FROM ENTAMOEBA REMARK 900 HISTOLYTICA WITH PTR MIMIC HEPES IN THE ACTIVE SITE. HIGH REMARK 900 RESOLUTION, ALTERNATIVE CRYSTAL FORM WITH 1 MOLECULE IN ASYMMETRIC REMARK 900 UNIT, ENZYME-SUBSTRATE COMPLEX MIMIC REMARK 900 RELATED ID: SSGCID-ENHIA.01424.B RELATED DB: TARGETDB DBREF 3JVI A 1 157 UNP C4LSE7 C4LSE7_ENTHI 1 157 SEQADV 3JVI GLY A -3 UNP C4LSE7 EXPRESSION TAG SEQADV 3JVI PRO A -2 UNP C4LSE7 EXPRESSION TAG SEQADV 3JVI GLY A -1 UNP C4LSE7 EXPRESSION TAG SEQADV 3JVI SER A 0 UNP C4LSE7 EXPRESSION TAG SEQRES 1 A 161 GLY PRO GLY SER MET LYS LEU LEU PHE VAL CYS LEU GLY SEQRES 2 A 161 ASN ILE CYS ARG SER PRO ALA ALA GLU ALA VAL MET LYS SEQRES 3 A 161 LYS VAL ILE GLN ASN HIS HIS LEU THR GLU LYS TYR ILE SEQRES 4 A 161 CYS ASP SER ALA GLY THR CYS SER TYR HIS GLU GLY GLN SEQRES 5 A 161 GLN ALA ASP SER ARG MET ARG LYS VAL GLY LYS SER ARG SEQRES 6 A 161 GLY TYR GLN VAL ASP SER ILE SER ARG PRO VAL VAL SER SEQRES 7 A 161 SER ASP PHE LYS ASN PHE ASP TYR ILE PHE ALA MET ASP SEQRES 8 A 161 ASN ASP ASN TYR TYR GLU LEU LEU ASP ARG CYS PRO GLU SEQRES 9 A 161 GLN TYR LYS GLN LYS ILE PHE LYS MET VAL ASP PHE CYS SEQRES 10 A 161 THR THR ILE LYS THR THR GLU VAL PRO ASP PRO TYR TYR SEQRES 11 A 161 GLY GLY GLU LYS GLY PHE HIS ARG VAL ILE ASP ILE LEU SEQRES 12 A 161 GLU ASP ALA CYS GLU ASN LEU ILE ILE LYS LEU GLU GLU SEQRES 13 A 161 GLY LYS LEU ILE ASN HET SO4 A 201 5 HETNAM SO4 SULFATE ION FORMUL 2 SO4 O4 S 2- FORMUL 3 HOH *144(H2 O) HELIX 1 1 CYS A 12 HIS A 28 1 17 HELIX 2 2 LEU A 30 GLU A 32 5 3 HELIX 3 3 ASP A 51 ARG A 61 1 11 HELIX 4 4 VAL A 73 PHE A 80 1 8 HELIX 5 5 ASP A 87 CYS A 98 1 12 HELIX 6 6 PRO A 99 GLN A 104 5 6 HELIX 7 7 VAL A 110 CYS A 113 5 4 HELIX 8 8 GLY A 128 GLY A 153 1 26 SHEET 1 A 4 TYR A 34 GLY A 40 0 SHEET 2 A 4 MET A 1 CYS A 7 1 N LEU A 3 O ILE A 35 SHEET 3 A 4 TYR A 82 ALA A 85 1 O PHE A 84 N VAL A 6 SHEET 4 A 4 ILE A 106 LYS A 108 1 O PHE A 107 N ALA A 85 SITE 1 AC1 10 CYS A 7 LEU A 8 GLY A 9 ASN A 10 SITE 2 AC1 10 ILE A 11 CYS A 12 ARG A 13 SER A 14 SITE 3 AC1 10 HOH A 288 HOH A 289 CRYST1 44.995 44.995 133.316 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022225 0.000000 0.000000 0.00000 SCALE2 0.000000 0.022225 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007501 0.00000