HEADER LYASE 18-SEP-09 3JWA TITLE CRYSTAL STRUCTURE OF L-METHIONINE GAMMA-LYASE FROM CITROBACTER TITLE 2 FREUNDII WITH METHIONINE PHOSPHINATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: METHIONINE GAMMA-LYASE; COMPND 3 CHAIN: A; COMPND 4 EC: 4.4.1.11; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CITROBACTER FREUNDII; SOURCE 3 ORGANISM_TAXID: 546; SOURCE 4 GENE: MEGL; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET-MGL KEYWDS PYRIDOXAL-5'-PHOSPHATE, PLP-DEPENDENT ENZYME, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR S.V.REVTOVISH,A.D.NIKULIN,E.A.MOROZOVA,T.V.DEMIDKINA REVDAT 5 22-NOV-23 3JWA 1 REMARK REVDAT 4 06-SEP-23 3JWA 1 REMARK REVDAT 3 21-OCT-20 3JWA 1 REMARK LINK REVDAT 2 05-NOV-14 3JWA 1 JRNL VERSN REVDAT 1 08-SEP-10 3JWA 0 JRNL AUTH S.V.REVTOVICH,E.A.MOROZOVA,E.N.KHURS,L.N.ZAKOMIRDINA, JRNL AUTH 2 A.D.NIKULIN,T.V.DEMIDKINA,R.M.KHOMUTOV JRNL TITL THREE-DIMENSIONAL STRUCTURES OF NONCOVALENT COMPLEXES OF JRNL TITL 2 CITROBACTER FREUNDII METHIONINE GAMMA-LYASE WITH SUBSTRATES. JRNL REF BIOCHEMISTRY MOSC. V. 76 564 2011 JRNL REFN ISSN 0006-2979 JRNL PMID 21639836 JRNL DOI 10.1134/S0006297911050063 REMARK 2 REMARK 2 RESOLUTION. 1.45 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.4_4) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.45 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 2.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 77926 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.143 REMARK 3 R VALUE (WORKING SET) : 0.141 REMARK 3 FREE R VALUE : 0.182 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3897 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 18.6599 - 4.3846 0.95 2690 142 0.1824 0.2209 REMARK 3 2 4.3846 - 3.4876 0.99 2707 143 0.1299 0.1657 REMARK 3 3 3.4876 - 3.0489 0.99 2700 142 0.1337 0.1602 REMARK 3 4 3.0489 - 2.7712 0.99 2667 140 0.1313 0.1558 REMARK 3 5 2.7712 - 2.5731 0.99 2647 139 0.1261 0.1830 REMARK 3 6 2.5731 - 2.4217 0.99 2678 141 0.1234 0.1551 REMARK 3 7 2.4217 - 2.3007 0.99 2637 139 0.1190 0.1519 REMARK 3 8 2.3007 - 2.2007 0.99 2657 140 0.1096 0.1616 REMARK 3 9 2.2007 - 2.1161 0.99 2623 138 0.1097 0.1632 REMARK 3 10 2.1161 - 2.0431 0.99 2655 140 0.1143 0.1562 REMARK 3 11 2.0431 - 1.9793 1.00 2636 138 0.1190 0.1718 REMARK 3 12 1.9793 - 1.9228 1.00 2649 140 0.1198 0.1624 REMARK 3 13 1.9228 - 1.8722 1.00 2643 139 0.1170 0.1642 REMARK 3 14 1.8722 - 1.8266 1.00 2623 138 0.1213 0.1733 REMARK 3 15 1.8266 - 1.7851 1.00 2655 140 0.1230 0.1780 REMARK 3 16 1.7851 - 1.7472 1.00 2641 139 0.1166 0.1693 REMARK 3 17 1.7472 - 1.7122 1.00 2635 139 0.1238 0.1648 REMARK 3 18 1.7122 - 1.6799 1.00 2657 139 0.1248 0.1981 REMARK 3 19 1.6799 - 1.6500 1.00 2614 138 0.1366 0.1623 REMARK 3 20 1.6500 - 1.6220 1.00 2663 140 0.1326 0.1758 REMARK 3 21 1.6220 - 1.5959 1.00 2653 140 0.1431 0.1757 REMARK 3 22 1.5959 - 1.5713 1.00 2580 136 0.1438 0.2122 REMARK 3 23 1.5713 - 1.5482 1.00 2657 139 0.1565 0.2438 REMARK 3 24 1.5482 - 1.5264 1.00 2618 138 0.1698 0.1902 REMARK 3 25 1.5264 - 1.5058 0.99 2649 140 0.1843 0.2465 REMARK 3 26 1.5058 - 1.4862 1.00 2589 136 0.1970 0.2485 REMARK 3 27 1.4862 - 1.4677 0.99 2644 139 0.2114 0.2483 REMARK 3 28 1.4677 - 1.4500 1.00 2562 135 0.2721 0.3011 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.44 REMARK 3 B_SOL : 80.27 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.000 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 21.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 6.09020 REMARK 3 B22 (A**2) : -1.55260 REMARK 3 B33 (A**2) : -4.53770 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 3216 REMARK 3 ANGLE : 1.004 4375 REMARK 3 CHIRALITY : 0.067 505 REMARK 3 PLANARITY : 0.005 567 REMARK 3 DIHEDRAL : 15.939 1209 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3JWA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-SEP-09. REMARK 100 THE DEPOSITION ID IS D_1000055239. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-SEP-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : EMBL/DESY, HAMBURG REMARK 200 BEAMLINE : BW7B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.843 REMARK 200 MONOCHROMATOR : SI(111), HORIZONTALLY FOCUSSING REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 345 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 77926 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.450 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 200 DATA REDUNDANCY : 4.200 REMARK 200 R MERGE (I) : 0.04000 REMARK 200 R SYM (I) : 0.04000 REMARK 200 FOR THE DATA SET : 18.9300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.45 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.49 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.6 REMARK 200 DATA REDUNDANCY IN SHELL : 4.10 REMARK 200 R MERGE FOR SHELL (I) : 0.28300 REMARK 200 R SYM FOR SHELL (I) : 0.28800 REMARK 200 FOR SHELL : 4.950 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 2RFV REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.79 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.55 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 5% MMEPEG 2000, 50MM TRIS-HCL, 0.2MM REMARK 280 PLP, 0.25% DTT, PH 8.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 303K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 28.21000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 61.50500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 63.50500 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 28.21000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 61.50500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 63.50500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 28.21000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 61.50500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 63.50500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 28.21000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 61.50500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 63.50500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 27990 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 45340 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -78.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 4 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 408 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 587 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 630 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 654 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 699 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 PHE A 398 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 51 31.69 71.50 REMARK 500 ILE A 57 -48.73 -133.14 REMARK 500 SER A 190 160.59 67.99 REMARK 500 LLP A 210 -120.72 -89.47 REMARK 500 VAL A 236 -58.88 -122.57 REMARK 500 ILE A 241 -63.10 -94.93 REMARK 500 SER A 339 176.19 86.03 REMARK 500 MET A 353 -100.96 -121.74 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPJ A 399 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG A 400 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG A 404 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2RFV RELATED DB: PDB REMARK 900 HIGH RESOLUTION STRUCTURE OF L-METHIONINE GAMMA-LYASE FROM REMARK 900 CITROBACTER FREUNDII REMARK 900 RELATED ID: 1Y4I RELATED DB: PDB REMARK 900 STRUCTURE OF L-METHIONINE GAMMA-LYASE FROM CITROBACTER FREUNDII REMARK 900 RELATED ID: 2O7C RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF L-METHIONINE-LYASE FROM PSEUDOMONAS PUTIDA REMARK 900 RELATED ID: 1UKJ RELATED DB: PDB REMARK 900 DETAILED STRUCTURE OF L-METHIONINE -LYASE FROM PSEUDOMONAS PUTIDA REMARK 900 RELATED ID: 1E5E RELATED DB: PDB REMARK 900 METHIONINE GAMMA-LYASE (MGL) FROM TRICHOMONAS VAGINALIS IN COMPLEX REMARK 900 WITH PROPARGYLGLYCINE REMARK 900 RELATED ID: 3JW9 RELATED DB: PDB REMARK 900 RELATED ID: 3JWB RELATED DB: PDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 AUTHORS STATE THERE IS AN ERROR IN THE DATABASE SEQUENCE. DBREF 3JWA A 1 398 UNP Q84AR1 Q84AR1_CITFR 1 398 SEQADV 3JWA PHE A 133 UNP Q84AR1 LEU 133 SEE REMARK 999 SEQADV 3JWA ALA A 137 UNP Q84AR1 GLY 137 SEE REMARK 999 SEQADV 3JWA SER A 132 UNP Q84AR1 ARG 132 SEE REMARK 999 SEQRES 1 A 398 MET SER ASP CSO ARG THR TYR GLY PHE ASN THR GLN ILE SEQRES 2 A 398 VAL HIS ALA GLY GLN GLN PRO ASP PRO SER THR GLY ALA SEQRES 3 A 398 LEU SER THR PRO ILE PHE GLN THR SER THR PHE VAL PHE SEQRES 4 A 398 ASP SER ALA GLU GLN GLY ALA ALA ARG PHE ALA LEU GLU SEQRES 5 A 398 GLU SER GLY TYR ILE TYR THR ARG LEU GLY ASN PRO THR SEQRES 6 A 398 THR ASP ALA LEU GLU LYS LYS LEU ALA VAL LEU GLU ARG SEQRES 7 A 398 GLY GLU ALA GLY LEU ALA THR ALA SER GLY ILE SER ALA SEQRES 8 A 398 ILE THR THR THR LEU LEU THR LEU CYS GLN GLN GLY ASP SEQRES 9 A 398 HIS ILE VAL SER ALA SER ALA ILE TYR GLY CYS THR HIS SEQRES 10 A 398 ALA PHE LEU SER HIS SER MET PRO LYS PHE GLY ILE ASN SEQRES 11 A 398 VAL SER PHE VAL ASP ALA ALA LYS PRO GLU GLU ILE ARG SEQRES 12 A 398 ALA ALA MET ARG PRO GLU THR LYS VAL VAL TYR ILE GLU SEQRES 13 A 398 THR PRO ALA ASN PRO THR LEU SER LEU VAL ASP ILE GLU SEQRES 14 A 398 THR VAL ALA GLY ILE ALA HIS GLN GLN GLY ALA LEU LEU SEQRES 15 A 398 VAL VAL ASP ASN THR PHE MET SER PRO TYR CYS GLN GLN SEQRES 16 A 398 PRO LEU GLN LEU GLY ALA ASP ILE VAL VAL HIS SER VAL SEQRES 17 A 398 THR LLP TYR ILE ASN GLY HIS GLY ASP VAL ILE GLY GLY SEQRES 18 A 398 ILE ILE VAL GLY LYS GLN GLU PHE ILE ASP GLN ALA ARG SEQRES 19 A 398 PHE VAL GLY LEU LYS ASP ILE THR GLY GLY CYS MET SER SEQRES 20 A 398 PRO PHE ASN ALA TRP LEU THR LEU ARG GLY VAL LYS THR SEQRES 21 A 398 LEU GLY ILE ARG MET GLU ARG HIS CYS GLU ASN ALA LEU SEQRES 22 A 398 LYS ILE ALA ARG PHE LEU GLU GLY HIS PRO SER ILE THR SEQRES 23 A 398 ARG VAL TYR TYR PRO GLY LEU SER SER HIS PRO GLN TYR SEQRES 24 A 398 GLU LEU GLY GLN ARG GLN MET SER LEU PRO GLY GLY ILE SEQRES 25 A 398 ILE SER PHE GLU ILE ALA GLY GLY LEU GLU ALA GLY ARG SEQRES 26 A 398 ARG MET ILE ASN SER VAL GLU LEU CYS LEU LEU ALA VAL SEQRES 27 A 398 SER LEU GLY ASP THR GLU THR LEU ILE GLN HIS PRO ALA SEQRES 28 A 398 SER MET THR HIS SER PRO VAL ALA PRO GLU GLU ARG LEU SEQRES 29 A 398 LYS ALA GLY ILE THR ASP GLY LEU ILE ARG LEU SER VAL SEQRES 30 A 398 GLY LEU GLU ASP PRO GLU ASP ILE ILE ASN ASP LEU GLU SEQRES 31 A 398 HIS ALA ILE ARG LYS ALA THR PHE MODRES 3JWA CSO A 4 CYS S-HYDROXYCYSTEINE MODRES 3JWA LLP A 210 LYS HET CSO A 4 7 HET LLP A 210 24 HET MPJ A 399 9 HET PEG A 400 7 HET PEG A 401 7 HET PEG A 402 7 HET PEG A 403 7 HET PEG A 404 7 HETNAM CSO S-HYDROXYCYSTEINE HETNAM LLP (2S)-2-AMINO-6-[[3-HYDROXY-2-METHYL-5- HETNAM 2 LLP (PHOSPHONOOXYMETHYL)PYRIDIN-4- HETNAM 3 LLP YL]METHYLIDENEAMINO]HEXANOIC ACID HETNAM MPJ (1-AMINO-3-METHYLSULFANYL-PROPYL)-PHOSPHINIC ACID HETNAM PEG DI(HYDROXYETHYL)ETHER HETSYN LLP N'-PYRIDOXYL-LYSINE-5'-MONOPHOSPHATE HETSYN MPJ METHIONINE PHOSPHINATE FORMUL 1 CSO C3 H7 N O3 S FORMUL 1 LLP C14 H22 N3 O7 P FORMUL 2 MPJ C4 H12 N O2 P S FORMUL 3 PEG 5(C4 H10 O3) FORMUL 8 HOH *299(H2 O) HELIX 1 1 ASP A 3 TYR A 7 5 5 HELIX 2 2 GLY A 8 ALA A 16 1 9 HELIX 3 3 SER A 41 ALA A 50 1 10 HELIX 4 4 ASN A 63 ARG A 78 1 16 HELIX 5 5 SER A 87 CYS A 100 1 14 HELIX 6 6 TYR A 113 PHE A 127 1 15 HELIX 7 7 LYS A 138 MET A 146 1 9 HELIX 8 8 ASP A 167 GLN A 178 1 12 HELIX 9 9 GLN A 195 GLY A 200 5 6 HELIX 10 10 LYS A 226 VAL A 236 1 11 HELIX 11 11 VAL A 236 ILE A 241 1 6 HELIX 12 12 SER A 247 LYS A 259 1 13 HELIX 13 13 THR A 260 GLY A 281 1 22 HELIX 14 14 GLN A 298 MET A 306 1 9 HELIX 15 15 GLY A 319 ASN A 329 1 11 HELIX 16 16 ALA A 359 ALA A 366 1 8 HELIX 17 17 ASP A 381 THR A 397 1 17 SHEET 1 A 7 ALA A 81 THR A 85 0 SHEET 2 A 7 GLY A 221 GLY A 225 -1 O GLY A 221 N THR A 85 SHEET 3 A 7 ILE A 203 SER A 207 -1 N VAL A 204 O VAL A 224 SHEET 4 A 7 LEU A 181 ASP A 185 1 N VAL A 184 O ILE A 203 SHEET 5 A 7 THR A 150 GLU A 156 1 N VAL A 153 O VAL A 183 SHEET 6 A 7 HIS A 105 ALA A 109 1 N VAL A 107 O TYR A 154 SHEET 7 A 7 ASN A 130 VAL A 134 1 O SER A 132 N SER A 108 SHEET 1 B 5 ILE A 285 TYR A 289 0 SHEET 2 B 5 ILE A 312 ILE A 317 -1 O SER A 314 N TYR A 289 SHEET 3 B 5 LEU A 372 SER A 376 -1 O LEU A 375 N ILE A 313 SHEET 4 B 5 LEU A 346 GLN A 348 -1 N LEU A 346 O SER A 376 SHEET 5 B 5 LEU A 335 LEU A 336 1 N LEU A 335 O ILE A 347 LINK C ASP A 3 N CSO A 4 1555 1555 1.33 LINK C CSO A 4 N ARG A 5 1555 1555 1.33 LINK C THR A 209 N LLP A 210 1555 1555 1.33 LINK C LLP A 210 N TYR A 211 1555 1555 1.33 CISPEP 1 THR A 157 PRO A 158 0 -4.49 CISPEP 2 ASN A 160 PRO A 161 0 0.11 SITE 1 AC1 10 TYR A 58 TYR A 113 CYS A 115 LLP A 210 SITE 2 AC1 10 VAL A 338 SER A 339 LEU A 340 GLN A 348 SITE 3 AC1 10 ARG A 374 HOH A 623 SITE 1 AC2 6 TYR A 192 GLN A 195 GLN A 305 MET A 306 SITE 2 AC2 6 SER A 307 HOH A 700 SITE 1 AC3 3 GLU A 270 LYS A 274 GLU A 383 SITE 1 AC4 4 TYR A 192 SER A 307 HOH A 553 HOH A 700 SITE 1 AC5 9 GLY A 302 GLN A 303 MET A 306 SER A 307 SITE 2 AC5 9 LEU A 308 PRO A 309 HOH A 531 HOH A 532 SITE 3 AC5 9 HOH A 651 SITE 1 AC6 7 HIS A 105 ASN A 130 VAL A 131 SER A 132 SITE 2 AC6 7 ARG A 147 GLU A 149 HOH A 505 CRYST1 56.420 123.010 127.010 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017724 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008129 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007873 0.00000