HEADER HYDROLASE 18-SEP-09 3JWQ TITLE CRYSTAL STRUCTURE OF CHIMERIC PDE5/PDE6 CATALYTIC DOMAIN COMPLEXED TITLE 2 WITH SILDENAFIL COMPND MOL_ID: 1; COMPND 2 MOLECULE: CGMP-SPECIFIC 3',5'-CYCLIC PHOSPHODIESTERASE CATALYTIC COMPND 3 DOMAIN, CONE CGMP-SPECIFIC 3',5'-CYCLIC PHOSPHODIESTERASE SUBUNIT COMPND 4 ALPHA CHIMERA; COMPND 5 CHAIN: A, B, C, D; COMPND 6 SYNONYM: CGMP-BINDING CGMP-SPECIFIC PHOSPHODIESTERASE, CGB-PDE, CGMP COMPND 7 PHOSPHODIESTERASE 6C; COMPND 8 EC: 3.1.4.35; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PDE5A, PDE5, PDE6C, PDEA2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS MOSTLY ALPHA, ALLOSTERIC ENZYME, CGMP, CGMP-BINDING, HYDROLASE, KEYWDS 2 MAGNESIUM, METAL-BINDING, NUCLEOTIDE-BINDING, PHOSPHOPROTEIN, CELL KEYWDS 3 MEMBRANE, LIPOPROTEIN, MEMBRANE, METHYLATION, PRENYLATION, SENSORY KEYWDS 4 TRANSDUCTION, VISION EXPDTA X-RAY DIFFRACTION AUTHOR B.BARREN,L.GAKHAR,H.MURADOV,K.K.BOYD,S.RAMASWAMY,N.O.ARTEMYEV REVDAT 6 06-SEP-23 3JWQ 1 REMARK SEQADV HETSYN LINK REVDAT 5 16-AUG-17 3JWQ 1 SOURCE REMARK REVDAT 4 13-JUL-11 3JWQ 1 VERSN REVDAT 3 01-DEC-09 3JWQ 1 JRNL REVDAT 2 20-OCT-09 3JWQ 1 HEADER REVDAT 1 13-OCT-09 3JWQ 0 JRNL AUTH B.BARREN,L.GAKHAR,H.MURADOV,K.K.BOYD,S.RAMASWAMY, JRNL AUTH 2 N.O.ARTEMYEV JRNL TITL STRUCTURAL BASIS OF PHOSPHODIESTERASE 6 INHIBITION BY THE JRNL TITL 2 C-TERMINAL REGION OF THE GAMMA-SUBUNIT JRNL REF EMBO J. V. 28 3613 2009 JRNL REFN ISSN 0261-4189 JRNL PMID 19798052 JRNL DOI 10.1038/EMBOJ.2009.284 REMARK 2 REMARK 2 RESOLUTION. 2.87 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0102 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.87 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 23.08 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 86.7 REMARK 3 NUMBER OF REFLECTIONS : 31941 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.226 REMARK 3 R VALUE (WORKING SET) : 0.223 REMARK 3 FREE R VALUE : 0.275 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1655 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.87 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1927 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 72.34 REMARK 3 BIN R VALUE (WORKING SET) : 0.3780 REMARK 3 BIN FREE R VALUE SET COUNT : 102 REMARK 3 BIN FREE R VALUE : 0.4490 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 10570 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 140 REMARK 3 SOLVENT ATOMS : 13 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.42 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.38000 REMARK 3 B22 (A**2) : 1.25000 REMARK 3 B33 (A**2) : -0.87000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.489 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.317 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 35.246 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.925 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.880 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 10931 ; 0.015 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 14797 ; 1.512 ; 1.966 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 1294 ; 5.510 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 537 ;36.510 ;24.618 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1996 ;18.705 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 64 ;16.846 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1650 ; 0.105 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 8158 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 6494 ; 0.433 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 10492 ; 0.961 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 4437 ; 1.688 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 4305 ; 2.953 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 5 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B C D REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 537 A 663 1 REMARK 3 1 B 537 B 663 1 REMARK 3 1 C 537 C 663 1 REMARK 3 1 D 537 D 663 1 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 1 A (A): 1016 ; 0.050 ; 0.050 REMARK 3 TIGHT POSITIONAL 1 B (A): 1016 ; 0.050 ; 0.050 REMARK 3 TIGHT POSITIONAL 1 C (A): 1016 ; 0.050 ; 0.050 REMARK 3 TIGHT POSITIONAL 1 D (A): 1016 ; 0.040 ; 0.050 REMARK 3 TIGHT THERMAL 1 A (A**2): 1016 ; 0.110 ; 0.500 REMARK 3 TIGHT THERMAL 1 B (A**2): 1016 ; 0.100 ; 0.500 REMARK 3 TIGHT THERMAL 1 C (A**2): 1016 ; 0.090 ; 0.500 REMARK 3 TIGHT THERMAL 1 D (A**2): 1016 ; 0.090 ; 0.500 REMARK 3 REMARK 3 NCS GROUP NUMBER : 2 REMARK 3 CHAIN NAMES : A B C D REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 664 A 678 4 REMARK 3 1 B 664 B 678 4 REMARK 3 1 C 664 C 678 4 REMARK 3 1 D 664 D 678 4 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 2 A (A): 130 ; 0.580 ; 0.500 REMARK 3 MEDIUM POSITIONAL 2 B (A): 130 ; 0.520 ; 0.500 REMARK 3 MEDIUM POSITIONAL 2 C (A): 130 ; 0.780 ; 0.500 REMARK 3 MEDIUM POSITIONAL 2 D (A): 130 ; 0.630 ; 0.500 REMARK 3 MEDIUM THERMAL 2 A (A**2): 130 ; 0.720 ; 2.000 REMARK 3 MEDIUM THERMAL 2 B (A**2): 130 ; 0.780 ; 2.000 REMARK 3 MEDIUM THERMAL 2 C (A**2): 130 ; 0.730 ; 2.000 REMARK 3 MEDIUM THERMAL 2 D (A**2): 130 ; 0.580 ; 2.000 REMARK 3 REMARK 3 NCS GROUP NUMBER : 3 REMARK 3 CHAIN NAMES : A B C D REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 679 A 787 1 REMARK 3 1 B 679 B 787 1 REMARK 3 1 C 679 C 787 1 REMARK 3 1 D 679 D 787 1 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 3 A (A): 892 ; 0.060 ; 0.050 REMARK 3 TIGHT POSITIONAL 3 B (A): 892 ; 0.070 ; 0.050 REMARK 3 TIGHT POSITIONAL 3 C (A): 892 ; 0.050 ; 0.050 REMARK 3 TIGHT POSITIONAL 3 D (A): 892 ; 0.060 ; 0.050 REMARK 3 TIGHT THERMAL 3 A (A**2): 892 ; 0.120 ; 0.500 REMARK 3 TIGHT THERMAL 3 B (A**2): 892 ; 0.120 ; 0.500 REMARK 3 TIGHT THERMAL 3 C (A**2): 892 ; 0.100 ; 0.500 REMARK 3 TIGHT THERMAL 3 D (A**2): 892 ; 0.100 ; 0.500 REMARK 3 REMARK 3 NCS GROUP NUMBER : 4 REMARK 3 CHAIN NAMES : A B C D REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 788 A 815 4 REMARK 3 1 B 788 B 815 4 REMARK 3 1 C 788 C 815 4 REMARK 3 1 D 788 D 815 4 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 4 A (A): 233 ; 0.660 ; 0.500 REMARK 3 MEDIUM POSITIONAL 4 B (A): 233 ; 0.740 ; 0.500 REMARK 3 MEDIUM POSITIONAL 4 C (A): 233 ; 0.730 ; 0.500 REMARK 3 MEDIUM POSITIONAL 4 D (A): 233 ; 0.880 ; 0.500 REMARK 3 MEDIUM THERMAL 4 A (A**2): 233 ; 0.700 ; 2.000 REMARK 3 MEDIUM THERMAL 4 B (A**2): 233 ; 0.750 ; 2.000 REMARK 3 MEDIUM THERMAL 4 C (A**2): 233 ; 0.820 ; 2.000 REMARK 3 MEDIUM THERMAL 4 D (A**2): 233 ; 0.810 ; 2.000 REMARK 3 REMARK 3 NCS GROUP NUMBER : 5 REMARK 3 CHAIN NAMES : A B C D REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 816 A 859 1 REMARK 3 1 B 816 B 859 1 REMARK 3 1 C 816 C 859 1 REMARK 3 1 D 816 D 859 1 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 5 A (A): 358 ; 0.060 ; 0.050 REMARK 3 TIGHT POSITIONAL 5 B (A): 358 ; 0.060 ; 0.050 REMARK 3 TIGHT POSITIONAL 5 C (A): 358 ; 0.040 ; 0.050 REMARK 3 TIGHT POSITIONAL 5 D (A): 358 ; 0.050 ; 0.050 REMARK 3 TIGHT THERMAL 5 A (A**2): 358 ; 0.120 ; 0.500 REMARK 3 TIGHT THERMAL 5 B (A**2): 358 ; 0.110 ; 0.500 REMARK 3 TIGHT THERMAL 5 C (A**2): 358 ; 0.090 ; 0.500 REMARK 3 TIGHT THERMAL 5 D (A**2): 358 ; 0.100 ; 0.500 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 536 A 695 REMARK 3 ORIGIN FOR THE GROUP (A): -24.9810 -21.1410 33.1680 REMARK 3 T TENSOR REMARK 3 T11: 0.0810 T22: 0.1560 REMARK 3 T33: 0.0747 T12: -0.0258 REMARK 3 T13: -0.0204 T23: -0.0255 REMARK 3 L TENSOR REMARK 3 L11: 2.9166 L22: 2.7472 REMARK 3 L33: 1.4639 L12: -1.3504 REMARK 3 L13: -0.2225 L23: -0.1721 REMARK 3 S TENSOR REMARK 3 S11: 0.0002 S12: -0.0678 S13: -0.1105 REMARK 3 S21: -0.1009 S22: -0.0229 S23: 0.1671 REMARK 3 S31: 0.0658 S32: -0.2390 S33: 0.0226 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 696 A 859 REMARK 3 ORIGIN FOR THE GROUP (A): -10.1880 -22.0090 39.9620 REMARK 3 T TENSOR REMARK 3 T11: 0.1250 T22: 0.1437 REMARK 3 T33: 0.0868 T12: -0.0190 REMARK 3 T13: -0.0164 T23: -0.0317 REMARK 3 L TENSOR REMARK 3 L11: 1.7679 L22: 1.4506 REMARK 3 L33: 0.6162 L12: -0.3567 REMARK 3 L13: 0.3556 L23: 0.1640 REMARK 3 S TENSOR REMARK 3 S11: 0.0254 S12: -0.1339 S13: -0.0287 REMARK 3 S21: 0.1713 S22: 0.0031 S23: -0.1267 REMARK 3 S31: -0.0200 S32: 0.0346 S33: -0.0285 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 536 B 565 REMARK 3 ORIGIN FOR THE GROUP (A): 27.3510 -13.1340 15.5750 REMARK 3 T TENSOR REMARK 3 T11: 0.2329 T22: 0.3396 REMARK 3 T33: 0.3393 T12: -0.1513 REMARK 3 T13: 0.0480 T23: -0.0424 REMARK 3 L TENSOR REMARK 3 L11: 3.3394 L22: 11.0443 REMARK 3 L33: 4.4546 L12: 0.1727 REMARK 3 L13: 2.4626 L23: 0.0475 REMARK 3 S TENSOR REMARK 3 S11: 0.0733 S12: -0.0845 S13: 0.6892 REMARK 3 S21: 0.7444 S22: -0.1962 S23: -0.3259 REMARK 3 S31: -0.1398 S32: 0.2733 S33: 0.1230 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 566 B 859 REMARK 3 ORIGIN FOR THE GROUP (A): 15.9570 -29.0910 14.6300 REMARK 3 T TENSOR REMARK 3 T11: 0.0743 T22: 0.1948 REMARK 3 T33: 0.0769 T12: 0.0136 REMARK 3 T13: 0.0102 T23: -0.0037 REMARK 3 L TENSOR REMARK 3 L11: 1.6661 L22: 2.6241 REMARK 3 L33: 1.6283 L12: -0.1246 REMARK 3 L13: -0.2702 L23: 0.5579 REMARK 3 S TENSOR REMARK 3 S11: -0.0123 S12: -0.0579 S13: -0.0581 REMARK 3 S21: 0.0197 S22: 0.0530 S23: -0.0223 REMARK 3 S31: 0.0153 S32: 0.0538 S33: -0.0407 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 533 C 539 REMARK 3 ORIGIN FOR THE GROUP (A): -3.4670 -50.7450 -16.6460 REMARK 3 T TENSOR REMARK 3 T11: 1.2271 T22: 0.3914 REMARK 3 T33: 1.2729 T12: -0.3954 REMARK 3 T13: 0.3711 T23: 0.0147 REMARK 3 L TENSOR REMARK 3 L11: 1.1151 L22: 54.1611 REMARK 3 L33: 6.4561 L12: 0.4750 REMARK 3 L13: 1.4539 L23: 16.2314 REMARK 3 S TENSOR REMARK 3 S11: 0.1967 S12: -0.4277 S13: -0.6594 REMARK 3 S21: -1.3328 S22: 0.7823 S23: -0.9976 REMARK 3 S31: 0.0690 S32: -0.3271 S33: -0.9790 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 540 C 859 REMARK 3 ORIGIN FOR THE GROUP (A): 0.3030 -68.3450 5.4210 REMARK 3 T TENSOR REMARK 3 T11: 0.3916 T22: 0.1432 REMARK 3 T33: 0.3868 T12: 0.0194 REMARK 3 T13: 0.0225 T23: -0.0248 REMARK 3 L TENSOR REMARK 3 L11: 1.7407 L22: 2.6638 REMARK 3 L33: 2.3650 L12: 0.7464 REMARK 3 L13: 0.2912 L23: 0.2268 REMARK 3 S TENSOR REMARK 3 S11: 0.0291 S12: 0.1067 S13: -0.4356 REMARK 3 S21: -0.1979 S22: -0.0399 S23: -0.0618 REMARK 3 S31: 0.4758 S32: 0.0010 S33: 0.0109 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 536 D 590 REMARK 3 ORIGIN FOR THE GROUP (A): -22.6460 -82.8710 44.6180 REMARK 3 T TENSOR REMARK 3 T11: 0.5469 T22: 0.1705 REMARK 3 T33: 0.5780 T12: -0.1101 REMARK 3 T13: 0.0492 T23: 0.1235 REMARK 3 L TENSOR REMARK 3 L11: 4.7574 L22: 6.6342 REMARK 3 L33: 4.5712 L12: 0.0071 REMARK 3 L13: -0.5721 L23: 1.6684 REMARK 3 S TENSOR REMARK 3 S11: -0.1480 S12: 0.0678 S13: -0.9050 REMARK 3 S21: 0.2483 S22: 0.1742 S23: 0.3240 REMARK 3 S31: 0.8209 S32: 0.1447 S33: -0.0261 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 591 D 859 REMARK 3 ORIGIN FOR THE GROUP (A): -17.5180 -63.6170 40.9670 REMARK 3 T TENSOR REMARK 3 T11: 0.2468 T22: 0.1707 REMARK 3 T33: 0.2495 T12: -0.0335 REMARK 3 T13: -0.0384 T23: 0.0804 REMARK 3 L TENSOR REMARK 3 L11: 1.7163 L22: 2.4922 REMARK 3 L33: 2.2494 L12: 0.1139 REMARK 3 L13: 0.2205 L23: 0.3933 REMARK 3 S TENSOR REMARK 3 S11: -0.0110 S12: 0.2035 S13: -0.1625 REMARK 3 S21: -0.0580 S22: -0.0098 S23: 0.2764 REMARK 3 S31: 0.2684 S32: -0.2064 S33: 0.0207 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3JWQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-SEP-09. REMARK 100 THE DEPOSITION ID IS D_1000055255. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-OCT-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 17-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : D*TREK REMARK 200 DATA SCALING SOFTWARE : D*TREK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31941 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.870 REMARK 200 RESOLUTION RANGE LOW (A) : 29.800 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 86.7 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.87 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 72.3 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2H42 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.96 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.73 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM TRIS, 200 MM MGSO4, 12% PEG REMARK 280 -3350, 2.5% ETHANOL, PH 8.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 37.86600 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 99.83400 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 54.91250 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 99.83400 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 37.86600 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 54.91250 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 531 REMARK 465 SER A 532 REMARK 465 HIS A 533 REMARK 465 MET A 534 REMARK 465 GLU A 535 REMARK 465 GLN A 860 REMARK 465 GLY B 531 REMARK 465 SER B 532 REMARK 465 HIS B 533 REMARK 465 MET B 534 REMARK 465 GLU B 535 REMARK 465 GLN B 860 REMARK 465 GLY C 531 REMARK 465 SER C 532 REMARK 465 GLN C 860 REMARK 465 GLY D 531 REMARK 465 SER D 532 REMARK 465 HIS D 533 REMARK 465 MET D 534 REMARK 465 GLU D 535 REMARK 465 GLU D 536 REMARK 465 GLN D 860 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 1 O HOH B 11 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASN B 661 CB - CA - C ANGL. DEV. = -14.7 DEGREES REMARK 500 ASN C 661 CB - CA - C ANGL. DEV. = -13.9 DEGREES REMARK 500 ASN D 661 CB - CA - C ANGL. DEV. = -14.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 612 -51.73 -127.27 REMARK 500 LYS A 630 -74.13 -89.52 REMARK 500 ASN A 661 -179.29 -67.97 REMARK 500 GLN A 666 -71.68 -44.93 REMARK 500 LYS A 809 43.46 -98.71 REMARK 500 LYS B 630 -73.62 -86.70 REMARK 500 ARG B 732 -59.41 -27.66 REMARK 500 GLN B 798 75.06 25.32 REMARK 500 ARG B 810 -86.05 -73.60 REMARK 500 ASP B 811 65.64 -31.73 REMARK 500 GLU B 812 -20.74 -144.72 REMARK 500 MET C 534 -24.00 99.47 REMARK 500 ASN C 614 -168.16 -121.57 REMARK 500 LYS C 630 -73.11 -87.02 REMARK 500 GLU C 669 53.62 28.95 REMARK 500 SER C 679 60.13 32.44 REMARK 500 ARG C 732 -63.77 -25.24 REMARK 500 ASN C 745 110.59 -161.24 REMARK 500 ARG C 807 25.79 -73.34 REMARK 500 TYR D 612 -50.26 -123.31 REMARK 500 LYS D 630 -72.30 -86.71 REMARK 500 ASN D 661 160.80 -48.20 REMARK 500 CYS D 677 -74.38 -52.78 REMARK 500 ARG D 732 -63.51 -19.76 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 900 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 4 O REMARK 620 2 HOH A 7 O 77.2 REMARK 620 3 ASP A 654 OD1 62.2 74.1 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 899 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 6 O REMARK 620 2 HIS A 617 NE2 113.6 REMARK 620 3 HIS A 653 NE2 155.1 90.6 REMARK 620 4 ASP A 654 OD2 102.2 83.5 85.3 REMARK 620 5 ASP A 764 OD1 83.1 82.8 95.1 166.3 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 900 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B 1 O REMARK 620 2 HOH B 11 O 63.4 REMARK 620 3 HOH B 12 O 137.7 74.5 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 899 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 617 NE2 REMARK 620 2 HIS B 653 NE2 87.2 REMARK 620 3 ASP B 654 OD2 80.8 80.6 REMARK 620 4 ASP B 764 OD1 83.7 88.0 161.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG C 900 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH C 3 O REMARK 620 2 HOH C 14 O 138.4 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C 899 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS C 617 NE2 REMARK 620 2 HIS C 653 NE2 83.6 REMARK 620 3 ASP C 654 OD2 78.7 81.4 REMARK 620 4 ASP C 764 OD1 80.6 87.8 157.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN D 899 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS D 617 NE2 REMARK 620 2 HIS D 653 NE2 91.5 REMARK 620 3 ASP D 654 OD2 89.0 83.7 REMARK 620 4 ASP D 764 OD1 81.3 88.9 167.7 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 899 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 900 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE VIA A 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 899 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 900 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE VIA B 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN C 899 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG C 900 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE VIA C 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN D 899 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG D 900 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE VIA D 901 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3JWR RELATED DB: PDB DBREF 3JWQ A 535 786 UNP O76074 PDE5A_HUMAN 535 786 DBREF 3JWQ A 787 826 UNP P51160 PDE6C_HUMAN 746 785 DBREF 3JWQ A 827 860 UNP O76074 PDE5A_HUMAN 827 860 DBREF 3JWQ B 535 786 UNP O76074 PDE5A_HUMAN 535 786 DBREF 3JWQ B 787 826 UNP P51160 PDE6C_HUMAN 746 785 DBREF 3JWQ B 827 860 UNP O76074 PDE5A_HUMAN 827 860 DBREF 3JWQ C 535 786 UNP O76074 PDE5A_HUMAN 535 786 DBREF 3JWQ C 787 826 UNP P51160 PDE6C_HUMAN 746 785 DBREF 3JWQ C 827 860 UNP O76074 PDE5A_HUMAN 827 860 DBREF 3JWQ D 535 786 UNP O76074 PDE5A_HUMAN 535 786 DBREF 3JWQ D 787 826 UNP P51160 PDE6C_HUMAN 746 785 DBREF 3JWQ D 827 860 UNP O76074 PDE5A_HUMAN 827 860 SEQADV 3JWQ GLY A 531 UNP O76074 EXPRESSION TAG SEQADV 3JWQ SER A 532 UNP O76074 EXPRESSION TAG SEQADV 3JWQ HIS A 533 UNP O76074 EXPRESSION TAG SEQADV 3JWQ MET A 534 UNP O76074 EXPRESSION TAG SEQADV 3JWQ GLY B 531 UNP O76074 EXPRESSION TAG SEQADV 3JWQ SER B 532 UNP O76074 EXPRESSION TAG SEQADV 3JWQ HIS B 533 UNP O76074 EXPRESSION TAG SEQADV 3JWQ MET B 534 UNP O76074 EXPRESSION TAG SEQADV 3JWQ GLY C 531 UNP O76074 EXPRESSION TAG SEQADV 3JWQ SER C 532 UNP O76074 EXPRESSION TAG SEQADV 3JWQ HIS C 533 UNP O76074 EXPRESSION TAG SEQADV 3JWQ MET C 534 UNP O76074 EXPRESSION TAG SEQADV 3JWQ GLY D 531 UNP O76074 EXPRESSION TAG SEQADV 3JWQ SER D 532 UNP O76074 EXPRESSION TAG SEQADV 3JWQ HIS D 533 UNP O76074 EXPRESSION TAG SEQADV 3JWQ MET D 534 UNP O76074 EXPRESSION TAG SEQRES 1 A 330 GLY SER HIS MET GLU GLU THR ARG GLU LEU GLN SER LEU SEQRES 2 A 330 ALA ALA ALA VAL VAL PRO SER ALA GLN THR LEU LYS ILE SEQRES 3 A 330 THR ASP PHE SER PHE SER ASP PHE GLU LEU SER ASP LEU SEQRES 4 A 330 GLU THR ALA LEU CYS THR ILE ARG MET PHE THR ASP LEU SEQRES 5 A 330 ASN LEU VAL GLN ASN PHE GLN MET LYS HIS GLU VAL LEU SEQRES 6 A 330 CYS ARG TRP ILE LEU SER VAL LYS LYS ASN TYR ARG LYS SEQRES 7 A 330 ASN VAL ALA TYR HIS ASN TRP ARG HIS ALA PHE ASN THR SEQRES 8 A 330 ALA GLN CYS MET PHE ALA ALA LEU LYS ALA GLY LYS ILE SEQRES 9 A 330 GLN ASN LYS LEU THR ASP LEU GLU ILE LEU ALA LEU LEU SEQRES 10 A 330 ILE ALA ALA LEU SER HIS ASP LEU ASP HIS ARG GLY VAL SEQRES 11 A 330 ASN ASN SER TYR ILE GLN ARG SER GLU HIS PRO LEU ALA SEQRES 12 A 330 GLN LEU TYR CYS HIS SER ILE MET GLU HIS HIS HIS PHE SEQRES 13 A 330 ASP GLN CYS LEU MET ILE LEU ASN SER PRO GLY ASN GLN SEQRES 14 A 330 ILE LEU SER GLY LEU SER ILE GLU GLU TYR LYS THR THR SEQRES 15 A 330 LEU LYS ILE ILE LYS GLN ALA ILE LEU ALA THR ASP LEU SEQRES 16 A 330 ALA LEU TYR ILE LYS ARG ARG GLY GLU PHE PHE GLU LEU SEQRES 17 A 330 ILE ARG LYS ASN GLN PHE ASN LEU GLU ASP PRO HIS GLN SEQRES 18 A 330 LYS GLU LEU PHE LEU ALA MET LEU MET THR ALA CYS ASP SEQRES 19 A 330 LEU SER ALA ILE THR LYS PRO TRP PRO ILE GLN GLN ARG SEQRES 20 A 330 ILE ALA GLU LEU VAL ALA THR GLU PHE TRP GLU GLN GLY SEQRES 21 A 330 ASP LEU GLU ARG THR VAL LEU GLN GLN GLN PRO ILE PRO SEQRES 22 A 330 MET MET ASP ARG ASN LYS ARG ASP GLU LEU PRO LYS LEU SEQRES 23 A 330 GLN VAL GLY PHE ILE ASP PHE VAL CYS THR GLN LEU TYR SEQRES 24 A 330 GLU ALA LEU THR HIS VAL SER GLU ASP CYS PHE PRO LEU SEQRES 25 A 330 LEU ASP GLY CYS ARG LYS ASN ARG GLN LYS TRP GLN ALA SEQRES 26 A 330 LEU ALA GLU GLN GLN SEQRES 1 B 330 GLY SER HIS MET GLU GLU THR ARG GLU LEU GLN SER LEU SEQRES 2 B 330 ALA ALA ALA VAL VAL PRO SER ALA GLN THR LEU LYS ILE SEQRES 3 B 330 THR ASP PHE SER PHE SER ASP PHE GLU LEU SER ASP LEU SEQRES 4 B 330 GLU THR ALA LEU CYS THR ILE ARG MET PHE THR ASP LEU SEQRES 5 B 330 ASN LEU VAL GLN ASN PHE GLN MET LYS HIS GLU VAL LEU SEQRES 6 B 330 CYS ARG TRP ILE LEU SER VAL LYS LYS ASN TYR ARG LYS SEQRES 7 B 330 ASN VAL ALA TYR HIS ASN TRP ARG HIS ALA PHE ASN THR SEQRES 8 B 330 ALA GLN CYS MET PHE ALA ALA LEU LYS ALA GLY LYS ILE SEQRES 9 B 330 GLN ASN LYS LEU THR ASP LEU GLU ILE LEU ALA LEU LEU SEQRES 10 B 330 ILE ALA ALA LEU SER HIS ASP LEU ASP HIS ARG GLY VAL SEQRES 11 B 330 ASN ASN SER TYR ILE GLN ARG SER GLU HIS PRO LEU ALA SEQRES 12 B 330 GLN LEU TYR CYS HIS SER ILE MET GLU HIS HIS HIS PHE SEQRES 13 B 330 ASP GLN CYS LEU MET ILE LEU ASN SER PRO GLY ASN GLN SEQRES 14 B 330 ILE LEU SER GLY LEU SER ILE GLU GLU TYR LYS THR THR SEQRES 15 B 330 LEU LYS ILE ILE LYS GLN ALA ILE LEU ALA THR ASP LEU SEQRES 16 B 330 ALA LEU TYR ILE LYS ARG ARG GLY GLU PHE PHE GLU LEU SEQRES 17 B 330 ILE ARG LYS ASN GLN PHE ASN LEU GLU ASP PRO HIS GLN SEQRES 18 B 330 LYS GLU LEU PHE LEU ALA MET LEU MET THR ALA CYS ASP SEQRES 19 B 330 LEU SER ALA ILE THR LYS PRO TRP PRO ILE GLN GLN ARG SEQRES 20 B 330 ILE ALA GLU LEU VAL ALA THR GLU PHE TRP GLU GLN GLY SEQRES 21 B 330 ASP LEU GLU ARG THR VAL LEU GLN GLN GLN PRO ILE PRO SEQRES 22 B 330 MET MET ASP ARG ASN LYS ARG ASP GLU LEU PRO LYS LEU SEQRES 23 B 330 GLN VAL GLY PHE ILE ASP PHE VAL CYS THR GLN LEU TYR SEQRES 24 B 330 GLU ALA LEU THR HIS VAL SER GLU ASP CYS PHE PRO LEU SEQRES 25 B 330 LEU ASP GLY CYS ARG LYS ASN ARG GLN LYS TRP GLN ALA SEQRES 26 B 330 LEU ALA GLU GLN GLN SEQRES 1 C 330 GLY SER HIS MET GLU GLU THR ARG GLU LEU GLN SER LEU SEQRES 2 C 330 ALA ALA ALA VAL VAL PRO SER ALA GLN THR LEU LYS ILE SEQRES 3 C 330 THR ASP PHE SER PHE SER ASP PHE GLU LEU SER ASP LEU SEQRES 4 C 330 GLU THR ALA LEU CYS THR ILE ARG MET PHE THR ASP LEU SEQRES 5 C 330 ASN LEU VAL GLN ASN PHE GLN MET LYS HIS GLU VAL LEU SEQRES 6 C 330 CYS ARG TRP ILE LEU SER VAL LYS LYS ASN TYR ARG LYS SEQRES 7 C 330 ASN VAL ALA TYR HIS ASN TRP ARG HIS ALA PHE ASN THR SEQRES 8 C 330 ALA GLN CYS MET PHE ALA ALA LEU LYS ALA GLY LYS ILE SEQRES 9 C 330 GLN ASN LYS LEU THR ASP LEU GLU ILE LEU ALA LEU LEU SEQRES 10 C 330 ILE ALA ALA LEU SER HIS ASP LEU ASP HIS ARG GLY VAL SEQRES 11 C 330 ASN ASN SER TYR ILE GLN ARG SER GLU HIS PRO LEU ALA SEQRES 12 C 330 GLN LEU TYR CYS HIS SER ILE MET GLU HIS HIS HIS PHE SEQRES 13 C 330 ASP GLN CYS LEU MET ILE LEU ASN SER PRO GLY ASN GLN SEQRES 14 C 330 ILE LEU SER GLY LEU SER ILE GLU GLU TYR LYS THR THR SEQRES 15 C 330 LEU LYS ILE ILE LYS GLN ALA ILE LEU ALA THR ASP LEU SEQRES 16 C 330 ALA LEU TYR ILE LYS ARG ARG GLY GLU PHE PHE GLU LEU SEQRES 17 C 330 ILE ARG LYS ASN GLN PHE ASN LEU GLU ASP PRO HIS GLN SEQRES 18 C 330 LYS GLU LEU PHE LEU ALA MET LEU MET THR ALA CYS ASP SEQRES 19 C 330 LEU SER ALA ILE THR LYS PRO TRP PRO ILE GLN GLN ARG SEQRES 20 C 330 ILE ALA GLU LEU VAL ALA THR GLU PHE TRP GLU GLN GLY SEQRES 21 C 330 ASP LEU GLU ARG THR VAL LEU GLN GLN GLN PRO ILE PRO SEQRES 22 C 330 MET MET ASP ARG ASN LYS ARG ASP GLU LEU PRO LYS LEU SEQRES 23 C 330 GLN VAL GLY PHE ILE ASP PHE VAL CYS THR GLN LEU TYR SEQRES 24 C 330 GLU ALA LEU THR HIS VAL SER GLU ASP CYS PHE PRO LEU SEQRES 25 C 330 LEU ASP GLY CYS ARG LYS ASN ARG GLN LYS TRP GLN ALA SEQRES 26 C 330 LEU ALA GLU GLN GLN SEQRES 1 D 330 GLY SER HIS MET GLU GLU THR ARG GLU LEU GLN SER LEU SEQRES 2 D 330 ALA ALA ALA VAL VAL PRO SER ALA GLN THR LEU LYS ILE SEQRES 3 D 330 THR ASP PHE SER PHE SER ASP PHE GLU LEU SER ASP LEU SEQRES 4 D 330 GLU THR ALA LEU CYS THR ILE ARG MET PHE THR ASP LEU SEQRES 5 D 330 ASN LEU VAL GLN ASN PHE GLN MET LYS HIS GLU VAL LEU SEQRES 6 D 330 CYS ARG TRP ILE LEU SER VAL LYS LYS ASN TYR ARG LYS SEQRES 7 D 330 ASN VAL ALA TYR HIS ASN TRP ARG HIS ALA PHE ASN THR SEQRES 8 D 330 ALA GLN CYS MET PHE ALA ALA LEU LYS ALA GLY LYS ILE SEQRES 9 D 330 GLN ASN LYS LEU THR ASP LEU GLU ILE LEU ALA LEU LEU SEQRES 10 D 330 ILE ALA ALA LEU SER HIS ASP LEU ASP HIS ARG GLY VAL SEQRES 11 D 330 ASN ASN SER TYR ILE GLN ARG SER GLU HIS PRO LEU ALA SEQRES 12 D 330 GLN LEU TYR CYS HIS SER ILE MET GLU HIS HIS HIS PHE SEQRES 13 D 330 ASP GLN CYS LEU MET ILE LEU ASN SER PRO GLY ASN GLN SEQRES 14 D 330 ILE LEU SER GLY LEU SER ILE GLU GLU TYR LYS THR THR SEQRES 15 D 330 LEU LYS ILE ILE LYS GLN ALA ILE LEU ALA THR ASP LEU SEQRES 16 D 330 ALA LEU TYR ILE LYS ARG ARG GLY GLU PHE PHE GLU LEU SEQRES 17 D 330 ILE ARG LYS ASN GLN PHE ASN LEU GLU ASP PRO HIS GLN SEQRES 18 D 330 LYS GLU LEU PHE LEU ALA MET LEU MET THR ALA CYS ASP SEQRES 19 D 330 LEU SER ALA ILE THR LYS PRO TRP PRO ILE GLN GLN ARG SEQRES 20 D 330 ILE ALA GLU LEU VAL ALA THR GLU PHE TRP GLU GLN GLY SEQRES 21 D 330 ASP LEU GLU ARG THR VAL LEU GLN GLN GLN PRO ILE PRO SEQRES 22 D 330 MET MET ASP ARG ASN LYS ARG ASP GLU LEU PRO LYS LEU SEQRES 23 D 330 GLN VAL GLY PHE ILE ASP PHE VAL CYS THR GLN LEU TYR SEQRES 24 D 330 GLU ALA LEU THR HIS VAL SER GLU ASP CYS PHE PRO LEU SEQRES 25 D 330 LEU ASP GLY CYS ARG LYS ASN ARG GLN LYS TRP GLN ALA SEQRES 26 D 330 LEU ALA GLU GLN GLN HET ZN A 899 1 HET MG A 900 1 HET VIA A 901 33 HET ZN B 899 1 HET MG B 900 1 HET VIA B 901 33 HET ZN C 899 1 HET MG C 900 1 HET VIA C 901 33 HET ZN D 899 1 HET MG D 900 1 HET VIA D 901 33 HETNAM ZN ZINC ION HETNAM MG MAGNESIUM ION HETNAM VIA 5-{2-ETHOXY-5-[(4-METHYLPIPERAZIN-1-YL) HETNAM 2 VIA SULFONYL]PHENYL}-1-METHYL-3-PROPYL-1H,6H,7H- HETNAM 3 VIA PYRAZOLO[4,3-D]PYRIMIDIN-7-ONE HETSYN VIA SILDENAFIL; VIAGRA FORMUL 5 ZN 4(ZN 2+) FORMUL 6 MG 4(MG 2+) FORMUL 7 VIA 4(C22 H30 N6 O4 S) FORMUL 17 HOH *13(H2 O) HELIX 1 1 GLU A 536 ALA A 546 1 11 HELIX 2 2 SER A 567 LEU A 582 1 16 HELIX 3 3 ASN A 583 GLN A 589 1 7 HELIX 4 4 LYS A 591 ASN A 605 1 15 HELIX 5 5 ASN A 614 LYS A 630 1 17 HELIX 6 6 ILE A 634 LEU A 638 5 5 HELIX 7 7 THR A 639 HIS A 653 1 15 HELIX 8 8 ASN A 661 SER A 668 1 8 HELIX 9 9 PRO A 671 TYR A 676 1 6 HELIX 10 10 SER A 679 ASN A 694 1 16 HELIX 11 11 SER A 705 ALA A 722 1 18 HELIX 12 12 ASP A 724 LYS A 741 1 18 HELIX 13 13 ASP A 748 LEU A 765 1 18 HELIX 14 14 SER A 766 LYS A 770 5 5 HELIX 15 15 PRO A 771 VAL A 796 1 26 HELIX 16 16 ILE A 802 ASP A 811 5 10 HELIX 17 17 GLU A 812 VAL A 824 1 13 HELIX 18 18 VAL A 824 SER A 836 1 13 HELIX 19 19 CYS A 839 GLU A 858 1 20 HELIX 20 20 GLU B 536 ALA B 546 1 11 HELIX 21 21 SER B 550 LYS B 555 1 6 HELIX 22 22 SER B 567 LEU B 582 1 16 HELIX 23 23 ASN B 583 GLN B 589 1 7 HELIX 24 24 LYS B 591 ASN B 605 1 15 HELIX 25 25 ASN B 614 ALA B 631 1 18 HELIX 26 26 ILE B 634 LEU B 638 5 5 HELIX 27 27 THR B 639 HIS B 653 1 15 HELIX 28 28 ASN B 661 SER B 668 1 8 HELIX 29 29 HIS B 670 TYR B 676 1 7 HELIX 30 30 SER B 679 ASN B 694 1 16 HELIX 31 31 SER B 705 ALA B 722 1 18 HELIX 32 32 ASP B 724 LYS B 741 1 18 HELIX 33 33 ASP B 748 LEU B 765 1 18 HELIX 34 34 SER B 766 LYS B 770 5 5 HELIX 35 35 PRO B 771 LEU B 797 1 27 HELIX 36 36 ILE B 802 ASP B 806 5 5 HELIX 37 37 GLU B 812 VAL B 824 1 13 HELIX 38 38 CYS B 825 SER B 836 1 12 HELIX 39 39 CYS B 839 ALA B 857 1 19 HELIX 40 40 THR C 537 ALA C 546 1 10 HELIX 41 41 SER C 550 LYS C 555 1 6 HELIX 42 42 SER C 567 LEU C 582 1 16 HELIX 43 43 ASN C 583 GLN C 589 1 7 HELIX 44 44 LYS C 591 ASN C 605 1 15 HELIX 45 45 ASN C 614 LYS C 630 1 17 HELIX 46 46 ILE C 634 LEU C 638 5 5 HELIX 47 47 THR C 639 HIS C 653 1 15 HELIX 48 48 ASN C 661 SER C 668 1 8 HELIX 49 49 PRO C 671 TYR C 676 1 6 HELIX 50 50 SER C 679 ASN C 694 1 16 HELIX 51 51 SER C 705 ALA C 722 1 18 HELIX 52 52 ASP C 724 LYS C 741 1 18 HELIX 53 53 ASP C 748 LEU C 765 1 18 HELIX 54 54 SER C 766 LYS C 770 5 5 HELIX 55 55 PRO C 771 VAL C 796 1 26 HELIX 56 56 ILE C 802 ASP C 806 5 5 HELIX 57 57 LYS C 809 ASP C 811 5 3 HELIX 58 58 GLU C 812 VAL C 824 1 13 HELIX 59 59 VAL C 824 SER C 836 1 13 HELIX 60 60 CYS C 839 ALA C 857 1 19 HELIX 61 61 THR D 537 ALA D 546 1 10 HELIX 62 62 SER D 567 LEU D 582 1 16 HELIX 63 63 ASN D 583 GLN D 589 1 7 HELIX 64 64 LYS D 591 ASN D 605 1 15 HELIX 65 65 ASN D 614 LYS D 630 1 17 HELIX 66 66 ILE D 634 LEU D 638 5 5 HELIX 67 67 THR D 639 HIS D 653 1 15 HELIX 68 68 ASN D 661 SER D 668 1 8 HELIX 69 69 HIS D 670 LEU D 675 5 6 HELIX 70 70 SER D 679 ASN D 694 1 16 HELIX 71 71 SER D 705 ALA D 722 1 18 HELIX 72 72 ASP D 724 LYS D 741 1 18 HELIX 73 73 ASP D 748 LEU D 765 1 18 HELIX 74 74 SER D 766 LYS D 770 5 5 HELIX 75 75 PRO D 771 VAL D 796 1 26 HELIX 76 76 ILE D 802 ASP D 811 5 10 HELIX 77 77 GLU D 812 VAL D 824 1 13 HELIX 78 78 CYS D 825 SER D 836 1 12 HELIX 79 79 CYS D 839 GLU D 858 1 20 LINK O HOH A 4 MG MG A 900 1555 1555 2.34 LINK O HOH A 6 ZN ZN A 899 1555 1555 2.29 LINK O HOH A 7 MG MG A 900 1555 1555 2.42 LINK NE2 HIS A 617 ZN ZN A 899 1555 1555 2.21 LINK NE2 HIS A 653 ZN ZN A 899 1555 1555 2.14 LINK OD2 ASP A 654 ZN ZN A 899 1555 1555 2.10 LINK OD1 ASP A 654 MG MG A 900 1555 1555 2.31 LINK OD1 ASP A 764 ZN ZN A 899 1555 1555 2.30 LINK O HOH B 1 MG MG B 900 1555 1555 1.93 LINK O HOH B 11 MG MG B 900 1555 1555 2.22 LINK O HOH B 12 MG MG B 900 1555 1555 2.00 LINK NE2 HIS B 617 ZN ZN B 899 1555 1555 2.26 LINK NE2 HIS B 653 ZN ZN B 899 1555 1555 2.28 LINK OD2 ASP B 654 ZN ZN B 899 1555 1555 2.09 LINK OD1 ASP B 764 ZN ZN B 899 1555 1555 2.18 LINK O HOH C 3 MG MG C 900 1555 1555 2.02 LINK O HOH C 14 MG MG C 900 1555 1555 2.27 LINK NE2 HIS C 617 ZN ZN C 899 1555 1555 2.36 LINK NE2 HIS C 653 ZN ZN C 899 1555 1555 2.25 LINK OD2 ASP C 654 ZN ZN C 899 1555 1555 2.07 LINK OD1 ASP C 764 ZN ZN C 899 1555 1555 2.30 LINK O HOH D 5 MG MG D 900 1555 1555 2.09 LINK NE2 HIS D 617 ZN ZN D 899 1555 1555 2.21 LINK NE2 HIS D 653 ZN ZN D 899 1555 1555 2.16 LINK OD2 ASP D 654 ZN ZN D 899 1555 1555 1.96 LINK OD1 ASP D 764 ZN ZN D 899 1555 1555 2.26 SITE 1 AC1 6 HOH A 6 HIS A 617 HIS A 653 ASP A 654 SITE 2 AC1 6 ASP A 764 MG A 900 SITE 1 AC2 7 HOH A 4 HOH A 6 HOH A 7 HOH A 8 SITE 2 AC2 7 ASP A 654 THR A 723 ZN A 899 SITE 1 AC3 4 TYR A 612 MET A 804 GLN A 817 PHE A 820 SITE 1 AC4 5 HIS B 617 HIS B 653 ASP B 654 ASP B 764 SITE 2 AC4 5 MG B 900 SITE 1 AC5 7 HOH B 1 HOH B 11 HOH B 12 ASP B 654 SITE 2 AC5 7 GLU B 682 THR B 723 ZN B 899 SITE 1 AC6 9 HIS B 613 VAL B 782 PHE B 786 MET B 804 SITE 2 AC6 9 LEU B 813 GLN B 817 PHE B 820 ARG C 794 SITE 3 AC6 9 THR C 795 SITE 1 AC7 4 HIS C 617 HIS C 653 ASP C 654 ASP C 764 SITE 1 AC8 6 HOH C 3 HOH C 13 HOH C 14 ASP C 654 SITE 2 AC8 6 GLU C 682 THR C 723 SITE 1 AC9 6 TYR C 612 PHE C 786 MET C 804 GLN C 817 SITE 2 AC9 6 PHE C 820 VAL C 824 SITE 1 BC1 4 HIS D 617 HIS D 653 ASP D 654 ASP D 764 SITE 1 BC2 4 HOH D 5 ASP D 654 GLU D 682 THR D 723 SITE 1 BC3 5 ARG A 794 TYR D 612 MET D 804 GLN D 817 SITE 2 BC3 5 PHE D 820 CRYST1 75.732 109.825 199.668 90.00 90.00 90.00 P 21 21 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013204 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009105 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005008 0.00000