data_3JXW # _entry.id 3JXW # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.279 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 3JXW RCSB RCSB055297 WWPDB D_1000055297 # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3JXW _pdbx_database_status.recvd_initial_deposition_date 2009-09-21 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? # _audit_author.name 'Stoll, V.S.' _audit_author.pdbx_ordinal 1 # _citation.id primary _citation.title 'Discovery of 3H-benzo[4,5]thieno[3,2-d]pyrimidin-4-ones as Potent, Highly Selective and Orally Bioavailable Pim Kinases Inhibitors' _citation.journal_abbrev 'TO BE PUBLISHED' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Tao, Z.F.' 1 primary 'Hasvold, L.' 2 primary 'Leverson, J.' 3 primary 'Han, E.' 4 primary 'Guan, R.' 5 primary 'Johson, E.F.' 6 primary 'Stoll, V.S.' 7 primary 'Stewart, K.D.' 8 primary 'Stamper, G.' 9 primary 'Soni, N.' 10 # _cell.entry_id 3JXW _cell.length_a 98.298 _cell.length_b 98.298 _cell.length_c 80.629 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3JXW _symmetry.space_group_name_H-M 'P 65' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Proto-oncogene serine/threonine-protein kinase Pim-1' 33963.516 1 2.7.11.1 ? ? ? 2 non-polymer syn '8-[(E)-2-cyclopropylethenyl]-2-[(dimethylamino)methyl][1]benzothieno[3,2-d]pyrimidin-4(3H)-one' 325.428 1 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MKEKEPLESQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGVIRLL DWFERPDSFVLILERPEPVQDLFDFITERGALQEELARSFFWQVLEAVRHCHNCGVLHRDIKDENILIDLNRGELKLIDF GSGALLKDTVYTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDIPFEHDEEIIRGQVFFRQRVSSECQHLI RWCLALRPSDRPTFEEIQNHPWMQDVLLPQETAEIHLHSLSPGPSKVDHHHHHH ; _entity_poly.pdbx_seq_one_letter_code_can ;MKEKEPLESQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGVIRLL DWFERPDSFVLILERPEPVQDLFDFITERGALQEELARSFFWQVLEAVRHCHNCGVLHRDIKDENILIDLNRGELKLIDF GSGALLKDTVYTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDIPFEHDEEIIRGQVFFRQRVSSECQHLI RWCLALRPSDRPTFEEIQNHPWMQDVLLPQETAEIHLHSLSPGPSKVDHHHHHH ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 LYS n 1 3 GLU n 1 4 LYS n 1 5 GLU n 1 6 PRO n 1 7 LEU n 1 8 GLU n 1 9 SER n 1 10 GLN n 1 11 TYR n 1 12 GLN n 1 13 VAL n 1 14 GLY n 1 15 PRO n 1 16 LEU n 1 17 LEU n 1 18 GLY n 1 19 SER n 1 20 GLY n 1 21 GLY n 1 22 PHE n 1 23 GLY n 1 24 SER n 1 25 VAL n 1 26 TYR n 1 27 SER n 1 28 GLY n 1 29 ILE n 1 30 ARG n 1 31 VAL n 1 32 SER n 1 33 ASP n 1 34 ASN n 1 35 LEU n 1 36 PRO n 1 37 VAL n 1 38 ALA n 1 39 ILE n 1 40 LYS n 1 41 HIS n 1 42 VAL n 1 43 GLU n 1 44 LYS n 1 45 ASP n 1 46 ARG n 1 47 ILE n 1 48 SER n 1 49 ASP n 1 50 TRP n 1 51 GLY n 1 52 GLU n 1 53 LEU n 1 54 PRO n 1 55 ASN n 1 56 GLY n 1 57 THR n 1 58 ARG n 1 59 VAL n 1 60 PRO n 1 61 MET n 1 62 GLU n 1 63 VAL n 1 64 VAL n 1 65 LEU n 1 66 LEU n 1 67 LYS n 1 68 LYS n 1 69 VAL n 1 70 SER n 1 71 SER n 1 72 GLY n 1 73 PHE n 1 74 SER n 1 75 GLY n 1 76 VAL n 1 77 ILE n 1 78 ARG n 1 79 LEU n 1 80 LEU n 1 81 ASP n 1 82 TRP n 1 83 PHE n 1 84 GLU n 1 85 ARG n 1 86 PRO n 1 87 ASP n 1 88 SER n 1 89 PHE n 1 90 VAL n 1 91 LEU n 1 92 ILE n 1 93 LEU n 1 94 GLU n 1 95 ARG n 1 96 PRO n 1 97 GLU n 1 98 PRO n 1 99 VAL n 1 100 GLN n 1 101 ASP n 1 102 LEU n 1 103 PHE n 1 104 ASP n 1 105 PHE n 1 106 ILE n 1 107 THR n 1 108 GLU n 1 109 ARG n 1 110 GLY n 1 111 ALA n 1 112 LEU n 1 113 GLN n 1 114 GLU n 1 115 GLU n 1 116 LEU n 1 117 ALA n 1 118 ARG n 1 119 SER n 1 120 PHE n 1 121 PHE n 1 122 TRP n 1 123 GLN n 1 124 VAL n 1 125 LEU n 1 126 GLU n 1 127 ALA n 1 128 VAL n 1 129 ARG n 1 130 HIS n 1 131 CYS n 1 132 HIS n 1 133 ASN n 1 134 CYS n 1 135 GLY n 1 136 VAL n 1 137 LEU n 1 138 HIS n 1 139 ARG n 1 140 ASP n 1 141 ILE n 1 142 LYS n 1 143 ASP n 1 144 GLU n 1 145 ASN n 1 146 ILE n 1 147 LEU n 1 148 ILE n 1 149 ASP n 1 150 LEU n 1 151 ASN n 1 152 ARG n 1 153 GLY n 1 154 GLU n 1 155 LEU n 1 156 LYS n 1 157 LEU n 1 158 ILE n 1 159 ASP n 1 160 PHE n 1 161 GLY n 1 162 SER n 1 163 GLY n 1 164 ALA n 1 165 LEU n 1 166 LEU n 1 167 LYS n 1 168 ASP n 1 169 THR n 1 170 VAL n 1 171 TYR n 1 172 THR n 1 173 ASP n 1 174 PHE n 1 175 ASP n 1 176 GLY n 1 177 THR n 1 178 ARG n 1 179 VAL n 1 180 TYR n 1 181 SER n 1 182 PRO n 1 183 PRO n 1 184 GLU n 1 185 TRP n 1 186 ILE n 1 187 ARG n 1 188 TYR n 1 189 HIS n 1 190 ARG n 1 191 TYR n 1 192 HIS n 1 193 GLY n 1 194 ARG n 1 195 SER n 1 196 ALA n 1 197 ALA n 1 198 VAL n 1 199 TRP n 1 200 SER n 1 201 LEU n 1 202 GLY n 1 203 ILE n 1 204 LEU n 1 205 LEU n 1 206 TYR n 1 207 ASP n 1 208 MET n 1 209 VAL n 1 210 CYS n 1 211 GLY n 1 212 ASP n 1 213 ILE n 1 214 PRO n 1 215 PHE n 1 216 GLU n 1 217 HIS n 1 218 ASP n 1 219 GLU n 1 220 GLU n 1 221 ILE n 1 222 ILE n 1 223 ARG n 1 224 GLY n 1 225 GLN n 1 226 VAL n 1 227 PHE n 1 228 PHE n 1 229 ARG n 1 230 GLN n 1 231 ARG n 1 232 VAL n 1 233 SER n 1 234 SER n 1 235 GLU n 1 236 CYS n 1 237 GLN n 1 238 HIS n 1 239 LEU n 1 240 ILE n 1 241 ARG n 1 242 TRP n 1 243 CYS n 1 244 LEU n 1 245 ALA n 1 246 LEU n 1 247 ARG n 1 248 PRO n 1 249 SER n 1 250 ASP n 1 251 ARG n 1 252 PRO n 1 253 THR n 1 254 PHE n 1 255 GLU n 1 256 GLU n 1 257 ILE n 1 258 GLN n 1 259 ASN n 1 260 HIS n 1 261 PRO n 1 262 TRP n 1 263 MET n 1 264 GLN n 1 265 ASP n 1 266 VAL n 1 267 LEU n 1 268 LEU n 1 269 PRO n 1 270 GLN n 1 271 GLU n 1 272 THR n 1 273 ALA n 1 274 GLU n 1 275 ILE n 1 276 HIS n 1 277 LEU n 1 278 HIS n 1 279 SER n 1 280 LEU n 1 281 SER n 1 282 PRO n 1 283 GLY n 1 284 PRO n 1 285 SER n 1 286 LYS n 1 287 VAL n 1 288 ASP n 1 289 HIS n 1 290 HIS n 1 291 HIS n 1 292 HIS n 1 293 HIS n 1 294 HIS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene PIM1 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code PIM1_HUMAN _struct_ref.pdbx_db_accession P11309 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;KEKEPLESQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGVIRLLD WFERPDSFVLILERPEPVQDLFDFITERGALQEELARSFFWQVLEAVRHCHNCGVLHRDIKDENILIDLNRGELKLIDFG SGALLKDTVYTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDIPFEHDEEIIRGQVFFRQRVSSECQHLIR WCLALRPSDRPTFEEIQNHPWMQDVLLPQETAEIHLHSLSPGPSK ; _struct_ref.pdbx_align_begin 120 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3JXW _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 2 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 286 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P11309 _struct_ref_seq.db_align_beg 120 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 404 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 29 _struct_ref_seq.pdbx_auth_seq_align_end 313 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3JXW MET A 1 ? UNP P11309 ? ? 'INITIATING METHIONINE' 28 1 1 3JXW VAL A 287 ? UNP P11309 ? ? 'EXPRESSION TAG' 314 2 1 3JXW ASP A 288 ? UNP P11309 ? ? 'EXPRESSION TAG' 315 3 1 3JXW HIS A 289 ? UNP P11309 ? ? 'EXPRESSION TAG' 316 4 1 3JXW HIS A 290 ? UNP P11309 ? ? 'EXPRESSION TAG' 317 5 1 3JXW HIS A 291 ? UNP P11309 ? ? 'EXPRESSION TAG' 318 6 1 3JXW HIS A 292 ? UNP P11309 ? ? 'EXPRESSION TAG' 319 7 1 3JXW HIS A 293 ? UNP P11309 ? ? 'EXPRESSION TAG' 320 8 1 3JXW HIS A 294 ? UNP P11309 ? ? 'EXPRESSION TAG' 321 9 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LXG non-polymer . '8-[(E)-2-cyclopropylethenyl]-2-[(dimethylamino)methyl][1]benzothieno[3,2-d]pyrimidin-4(3H)-one' ? 'C18 H19 N3 O S' 325.428 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3JXW _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 3.31 _exptl_crystal.density_percent_sol 62.85 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pdbx_details 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MAR CCD 165 mm' _diffrn_detector.pdbx_collection_date ? _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.0000 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 17-BM' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 17-BM _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.0000 # _reflns.entry_id 3JXW _reflns.observed_criterion_sigma_I 2 _reflns.observed_criterion_sigma_F 2 _reflns.d_resolution_low 50.0 _reflns.d_resolution_high 2.80 _reflns.number_obs 11027 _reflns.number_all ? _reflns.percent_possible_obs 99.9 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _refine.entry_id 3JXW _refine.ls_number_reflns_obs 10468 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 42.56 _refine.ls_d_res_high 2.80 _refine.ls_percent_reflns_obs 99.98 _refine.ls_R_factor_obs 0.21898 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.21652 _refine.ls_R_factor_R_free 0.26645 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.8 _refine.ls_number_reflns_R_free 528 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.916 _refine.correlation_coeff_Fo_to_Fc_free 0.890 _refine.B_iso_mean 34.209 _refine.aniso_B[1][1] 0.05 _refine.aniso_B[2][2] 0.05 _refine.aniso_B[3][3] -0.08 _refine.aniso_B[1][2] 0.03 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'FOURIER SYNTHESIS' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.767 _refine.pdbx_overall_ESU_R_Free 0.352 _refine.overall_SU_ML 0.245 _refine.overall_SU_B 12.298 _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2230 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 23 _refine_hist.number_atoms_solvent 0 _refine_hist.number_atoms_total 2253 _refine_hist.d_res_high 2.80 _refine_hist.d_res_low 42.56 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.019 0.021 ? 2316 'X-RAY DIFFRACTION' ? r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.868 1.960 ? 3146 'X-RAY DIFFRACTION' ? r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 6.444 5.000 ? 273 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 34.401 23.136 ? 118 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 19.344 15.000 ? 381 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 21.312 15.000 ? 21 'X-RAY DIFFRACTION' ? r_chiral_restr 0.118 0.200 ? 332 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.006 0.020 ? 1825 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined 0.242 0.200 ? 996 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 0.325 0.200 ? 1558 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.155 0.200 ? 65 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.230 0.200 ? 26 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.208 0.200 ? 5 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 1.074 1.500 ? 1393 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it 1.840 2.000 ? 2211 'X-RAY DIFFRACTION' ? r_scbond_it 2.299 3.000 ? 1092 'X-RAY DIFFRACTION' ? r_scangle_it 3.756 4.500 ? 932 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.80 _refine_ls_shell.d_res_low 2.873 _refine_ls_shell.number_reflns_R_work 765 _refine_ls_shell.R_factor_R_work 0.485 _refine_ls_shell.percent_reflns_obs 100.00 _refine_ls_shell.R_factor_R_free 0.565 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 33 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3JXW _struct.title 'Discovery of 3H-benzo[4,5]thieno[3,2-d]pyrimidin-4-ones as Potent, Highly Selective and Orally Bioavailable Pim Kinases Inhibitors' _struct.pdbx_descriptor 'Proto-oncogene serine/threonine-protein kinase Pim-1 (E.C.2.7.11.1)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3JXW _struct_keywords.pdbx_keywords TRANSFERASE _struct_keywords.text ;Pim-1, Alternative initiation, ATP-binding, Cell membrane, Cytoplasm, Kinase, Manganese, Membrane, Metal-binding, Nucleotide-binding, Nucleus, Phosphoprotein, Polymorphism, Proto-oncogene, Serine/threonine-protein kinase, Transferase ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASP A 45 ? ILE A 47 ? ASP A 72 ILE A 74 5 ? 3 HELX_P HELX_P2 2 MET A 61 ? SER A 70 ? MET A 88 SER A 97 1 ? 10 HELX_P HELX_P3 3 LEU A 102 ? GLY A 110 ? LEU A 129 GLY A 137 1 ? 9 HELX_P HELX_P4 4 GLN A 113 ? CYS A 134 ? GLN A 140 CYS A 161 1 ? 22 HELX_P HELX_P5 5 LYS A 142 ? GLU A 144 ? LYS A 169 GLU A 171 5 ? 3 HELX_P HELX_P6 6 THR A 177 ? SER A 181 ? THR A 204 SER A 208 5 ? 5 HELX_P HELX_P7 7 PRO A 182 ? HIS A 189 ? PRO A 209 HIS A 216 1 ? 8 HELX_P HELX_P8 8 HIS A 192 ? GLY A 211 ? HIS A 219 GLY A 238 1 ? 20 HELX_P HELX_P9 9 HIS A 217 ? GLY A 224 ? HIS A 244 GLY A 251 1 ? 8 HELX_P HELX_P10 10 SER A 233 ? LEU A 244 ? SER A 260 LEU A 271 1 ? 12 HELX_P HELX_P11 11 ARG A 247 ? ARG A 251 ? ARG A 274 ARG A 278 5 ? 5 HELX_P HELX_P12 12 THR A 253 ? ASN A 259 ? THR A 280 ASN A 286 1 ? 7 HELX_P HELX_P13 13 HIS A 260 ? GLN A 264 ? HIS A 287 GLN A 291 5 ? 5 HELX_P HELX_P14 14 LEU A 268 ? LEU A 277 ? LEU A 295 LEU A 304 1 ? 10 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id GLU _struct_mon_prot_cis.label_seq_id 97 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id GLU _struct_mon_prot_cis.auth_seq_id 124 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 98 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 125 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle -11.00 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 5 ? B ? 2 ? C ? 3 ? D ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel B 1 2 ? anti-parallel C 1 2 ? anti-parallel C 2 3 ? anti-parallel D 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 TYR A 11 ? SER A 19 ? TYR A 38 SER A 46 A 2 SER A 24 ? ARG A 30 ? SER A 51 ARG A 57 A 3 PRO A 36 ? GLU A 43 ? PRO A 63 GLU A 70 A 4 SER A 88 ? GLU A 94 ? SER A 115 GLU A 121 A 5 LEU A 79 ? GLU A 84 ? LEU A 106 GLU A 111 B 1 TRP A 50 ? GLU A 52 ? TRP A 77 GLU A 79 B 2 ARG A 58 ? PRO A 60 ? ARG A 85 PRO A 87 C 1 VAL A 99 ? ASP A 101 ? VAL A 126 ASP A 128 C 2 ILE A 146 ? ASP A 149 ? ILE A 173 ASP A 176 C 3 GLU A 154 ? LEU A 157 ? GLU A 181 LEU A 184 D 1 VAL A 136 ? LEU A 137 ? VAL A 163 LEU A 164 D 2 ALA A 164 ? LEU A 165 ? ALA A 191 LEU A 192 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N LEU A 17 ? N LEU A 44 O VAL A 25 ? O VAL A 52 A 2 3 N GLY A 28 ? N GLY A 55 O VAL A 37 ? O VAL A 64 A 3 4 N LYS A 40 ? N LYS A 67 O LEU A 91 ? O LEU A 118 A 4 5 O ILE A 92 ? O ILE A 119 N ASP A 81 ? N ASP A 108 B 1 2 N GLY A 51 ? N GLY A 78 O VAL A 59 ? O VAL A 86 C 1 2 N GLN A 100 ? N GLN A 127 O ILE A 148 ? O ILE A 175 C 2 3 N LEU A 147 ? N LEU A 174 O LYS A 156 ? O LYS A 183 D 1 2 N LEU A 137 ? N LEU A 164 O ALA A 164 ? O ALA A 191 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id ? _struct_site.pdbx_auth_comp_id ? _struct_site.pdbx_auth_seq_id ? _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 12 _struct_site.details 'BINDING SITE FOR RESIDUE LXG A 1000' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 12 PHE A 22 ? PHE A 49 . ? 1_555 ? 2 AC1 12 VAL A 25 ? VAL A 52 . ? 1_555 ? 3 AC1 12 ALA A 38 ? ALA A 65 . ? 1_555 ? 4 AC1 12 LYS A 40 ? LYS A 67 . ? 1_555 ? 5 AC1 12 LEU A 93 ? LEU A 120 . ? 1_555 ? 6 AC1 12 GLU A 94 ? GLU A 121 . ? 1_555 ? 7 AC1 12 VAL A 99 ? VAL A 126 . ? 1_555 ? 8 AC1 12 GLU A 144 ? GLU A 171 . ? 1_555 ? 9 AC1 12 ASN A 145 ? ASN A 172 . ? 1_555 ? 10 AC1 12 LEU A 147 ? LEU A 174 . ? 1_555 ? 11 AC1 12 ILE A 158 ? ILE A 185 . ? 1_555 ? 12 AC1 12 ASP A 159 ? ASP A 186 . ? 1_555 ? # _database_PDB_matrix.entry_id 3JXW _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3JXW _atom_sites.fract_transf_matrix[1][1] 0.010173 _atom_sites.fract_transf_matrix[1][2] 0.005873 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.011747 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.012402 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 28 ? ? ? A . n A 1 2 LYS 2 29 ? ? ? A . n A 1 3 GLU 3 30 ? ? ? A . n A 1 4 LYS 4 31 ? ? ? A . n A 1 5 GLU 5 32 ? ? ? A . n A 1 6 PRO 6 33 33 PRO PRO A . n A 1 7 LEU 7 34 34 LEU LEU A . n A 1 8 GLU 8 35 35 GLU GLU A . n A 1 9 SER 9 36 36 SER SER A . n A 1 10 GLN 10 37 37 GLN GLN A . n A 1 11 TYR 11 38 38 TYR TYR A . n A 1 12 GLN 12 39 39 GLN GLN A . n A 1 13 VAL 13 40 40 VAL VAL A . n A 1 14 GLY 14 41 41 GLY GLY A . n A 1 15 PRO 15 42 42 PRO PRO A . n A 1 16 LEU 16 43 43 LEU LEU A . n A 1 17 LEU 17 44 44 LEU LEU A . n A 1 18 GLY 18 45 45 GLY GLY A . n A 1 19 SER 19 46 46 SER SER A . n A 1 20 GLY 20 47 47 GLY GLY A . n A 1 21 GLY 21 48 48 GLY GLY A . n A 1 22 PHE 22 49 49 PHE PHE A . n A 1 23 GLY 23 50 50 GLY GLY A . n A 1 24 SER 24 51 51 SER SER A . n A 1 25 VAL 25 52 52 VAL VAL A . n A 1 26 TYR 26 53 53 TYR TYR A . n A 1 27 SER 27 54 54 SER SER A . n A 1 28 GLY 28 55 55 GLY GLY A . n A 1 29 ILE 29 56 56 ILE ILE A . n A 1 30 ARG 30 57 57 ARG ARG A . n A 1 31 VAL 31 58 58 VAL VAL A . n A 1 32 SER 32 59 59 SER SER A . n A 1 33 ASP 33 60 60 ASP ASP A . n A 1 34 ASN 34 61 61 ASN ASN A . n A 1 35 LEU 35 62 62 LEU LEU A . n A 1 36 PRO 36 63 63 PRO PRO A . n A 1 37 VAL 37 64 64 VAL VAL A . n A 1 38 ALA 38 65 65 ALA ALA A . n A 1 39 ILE 39 66 66 ILE ILE A . n A 1 40 LYS 40 67 67 LYS LYS A . n A 1 41 HIS 41 68 68 HIS HIS A . n A 1 42 VAL 42 69 69 VAL VAL A . n A 1 43 GLU 43 70 70 GLU GLU A . n A 1 44 LYS 44 71 71 LYS LYS A . n A 1 45 ASP 45 72 72 ASP ASP A . n A 1 46 ARG 46 73 73 ARG ARG A . n A 1 47 ILE 47 74 74 ILE ILE A . n A 1 48 SER 48 75 75 SER SER A . n A 1 49 ASP 49 76 76 ASP ASP A . n A 1 50 TRP 50 77 77 TRP TRP A . n A 1 51 GLY 51 78 78 GLY GLY A . n A 1 52 GLU 52 79 79 GLU GLU A . n A 1 53 LEU 53 80 80 LEU LEU A . n A 1 54 PRO 54 81 81 PRO PRO A . n A 1 55 ASN 55 82 82 ASN ASN A . n A 1 56 GLY 56 83 83 GLY GLY A . n A 1 57 THR 57 84 84 THR THR A . n A 1 58 ARG 58 85 85 ARG ARG A . n A 1 59 VAL 59 86 86 VAL VAL A . n A 1 60 PRO 60 87 87 PRO PRO A . n A 1 61 MET 61 88 88 MET MET A . n A 1 62 GLU 62 89 89 GLU GLU A . n A 1 63 VAL 63 90 90 VAL VAL A . n A 1 64 VAL 64 91 91 VAL VAL A . n A 1 65 LEU 65 92 92 LEU LEU A . n A 1 66 LEU 66 93 93 LEU LEU A . n A 1 67 LYS 67 94 94 LYS LYS A . n A 1 68 LYS 68 95 95 LYS LYS A . n A 1 69 VAL 69 96 96 VAL VAL A . n A 1 70 SER 70 97 97 SER SER A . n A 1 71 SER 71 98 98 SER SER A . n A 1 72 GLY 72 99 99 GLY GLY A . n A 1 73 PHE 73 100 100 PHE PHE A . n A 1 74 SER 74 101 101 SER SER A . n A 1 75 GLY 75 102 102 GLY GLY A . n A 1 76 VAL 76 103 103 VAL VAL A . n A 1 77 ILE 77 104 104 ILE ILE A . n A 1 78 ARG 78 105 105 ARG ARG A . n A 1 79 LEU 79 106 106 LEU LEU A . n A 1 80 LEU 80 107 107 LEU LEU A . n A 1 81 ASP 81 108 108 ASP ASP A . n A 1 82 TRP 82 109 109 TRP TRP A . n A 1 83 PHE 83 110 110 PHE PHE A . n A 1 84 GLU 84 111 111 GLU GLU A . n A 1 85 ARG 85 112 112 ARG ARG A . n A 1 86 PRO 86 113 113 PRO PRO A . n A 1 87 ASP 87 114 114 ASP ASP A . n A 1 88 SER 88 115 115 SER SER A . n A 1 89 PHE 89 116 116 PHE PHE A . n A 1 90 VAL 90 117 117 VAL VAL A . n A 1 91 LEU 91 118 118 LEU LEU A . n A 1 92 ILE 92 119 119 ILE ILE A . n A 1 93 LEU 93 120 120 LEU LEU A . n A 1 94 GLU 94 121 121 GLU GLU A . n A 1 95 ARG 95 122 122 ARG ARG A . n A 1 96 PRO 96 123 123 PRO PRO A . n A 1 97 GLU 97 124 124 GLU GLU A . n A 1 98 PRO 98 125 125 PRO PRO A . n A 1 99 VAL 99 126 126 VAL VAL A . n A 1 100 GLN 100 127 127 GLN GLN A . n A 1 101 ASP 101 128 128 ASP ASP A . n A 1 102 LEU 102 129 129 LEU LEU A . n A 1 103 PHE 103 130 130 PHE PHE A . n A 1 104 ASP 104 131 131 ASP ASP A . n A 1 105 PHE 105 132 132 PHE PHE A . n A 1 106 ILE 106 133 133 ILE ILE A . n A 1 107 THR 107 134 134 THR THR A . n A 1 108 GLU 108 135 135 GLU GLU A . n A 1 109 ARG 109 136 136 ARG ARG A . n A 1 110 GLY 110 137 137 GLY GLY A . n A 1 111 ALA 111 138 138 ALA ALA A . n A 1 112 LEU 112 139 139 LEU LEU A . n A 1 113 GLN 113 140 140 GLN GLN A . n A 1 114 GLU 114 141 141 GLU GLU A . n A 1 115 GLU 115 142 142 GLU GLU A . n A 1 116 LEU 116 143 143 LEU LEU A . n A 1 117 ALA 117 144 144 ALA ALA A . n A 1 118 ARG 118 145 145 ARG ARG A . n A 1 119 SER 119 146 146 SER SER A . n A 1 120 PHE 120 147 147 PHE PHE A . n A 1 121 PHE 121 148 148 PHE PHE A . n A 1 122 TRP 122 149 149 TRP TRP A . n A 1 123 GLN 123 150 150 GLN GLN A . n A 1 124 VAL 124 151 151 VAL VAL A . n A 1 125 LEU 125 152 152 LEU LEU A . n A 1 126 GLU 126 153 153 GLU GLU A . n A 1 127 ALA 127 154 154 ALA ALA A . n A 1 128 VAL 128 155 155 VAL VAL A . n A 1 129 ARG 129 156 156 ARG ARG A . n A 1 130 HIS 130 157 157 HIS HIS A . n A 1 131 CYS 131 158 158 CYS CYS A . n A 1 132 HIS 132 159 159 HIS HIS A . n A 1 133 ASN 133 160 160 ASN ASN A . n A 1 134 CYS 134 161 161 CYS CYS A . n A 1 135 GLY 135 162 162 GLY GLY A . n A 1 136 VAL 136 163 163 VAL VAL A . n A 1 137 LEU 137 164 164 LEU LEU A . n A 1 138 HIS 138 165 165 HIS HIS A . n A 1 139 ARG 139 166 166 ARG ARG A . n A 1 140 ASP 140 167 167 ASP ASP A . n A 1 141 ILE 141 168 168 ILE ILE A . n A 1 142 LYS 142 169 169 LYS LYS A . n A 1 143 ASP 143 170 170 ASP ASP A . n A 1 144 GLU 144 171 171 GLU GLU A . n A 1 145 ASN 145 172 172 ASN ASN A . n A 1 146 ILE 146 173 173 ILE ILE A . n A 1 147 LEU 147 174 174 LEU LEU A . n A 1 148 ILE 148 175 175 ILE ILE A . n A 1 149 ASP 149 176 176 ASP ASP A . n A 1 150 LEU 150 177 177 LEU LEU A . n A 1 151 ASN 151 178 178 ASN ASN A . n A 1 152 ARG 152 179 179 ARG ARG A . n A 1 153 GLY 153 180 180 GLY GLY A . n A 1 154 GLU 154 181 181 GLU GLU A . n A 1 155 LEU 155 182 182 LEU LEU A . n A 1 156 LYS 156 183 183 LYS LYS A . n A 1 157 LEU 157 184 184 LEU LEU A . n A 1 158 ILE 158 185 185 ILE ILE A . n A 1 159 ASP 159 186 186 ASP ASP A . n A 1 160 PHE 160 187 187 PHE PHE A . n A 1 161 GLY 161 188 188 GLY GLY A . n A 1 162 SER 162 189 189 SER SER A . n A 1 163 GLY 163 190 190 GLY GLY A . n A 1 164 ALA 164 191 191 ALA ALA A . n A 1 165 LEU 165 192 192 LEU LEU A . n A 1 166 LEU 166 193 193 LEU LEU A . n A 1 167 LYS 167 194 194 LYS LYS A . n A 1 168 ASP 168 195 195 ASP ASP A . n A 1 169 THR 169 196 196 THR THR A . n A 1 170 VAL 170 197 197 VAL VAL A . n A 1 171 TYR 171 198 198 TYR TYR A . n A 1 172 THR 172 199 199 THR THR A . n A 1 173 ASP 173 200 200 ASP ASP A . n A 1 174 PHE 174 201 201 PHE PHE A . n A 1 175 ASP 175 202 202 ASP ASP A . n A 1 176 GLY 176 203 203 GLY GLY A . n A 1 177 THR 177 204 204 THR THR A . n A 1 178 ARG 178 205 205 ARG ARG A . n A 1 179 VAL 179 206 206 VAL VAL A . n A 1 180 TYR 180 207 207 TYR TYR A . n A 1 181 SER 181 208 208 SER SER A . n A 1 182 PRO 182 209 209 PRO PRO A . n A 1 183 PRO 183 210 210 PRO PRO A . n A 1 184 GLU 184 211 211 GLU GLU A . n A 1 185 TRP 185 212 212 TRP TRP A . n A 1 186 ILE 186 213 213 ILE ILE A . n A 1 187 ARG 187 214 214 ARG ARG A . n A 1 188 TYR 188 215 215 TYR TYR A . n A 1 189 HIS 189 216 216 HIS HIS A . n A 1 190 ARG 190 217 217 ARG ARG A . n A 1 191 TYR 191 218 218 TYR TYR A . n A 1 192 HIS 192 219 219 HIS HIS A . n A 1 193 GLY 193 220 220 GLY GLY A . n A 1 194 ARG 194 221 221 ARG ARG A . n A 1 195 SER 195 222 222 SER SER A . n A 1 196 ALA 196 223 223 ALA ALA A . n A 1 197 ALA 197 224 224 ALA ALA A . n A 1 198 VAL 198 225 225 VAL VAL A . n A 1 199 TRP 199 226 226 TRP TRP A . n A 1 200 SER 200 227 227 SER SER A . n A 1 201 LEU 201 228 228 LEU LEU A . n A 1 202 GLY 202 229 229 GLY GLY A . n A 1 203 ILE 203 230 230 ILE ILE A . n A 1 204 LEU 204 231 231 LEU LEU A . n A 1 205 LEU 205 232 232 LEU LEU A . n A 1 206 TYR 206 233 233 TYR TYR A . n A 1 207 ASP 207 234 234 ASP ASP A . n A 1 208 MET 208 235 235 MET MET A . n A 1 209 VAL 209 236 236 VAL VAL A . n A 1 210 CYS 210 237 237 CYS CYS A . n A 1 211 GLY 211 238 238 GLY GLY A . n A 1 212 ASP 212 239 239 ASP ASP A . n A 1 213 ILE 213 240 240 ILE ILE A . n A 1 214 PRO 214 241 241 PRO PRO A . n A 1 215 PHE 215 242 242 PHE PHE A . n A 1 216 GLU 216 243 243 GLU GLU A . n A 1 217 HIS 217 244 244 HIS HIS A . n A 1 218 ASP 218 245 245 ASP ASP A . n A 1 219 GLU 219 246 246 GLU GLU A . n A 1 220 GLU 220 247 247 GLU GLU A . n A 1 221 ILE 221 248 248 ILE ILE A . n A 1 222 ILE 222 249 249 ILE ILE A . n A 1 223 ARG 223 250 250 ARG ARG A . n A 1 224 GLY 224 251 251 GLY GLY A . n A 1 225 GLN 225 252 252 GLN GLN A . n A 1 226 VAL 226 253 253 VAL VAL A . n A 1 227 PHE 227 254 254 PHE PHE A . n A 1 228 PHE 228 255 255 PHE PHE A . n A 1 229 ARG 229 256 256 ARG ARG A . n A 1 230 GLN 230 257 257 GLN GLN A . n A 1 231 ARG 231 258 258 ARG ARG A . n A 1 232 VAL 232 259 259 VAL VAL A . n A 1 233 SER 233 260 260 SER SER A . n A 1 234 SER 234 261 261 SER SER A . n A 1 235 GLU 235 262 262 GLU GLU A . n A 1 236 CYS 236 263 263 CYS CYS A . n A 1 237 GLN 237 264 264 GLN GLN A . n A 1 238 HIS 238 265 265 HIS HIS A . n A 1 239 LEU 239 266 266 LEU LEU A . n A 1 240 ILE 240 267 267 ILE ILE A . n A 1 241 ARG 241 268 268 ARG ARG A . n A 1 242 TRP 242 269 269 TRP TRP A . n A 1 243 CYS 243 270 270 CYS CYS A . n A 1 244 LEU 244 271 271 LEU LEU A . n A 1 245 ALA 245 272 272 ALA ALA A . n A 1 246 LEU 246 273 273 LEU LEU A . n A 1 247 ARG 247 274 274 ARG ARG A . n A 1 248 PRO 248 275 275 PRO PRO A . n A 1 249 SER 249 276 276 SER SER A . n A 1 250 ASP 250 277 277 ASP ASP A . n A 1 251 ARG 251 278 278 ARG ARG A . n A 1 252 PRO 252 279 279 PRO PRO A . n A 1 253 THR 253 280 280 THR THR A . n A 1 254 PHE 254 281 281 PHE PHE A . n A 1 255 GLU 255 282 282 GLU GLU A . n A 1 256 GLU 256 283 283 GLU GLU A . n A 1 257 ILE 257 284 284 ILE ILE A . n A 1 258 GLN 258 285 285 GLN GLN A . n A 1 259 ASN 259 286 286 ASN ASN A . n A 1 260 HIS 260 287 287 HIS HIS A . n A 1 261 PRO 261 288 288 PRO PRO A . n A 1 262 TRP 262 289 289 TRP TRP A . n A 1 263 MET 263 290 290 MET MET A . n A 1 264 GLN 264 291 291 GLN GLN A . n A 1 265 ASP 265 292 292 ASP ASP A . n A 1 266 VAL 266 293 293 VAL VAL A . n A 1 267 LEU 267 294 294 LEU LEU A . n A 1 268 LEU 268 295 295 LEU LEU A . n A 1 269 PRO 269 296 296 PRO PRO A . n A 1 270 GLN 270 297 297 GLN GLN A . n A 1 271 GLU 271 298 298 GLU GLU A . n A 1 272 THR 272 299 299 THR THR A . n A 1 273 ALA 273 300 300 ALA ALA A . n A 1 274 GLU 274 301 301 GLU GLU A . n A 1 275 ILE 275 302 302 ILE ILE A . n A 1 276 HIS 276 303 303 HIS HIS A . n A 1 277 LEU 277 304 304 LEU LEU A . n A 1 278 HIS 278 305 305 HIS HIS A . n A 1 279 SER 279 306 306 SER SER A . n A 1 280 LEU 280 307 ? ? ? A . n A 1 281 SER 281 308 ? ? ? A . n A 1 282 PRO 282 309 ? ? ? A . n A 1 283 GLY 283 310 ? ? ? A . n A 1 284 PRO 284 311 ? ? ? A . n A 1 285 SER 285 312 ? ? ? A . n A 1 286 LYS 286 313 ? ? ? A . n A 1 287 VAL 287 314 ? ? ? A . n A 1 288 ASP 288 315 ? ? ? A . n A 1 289 HIS 289 316 ? ? ? A . n A 1 290 HIS 290 317 ? ? ? A . n A 1 291 HIS 291 318 ? ? ? A . n A 1 292 HIS 292 319 ? ? ? A . n A 1 293 HIS 293 320 ? ? ? A . n A 1 294 HIS 294 321 ? ? ? A . n # _pdbx_nonpoly_scheme.asym_id B _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id LXG _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 1000 _pdbx_nonpoly_scheme.auth_seq_num 1000 _pdbx_nonpoly_scheme.pdb_mon_id LXG _pdbx_nonpoly_scheme.auth_mon_id LXG _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.pdb_ins_code . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2009-11-10 2 'Structure model' 1 1 2011-07-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Version format compliance' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal HKL-2000 'data collection' . ? 1 REFMAC refinement 5.2.0019 ? 2 HKL-2000 'data reduction' . ? 3 HKL-2000 'data scaling' . ? 4 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 C A ARG 112 ? ? N A PRO 113 ? ? CA A PRO 113 ? ? 109.07 119.30 -10.23 1.50 Y 2 1 CB A ASP 128 ? ? CG A ASP 128 ? ? OD1 A ASP 128 ? ? 123.81 118.30 5.51 0.90 N 3 1 NE A ARG 258 ? ? CZ A ARG 258 ? ? NH2 A ARG 258 ? ? 116.75 120.30 -3.55 0.50 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LEU A 34 ? ? 75.81 -172.61 2 1 GLU A 35 ? ? -102.44 48.26 3 1 SER A 46 ? ? -145.51 -149.72 4 1 SER A 59 ? ? -27.32 -26.92 5 1 ASP A 60 ? ? -173.82 20.18 6 1 ASN A 82 ? ? -33.95 -25.18 7 1 SER A 98 ? ? 165.15 -166.07 8 1 ASP A 167 ? ? -146.69 46.10 9 1 ASP A 186 ? ? 73.18 86.78 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET 28 ? A MET 1 2 1 Y 1 A LYS 29 ? A LYS 2 3 1 Y 1 A GLU 30 ? A GLU 3 4 1 Y 1 A LYS 31 ? A LYS 4 5 1 Y 1 A GLU 32 ? A GLU 5 6 1 Y 1 A LEU 307 ? A LEU 280 7 1 Y 1 A SER 308 ? A SER 281 8 1 Y 1 A PRO 309 ? A PRO 282 9 1 Y 1 A GLY 310 ? A GLY 283 10 1 Y 1 A PRO 311 ? A PRO 284 11 1 Y 1 A SER 312 ? A SER 285 12 1 Y 1 A LYS 313 ? A LYS 286 13 1 Y 1 A VAL 314 ? A VAL 287 14 1 Y 1 A ASP 315 ? A ASP 288 15 1 Y 1 A HIS 316 ? A HIS 289 16 1 Y 1 A HIS 317 ? A HIS 290 17 1 Y 1 A HIS 318 ? A HIS 291 18 1 Y 1 A HIS 319 ? A HIS 292 19 1 Y 1 A HIS 320 ? A HIS 293 20 1 Y 1 A HIS 321 ? A HIS 294 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name '8-[(E)-2-cyclopropylethenyl]-2-[(dimethylamino)methyl][1]benzothieno[3,2-d]pyrimidin-4(3H)-one' _pdbx_entity_nonpoly.comp_id LXG #