data_3JXY # _entry.id 3JXY # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.378 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3JXY pdb_00003jxy 10.2210/pdb3jxy/pdb NDB NA0171 ? ? RCSB RCSB055299 ? ? WWPDB D_1000055299 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 3BVS 'Crystal Structure of Bacillus cereus Alkylpuring DNA Glycosylase AlkD' unspecified PDB 3JX7 'Bacillus cereus Alkylpurine DNA Glycosylase AlkD Bound to DNA Containing a 3mA Analog' unspecified PDB 3JXZ 'Bacillus cereus Alkylpurine DNA Glycosylase AlkD Bound to DNA Containing an Abasic Site (across from T)' unspecified PDB 3JY1 'Bacillus cereus Alkylpurine DNA Glycosylase AlkD Bound to DNA Containing an Abasic Site (across from C)' unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3JXY _pdbx_database_status.recvd_initial_deposition_date 2009-09-21 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Rubinson, E.H.' 1 'Eichman, B.F.' 2 # _citation.id primary _citation.title 'An unprecedented nucleic acid capture mechanism for excision of DNA damage.' _citation.journal_abbrev Nature _citation.journal_volume 468 _citation.page_first 406 _citation.page_last 411 _citation.year 2010 _citation.journal_id_ASTM NATUAS _citation.country UK _citation.journal_id_ISSN 0028-0836 _citation.journal_id_CSD 0006 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 20927102 _citation.pdbx_database_id_DOI 10.1038/nature09428 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Rubinson, E.H.' 1 ? primary 'Gowda, A.S.' 2 ? primary 'Spratt, T.E.' 3 ? primary 'Gold, B.' 4 ? primary 'Eichman, B.F.' 5 ? # _cell.entry_id 3JXY _cell.length_a 38.200 _cell.length_b 93.594 _cell.length_c 48.118 _cell.angle_alpha 90.00 _cell.angle_beta 112.60 _cell.angle_gamma 90.00 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3JXY _symmetry.space_group_name_H-M 'P 1 21 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'alkylpurine DNA glycosylase AlkD' 27724.082 1 ? ? ? ? 2 polymer syn ;DNA (5'-D(*CP*GP*GP*AP*CP*TP*GP*AP*CP*GP*GP*G)-3') ; 3728.429 1 ? ? ? ? 3 polymer syn ;DNA (5'-D(*CP*CP*CP*GP*TP*TP*AP*GP*TP*CP*CP*G)-3') ; 3614.354 1 ? ? ? ? 4 water nat water 18.015 525 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;PMHPFVKALQEHFTAHQNPEKAEPMARYMKNHFLFLGIQTPERRQLLKDIIQIHTLPDQKDFQIIIRELWDLPEREFQAA ALDIMQKYKKHINETHIPFLEELIVTKSWWDSVDSIVPTFLGDIFLKHPELISAYIPKWIASDNIWLQRAAILFQLKYKQ KMDEELLFWIIGQLHSSKEFFIQKAIGWVLREYAKTNPDVVWEYVQNNELAPLSKREAIKHIKQNYGINNEK ; ;PMHPFVKALQEHFTAHQNPEKAEPMARYMKNHFLFLGIQTPERRQLLKDIIQIHTLPDQKDFQIIIRELWDLPEREFQAA ALDIMQKYKKHINETHIPFLEELIVTKSWWDSVDSIVPTFLGDIFLKHPELISAYIPKWIASDNIWLQRAAILFQLKYKQ KMDEELLFWIIGQLHSSKEFFIQKAIGWVLREYAKTNPDVVWEYVQNNELAPLSKREAIKHIKQNYGINNEK ; A ? 2 polydeoxyribonucleotide no no '(DC)(DG)(DG)(DA)(DC)(DT)(DG)(DA)(DC)(DG)(DG)(DG)' CGGACTGACGGG B ? 3 polydeoxyribonucleotide no no '(DC)(DC)(DC)(DG)(DT)(DT)(DA)(DG)(DT)(DC)(DC)(DG)' CCCGTTAGTCCG C ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 PRO n 1 2 MET n 1 3 HIS n 1 4 PRO n 1 5 PHE n 1 6 VAL n 1 7 LYS n 1 8 ALA n 1 9 LEU n 1 10 GLN n 1 11 GLU n 1 12 HIS n 1 13 PHE n 1 14 THR n 1 15 ALA n 1 16 HIS n 1 17 GLN n 1 18 ASN n 1 19 PRO n 1 20 GLU n 1 21 LYS n 1 22 ALA n 1 23 GLU n 1 24 PRO n 1 25 MET n 1 26 ALA n 1 27 ARG n 1 28 TYR n 1 29 MET n 1 30 LYS n 1 31 ASN n 1 32 HIS n 1 33 PHE n 1 34 LEU n 1 35 PHE n 1 36 LEU n 1 37 GLY n 1 38 ILE n 1 39 GLN n 1 40 THR n 1 41 PRO n 1 42 GLU n 1 43 ARG n 1 44 ARG n 1 45 GLN n 1 46 LEU n 1 47 LEU n 1 48 LYS n 1 49 ASP n 1 50 ILE n 1 51 ILE n 1 52 GLN n 1 53 ILE n 1 54 HIS n 1 55 THR n 1 56 LEU n 1 57 PRO n 1 58 ASP n 1 59 GLN n 1 60 LYS n 1 61 ASP n 1 62 PHE n 1 63 GLN n 1 64 ILE n 1 65 ILE n 1 66 ILE n 1 67 ARG n 1 68 GLU n 1 69 LEU n 1 70 TRP n 1 71 ASP n 1 72 LEU n 1 73 PRO n 1 74 GLU n 1 75 ARG n 1 76 GLU n 1 77 PHE n 1 78 GLN n 1 79 ALA n 1 80 ALA n 1 81 ALA n 1 82 LEU n 1 83 ASP n 1 84 ILE n 1 85 MET n 1 86 GLN n 1 87 LYS n 1 88 TYR n 1 89 LYS n 1 90 LYS n 1 91 HIS n 1 92 ILE n 1 93 ASN n 1 94 GLU n 1 95 THR n 1 96 HIS n 1 97 ILE n 1 98 PRO n 1 99 PHE n 1 100 LEU n 1 101 GLU n 1 102 GLU n 1 103 LEU n 1 104 ILE n 1 105 VAL n 1 106 THR n 1 107 LYS n 1 108 SER n 1 109 TRP n 1 110 TRP n 1 111 ASP n 1 112 SER n 1 113 VAL n 1 114 ASP n 1 115 SER n 1 116 ILE n 1 117 VAL n 1 118 PRO n 1 119 THR n 1 120 PHE n 1 121 LEU n 1 122 GLY n 1 123 ASP n 1 124 ILE n 1 125 PHE n 1 126 LEU n 1 127 LYS n 1 128 HIS n 1 129 PRO n 1 130 GLU n 1 131 LEU n 1 132 ILE n 1 133 SER n 1 134 ALA n 1 135 TYR n 1 136 ILE n 1 137 PRO n 1 138 LYS n 1 139 TRP n 1 140 ILE n 1 141 ALA n 1 142 SER n 1 143 ASP n 1 144 ASN n 1 145 ILE n 1 146 TRP n 1 147 LEU n 1 148 GLN n 1 149 ARG n 1 150 ALA n 1 151 ALA n 1 152 ILE n 1 153 LEU n 1 154 PHE n 1 155 GLN n 1 156 LEU n 1 157 LYS n 1 158 TYR n 1 159 LYS n 1 160 GLN n 1 161 LYS n 1 162 MET n 1 163 ASP n 1 164 GLU n 1 165 GLU n 1 166 LEU n 1 167 LEU n 1 168 PHE n 1 169 TRP n 1 170 ILE n 1 171 ILE n 1 172 GLY n 1 173 GLN n 1 174 LEU n 1 175 HIS n 1 176 SER n 1 177 SER n 1 178 LYS n 1 179 GLU n 1 180 PHE n 1 181 PHE n 1 182 ILE n 1 183 GLN n 1 184 LYS n 1 185 ALA n 1 186 ILE n 1 187 GLY n 1 188 TRP n 1 189 VAL n 1 190 LEU n 1 191 ARG n 1 192 GLU n 1 193 TYR n 1 194 ALA n 1 195 LYS n 1 196 THR n 1 197 ASN n 1 198 PRO n 1 199 ASP n 1 200 VAL n 1 201 VAL n 1 202 TRP n 1 203 GLU n 1 204 TYR n 1 205 VAL n 1 206 GLN n 1 207 ASN n 1 208 ASN n 1 209 GLU n 1 210 LEU n 1 211 ALA n 1 212 PRO n 1 213 LEU n 1 214 SER n 1 215 LYS n 1 216 ARG n 1 217 GLU n 1 218 ALA n 1 219 ILE n 1 220 LYS n 1 221 HIS n 1 222 ILE n 1 223 LYS n 1 224 GLN n 1 225 ASN n 1 226 TYR n 1 227 GLY n 1 228 ILE n 1 229 ASN n 1 230 ASN n 1 231 GLU n 1 232 LYS n 2 1 DC n 2 2 DG n 2 3 DG n 2 4 DA n 2 5 DC n 2 6 DT n 2 7 DG n 2 8 DA n 2 9 DC n 2 10 DG n 2 11 DG n 2 12 DG n 3 1 DC n 3 2 DC n 3 3 DC n 3 4 DG n 3 5 DT n 3 6 DT n 3 7 DA n 3 8 DG n 3 9 DT n 3 10 DC n 3 11 DC n 3 12 DG n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'AlkD, BC_4913' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain 'ATCC 10987' _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Bacillus cereus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 222523 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain HMS174 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pBG103 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _struct_ref.entity_id _struct_ref.pdbx_db_accession _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_db_isoform 1 Q816E8 1 UNP Q816E8_BACCR 1 ;MHPFVKALQEHFTAHQNPEKAEPMARYMKNHFLFLGIQTPERRQLLKDIIQIHTLPDQKDFQIIIRELWDLPEREFQAAA LDIMQKYKKHINETHIPFLEELIVTKSWWDSVDSIVPTFLGDIFLKHPELISAYIPKWIASDNIWLQRAAILFQLKYKQK MDEELLFWIIGQLHSSKEFFIQKAIGWVLREYAKTNPDVVWEYVQNNELAPLSKREAIKHIKQNYGINNEK ; ? 2 3JXY 2 PDB 3JXY 1 CGGACTGACGGG ? 3 3JXY 3 PDB 3JXY 1 CCCGTTAGTCCG ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3JXY A 2 ? 232 ? Q816E8 1 ? 231 ? 1 231 2 2 3JXY B 1 ? 12 ? 3JXY 1 ? 12 ? 1 12 3 3 3JXY C 1 ? 12 ? 3JXY 1 ? 12 ? 1 12 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 3JXY _struct_ref_seq_dif.mon_id PRO _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 1 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code Q816E8 _struct_ref_seq_dif.db_mon_id ? _struct_ref_seq_dif.pdbx_seq_db_seq_num ? _struct_ref_seq_dif.details 'expression tag' _struct_ref_seq_dif.pdbx_auth_seq_num 0 _struct_ref_seq_dif.pdbx_ordinal 1 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3JXY _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.26 _exptl_crystal.density_percent_sol 45.69 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 294 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details '0.1 M BisTris pH 5.5, 25% PEG 3350, VAPOR DIFFUSION, SITTING DROP, temperature 294K' # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 300 mm CCD' _diffrn_detector.pdbx_collection_date 2007-11-11 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Si(111)' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength .97850 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 21-ID-G' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 21-ID-G _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list .97850 # _reflns.entry_id 3JXY _reflns.observed_criterion_sigma_I 0 _reflns.observed_criterion_sigma_F 0 _reflns.d_resolution_low 35.3 _reflns.d_resolution_high 1.5 _reflns.number_obs 46379 _reflns.number_all 49763 _reflns.percent_possible_obs 93.2 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value .043 _reflns.pdbx_netI_over_sigmaI 22.0 _reflns.B_iso_Wilson_estimate 17.2 _reflns.pdbx_redundancy 3.8 _reflns.R_free_details ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.5 _reflns_shell.d_res_low 1.55 _reflns_shell.percent_possible_all 87.2 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value .186 _reflns_shell.meanI_over_sigI_obs 4.9 _reflns_shell.pdbx_redundancy 3.8 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 3JXY _refine.ls_number_reflns_obs 46341 _refine.ls_number_reflns_all 46351 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.42 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 28.164 _refine.ls_d_res_high 1.500 _refine.ls_percent_reflns_obs 92.94 _refine.ls_R_factor_obs 0.1326 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.1304 _refine.ls_R_factor_R_free 0.1735 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.12 _refine.ls_number_reflns_R_free 2374 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 24.2 _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol 0.404 _refine.solvent_model_param_bsol 66.521 _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model 'PDB 3JX7' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.17 _refine.pdbx_overall_phase_error 16.75 _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1945 _refine_hist.pdbx_number_atoms_nucleic_acid 487 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 525 _refine_hist.number_atoms_total 2957 _refine_hist.d_res_high 1.500 _refine_hist.d_res_low 28.164 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function f_bond_d 0.005 ? ? 2552 'X-RAY DIFFRACTION' ? f_angle_d 0.986 ? ? 3558 'X-RAY DIFFRACTION' ? f_dihedral_angle_d 19.906 ? ? 975 'X-RAY DIFFRACTION' ? f_chiral_restr 0.066 ? ? 384 'X-RAY DIFFRACTION' ? f_plane_restr 0.004 ? ? 366 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.number_reflns_obs 'X-RAY DIFFRACTION' . 1.5001 1.5307 2332 0.1075 83.00 0.2054 . . 122 . . . . 'X-RAY DIFFRACTION' . 1.5307 1.5640 2392 0.1011 87.00 0.1855 . . 126 . . . . 'X-RAY DIFFRACTION' . 1.5640 1.6004 2446 0.0995 88.00 0.1979 . . 129 . . . . 'X-RAY DIFFRACTION' . 1.6004 1.6404 2478 0.0971 89.00 0.1942 . . 114 . . . . 'X-RAY DIFFRACTION' . 1.6404 1.6847 2479 0.0941 89.00 0.1748 . . 141 . . . . 'X-RAY DIFFRACTION' . 1.6847 1.7343 2535 0.0971 90.00 0.1582 . . 129 . . . . 'X-RAY DIFFRACTION' . 1.7343 1.7903 2510 0.0984 91.00 0.1789 . . 153 . . . . 'X-RAY DIFFRACTION' . 1.7903 1.8543 2541 0.1073 92.00 0.1762 . . 148 . . . . 'X-RAY DIFFRACTION' . 1.8543 1.9285 2588 0.1059 93.00 0.1822 . . 143 . . . . 'X-RAY DIFFRACTION' . 1.9285 2.0162 2646 0.1079 94.00 0.1651 . . 133 . . . . 'X-RAY DIFFRACTION' . 2.0162 2.1225 2622 0.1083 95.00 0.1709 . . 161 . . . . 'X-RAY DIFFRACTION' . 2.1225 2.2554 2669 0.1054 97.00 0.1632 . . 157 . . . . 'X-RAY DIFFRACTION' . 2.2554 2.4295 2735 0.1120 98.00 0.1581 . . 129 . . . . 'X-RAY DIFFRACTION' . 2.4295 2.6738 2750 0.1223 98.00 0.1672 . . 142 . . . . 'X-RAY DIFFRACTION' . 2.6738 3.0603 2733 0.1202 98.00 0.1669 . . 146 . . . . 'X-RAY DIFFRACTION' . 3.0603 3.8541 2774 0.1144 98.00 0.1266 . . 141 . . . . 'X-RAY DIFFRACTION' . 3.8541 28.1690 2737 0.1591 97.00 0.1774 . . 160 . . . . # _struct.entry_id 3JXY _struct.title 'Bacillus cereus Alkylpurine DNA Glycosylase AlkD Bound to DNA Containing a GT Mismatch' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3JXY _struct_keywords.pdbx_keywords hydrolase/DNA _struct_keywords.text 'HEAT repeat, DNA binding, DNA glycosylase, DNA alkylation, lyase-DNA COMPLEX, hydrolase-DNA COMPLEX' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 4 ? F N N 4 ? # _struct_biol.id 1 _struct_biol.details 'biological unit is asymmetric unit' # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 HIS A 3 ? ALA A 15 ? HIS A 2 ALA A 14 1 ? 13 HELX_P HELX_P2 2 ASN A 18 ? MET A 29 ? ASN A 17 MET A 28 1 ? 12 HELX_P HELX_P3 3 GLN A 39 ? THR A 55 ? GLN A 38 THR A 54 1 ? 17 HELX_P HELX_P4 4 ASP A 58 ? LYS A 60 ? ASP A 57 LYS A 59 5 ? 3 HELX_P HELX_P5 5 ASP A 61 ? ASP A 71 ? ASP A 60 ASP A 70 1 ? 11 HELX_P HELX_P6 6 GLU A 74 ? TYR A 88 ? GLU A 73 TYR A 87 1 ? 15 HELX_P HELX_P7 7 LYS A 89 ? ILE A 92 ? LYS A 88 ILE A 91 5 ? 4 HELX_P HELX_P8 8 ASN A 93 ? THR A 95 ? ASN A 92 THR A 94 5 ? 3 HELX_P HELX_P9 9 HIS A 96 ? VAL A 105 ? HIS A 95 VAL A 104 1 ? 10 HELX_P HELX_P10 10 TRP A 109 ? VAL A 117 ? TRP A 108 VAL A 116 1 ? 9 HELX_P HELX_P11 11 THR A 119 ? HIS A 128 ? THR A 118 HIS A 127 1 ? 10 HELX_P HELX_P12 12 PRO A 129 ? ALA A 134 ? PRO A 128 ALA A 133 5 ? 6 HELX_P HELX_P13 13 TYR A 135 ? SER A 142 ? TYR A 134 SER A 141 1 ? 8 HELX_P HELX_P14 14 ASN A 144 ? PHE A 154 ? ASN A 143 PHE A 153 1 ? 11 HELX_P HELX_P15 15 TYR A 158 ? MET A 162 ? TYR A 157 MET A 161 5 ? 5 HELX_P HELX_P16 16 ASP A 163 ? HIS A 175 ? ASP A 162 HIS A 174 1 ? 13 HELX_P HELX_P17 17 GLU A 179 ? ALA A 194 ? GLU A 178 ALA A 193 1 ? 16 HELX_P HELX_P18 18 ASN A 197 ? ASN A 208 ? ASN A 196 ASN A 207 1 ? 12 HELX_P HELX_P19 19 ALA A 211 ? ILE A 219 ? ALA A 210 ILE A 218 1 ? 9 HELX_P HELX_P20 20 ILE A 222 ? GLY A 227 ? ILE A 221 GLY A 226 1 ? 6 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? B DC 1 N3 ? ? ? 1_555 C DG 12 N1 ? ? B DC 1 C DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? B DC 1 N4 ? ? ? 1_555 C DG 12 O6 ? ? B DC 1 C DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? B DC 1 O2 ? ? ? 1_555 C DG 12 N2 ? ? B DC 1 C DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? B DG 2 N1 ? ? ? 1_555 C DC 11 N3 ? ? B DG 2 C DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? B DG 2 N2 ? ? ? 1_555 C DC 11 O2 ? ? B DG 2 C DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? B DG 2 O6 ? ? ? 1_555 C DC 11 N4 ? ? B DG 2 C DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? B DG 3 N1 ? ? ? 1_555 C DC 10 N3 ? ? B DG 3 C DC 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? B DG 3 N2 ? ? ? 1_555 C DC 10 O2 ? ? B DG 3 C DC 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? B DG 3 O6 ? ? ? 1_555 C DC 10 N4 ? ? B DG 3 C DC 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? B DA 4 N1 ? ? ? 1_555 C DT 9 N3 ? ? B DA 4 C DT 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? B DA 4 N6 ? ? ? 1_555 C DT 9 O4 ? ? B DA 4 C DT 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? B DC 5 N3 ? ? ? 1_555 C DG 8 N1 ? ? B DC 5 C DG 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? B DC 5 N4 ? ? ? 1_555 C DG 8 O6 ? ? B DC 5 C DG 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? B DC 5 O2 ? ? ? 1_555 C DG 8 N2 ? ? B DC 5 C DG 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? B DT 6 N3 ? ? ? 1_555 C DA 7 N1 ? ? B DT 6 C DA 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? B DT 6 O4 ? ? ? 1_555 C DA 7 N6 ? ? B DT 6 C DA 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? B DG 7 N2 ? ? ? 1_555 C DT 6 O4 ? ? B DG 7 C DT 6 1_555 ? ? ? ? ? ? 'DG-DT MISPAIR' ? ? ? hydrog18 hydrog ? ? B DA 8 N1 ? ? ? 1_555 C DT 5 N3 ? ? B DA 8 C DT 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? B DA 8 N6 ? ? ? 1_555 C DT 5 O4 ? ? B DA 8 C DT 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? B DC 9 N3 ? ? ? 1_555 C DG 4 N1 ? ? B DC 9 C DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? B DC 9 N4 ? ? ? 1_555 C DG 4 O6 ? ? B DC 9 C DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? B DC 9 O2 ? ? ? 1_555 C DG 4 N2 ? ? B DC 9 C DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? B DG 10 N1 ? ? ? 1_555 C DC 3 N3 ? ? B DG 10 C DC 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? B DG 10 N2 ? ? ? 1_555 C DC 3 O2 ? ? B DG 10 C DC 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? B DG 10 O6 ? ? ? 1_555 C DC 3 N4 ? ? B DG 10 C DC 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? B DG 11 N1 ? ? ? 1_555 C DC 2 N3 ? ? B DG 11 C DC 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? B DG 11 N2 ? ? ? 1_555 C DC 2 O2 ? ? B DG 11 C DC 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? B DG 11 O6 ? ? ? 1_555 C DC 2 N4 ? ? B DG 11 C DC 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? B DG 12 N1 ? ? ? 1_555 C DC 1 N3 ? ? B DG 12 C DC 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? B DG 12 N2 ? ? ? 1_555 C DC 1 O2 ? ? B DG 12 C DC 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? B DG 12 O6 ? ? ? 1_555 C DC 1 N4 ? ? B DG 12 C DC 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # _database_PDB_matrix.entry_id 3JXY _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3JXY _atom_sites.fract_transf_matrix[1][1] 0.026178 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.010897 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.010684 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.022511 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 PRO 1 0 0 PRO PRO A . n A 1 2 MET 2 1 1 MET MET A . n A 1 3 HIS 3 2 2 HIS HIS A . n A 1 4 PRO 4 3 3 PRO PRO A . n A 1 5 PHE 5 4 4 PHE PHE A . n A 1 6 VAL 6 5 5 VAL VAL A . n A 1 7 LYS 7 6 6 LYS LYS A . n A 1 8 ALA 8 7 7 ALA ALA A . n A 1 9 LEU 9 8 8 LEU LEU A . n A 1 10 GLN 10 9 9 GLN GLN A . n A 1 11 GLU 11 10 10 GLU GLU A . n A 1 12 HIS 12 11 11 HIS HIS A . n A 1 13 PHE 13 12 12 PHE PHE A . n A 1 14 THR 14 13 13 THR THR A . n A 1 15 ALA 15 14 14 ALA ALA A . n A 1 16 HIS 16 15 15 HIS HIS A . n A 1 17 GLN 17 16 16 GLN GLN A . n A 1 18 ASN 18 17 17 ASN ASN A . n A 1 19 PRO 19 18 18 PRO PRO A . n A 1 20 GLU 20 19 19 GLU GLU A . n A 1 21 LYS 21 20 20 LYS LYS A . n A 1 22 ALA 22 21 21 ALA ALA A . n A 1 23 GLU 23 22 22 GLU GLU A . n A 1 24 PRO 24 23 23 PRO PRO A . n A 1 25 MET 25 24 24 MET MET A . n A 1 26 ALA 26 25 25 ALA ALA A . n A 1 27 ARG 27 26 26 ARG ARG A . n A 1 28 TYR 28 27 27 TYR TYR A . n A 1 29 MET 29 28 28 MET MET A . n A 1 30 LYS 30 29 29 LYS LYS A . n A 1 31 ASN 31 30 30 ASN ASN A . n A 1 32 HIS 32 31 31 HIS HIS A . n A 1 33 PHE 33 32 32 PHE PHE A . n A 1 34 LEU 34 33 33 LEU LEU A . n A 1 35 PHE 35 34 34 PHE PHE A . n A 1 36 LEU 36 35 35 LEU LEU A . n A 1 37 GLY 37 36 36 GLY GLY A . n A 1 38 ILE 38 37 37 ILE ILE A . n A 1 39 GLN 39 38 38 GLN GLN A . n A 1 40 THR 40 39 39 THR THR A . n A 1 41 PRO 41 40 40 PRO PRO A . n A 1 42 GLU 42 41 41 GLU GLU A . n A 1 43 ARG 43 42 42 ARG ARG A . n A 1 44 ARG 44 43 43 ARG ARG A . n A 1 45 GLN 45 44 44 GLN GLN A . n A 1 46 LEU 46 45 45 LEU LEU A . n A 1 47 LEU 47 46 46 LEU LEU A . n A 1 48 LYS 48 47 47 LYS LYS A . n A 1 49 ASP 49 48 48 ASP ASP A . n A 1 50 ILE 50 49 49 ILE ILE A . n A 1 51 ILE 51 50 50 ILE ILE A . n A 1 52 GLN 52 51 51 GLN GLN A . n A 1 53 ILE 53 52 52 ILE ILE A . n A 1 54 HIS 54 53 53 HIS HIS A . n A 1 55 THR 55 54 54 THR THR A . n A 1 56 LEU 56 55 55 LEU LEU A . n A 1 57 PRO 57 56 56 PRO PRO A . n A 1 58 ASP 58 57 57 ASP ASP A . n A 1 59 GLN 59 58 58 GLN GLN A . n A 1 60 LYS 60 59 59 LYS LYS A . n A 1 61 ASP 61 60 60 ASP ASP A . n A 1 62 PHE 62 61 61 PHE PHE A . n A 1 63 GLN 63 62 62 GLN GLN A . n A 1 64 ILE 64 63 63 ILE ILE A . n A 1 65 ILE 65 64 64 ILE ILE A . n A 1 66 ILE 66 65 65 ILE ILE A . n A 1 67 ARG 67 66 66 ARG ARG A . n A 1 68 GLU 68 67 67 GLU GLU A . n A 1 69 LEU 69 68 68 LEU LEU A . n A 1 70 TRP 70 69 69 TRP TRP A . n A 1 71 ASP 71 70 70 ASP ASP A . n A 1 72 LEU 72 71 71 LEU LEU A . n A 1 73 PRO 73 72 72 PRO PRO A . n A 1 74 GLU 74 73 73 GLU GLU A . n A 1 75 ARG 75 74 74 ARG ARG A . n A 1 76 GLU 76 75 75 GLU GLU A . n A 1 77 PHE 77 76 76 PHE PHE A . n A 1 78 GLN 78 77 77 GLN GLN A . n A 1 79 ALA 79 78 78 ALA ALA A . n A 1 80 ALA 80 79 79 ALA ALA A . n A 1 81 ALA 81 80 80 ALA ALA A . n A 1 82 LEU 82 81 81 LEU LEU A . n A 1 83 ASP 83 82 82 ASP ASP A . n A 1 84 ILE 84 83 83 ILE ILE A . n A 1 85 MET 85 84 84 MET MET A . n A 1 86 GLN 86 85 85 GLN GLN A . n A 1 87 LYS 87 86 86 LYS LYS A . n A 1 88 TYR 88 87 87 TYR TYR A . n A 1 89 LYS 89 88 88 LYS LYS A . n A 1 90 LYS 90 89 89 LYS LYS A . n A 1 91 HIS 91 90 90 HIS HIS A . n A 1 92 ILE 92 91 91 ILE ILE A . n A 1 93 ASN 93 92 92 ASN ASN A . n A 1 94 GLU 94 93 93 GLU GLU A . n A 1 95 THR 95 94 94 THR THR A . n A 1 96 HIS 96 95 95 HIS HIS A . n A 1 97 ILE 97 96 96 ILE ILE A . n A 1 98 PRO 98 97 97 PRO PRO A . n A 1 99 PHE 99 98 98 PHE PHE A . n A 1 100 LEU 100 99 99 LEU LEU A . n A 1 101 GLU 101 100 100 GLU GLU A . n A 1 102 GLU 102 101 101 GLU GLU A . n A 1 103 LEU 103 102 102 LEU LEU A . n A 1 104 ILE 104 103 103 ILE ILE A . n A 1 105 VAL 105 104 104 VAL VAL A . n A 1 106 THR 106 105 105 THR THR A . n A 1 107 LYS 107 106 106 LYS LYS A . n A 1 108 SER 108 107 107 SER SER A . n A 1 109 TRP 109 108 108 TRP TRP A . n A 1 110 TRP 110 109 109 TRP TRP A . n A 1 111 ASP 111 110 110 ASP ASP A . n A 1 112 SER 112 111 111 SER SER A . n A 1 113 VAL 113 112 112 VAL VAL A . n A 1 114 ASP 114 113 113 ASP ASP A . n A 1 115 SER 115 114 114 SER SER A . n A 1 116 ILE 116 115 115 ILE ILE A . n A 1 117 VAL 117 116 116 VAL VAL A . n A 1 118 PRO 118 117 117 PRO PRO A . n A 1 119 THR 119 118 118 THR THR A . n A 1 120 PHE 120 119 119 PHE PHE A . n A 1 121 LEU 121 120 120 LEU LEU A . n A 1 122 GLY 122 121 121 GLY GLY A . n A 1 123 ASP 123 122 122 ASP ASP A . n A 1 124 ILE 124 123 123 ILE ILE A . n A 1 125 PHE 125 124 124 PHE PHE A . n A 1 126 LEU 126 125 125 LEU LEU A . n A 1 127 LYS 127 126 126 LYS LYS A . n A 1 128 HIS 128 127 127 HIS HIS A . n A 1 129 PRO 129 128 128 PRO PRO A . n A 1 130 GLU 130 129 129 GLU GLU A . n A 1 131 LEU 131 130 130 LEU LEU A . n A 1 132 ILE 132 131 131 ILE ILE A . n A 1 133 SER 133 132 132 SER SER A . n A 1 134 ALA 134 133 133 ALA ALA A . n A 1 135 TYR 135 134 134 TYR TYR A . n A 1 136 ILE 136 135 135 ILE ILE A . n A 1 137 PRO 137 136 136 PRO PRO A . n A 1 138 LYS 138 137 137 LYS LYS A . n A 1 139 TRP 139 138 138 TRP TRP A . n A 1 140 ILE 140 139 139 ILE ILE A . n A 1 141 ALA 141 140 140 ALA ALA A . n A 1 142 SER 142 141 141 SER SER A . n A 1 143 ASP 143 142 142 ASP ASP A . n A 1 144 ASN 144 143 143 ASN ASN A . n A 1 145 ILE 145 144 144 ILE ILE A . n A 1 146 TRP 146 145 145 TRP TRP A . n A 1 147 LEU 147 146 146 LEU LEU A . n A 1 148 GLN 148 147 147 GLN GLN A . n A 1 149 ARG 149 148 148 ARG ARG A . n A 1 150 ALA 150 149 149 ALA ALA A . n A 1 151 ALA 151 150 150 ALA ALA A . n A 1 152 ILE 152 151 151 ILE ILE A . n A 1 153 LEU 153 152 152 LEU LEU A . n A 1 154 PHE 154 153 153 PHE PHE A . n A 1 155 GLN 155 154 154 GLN GLN A . n A 1 156 LEU 156 155 155 LEU LEU A . n A 1 157 LYS 157 156 156 LYS LYS A . n A 1 158 TYR 158 157 157 TYR TYR A . n A 1 159 LYS 159 158 158 LYS LYS A . n A 1 160 GLN 160 159 159 GLN GLN A . n A 1 161 LYS 161 160 160 LYS LYS A . n A 1 162 MET 162 161 161 MET MET A . n A 1 163 ASP 163 162 162 ASP ASP A . n A 1 164 GLU 164 163 163 GLU GLU A . n A 1 165 GLU 165 164 164 GLU GLU A . n A 1 166 LEU 166 165 165 LEU LEU A . n A 1 167 LEU 167 166 166 LEU LEU A . n A 1 168 PHE 168 167 167 PHE PHE A . n A 1 169 TRP 169 168 168 TRP TRP A . n A 1 170 ILE 170 169 169 ILE ILE A . n A 1 171 ILE 171 170 170 ILE ILE A . n A 1 172 GLY 172 171 171 GLY GLY A . n A 1 173 GLN 173 172 172 GLN GLN A . n A 1 174 LEU 174 173 173 LEU LEU A . n A 1 175 HIS 175 174 174 HIS HIS A . n A 1 176 SER 176 175 175 SER SER A . n A 1 177 SER 177 176 176 SER SER A . n A 1 178 LYS 178 177 177 LYS LYS A . n A 1 179 GLU 179 178 178 GLU GLU A . n A 1 180 PHE 180 179 179 PHE PHE A . n A 1 181 PHE 181 180 180 PHE PHE A . n A 1 182 ILE 182 181 181 ILE ILE A . n A 1 183 GLN 183 182 182 GLN GLN A . n A 1 184 LYS 184 183 183 LYS LYS A . n A 1 185 ALA 185 184 184 ALA ALA A . n A 1 186 ILE 186 185 185 ILE ILE A . n A 1 187 GLY 187 186 186 GLY GLY A . n A 1 188 TRP 188 187 187 TRP TRP A . n A 1 189 VAL 189 188 188 VAL VAL A . n A 1 190 LEU 190 189 189 LEU LEU A . n A 1 191 ARG 191 190 190 ARG ARG A . n A 1 192 GLU 192 191 191 GLU GLU A . n A 1 193 TYR 193 192 192 TYR TYR A . n A 1 194 ALA 194 193 193 ALA ALA A . n A 1 195 LYS 195 194 194 LYS LYS A . n A 1 196 THR 196 195 195 THR THR A . n A 1 197 ASN 197 196 196 ASN ASN A . n A 1 198 PRO 198 197 197 PRO PRO A . n A 1 199 ASP 199 198 198 ASP ASP A . n A 1 200 VAL 200 199 199 VAL VAL A . n A 1 201 VAL 201 200 200 VAL VAL A . n A 1 202 TRP 202 201 201 TRP TRP A . n A 1 203 GLU 203 202 202 GLU GLU A . n A 1 204 TYR 204 203 203 TYR TYR A . n A 1 205 VAL 205 204 204 VAL VAL A . n A 1 206 GLN 206 205 205 GLN GLN A . n A 1 207 ASN 207 206 206 ASN ASN A . n A 1 208 ASN 208 207 207 ASN ASN A . n A 1 209 GLU 209 208 208 GLU GLU A . n A 1 210 LEU 210 209 209 LEU LEU A . n A 1 211 ALA 211 210 210 ALA ALA A . n A 1 212 PRO 212 211 211 PRO PRO A . n A 1 213 LEU 213 212 212 LEU LEU A . n A 1 214 SER 214 213 213 SER SER A . n A 1 215 LYS 215 214 214 LYS LYS A . n A 1 216 ARG 216 215 215 ARG ARG A . n A 1 217 GLU 217 216 216 GLU GLU A . n A 1 218 ALA 218 217 217 ALA ALA A . n A 1 219 ILE 219 218 218 ILE ILE A . n A 1 220 LYS 220 219 219 LYS LYS A . n A 1 221 HIS 221 220 220 HIS HIS A . n A 1 222 ILE 222 221 221 ILE ILE A . n A 1 223 LYS 223 222 222 LYS LYS A . n A 1 224 GLN 224 223 223 GLN GLN A . n A 1 225 ASN 225 224 224 ASN ASN A . n A 1 226 TYR 226 225 225 TYR TYR A . n A 1 227 GLY 227 226 226 GLY GLY A . n A 1 228 ILE 228 227 227 ILE ILE A . n A 1 229 ASN 229 228 228 ASN ASN A . n A 1 230 ASN 230 229 229 ASN ASN A . n A 1 231 GLU 231 230 230 GLU GLU A . n A 1 232 LYS 232 231 ? ? ? A . n B 2 1 DC 1 1 1 DC DC B . n B 2 2 DG 2 2 2 DG DG B . n B 2 3 DG 3 3 3 DG DG B . n B 2 4 DA 4 4 4 DA DA B . n B 2 5 DC 5 5 5 DC DC B . n B 2 6 DT 6 6 6 DT DT B . n B 2 7 DG 7 7 7 DG DG B . n B 2 8 DA 8 8 8 DA DA B . n B 2 9 DC 9 9 9 DC DC B . n B 2 10 DG 10 10 10 DG DG B . n B 2 11 DG 11 11 11 DG DG B . n B 2 12 DG 12 12 12 DG DG B . n C 3 1 DC 1 1 1 DC DC C . n C 3 2 DC 2 2 2 DC DC C . n C 3 3 DC 3 3 3 DC DC C . n C 3 4 DG 4 4 4 DG DG C . n C 3 5 DT 5 5 5 DT DT C . n C 3 6 DT 6 6 6 DT DT C . n C 3 7 DA 7 7 7 DA DA C . n C 3 8 DG 8 8 8 DG DG C . n C 3 9 DT 9 9 9 DT DT C . n C 3 10 DC 10 10 10 DC DC C . n C 3 11 DC 11 11 11 DC DC C . n C 3 12 DG 12 12 12 DG DG C . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 HOH 1 232 232 HOH HOH A . D 4 HOH 2 233 233 HOH HOH A . D 4 HOH 3 234 234 HOH HOH A . D 4 HOH 4 235 235 HOH HOH A . D 4 HOH 5 236 236 HOH HOH A . D 4 HOH 6 237 237 HOH HOH A . D 4 HOH 7 238 238 HOH HOH A . D 4 HOH 8 239 239 HOH HOH A . D 4 HOH 9 240 240 HOH HOH A . D 4 HOH 10 241 241 HOH HOH A . D 4 HOH 11 242 242 HOH HOH A . D 4 HOH 12 243 243 HOH HOH A . D 4 HOH 13 244 244 HOH HOH A . D 4 HOH 14 245 245 HOH HOH A . D 4 HOH 15 246 246 HOH HOH A . D 4 HOH 16 247 247 HOH HOH A . D 4 HOH 17 249 249 HOH HOH A . D 4 HOH 18 250 250 HOH HOH A . D 4 HOH 19 251 251 HOH HOH A . D 4 HOH 20 252 252 HOH HOH A . D 4 HOH 21 253 253 HOH HOH A . D 4 HOH 22 254 254 HOH HOH A . D 4 HOH 23 255 255 HOH HOH A . D 4 HOH 24 256 256 HOH HOH A . D 4 HOH 25 257 257 HOH HOH A . D 4 HOH 26 258 258 HOH HOH A . D 4 HOH 27 259 259 HOH HOH A . D 4 HOH 28 260 260 HOH HOH A . D 4 HOH 29 261 261 HOH HOH A . D 4 HOH 30 262 262 HOH HOH A . D 4 HOH 31 263 263 HOH HOH A . D 4 HOH 32 264 264 HOH HOH A . D 4 HOH 33 265 265 HOH HOH A . D 4 HOH 34 266 266 HOH HOH A . D 4 HOH 35 267 267 HOH HOH A . D 4 HOH 36 268 268 HOH HOH A . D 4 HOH 37 269 269 HOH HOH A . D 4 HOH 38 270 270 HOH HOH A . D 4 HOH 39 271 271 HOH HOH A . D 4 HOH 40 272 272 HOH HOH A . D 4 HOH 41 273 273 HOH HOH A . D 4 HOH 42 274 274 HOH HOH A . D 4 HOH 43 275 275 HOH HOH A . D 4 HOH 44 276 276 HOH HOH A . D 4 HOH 45 277 277 HOH HOH A . D 4 HOH 46 278 278 HOH HOH A . D 4 HOH 47 279 279 HOH HOH A . D 4 HOH 48 280 280 HOH HOH A . D 4 HOH 49 281 281 HOH HOH A . D 4 HOH 50 282 282 HOH HOH A . D 4 HOH 51 283 283 HOH HOH A . D 4 HOH 52 284 284 HOH HOH A . D 4 HOH 53 285 285 HOH HOH A . D 4 HOH 54 286 286 HOH HOH A . D 4 HOH 55 287 287 HOH HOH A . D 4 HOH 56 288 288 HOH HOH A . D 4 HOH 57 289 289 HOH HOH A . D 4 HOH 58 290 290 HOH HOH A . D 4 HOH 59 291 291 HOH HOH A . D 4 HOH 60 292 292 HOH HOH A . D 4 HOH 61 293 293 HOH HOH A . D 4 HOH 62 294 294 HOH HOH A . D 4 HOH 63 295 295 HOH HOH A . D 4 HOH 64 296 296 HOH HOH A . D 4 HOH 65 297 297 HOH HOH A . D 4 HOH 66 298 298 HOH HOH A . D 4 HOH 67 299 299 HOH HOH A . D 4 HOH 68 300 300 HOH HOH A . D 4 HOH 69 301 301 HOH HOH A . D 4 HOH 70 302 302 HOH HOH A . D 4 HOH 71 303 303 HOH HOH A . D 4 HOH 72 304 304 HOH HOH A . D 4 HOH 73 305 305 HOH HOH A . D 4 HOH 74 306 306 HOH HOH A . D 4 HOH 75 307 307 HOH HOH A . D 4 HOH 76 308 308 HOH HOH A . D 4 HOH 77 309 309 HOH HOH A . D 4 HOH 78 310 310 HOH HOH A . D 4 HOH 79 311 311 HOH HOH A . D 4 HOH 80 312 312 HOH HOH A . D 4 HOH 81 313 313 HOH HOH A . D 4 HOH 82 314 314 HOH HOH A . D 4 HOH 83 315 315 HOH HOH A . D 4 HOH 84 316 316 HOH HOH A . D 4 HOH 85 317 317 HOH HOH A . D 4 HOH 86 318 318 HOH HOH A . D 4 HOH 87 319 319 HOH HOH A . D 4 HOH 88 320 320 HOH HOH A . D 4 HOH 89 321 321 HOH HOH A . D 4 HOH 90 322 322 HOH HOH A . D 4 HOH 91 323 323 HOH HOH A . D 4 HOH 92 324 324 HOH HOH A . D 4 HOH 93 325 325 HOH HOH A . D 4 HOH 94 326 326 HOH HOH A . D 4 HOH 95 327 327 HOH HOH A . D 4 HOH 96 328 328 HOH HOH A . D 4 HOH 97 329 329 HOH HOH A . D 4 HOH 98 330 330 HOH HOH A . D 4 HOH 99 331 331 HOH HOH A . D 4 HOH 100 332 332 HOH HOH A . D 4 HOH 101 333 333 HOH HOH A . D 4 HOH 102 334 334 HOH HOH A . D 4 HOH 103 335 335 HOH HOH A . D 4 HOH 104 336 336 HOH HOH A . D 4 HOH 105 337 337 HOH HOH A . D 4 HOH 106 338 338 HOH HOH A . D 4 HOH 107 339 339 HOH HOH A . D 4 HOH 108 340 340 HOH HOH A . D 4 HOH 109 341 341 HOH HOH A . D 4 HOH 110 343 343 HOH HOH A . D 4 HOH 111 344 344 HOH HOH A . D 4 HOH 112 345 345 HOH HOH A . D 4 HOH 113 346 346 HOH HOH A . D 4 HOH 114 347 347 HOH HOH A . D 4 HOH 115 348 348 HOH HOH A . D 4 HOH 116 349 349 HOH HOH A . D 4 HOH 117 350 350 HOH HOH A . D 4 HOH 118 351 351 HOH HOH A . D 4 HOH 119 352 352 HOH HOH A . D 4 HOH 120 353 353 HOH HOH A . D 4 HOH 121 354 354 HOH HOH A . D 4 HOH 122 355 355 HOH HOH A . D 4 HOH 123 356 356 HOH HOH A . D 4 HOH 124 357 357 HOH HOH A . D 4 HOH 125 358 358 HOH HOH A . D 4 HOH 126 359 359 HOH HOH A . D 4 HOH 127 360 360 HOH HOH A . D 4 HOH 128 361 361 HOH HOH A . D 4 HOH 129 362 362 HOH HOH A . D 4 HOH 130 363 363 HOH HOH A . D 4 HOH 131 364 364 HOH HOH A . D 4 HOH 132 365 365 HOH HOH A . D 4 HOH 133 366 366 HOH HOH A . D 4 HOH 134 367 367 HOH HOH A . D 4 HOH 135 368 368 HOH HOH A . D 4 HOH 136 369 369 HOH HOH A . D 4 HOH 137 370 370 HOH HOH A . D 4 HOH 138 371 371 HOH HOH A . D 4 HOH 139 372 372 HOH HOH A . D 4 HOH 140 373 373 HOH HOH A . D 4 HOH 141 374 374 HOH HOH A . D 4 HOH 142 375 375 HOH HOH A . D 4 HOH 143 376 376 HOH HOH A . D 4 HOH 144 377 377 HOH HOH A . D 4 HOH 145 378 378 HOH HOH A . D 4 HOH 146 379 379 HOH HOH A . D 4 HOH 147 380 380 HOH HOH A . D 4 HOH 148 381 381 HOH HOH A . D 4 HOH 149 382 382 HOH HOH A . D 4 HOH 150 383 383 HOH HOH A . D 4 HOH 151 384 384 HOH HOH A . D 4 HOH 152 385 385 HOH HOH A . D 4 HOH 153 386 386 HOH HOH A . D 4 HOH 154 387 387 HOH HOH A . D 4 HOH 155 388 388 HOH HOH A . D 4 HOH 156 389 389 HOH HOH A . D 4 HOH 157 390 390 HOH HOH A . D 4 HOH 158 391 391 HOH HOH A . D 4 HOH 159 392 392 HOH HOH A . D 4 HOH 160 393 393 HOH HOH A . D 4 HOH 161 394 394 HOH HOH A . D 4 HOH 162 395 395 HOH HOH A . D 4 HOH 163 396 396 HOH HOH A . D 4 HOH 164 397 397 HOH HOH A . D 4 HOH 165 398 398 HOH HOH A . D 4 HOH 166 399 399 HOH HOH A . D 4 HOH 167 400 400 HOH HOH A . D 4 HOH 168 401 401 HOH HOH A . D 4 HOH 169 402 402 HOH HOH A . D 4 HOH 170 403 403 HOH HOH A . D 4 HOH 171 404 404 HOH HOH A . D 4 HOH 172 405 405 HOH HOH A . D 4 HOH 173 406 406 HOH HOH A . D 4 HOH 174 407 407 HOH HOH A . D 4 HOH 175 408 408 HOH HOH A . D 4 HOH 176 409 409 HOH HOH A . D 4 HOH 177 411 411 HOH HOH A . D 4 HOH 178 412 412 HOH HOH A . D 4 HOH 179 413 413 HOH HOH A . D 4 HOH 180 414 414 HOH HOH A . D 4 HOH 181 415 415 HOH HOH A . D 4 HOH 182 416 416 HOH HOH A . D 4 HOH 183 417 417 HOH HOH A . D 4 HOH 184 418 418 HOH HOH A . D 4 HOH 185 420 420 HOH HOH A . D 4 HOH 186 421 421 HOH HOH A . D 4 HOH 187 422 422 HOH HOH A . D 4 HOH 188 423 423 HOH HOH A . D 4 HOH 189 424 424 HOH HOH A . D 4 HOH 190 425 425 HOH HOH A . D 4 HOH 191 426 426 HOH HOH A . D 4 HOH 192 427 427 HOH HOH A . D 4 HOH 193 428 428 HOH HOH A . D 4 HOH 194 429 429 HOH HOH A . D 4 HOH 195 430 430 HOH HOH A . D 4 HOH 196 431 431 HOH HOH A . D 4 HOH 197 432 432 HOH HOH A . D 4 HOH 198 433 433 HOH HOH A . D 4 HOH 199 434 434 HOH HOH A . D 4 HOH 200 435 435 HOH HOH A . D 4 HOH 201 436 436 HOH HOH A . D 4 HOH 202 437 437 HOH HOH A . D 4 HOH 203 438 438 HOH HOH A . D 4 HOH 204 439 439 HOH HOH A . D 4 HOH 205 440 440 HOH HOH A . D 4 HOH 206 441 441 HOH HOH A . D 4 HOH 207 442 442 HOH HOH A . D 4 HOH 208 443 443 HOH HOH A . D 4 HOH 209 444 444 HOH HOH A . D 4 HOH 210 445 445 HOH HOH A . D 4 HOH 211 446 446 HOH HOH A . D 4 HOH 212 447 447 HOH HOH A . D 4 HOH 213 448 448 HOH HOH A . D 4 HOH 214 449 449 HOH HOH A . D 4 HOH 215 450 450 HOH HOH A . D 4 HOH 216 451 451 HOH HOH A . D 4 HOH 217 452 452 HOH HOH A . D 4 HOH 218 453 453 HOH HOH A . D 4 HOH 219 454 454 HOH HOH A . D 4 HOH 220 455 455 HOH HOH A . D 4 HOH 221 456 456 HOH HOH A . D 4 HOH 222 457 457 HOH HOH A . D 4 HOH 223 458 458 HOH HOH A . D 4 HOH 224 459 459 HOH HOH A . D 4 HOH 225 460 460 HOH HOH A . D 4 HOH 226 461 461 HOH HOH A . D 4 HOH 227 462 462 HOH HOH A . D 4 HOH 228 463 463 HOH HOH A . D 4 HOH 229 464 464 HOH HOH A . D 4 HOH 230 465 465 HOH HOH A . D 4 HOH 231 466 466 HOH HOH A . D 4 HOH 232 467 467 HOH HOH A . D 4 HOH 233 468 468 HOH HOH A . D 4 HOH 234 469 469 HOH HOH A . D 4 HOH 235 470 470 HOH HOH A . D 4 HOH 236 471 471 HOH HOH A . D 4 HOH 237 472 472 HOH HOH A . D 4 HOH 238 473 473 HOH HOH A . D 4 HOH 239 474 474 HOH HOH A . D 4 HOH 240 475 475 HOH HOH A . D 4 HOH 241 476 476 HOH HOH A . D 4 HOH 242 477 477 HOH HOH A . D 4 HOH 243 478 478 HOH HOH A . D 4 HOH 244 479 479 HOH HOH A . D 4 HOH 245 480 480 HOH HOH A . D 4 HOH 246 481 481 HOH HOH A . D 4 HOH 247 482 482 HOH HOH A . D 4 HOH 248 483 483 HOH HOH A . D 4 HOH 249 484 484 HOH HOH A . D 4 HOH 250 485 485 HOH HOH A . D 4 HOH 251 486 486 HOH HOH A . D 4 HOH 252 487 487 HOH HOH A . D 4 HOH 253 488 488 HOH HOH A . D 4 HOH 254 489 489 HOH HOH A . D 4 HOH 255 490 490 HOH HOH A . D 4 HOH 256 491 491 HOH HOH A . D 4 HOH 257 492 492 HOH HOH A . D 4 HOH 258 493 493 HOH HOH A . D 4 HOH 259 494 494 HOH HOH A . D 4 HOH 260 495 495 HOH HOH A . D 4 HOH 261 496 496 HOH HOH A . D 4 HOH 262 497 497 HOH HOH A . D 4 HOH 263 498 498 HOH HOH A . D 4 HOH 264 499 499 HOH HOH A . D 4 HOH 265 500 500 HOH HOH A . D 4 HOH 266 501 501 HOH HOH A . D 4 HOH 267 502 502 HOH HOH A . D 4 HOH 268 503 503 HOH HOH A . D 4 HOH 269 504 504 HOH HOH A . D 4 HOH 270 505 505 HOH HOH A . D 4 HOH 271 506 506 HOH HOH A . D 4 HOH 272 507 507 HOH HOH A . D 4 HOH 273 508 508 HOH HOH A . D 4 HOH 274 509 509 HOH HOH A . D 4 HOH 275 510 510 HOH HOH A . D 4 HOH 276 511 511 HOH HOH A . D 4 HOH 277 512 512 HOH HOH A . D 4 HOH 278 513 513 HOH HOH A . D 4 HOH 279 514 514 HOH HOH A . D 4 HOH 280 515 515 HOH HOH A . D 4 HOH 281 516 516 HOH HOH A . D 4 HOH 282 517 517 HOH HOH A . D 4 HOH 283 518 518 HOH HOH A . D 4 HOH 284 519 519 HOH HOH A . D 4 HOH 285 520 520 HOH HOH A . D 4 HOH 286 521 521 HOH HOH A . D 4 HOH 287 522 522 HOH HOH A . D 4 HOH 288 523 523 HOH HOH A . D 4 HOH 289 524 524 HOH HOH A . D 4 HOH 290 525 525 HOH HOH A . D 4 HOH 291 526 526 HOH HOH A . D 4 HOH 292 527 527 HOH HOH A . D 4 HOH 293 528 528 HOH HOH A . D 4 HOH 294 529 529 HOH HOH A . D 4 HOH 295 530 530 HOH HOH A . D 4 HOH 296 531 531 HOH HOH A . D 4 HOH 297 532 532 HOH HOH A . D 4 HOH 298 533 533 HOH HOH A . D 4 HOH 299 534 534 HOH HOH A . D 4 HOH 300 535 535 HOH HOH A . D 4 HOH 301 536 536 HOH HOH A . D 4 HOH 302 537 537 HOH HOH A . D 4 HOH 303 538 538 HOH HOH A . D 4 HOH 304 539 539 HOH HOH A . D 4 HOH 305 540 540 HOH HOH A . D 4 HOH 306 541 541 HOH HOH A . D 4 HOH 307 542 542 HOH HOH A . D 4 HOH 308 543 543 HOH HOH A . D 4 HOH 309 544 544 HOH HOH A . D 4 HOH 310 545 545 HOH HOH A . D 4 HOH 311 546 546 HOH HOH A . D 4 HOH 312 547 547 HOH HOH A . D 4 HOH 313 548 548 HOH HOH A . D 4 HOH 314 549 549 HOH HOH A . D 4 HOH 315 550 550 HOH HOH A . D 4 HOH 316 551 551 HOH HOH A . D 4 HOH 317 552 552 HOH HOH A . D 4 HOH 318 553 553 HOH HOH A . D 4 HOH 319 554 554 HOH HOH A . D 4 HOH 320 555 555 HOH HOH A . D 4 HOH 321 556 556 HOH HOH A . D 4 HOH 322 557 557 HOH HOH A . D 4 HOH 323 558 558 HOH HOH A . D 4 HOH 324 559 559 HOH HOH A . D 4 HOH 325 560 560 HOH HOH A . D 4 HOH 326 561 561 HOH HOH A . D 4 HOH 327 562 562 HOH HOH A . D 4 HOH 328 563 563 HOH HOH A . D 4 HOH 329 564 564 HOH HOH A . D 4 HOH 330 565 565 HOH HOH A . D 4 HOH 331 566 566 HOH HOH A . D 4 HOH 332 567 567 HOH HOH A . D 4 HOH 333 568 568 HOH HOH A . D 4 HOH 334 569 569 HOH HOH A . D 4 HOH 335 570 570 HOH HOH A . D 4 HOH 336 571 571 HOH HOH A . D 4 HOH 337 572 572 HOH HOH A . D 4 HOH 338 573 573 HOH HOH A . D 4 HOH 339 574 574 HOH HOH A . D 4 HOH 340 575 575 HOH HOH A . D 4 HOH 341 576 576 HOH HOH A . D 4 HOH 342 577 577 HOH HOH A . D 4 HOH 343 578 578 HOH HOH A . D 4 HOH 344 579 579 HOH HOH A . D 4 HOH 345 580 580 HOH HOH A . D 4 HOH 346 581 581 HOH HOH A . D 4 HOH 347 583 583 HOH HOH A . D 4 HOH 348 584 584 HOH HOH A . D 4 HOH 349 585 585 HOH HOH A . D 4 HOH 350 586 586 HOH HOH A . D 4 HOH 351 587 587 HOH HOH A . D 4 HOH 352 588 588 HOH HOH A . D 4 HOH 353 589 589 HOH HOH A . D 4 HOH 354 590 590 HOH HOH A . D 4 HOH 355 591 591 HOH HOH A . D 4 HOH 356 592 592 HOH HOH A . D 4 HOH 357 593 593 HOH HOH A . D 4 HOH 358 594 594 HOH HOH A . D 4 HOH 359 595 595 HOH HOH A . D 4 HOH 360 596 596 HOH HOH A . D 4 HOH 361 597 597 HOH HOH A . D 4 HOH 362 598 598 HOH HOH A . D 4 HOH 363 599 599 HOH HOH A . D 4 HOH 364 600 600 HOH HOH A . D 4 HOH 365 601 601 HOH HOH A . D 4 HOH 366 602 602 HOH HOH A . D 4 HOH 367 603 603 HOH HOH A . D 4 HOH 368 604 604 HOH HOH A . D 4 HOH 369 605 605 HOH HOH A . D 4 HOH 370 606 606 HOH HOH A . D 4 HOH 371 607 607 HOH HOH A . D 4 HOH 372 608 608 HOH HOH A . D 4 HOH 373 609 609 HOH HOH A . D 4 HOH 374 610 610 HOH HOH A . D 4 HOH 375 611 611 HOH HOH A . D 4 HOH 376 612 612 HOH HOH A . D 4 HOH 377 614 614 HOH HOH A . D 4 HOH 378 615 615 HOH HOH A . D 4 HOH 379 616 616 HOH HOH A . D 4 HOH 380 617 617 HOH HOH A . D 4 HOH 381 618 618 HOH HOH A . D 4 HOH 382 619 619 HOH HOH A . D 4 HOH 383 620 620 HOH HOH A . D 4 HOH 384 621 621 HOH HOH A . D 4 HOH 385 622 622 HOH HOH A . D 4 HOH 386 623 623 HOH HOH A . D 4 HOH 387 624 624 HOH HOH A . D 4 HOH 388 625 625 HOH HOH A . D 4 HOH 389 626 626 HOH HOH A . D 4 HOH 390 627 627 HOH HOH A . D 4 HOH 391 628 628 HOH HOH A . D 4 HOH 392 629 629 HOH HOH A . D 4 HOH 393 630 630 HOH HOH A . D 4 HOH 394 631 631 HOH HOH A . D 4 HOH 395 632 632 HOH HOH A . D 4 HOH 396 633 633 HOH HOH A . D 4 HOH 397 634 634 HOH HOH A . D 4 HOH 398 635 635 HOH HOH A . D 4 HOH 399 636 636 HOH HOH A . D 4 HOH 400 637 637 HOH HOH A . D 4 HOH 401 638 638 HOH HOH A . D 4 HOH 402 639 639 HOH HOH A . D 4 HOH 403 640 640 HOH HOH A . D 4 HOH 404 641 641 HOH HOH A . D 4 HOH 405 642 642 HOH HOH A . D 4 HOH 406 643 643 HOH HOH A . D 4 HOH 407 644 644 HOH HOH A . D 4 HOH 408 645 645 HOH HOH A . D 4 HOH 409 646 646 HOH HOH A . D 4 HOH 410 647 647 HOH HOH A . D 4 HOH 411 648 648 HOH HOH A . D 4 HOH 412 649 649 HOH HOH A . D 4 HOH 413 650 650 HOH HOH A . D 4 HOH 414 651 651 HOH HOH A . D 4 HOH 415 653 653 HOH HOH A . D 4 HOH 416 654 654 HOH HOH A . D 4 HOH 417 655 655 HOH HOH A . D 4 HOH 418 656 656 HOH HOH A . D 4 HOH 419 657 657 HOH HOH A . D 4 HOH 420 658 658 HOH HOH A . D 4 HOH 421 659 659 HOH HOH A . D 4 HOH 422 660 660 HOH HOH A . D 4 HOH 423 661 661 HOH HOH A . D 4 HOH 424 662 662 HOH HOH A . D 4 HOH 425 663 663 HOH HOH A . E 4 HOH 1 34 34 HOH HOH B . E 4 HOH 2 48 48 HOH HOH B . E 4 HOH 3 69 69 HOH HOH B . E 4 HOH 4 70 70 HOH HOH B . E 4 HOH 5 97 97 HOH HOH B . E 4 HOH 6 118 118 HOH HOH B . E 4 HOH 7 136 136 HOH HOH B . E 4 HOH 8 141 141 HOH HOH B . E 4 HOH 9 149 149 HOH HOH B . E 4 HOH 10 154 154 HOH HOH B . E 4 HOH 11 159 159 HOH HOH B . E 4 HOH 12 168 168 HOH HOH B . E 4 HOH 13 170 170 HOH HOH B . E 4 HOH 14 174 174 HOH HOH B . E 4 HOH 15 183 183 HOH HOH B . E 4 HOH 16 189 189 HOH HOH B . E 4 HOH 17 223 223 HOH HOH B . E 4 HOH 18 229 229 HOH HOH B . E 4 HOH 19 231 231 HOH HOH B . E 4 HOH 20 233 233 HOH HOH B . E 4 HOH 21 238 238 HOH HOH B . E 4 HOH 22 246 246 HOH HOH B . E 4 HOH 23 258 258 HOH HOH B . E 4 HOH 24 263 263 HOH HOH B . E 4 HOH 25 265 265 HOH HOH B . E 4 HOH 26 271 271 HOH HOH B . E 4 HOH 27 272 272 HOH HOH B . E 4 HOH 28 287 287 HOH HOH B . E 4 HOH 29 303 303 HOH HOH B . E 4 HOH 30 312 312 HOH HOH B . E 4 HOH 31 315 315 HOH HOH B . E 4 HOH 32 322 322 HOH HOH B . E 4 HOH 33 331 331 HOH HOH B . E 4 HOH 34 342 342 HOH HOH B . E 4 HOH 35 351 351 HOH HOH B . E 4 HOH 36 352 352 HOH HOH B . E 4 HOH 37 356 356 HOH HOH B . E 4 HOH 38 357 357 HOH HOH B . E 4 HOH 39 358 358 HOH HOH B . E 4 HOH 40 363 363 HOH HOH B . E 4 HOH 41 364 364 HOH HOH B . E 4 HOH 42 377 377 HOH HOH B . E 4 HOH 43 389 389 HOH HOH B . E 4 HOH 44 403 403 HOH HOH B . E 4 HOH 45 419 419 HOH HOH B . E 4 HOH 46 425 425 HOH HOH B . E 4 HOH 47 426 426 HOH HOH B . E 4 HOH 48 443 443 HOH HOH B . E 4 HOH 49 473 473 HOH HOH B . E 4 HOH 50 480 480 HOH HOH B . E 4 HOH 51 482 482 HOH HOH B . E 4 HOH 52 484 484 HOH HOH B . E 4 HOH 53 488 488 HOH HOH B . E 4 HOH 54 513 513 HOH HOH B . E 4 HOH 55 516 516 HOH HOH B . E 4 HOH 56 520 520 HOH HOH B . E 4 HOH 57 524 524 HOH HOH B . E 4 HOH 58 582 582 HOH HOH B . E 4 HOH 59 652 652 HOH HOH B . F 4 HOH 1 26 26 HOH HOH C . F 4 HOH 2 31 31 HOH HOH C . F 4 HOH 3 45 45 HOH HOH C . F 4 HOH 4 49 49 HOH HOH C . F 4 HOH 5 52 52 HOH HOH C . F 4 HOH 6 82 82 HOH HOH C . F 4 HOH 7 84 84 HOH HOH C . F 4 HOH 8 91 91 HOH HOH C . F 4 HOH 9 113 113 HOH HOH C . F 4 HOH 10 114 114 HOH HOH C . F 4 HOH 11 117 117 HOH HOH C . F 4 HOH 12 130 130 HOH HOH C . F 4 HOH 13 140 140 HOH HOH C . F 4 HOH 14 148 148 HOH HOH C . F 4 HOH 15 151 151 HOH HOH C . F 4 HOH 16 153 153 HOH HOH C . F 4 HOH 17 172 172 HOH HOH C . F 4 HOH 18 173 173 HOH HOH C . F 4 HOH 19 222 222 HOH HOH C . F 4 HOH 20 230 230 HOH HOH C . F 4 HOH 21 234 234 HOH HOH C . F 4 HOH 22 241 241 HOH HOH C . F 4 HOH 23 248 248 HOH HOH C . F 4 HOH 24 255 255 HOH HOH C . F 4 HOH 25 262 262 HOH HOH C . F 4 HOH 26 278 278 HOH HOH C . F 4 HOH 27 294 294 HOH HOH C . F 4 HOH 28 340 340 HOH HOH C . F 4 HOH 29 350 350 HOH HOH C . F 4 HOH 30 365 365 HOH HOH C . F 4 HOH 31 401 401 HOH HOH C . F 4 HOH 32 410 410 HOH HOH C . F 4 HOH 33 422 422 HOH HOH C . F 4 HOH 34 429 429 HOH HOH C . F 4 HOH 35 451 451 HOH HOH C . F 4 HOH 36 465 465 HOH HOH C . F 4 HOH 37 472 472 HOH HOH C . F 4 HOH 38 493 493 HOH HOH C . F 4 HOH 39 507 507 HOH HOH C . F 4 HOH 40 514 514 HOH HOH C . F 4 HOH 41 613 613 HOH HOH C . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 2660 ? 1 MORE -16 ? 1 'SSA (A^2)' 15120 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2010-09-22 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2023-09-06 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Source and taxonomy' 2 2 'Structure model' 'Version format compliance' 3 3 'Structure model' 'Data collection' 4 3 'Structure model' 'Database references' 5 3 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp_atom 2 3 'Structure model' chem_comp_bond 3 3 'Structure model' database_2 4 3 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal MAR345dtb 'data collection' . ? 1 PHASER phasing . ? 2 PHENIX refinement '(phenix.refine)' ? 3 HKL-2000 'data reduction' . ? 4 HKL-2000 'data scaling' . ? 5 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" B DG 2 ? ? "C1'" B DG 2 ? ? N9 B DG 2 ? ? 113.58 108.30 5.28 0.30 N 2 1 "C3'" B DG 11 ? ? "C2'" B DG 11 ? ? "C1'" B DG 11 ? ? 96.41 102.40 -5.99 0.80 N 3 1 "O4'" B DG 11 ? ? "C1'" B DG 11 ? ? N9 B DG 11 ? ? 112.83 108.30 4.53 0.30 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 THR A 54 ? ? 72.52 155.79 2 1 THR A 118 ? ? -96.71 -72.51 3 1 LYS A 158 ? ? 50.05 -122.41 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A GLU 22 ? CG ? A GLU 23 CG 2 1 Y 1 A GLU 22 ? CD ? A GLU 23 CD 3 1 Y 1 A GLU 22 ? OE1 ? A GLU 23 OE1 4 1 Y 1 A GLU 22 ? OE2 ? A GLU 23 OE2 5 1 Y 1 A GLU 230 ? CG ? A GLU 231 CG 6 1 Y 1 A GLU 230 ? CD ? A GLU 231 CD 7 1 Y 1 A GLU 230 ? OE1 ? A GLU 231 OE1 8 1 Y 1 A GLU 230 ? OE2 ? A GLU 231 OE2 # _pdbx_unobs_or_zero_occ_residues.id 1 _pdbx_unobs_or_zero_occ_residues.PDB_model_num 1 _pdbx_unobs_or_zero_occ_residues.polymer_flag Y _pdbx_unobs_or_zero_occ_residues.occupancy_flag 1 _pdbx_unobs_or_zero_occ_residues.auth_asym_id A _pdbx_unobs_or_zero_occ_residues.auth_comp_id LYS _pdbx_unobs_or_zero_occ_residues.auth_seq_id 231 _pdbx_unobs_or_zero_occ_residues.PDB_ins_code ? _pdbx_unobs_or_zero_occ_residues.label_asym_id A _pdbx_unobs_or_zero_occ_residues.label_comp_id LYS _pdbx_unobs_or_zero_occ_residues.label_seq_id 232 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 DA OP3 O N N 74 DA P P N N 75 DA OP1 O N N 76 DA OP2 O N N 77 DA "O5'" O N N 78 DA "C5'" C N N 79 DA "C4'" C N R 80 DA "O4'" O N N 81 DA "C3'" C N S 82 DA "O3'" O N N 83 DA "C2'" C N N 84 DA "C1'" C N R 85 DA N9 N Y N 86 DA C8 C Y N 87 DA N7 N Y N 88 DA C5 C Y N 89 DA C6 C Y N 90 DA N6 N N N 91 DA N1 N Y N 92 DA C2 C Y N 93 DA N3 N Y N 94 DA C4 C Y N 95 DA HOP3 H N N 96 DA HOP2 H N N 97 DA "H5'" H N N 98 DA "H5''" H N N 99 DA "H4'" H N N 100 DA "H3'" H N N 101 DA "HO3'" H N N 102 DA "H2'" H N N 103 DA "H2''" H N N 104 DA "H1'" H N N 105 DA H8 H N N 106 DA H61 H N N 107 DA H62 H N N 108 DA H2 H N N 109 DC OP3 O N N 110 DC P P N N 111 DC OP1 O N N 112 DC OP2 O N N 113 DC "O5'" O N N 114 DC "C5'" C N N 115 DC "C4'" C N R 116 DC "O4'" O N N 117 DC "C3'" C N S 118 DC "O3'" O N N 119 DC "C2'" C N N 120 DC "C1'" C N R 121 DC N1 N N N 122 DC C2 C N N 123 DC O2 O N N 124 DC N3 N N N 125 DC C4 C N N 126 DC N4 N N N 127 DC C5 C N N 128 DC C6 C N N 129 DC HOP3 H N N 130 DC HOP2 H N N 131 DC "H5'" H N N 132 DC "H5''" H N N 133 DC "H4'" H N N 134 DC "H3'" H N N 135 DC "HO3'" H N N 136 DC "H2'" H N N 137 DC "H2''" H N N 138 DC "H1'" H N N 139 DC H41 H N N 140 DC H42 H N N 141 DC H5 H N N 142 DC H6 H N N 143 DG OP3 O N N 144 DG P P N N 145 DG OP1 O N N 146 DG OP2 O N N 147 DG "O5'" O N N 148 DG "C5'" C N N 149 DG "C4'" C N R 150 DG "O4'" O N N 151 DG "C3'" C N S 152 DG "O3'" O N N 153 DG "C2'" C N N 154 DG "C1'" C N R 155 DG N9 N Y N 156 DG C8 C Y N 157 DG N7 N Y N 158 DG C5 C Y N 159 DG C6 C N N 160 DG O6 O N N 161 DG N1 N N N 162 DG C2 C N N 163 DG N2 N N N 164 DG N3 N N N 165 DG C4 C Y N 166 DG HOP3 H N N 167 DG HOP2 H N N 168 DG "H5'" H N N 169 DG "H5''" H N N 170 DG "H4'" H N N 171 DG "H3'" H N N 172 DG "HO3'" H N N 173 DG "H2'" H N N 174 DG "H2''" H N N 175 DG "H1'" H N N 176 DG H8 H N N 177 DG H1 H N N 178 DG H21 H N N 179 DG H22 H N N 180 DT OP3 O N N 181 DT P P N N 182 DT OP1 O N N 183 DT OP2 O N N 184 DT "O5'" O N N 185 DT "C5'" C N N 186 DT "C4'" C N R 187 DT "O4'" O N N 188 DT "C3'" C N S 189 DT "O3'" O N N 190 DT "C2'" C N N 191 DT "C1'" C N R 192 DT N1 N N N 193 DT C2 C N N 194 DT O2 O N N 195 DT N3 N N N 196 DT C4 C N N 197 DT O4 O N N 198 DT C5 C N N 199 DT C7 C N N 200 DT C6 C N N 201 DT HOP3 H N N 202 DT HOP2 H N N 203 DT "H5'" H N N 204 DT "H5''" H N N 205 DT "H4'" H N N 206 DT "H3'" H N N 207 DT "HO3'" H N N 208 DT "H2'" H N N 209 DT "H2''" H N N 210 DT "H1'" H N N 211 DT H3 H N N 212 DT H71 H N N 213 DT H72 H N N 214 DT H73 H N N 215 DT H6 H N N 216 GLN N N N N 217 GLN CA C N S 218 GLN C C N N 219 GLN O O N N 220 GLN CB C N N 221 GLN CG C N N 222 GLN CD C N N 223 GLN OE1 O N N 224 GLN NE2 N N N 225 GLN OXT O N N 226 GLN H H N N 227 GLN H2 H N N 228 GLN HA H N N 229 GLN HB2 H N N 230 GLN HB3 H N N 231 GLN HG2 H N N 232 GLN HG3 H N N 233 GLN HE21 H N N 234 GLN HE22 H N N 235 GLN HXT H N N 236 GLU N N N N 237 GLU CA C N S 238 GLU C C N N 239 GLU O O N N 240 GLU CB C N N 241 GLU CG C N N 242 GLU CD C N N 243 GLU OE1 O N N 244 GLU OE2 O N N 245 GLU OXT O N N 246 GLU H H N N 247 GLU H2 H N N 248 GLU HA H N N 249 GLU HB2 H N N 250 GLU HB3 H N N 251 GLU HG2 H N N 252 GLU HG3 H N N 253 GLU HE2 H N N 254 GLU HXT H N N 255 GLY N N N N 256 GLY CA C N N 257 GLY C C N N 258 GLY O O N N 259 GLY OXT O N N 260 GLY H H N N 261 GLY H2 H N N 262 GLY HA2 H N N 263 GLY HA3 H N N 264 GLY HXT H N N 265 HIS N N N N 266 HIS CA C N S 267 HIS C C N N 268 HIS O O N N 269 HIS CB C N N 270 HIS CG C Y N 271 HIS ND1 N Y N 272 HIS CD2 C Y N 273 HIS CE1 C Y N 274 HIS NE2 N Y N 275 HIS OXT O N N 276 HIS H H N N 277 HIS H2 H N N 278 HIS HA H N N 279 HIS HB2 H N N 280 HIS HB3 H N N 281 HIS HD1 H N N 282 HIS HD2 H N N 283 HIS HE1 H N N 284 HIS HE2 H N N 285 HIS HXT H N N 286 HOH O O N N 287 HOH H1 H N N 288 HOH H2 H N N 289 ILE N N N N 290 ILE CA C N S 291 ILE C C N N 292 ILE O O N N 293 ILE CB C N S 294 ILE CG1 C N N 295 ILE CG2 C N N 296 ILE CD1 C N N 297 ILE OXT O N N 298 ILE H H N N 299 ILE H2 H N N 300 ILE HA H N N 301 ILE HB H N N 302 ILE HG12 H N N 303 ILE HG13 H N N 304 ILE HG21 H N N 305 ILE HG22 H N N 306 ILE HG23 H N N 307 ILE HD11 H N N 308 ILE HD12 H N N 309 ILE HD13 H N N 310 ILE HXT H N N 311 LEU N N N N 312 LEU CA C N S 313 LEU C C N N 314 LEU O O N N 315 LEU CB C N N 316 LEU CG C N N 317 LEU CD1 C N N 318 LEU CD2 C N N 319 LEU OXT O N N 320 LEU H H N N 321 LEU H2 H N N 322 LEU HA H N N 323 LEU HB2 H N N 324 LEU HB3 H N N 325 LEU HG H N N 326 LEU HD11 H N N 327 LEU HD12 H N N 328 LEU HD13 H N N 329 LEU HD21 H N N 330 LEU HD22 H N N 331 LEU HD23 H N N 332 LEU HXT H N N 333 LYS N N N N 334 LYS CA C N S 335 LYS C C N N 336 LYS O O N N 337 LYS CB C N N 338 LYS CG C N N 339 LYS CD C N N 340 LYS CE C N N 341 LYS NZ N N N 342 LYS OXT O N N 343 LYS H H N N 344 LYS H2 H N N 345 LYS HA H N N 346 LYS HB2 H N N 347 LYS HB3 H N N 348 LYS HG2 H N N 349 LYS HG3 H N N 350 LYS HD2 H N N 351 LYS HD3 H N N 352 LYS HE2 H N N 353 LYS HE3 H N N 354 LYS HZ1 H N N 355 LYS HZ2 H N N 356 LYS HZ3 H N N 357 LYS HXT H N N 358 MET N N N N 359 MET CA C N S 360 MET C C N N 361 MET O O N N 362 MET CB C N N 363 MET CG C N N 364 MET SD S N N 365 MET CE C N N 366 MET OXT O N N 367 MET H H N N 368 MET H2 H N N 369 MET HA H N N 370 MET HB2 H N N 371 MET HB3 H N N 372 MET HG2 H N N 373 MET HG3 H N N 374 MET HE1 H N N 375 MET HE2 H N N 376 MET HE3 H N N 377 MET HXT H N N 378 PHE N N N N 379 PHE CA C N S 380 PHE C C N N 381 PHE O O N N 382 PHE CB C N N 383 PHE CG C Y N 384 PHE CD1 C Y N 385 PHE CD2 C Y N 386 PHE CE1 C Y N 387 PHE CE2 C Y N 388 PHE CZ C Y N 389 PHE OXT O N N 390 PHE H H N N 391 PHE H2 H N N 392 PHE HA H N N 393 PHE HB2 H N N 394 PHE HB3 H N N 395 PHE HD1 H N N 396 PHE HD2 H N N 397 PHE HE1 H N N 398 PHE HE2 H N N 399 PHE HZ H N N 400 PHE HXT H N N 401 PRO N N N N 402 PRO CA C N S 403 PRO C C N N 404 PRO O O N N 405 PRO CB C N N 406 PRO CG C N N 407 PRO CD C N N 408 PRO OXT O N N 409 PRO H H N N 410 PRO HA H N N 411 PRO HB2 H N N 412 PRO HB3 H N N 413 PRO HG2 H N N 414 PRO HG3 H N N 415 PRO HD2 H N N 416 PRO HD3 H N N 417 PRO HXT H N N 418 SER N N N N 419 SER CA C N S 420 SER C C N N 421 SER O O N N 422 SER CB C N N 423 SER OG O N N 424 SER OXT O N N 425 SER H H N N 426 SER H2 H N N 427 SER HA H N N 428 SER HB2 H N N 429 SER HB3 H N N 430 SER HG H N N 431 SER HXT H N N 432 THR N N N N 433 THR CA C N S 434 THR C C N N 435 THR O O N N 436 THR CB C N R 437 THR OG1 O N N 438 THR CG2 C N N 439 THR OXT O N N 440 THR H H N N 441 THR H2 H N N 442 THR HA H N N 443 THR HB H N N 444 THR HG1 H N N 445 THR HG21 H N N 446 THR HG22 H N N 447 THR HG23 H N N 448 THR HXT H N N 449 TRP N N N N 450 TRP CA C N S 451 TRP C C N N 452 TRP O O N N 453 TRP CB C N N 454 TRP CG C Y N 455 TRP CD1 C Y N 456 TRP CD2 C Y N 457 TRP NE1 N Y N 458 TRP CE2 C Y N 459 TRP CE3 C Y N 460 TRP CZ2 C Y N 461 TRP CZ3 C Y N 462 TRP CH2 C Y N 463 TRP OXT O N N 464 TRP H H N N 465 TRP H2 H N N 466 TRP HA H N N 467 TRP HB2 H N N 468 TRP HB3 H N N 469 TRP HD1 H N N 470 TRP HE1 H N N 471 TRP HE3 H N N 472 TRP HZ2 H N N 473 TRP HZ3 H N N 474 TRP HH2 H N N 475 TRP HXT H N N 476 TYR N N N N 477 TYR CA C N S 478 TYR C C N N 479 TYR O O N N 480 TYR CB C N N 481 TYR CG C Y N 482 TYR CD1 C Y N 483 TYR CD2 C Y N 484 TYR CE1 C Y N 485 TYR CE2 C Y N 486 TYR CZ C Y N 487 TYR OH O N N 488 TYR OXT O N N 489 TYR H H N N 490 TYR H2 H N N 491 TYR HA H N N 492 TYR HB2 H N N 493 TYR HB3 H N N 494 TYR HD1 H N N 495 TYR HD2 H N N 496 TYR HE1 H N N 497 TYR HE2 H N N 498 TYR HH H N N 499 TYR HXT H N N 500 VAL N N N N 501 VAL CA C N S 502 VAL C C N N 503 VAL O O N N 504 VAL CB C N N 505 VAL CG1 C N N 506 VAL CG2 C N N 507 VAL OXT O N N 508 VAL H H N N 509 VAL H2 H N N 510 VAL HA H N N 511 VAL HB H N N 512 VAL HG11 H N N 513 VAL HG12 H N N 514 VAL HG13 H N N 515 VAL HG21 H N N 516 VAL HG22 H N N 517 VAL HG23 H N N 518 VAL HXT H N N 519 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 DA OP3 P sing N N 70 DA OP3 HOP3 sing N N 71 DA P OP1 doub N N 72 DA P OP2 sing N N 73 DA P "O5'" sing N N 74 DA OP2 HOP2 sing N N 75 DA "O5'" "C5'" sing N N 76 DA "C5'" "C4'" sing N N 77 DA "C5'" "H5'" sing N N 78 DA "C5'" "H5''" sing N N 79 DA "C4'" "O4'" sing N N 80 DA "C4'" "C3'" sing N N 81 DA "C4'" "H4'" sing N N 82 DA "O4'" "C1'" sing N N 83 DA "C3'" "O3'" sing N N 84 DA "C3'" "C2'" sing N N 85 DA "C3'" "H3'" sing N N 86 DA "O3'" "HO3'" sing N N 87 DA "C2'" "C1'" sing N N 88 DA "C2'" "H2'" sing N N 89 DA "C2'" "H2''" sing N N 90 DA "C1'" N9 sing N N 91 DA "C1'" "H1'" sing N N 92 DA N9 C8 sing Y N 93 DA N9 C4 sing Y N 94 DA C8 N7 doub Y N 95 DA C8 H8 sing N N 96 DA N7 C5 sing Y N 97 DA C5 C6 sing Y N 98 DA C5 C4 doub Y N 99 DA C6 N6 sing N N 100 DA C6 N1 doub Y N 101 DA N6 H61 sing N N 102 DA N6 H62 sing N N 103 DA N1 C2 sing Y N 104 DA C2 N3 doub Y N 105 DA C2 H2 sing N N 106 DA N3 C4 sing Y N 107 DC OP3 P sing N N 108 DC OP3 HOP3 sing N N 109 DC P OP1 doub N N 110 DC P OP2 sing N N 111 DC P "O5'" sing N N 112 DC OP2 HOP2 sing N N 113 DC "O5'" "C5'" sing N N 114 DC "C5'" "C4'" sing N N 115 DC "C5'" "H5'" sing N N 116 DC "C5'" "H5''" sing N N 117 DC "C4'" "O4'" sing N N 118 DC "C4'" "C3'" sing N N 119 DC "C4'" "H4'" sing N N 120 DC "O4'" "C1'" sing N N 121 DC "C3'" "O3'" sing N N 122 DC "C3'" "C2'" sing N N 123 DC "C3'" "H3'" sing N N 124 DC "O3'" "HO3'" sing N N 125 DC "C2'" "C1'" sing N N 126 DC "C2'" "H2'" sing N N 127 DC "C2'" "H2''" sing N N 128 DC "C1'" N1 sing N N 129 DC "C1'" "H1'" sing N N 130 DC N1 C2 sing N N 131 DC N1 C6 sing N N 132 DC C2 O2 doub N N 133 DC C2 N3 sing N N 134 DC N3 C4 doub N N 135 DC C4 N4 sing N N 136 DC C4 C5 sing N N 137 DC N4 H41 sing N N 138 DC N4 H42 sing N N 139 DC C5 C6 doub N N 140 DC C5 H5 sing N N 141 DC C6 H6 sing N N 142 DG OP3 P sing N N 143 DG OP3 HOP3 sing N N 144 DG P OP1 doub N N 145 DG P OP2 sing N N 146 DG P "O5'" sing N N 147 DG OP2 HOP2 sing N N 148 DG "O5'" "C5'" sing N N 149 DG "C5'" "C4'" sing N N 150 DG "C5'" "H5'" sing N N 151 DG "C5'" "H5''" sing N N 152 DG "C4'" "O4'" sing N N 153 DG "C4'" "C3'" sing N N 154 DG "C4'" "H4'" sing N N 155 DG "O4'" "C1'" sing N N 156 DG "C3'" "O3'" sing N N 157 DG "C3'" "C2'" sing N N 158 DG "C3'" "H3'" sing N N 159 DG "O3'" "HO3'" sing N N 160 DG "C2'" "C1'" sing N N 161 DG "C2'" "H2'" sing N N 162 DG "C2'" "H2''" sing N N 163 DG "C1'" N9 sing N N 164 DG "C1'" "H1'" sing N N 165 DG N9 C8 sing Y N 166 DG N9 C4 sing Y N 167 DG C8 N7 doub Y N 168 DG C8 H8 sing N N 169 DG N7 C5 sing Y N 170 DG C5 C6 sing N N 171 DG C5 C4 doub Y N 172 DG C6 O6 doub N N 173 DG C6 N1 sing N N 174 DG N1 C2 sing N N 175 DG N1 H1 sing N N 176 DG C2 N2 sing N N 177 DG C2 N3 doub N N 178 DG N2 H21 sing N N 179 DG N2 H22 sing N N 180 DG N3 C4 sing N N 181 DT OP3 P sing N N 182 DT OP3 HOP3 sing N N 183 DT P OP1 doub N N 184 DT P OP2 sing N N 185 DT P "O5'" sing N N 186 DT OP2 HOP2 sing N N 187 DT "O5'" "C5'" sing N N 188 DT "C5'" "C4'" sing N N 189 DT "C5'" "H5'" sing N N 190 DT "C5'" "H5''" sing N N 191 DT "C4'" "O4'" sing N N 192 DT "C4'" "C3'" sing N N 193 DT "C4'" "H4'" sing N N 194 DT "O4'" "C1'" sing N N 195 DT "C3'" "O3'" sing N N 196 DT "C3'" "C2'" sing N N 197 DT "C3'" "H3'" sing N N 198 DT "O3'" "HO3'" sing N N 199 DT "C2'" "C1'" sing N N 200 DT "C2'" "H2'" sing N N 201 DT "C2'" "H2''" sing N N 202 DT "C1'" N1 sing N N 203 DT "C1'" "H1'" sing N N 204 DT N1 C2 sing N N 205 DT N1 C6 sing N N 206 DT C2 O2 doub N N 207 DT C2 N3 sing N N 208 DT N3 C4 sing N N 209 DT N3 H3 sing N N 210 DT C4 O4 doub N N 211 DT C4 C5 sing N N 212 DT C5 C7 sing N N 213 DT C5 C6 doub N N 214 DT C7 H71 sing N N 215 DT C7 H72 sing N N 216 DT C7 H73 sing N N 217 DT C6 H6 sing N N 218 GLN N CA sing N N 219 GLN N H sing N N 220 GLN N H2 sing N N 221 GLN CA C sing N N 222 GLN CA CB sing N N 223 GLN CA HA sing N N 224 GLN C O doub N N 225 GLN C OXT sing N N 226 GLN CB CG sing N N 227 GLN CB HB2 sing N N 228 GLN CB HB3 sing N N 229 GLN CG CD sing N N 230 GLN CG HG2 sing N N 231 GLN CG HG3 sing N N 232 GLN CD OE1 doub N N 233 GLN CD NE2 sing N N 234 GLN NE2 HE21 sing N N 235 GLN NE2 HE22 sing N N 236 GLN OXT HXT sing N N 237 GLU N CA sing N N 238 GLU N H sing N N 239 GLU N H2 sing N N 240 GLU CA C sing N N 241 GLU CA CB sing N N 242 GLU CA HA sing N N 243 GLU C O doub N N 244 GLU C OXT sing N N 245 GLU CB CG sing N N 246 GLU CB HB2 sing N N 247 GLU CB HB3 sing N N 248 GLU CG CD sing N N 249 GLU CG HG2 sing N N 250 GLU CG HG3 sing N N 251 GLU CD OE1 doub N N 252 GLU CD OE2 sing N N 253 GLU OE2 HE2 sing N N 254 GLU OXT HXT sing N N 255 GLY N CA sing N N 256 GLY N H sing N N 257 GLY N H2 sing N N 258 GLY CA C sing N N 259 GLY CA HA2 sing N N 260 GLY CA HA3 sing N N 261 GLY C O doub N N 262 GLY C OXT sing N N 263 GLY OXT HXT sing N N 264 HIS N CA sing N N 265 HIS N H sing N N 266 HIS N H2 sing N N 267 HIS CA C sing N N 268 HIS CA CB sing N N 269 HIS CA HA sing N N 270 HIS C O doub N N 271 HIS C OXT sing N N 272 HIS CB CG sing N N 273 HIS CB HB2 sing N N 274 HIS CB HB3 sing N N 275 HIS CG ND1 sing Y N 276 HIS CG CD2 doub Y N 277 HIS ND1 CE1 doub Y N 278 HIS ND1 HD1 sing N N 279 HIS CD2 NE2 sing Y N 280 HIS CD2 HD2 sing N N 281 HIS CE1 NE2 sing Y N 282 HIS CE1 HE1 sing N N 283 HIS NE2 HE2 sing N N 284 HIS OXT HXT sing N N 285 HOH O H1 sing N N 286 HOH O H2 sing N N 287 ILE N CA sing N N 288 ILE N H sing N N 289 ILE N H2 sing N N 290 ILE CA C sing N N 291 ILE CA CB sing N N 292 ILE CA HA sing N N 293 ILE C O doub N N 294 ILE C OXT sing N N 295 ILE CB CG1 sing N N 296 ILE CB CG2 sing N N 297 ILE CB HB sing N N 298 ILE CG1 CD1 sing N N 299 ILE CG1 HG12 sing N N 300 ILE CG1 HG13 sing N N 301 ILE CG2 HG21 sing N N 302 ILE CG2 HG22 sing N N 303 ILE CG2 HG23 sing N N 304 ILE CD1 HD11 sing N N 305 ILE CD1 HD12 sing N N 306 ILE CD1 HD13 sing N N 307 ILE OXT HXT sing N N 308 LEU N CA sing N N 309 LEU N H sing N N 310 LEU N H2 sing N N 311 LEU CA C sing N N 312 LEU CA CB sing N N 313 LEU CA HA sing N N 314 LEU C O doub N N 315 LEU C OXT sing N N 316 LEU CB CG sing N N 317 LEU CB HB2 sing N N 318 LEU CB HB3 sing N N 319 LEU CG CD1 sing N N 320 LEU CG CD2 sing N N 321 LEU CG HG sing N N 322 LEU CD1 HD11 sing N N 323 LEU CD1 HD12 sing N N 324 LEU CD1 HD13 sing N N 325 LEU CD2 HD21 sing N N 326 LEU CD2 HD22 sing N N 327 LEU CD2 HD23 sing N N 328 LEU OXT HXT sing N N 329 LYS N CA sing N N 330 LYS N H sing N N 331 LYS N H2 sing N N 332 LYS CA C sing N N 333 LYS CA CB sing N N 334 LYS CA HA sing N N 335 LYS C O doub N N 336 LYS C OXT sing N N 337 LYS CB CG sing N N 338 LYS CB HB2 sing N N 339 LYS CB HB3 sing N N 340 LYS CG CD sing N N 341 LYS CG HG2 sing N N 342 LYS CG HG3 sing N N 343 LYS CD CE sing N N 344 LYS CD HD2 sing N N 345 LYS CD HD3 sing N N 346 LYS CE NZ sing N N 347 LYS CE HE2 sing N N 348 LYS CE HE3 sing N N 349 LYS NZ HZ1 sing N N 350 LYS NZ HZ2 sing N N 351 LYS NZ HZ3 sing N N 352 LYS OXT HXT sing N N 353 MET N CA sing N N 354 MET N H sing N N 355 MET N H2 sing N N 356 MET CA C sing N N 357 MET CA CB sing N N 358 MET CA HA sing N N 359 MET C O doub N N 360 MET C OXT sing N N 361 MET CB CG sing N N 362 MET CB HB2 sing N N 363 MET CB HB3 sing N N 364 MET CG SD sing N N 365 MET CG HG2 sing N N 366 MET CG HG3 sing N N 367 MET SD CE sing N N 368 MET CE HE1 sing N N 369 MET CE HE2 sing N N 370 MET CE HE3 sing N N 371 MET OXT HXT sing N N 372 PHE N CA sing N N 373 PHE N H sing N N 374 PHE N H2 sing N N 375 PHE CA C sing N N 376 PHE CA CB sing N N 377 PHE CA HA sing N N 378 PHE C O doub N N 379 PHE C OXT sing N N 380 PHE CB CG sing N N 381 PHE CB HB2 sing N N 382 PHE CB HB3 sing N N 383 PHE CG CD1 doub Y N 384 PHE CG CD2 sing Y N 385 PHE CD1 CE1 sing Y N 386 PHE CD1 HD1 sing N N 387 PHE CD2 CE2 doub Y N 388 PHE CD2 HD2 sing N N 389 PHE CE1 CZ doub Y N 390 PHE CE1 HE1 sing N N 391 PHE CE2 CZ sing Y N 392 PHE CE2 HE2 sing N N 393 PHE CZ HZ sing N N 394 PHE OXT HXT sing N N 395 PRO N CA sing N N 396 PRO N CD sing N N 397 PRO N H sing N N 398 PRO CA C sing N N 399 PRO CA CB sing N N 400 PRO CA HA sing N N 401 PRO C O doub N N 402 PRO C OXT sing N N 403 PRO CB CG sing N N 404 PRO CB HB2 sing N N 405 PRO CB HB3 sing N N 406 PRO CG CD sing N N 407 PRO CG HG2 sing N N 408 PRO CG HG3 sing N N 409 PRO CD HD2 sing N N 410 PRO CD HD3 sing N N 411 PRO OXT HXT sing N N 412 SER N CA sing N N 413 SER N H sing N N 414 SER N H2 sing N N 415 SER CA C sing N N 416 SER CA CB sing N N 417 SER CA HA sing N N 418 SER C O doub N N 419 SER C OXT sing N N 420 SER CB OG sing N N 421 SER CB HB2 sing N N 422 SER CB HB3 sing N N 423 SER OG HG sing N N 424 SER OXT HXT sing N N 425 THR N CA sing N N 426 THR N H sing N N 427 THR N H2 sing N N 428 THR CA C sing N N 429 THR CA CB sing N N 430 THR CA HA sing N N 431 THR C O doub N N 432 THR C OXT sing N N 433 THR CB OG1 sing N N 434 THR CB CG2 sing N N 435 THR CB HB sing N N 436 THR OG1 HG1 sing N N 437 THR CG2 HG21 sing N N 438 THR CG2 HG22 sing N N 439 THR CG2 HG23 sing N N 440 THR OXT HXT sing N N 441 TRP N CA sing N N 442 TRP N H sing N N 443 TRP N H2 sing N N 444 TRP CA C sing N N 445 TRP CA CB sing N N 446 TRP CA HA sing N N 447 TRP C O doub N N 448 TRP C OXT sing N N 449 TRP CB CG sing N N 450 TRP CB HB2 sing N N 451 TRP CB HB3 sing N N 452 TRP CG CD1 doub Y N 453 TRP CG CD2 sing Y N 454 TRP CD1 NE1 sing Y N 455 TRP CD1 HD1 sing N N 456 TRP CD2 CE2 doub Y N 457 TRP CD2 CE3 sing Y N 458 TRP NE1 CE2 sing Y N 459 TRP NE1 HE1 sing N N 460 TRP CE2 CZ2 sing Y N 461 TRP CE3 CZ3 doub Y N 462 TRP CE3 HE3 sing N N 463 TRP CZ2 CH2 doub Y N 464 TRP CZ2 HZ2 sing N N 465 TRP CZ3 CH2 sing Y N 466 TRP CZ3 HZ3 sing N N 467 TRP CH2 HH2 sing N N 468 TRP OXT HXT sing N N 469 TYR N CA sing N N 470 TYR N H sing N N 471 TYR N H2 sing N N 472 TYR CA C sing N N 473 TYR CA CB sing N N 474 TYR CA HA sing N N 475 TYR C O doub N N 476 TYR C OXT sing N N 477 TYR CB CG sing N N 478 TYR CB HB2 sing N N 479 TYR CB HB3 sing N N 480 TYR CG CD1 doub Y N 481 TYR CG CD2 sing Y N 482 TYR CD1 CE1 sing Y N 483 TYR CD1 HD1 sing N N 484 TYR CD2 CE2 doub Y N 485 TYR CD2 HD2 sing N N 486 TYR CE1 CZ doub Y N 487 TYR CE1 HE1 sing N N 488 TYR CE2 CZ sing Y N 489 TYR CE2 HE2 sing N N 490 TYR CZ OH sing N N 491 TYR OH HH sing N N 492 TYR OXT HXT sing N N 493 VAL N CA sing N N 494 VAL N H sing N N 495 VAL N H2 sing N N 496 VAL CA C sing N N 497 VAL CA CB sing N N 498 VAL CA HA sing N N 499 VAL C O doub N N 500 VAL C OXT sing N N 501 VAL CB CG1 sing N N 502 VAL CB CG2 sing N N 503 VAL CB HB sing N N 504 VAL CG1 HG11 sing N N 505 VAL CG1 HG12 sing N N 506 VAL CG1 HG13 sing N N 507 VAL CG2 HG21 sing N N 508 VAL CG2 HG22 sing N N 509 VAL CG2 HG23 sing N N 510 VAL OXT HXT sing N N 511 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 3JXY 'double helix' 3JXY 'b-form double helix' 3JXY 'mismatched base pair' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 B DC 1 1_555 C DG 12 1_555 0.031 -0.066 0.048 -13.229 -4.260 -1.448 1 B_DC1:DG12_C B 1 ? C 12 ? 19 1 1 B DG 2 1_555 C DC 11 1_555 -0.235 -0.147 0.026 9.275 5.506 -0.478 2 B_DG2:DC11_C B 2 ? C 11 ? 19 1 1 B DG 3 1_555 C DC 10 1_555 -0.300 -0.216 0.153 9.124 -6.070 -0.700 3 B_DG3:DC10_C B 3 ? C 10 ? 19 1 1 B DA 4 1_555 C DT 9 1_555 0.139 -0.136 -0.078 5.542 -7.838 -0.913 4 B_DA4:DT9_C B 4 ? C 9 ? 20 1 1 B DC 5 1_555 C DG 8 1_555 0.295 -0.116 -0.047 11.983 -18.958 3.374 5 B_DC5:DG8_C B 5 ? C 8 ? 19 1 1 B DT 6 1_555 C DA 7 1_555 -0.090 -0.082 0.087 -4.472 -20.974 -2.901 6 B_DT6:DA7_C B 6 ? C 7 ? 20 1 1 B DG 7 1_555 C DT 6 1_555 7.507 -2.257 -0.281 -18.584 -26.053 10.359 7 B_DG7:DT6_C B 7 ? C 6 ? ? ? 1 B DA 8 1_555 C DT 5 1_555 0.060 -0.077 0.101 4.763 -10.454 4.364 8 B_DA8:DT5_C B 8 ? C 5 ? 20 1 1 B DC 9 1_555 C DG 4 1_555 0.351 -0.128 -0.126 12.342 -13.150 2.545 9 B_DC9:DG4_C B 9 ? C 4 ? 19 1 1 B DG 10 1_555 C DC 3 1_555 -0.290 -0.129 -0.377 -5.073 1.426 0.937 10 B_DG10:DC3_C B 10 ? C 3 ? 19 1 1 B DG 11 1_555 C DC 2 1_555 -0.058 -0.029 0.224 19.643 1.321 3.907 11 B_DG11:DC2_C B 11 ? C 2 ? 19 1 1 B DG 12 1_555 C DC 1 1_555 -0.567 -0.113 -0.022 3.231 -18.524 0.508 12 B_DG12:DC1_C B 12 ? C 1 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 B DC 1 1_555 C DG 12 1_555 B DG 2 1_555 C DC 11 1_555 0.957 0.286 2.956 2.799 3.085 29.406 -0.039 -1.326 3.045 6.039 -5.480 29.693 1 BB_DC1DG2:DC11DG12_CC B 1 ? C 12 ? B 2 ? C 11 ? 1 B DG 2 1_555 C DC 11 1_555 B DG 3 1_555 C DC 10 1_555 -0.424 -0.301 3.383 -2.262 2.674 31.883 -1.043 0.346 3.368 4.849 4.102 32.070 2 BB_DG2DG3:DC10DC11_CC B 2 ? C 11 ? B 3 ? C 10 ? 1 B DG 3 1_555 C DC 10 1_555 B DA 4 1_555 C DT 9 1_555 -0.090 -0.694 3.406 0.879 4.251 36.149 -1.719 0.269 3.303 6.820 -1.410 36.400 3 BB_DG3DA4:DT9DC10_CC B 3 ? C 10 ? B 4 ? C 9 ? 1 B DA 4 1_555 C DT 9 1_555 B DC 5 1_555 C DG 8 1_555 0.665 -1.003 3.094 -2.537 5.251 32.312 -2.600 -1.576 2.841 9.341 4.512 32.820 4 BB_DA4DC5:DG8DT9_CC B 4 ? C 9 ? B 5 ? C 8 ? 1 B DC 5 1_555 C DG 8 1_555 B DT 6 1_555 C DA 7 1_555 -0.642 -1.436 3.652 -0.838 8.026 35.057 -3.554 0.912 3.269 13.110 1.369 35.945 5 BB_DC5DT6:DA7DG8_CC B 5 ? C 8 ? B 6 ? C 7 ? 1 B DT 6 1_555 C DA 7 1_555 B DG 7 1_555 C DT 6 1_555 -0.378 0.820 4.167 5.648 7.012 61.078 0.380 0.707 4.184 6.860 -5.526 61.674 6 BB_DT6DG7:DT6DA7_CC B 6 ? C 7 ? B 7 ? C 6 ? 1 B DG 7 1_555 C DT 6 1_555 B DA 8 1_555 C DT 5 1_555 0.103 -0.529 2.310 -0.537 4.053 0.396 -32.455 -4.755 -0.313 83.737 11.100 4.108 7 BB_DG7DA8:DT5DT6_CC B 7 ? C 6 ? B 8 ? C 5 ? 1 B DA 8 1_555 C DT 5 1_555 B DC 9 1_555 C DG 4 1_555 0.025 -0.576 3.069 0.155 4.096 32.451 -1.680 -0.020 2.976 7.293 -0.276 32.702 8 BB_DA8DC9:DG4DT5_CC B 8 ? C 5 ? B 9 ? C 4 ? 1 B DC 9 1_555 C DG 4 1_555 B DG 10 1_555 C DC 3 1_555 0.276 -0.634 3.664 4.464 6.537 34.292 -2.131 0.281 3.495 10.907 -7.448 35.167 9 BB_DC9DG10:DC3DG4_CC B 9 ? C 4 ? B 10 ? C 3 ? 1 B DG 10 1_555 C DC 3 1_555 B DG 11 1_555 C DC 2 1_555 0.212 -0.689 2.742 -7.543 8.843 22.453 -3.618 -2.228 2.141 20.997 17.910 25.249 10 BB_DG10DG11:DC2DC3_CC B 10 ? C 3 ? B 11 ? C 2 ? 1 B DG 11 1_555 C DC 2 1_555 B DG 12 1_555 C DC 1 1_555 -0.564 -0.633 3.704 -2.140 -0.914 40.141 -0.803 0.544 3.741 -1.330 3.115 40.206 11 BB_DG11DG12:DC1DC2_CC B 11 ? C 2 ? B 12 ? C 1 ? # _pdbx_entity_nonpoly.entity_id 4 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 3JX7 _pdbx_initial_refinement_model.details 'PDB 3JX7' #