data_3JY1 # _entry.id 3JY1 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.378 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3JY1 pdb_00003jy1 10.2210/pdb3jy1/pdb NDB NA0173 ? ? RCSB RCSB055302 ? ? WWPDB D_1000055302 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 3BVS 'Crystal Structure of Bacillus cereus Alkylpuring DNA Glycosylase AlkD' unspecified PDB 3JX7 'Bacillus cereus Alkylpurine DNA Glycosylase AlkD Bound to DNA Containing a 3mA Analog' unspecified PDB 3JXY 'Bacillus cereus Alkylpurine DNA Glycosylase AlkD Bound to DNA Containing a GT Mismatch' unspecified PDB 3JXZ 'Bacillus cereus Alkylpurine DNA Glycosylase AlkD Bound to DNA Containing an Abasic Site (across from T)' unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3JY1 _pdbx_database_status.recvd_initial_deposition_date 2009-09-21 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Rubinson, E.H.' 1 'Eichman, B.F.' 2 # _citation.id primary _citation.title 'An unprecedented nucleic acid capture mechanism for excision of DNA damage.' _citation.journal_abbrev Nature _citation.journal_volume 468 _citation.page_first 406 _citation.page_last 411 _citation.year 2010 _citation.journal_id_ASTM NATUAS _citation.country UK _citation.journal_id_ISSN 0028-0836 _citation.journal_id_CSD 0006 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 20927102 _citation.pdbx_database_id_DOI 10.1038/nature09428 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Rubinson, E.H.' 1 ? primary 'Gowda, A.S.' 2 ? primary 'Spratt, T.E.' 3 ? primary 'Gold, B.' 4 ? primary 'Eichman, B.F.' 5 ? # _cell.entry_id 3JY1 _cell.length_a 52.125 _cell.length_b 57.493 _cell.length_c 54.069 _cell.angle_alpha 90.00 _cell.angle_beta 101.67 _cell.angle_gamma 90.00 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3JY1 _symmetry.space_group_name_H-M 'P 1 21 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'alkylpurine DNA glycosylase AlkD' 27067.375 1 ? ? ? ? 2 polymer syn ;DNA (5'-D(*TP*GP*GP*GP*(3DR)P*GP*GP*CP*TP*T)-3') ; 2982.927 1 ? ? ? ? 3 polymer syn ;DNA (5'-D(*AP*AP*AP*GP*CP*CP*CP*CP*CP*C)-3') ; 2958.960 1 ? ? ? ? 4 water nat water 18.015 221 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;PMHPFVKALQEHFTAHQNPEKAEPMARYMKNHFLFLGIQTPERRQLLKDIIQIHTLPDQKDFQIIIRELWDLPEREFQAA ALDIMQKYKKHINETHIPFLEELIVTKSWWDSVDSIVPTFLGDIFLKHPELISAYIPKWIASDNIWLQRAAILFQLKYKQ KMDEELLFWIIGQLHSSKEFFIQKAIGWVLREYAKTNPDVVWEYVQNNELAPLSKREAIKHIKQNY ; ;PMHPFVKALQEHFTAHQNPEKAEPMARYMKNHFLFLGIQTPERRQLLKDIIQIHTLPDQKDFQIIIRELWDLPEREFQAA ALDIMQKYKKHINETHIPFLEELIVTKSWWDSVDSIVPTFLGDIFLKHPELISAYIPKWIASDNIWLQRAAILFQLKYKQ KMDEELLFWIIGQLHSSKEFFIQKAIGWVLREYAKTNPDVVWEYVQNNELAPLSKREAIKHIKQNY ; A ? 2 polydeoxyribonucleotide no yes '(DT)(DG)(DG)(DG)(3DR)(DG)(DG)(DC)(DT)(DT)' TGGGNGGCTT B ? 3 polydeoxyribonucleotide no no '(DA)(DA)(DA)(DG)(DC)(DC)(DC)(DC)(DC)(DC)' AAAGCCCCCC C ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 PRO n 1 2 MET n 1 3 HIS n 1 4 PRO n 1 5 PHE n 1 6 VAL n 1 7 LYS n 1 8 ALA n 1 9 LEU n 1 10 GLN n 1 11 GLU n 1 12 HIS n 1 13 PHE n 1 14 THR n 1 15 ALA n 1 16 HIS n 1 17 GLN n 1 18 ASN n 1 19 PRO n 1 20 GLU n 1 21 LYS n 1 22 ALA n 1 23 GLU n 1 24 PRO n 1 25 MET n 1 26 ALA n 1 27 ARG n 1 28 TYR n 1 29 MET n 1 30 LYS n 1 31 ASN n 1 32 HIS n 1 33 PHE n 1 34 LEU n 1 35 PHE n 1 36 LEU n 1 37 GLY n 1 38 ILE n 1 39 GLN n 1 40 THR n 1 41 PRO n 1 42 GLU n 1 43 ARG n 1 44 ARG n 1 45 GLN n 1 46 LEU n 1 47 LEU n 1 48 LYS n 1 49 ASP n 1 50 ILE n 1 51 ILE n 1 52 GLN n 1 53 ILE n 1 54 HIS n 1 55 THR n 1 56 LEU n 1 57 PRO n 1 58 ASP n 1 59 GLN n 1 60 LYS n 1 61 ASP n 1 62 PHE n 1 63 GLN n 1 64 ILE n 1 65 ILE n 1 66 ILE n 1 67 ARG n 1 68 GLU n 1 69 LEU n 1 70 TRP n 1 71 ASP n 1 72 LEU n 1 73 PRO n 1 74 GLU n 1 75 ARG n 1 76 GLU n 1 77 PHE n 1 78 GLN n 1 79 ALA n 1 80 ALA n 1 81 ALA n 1 82 LEU n 1 83 ASP n 1 84 ILE n 1 85 MET n 1 86 GLN n 1 87 LYS n 1 88 TYR n 1 89 LYS n 1 90 LYS n 1 91 HIS n 1 92 ILE n 1 93 ASN n 1 94 GLU n 1 95 THR n 1 96 HIS n 1 97 ILE n 1 98 PRO n 1 99 PHE n 1 100 LEU n 1 101 GLU n 1 102 GLU n 1 103 LEU n 1 104 ILE n 1 105 VAL n 1 106 THR n 1 107 LYS n 1 108 SER n 1 109 TRP n 1 110 TRP n 1 111 ASP n 1 112 SER n 1 113 VAL n 1 114 ASP n 1 115 SER n 1 116 ILE n 1 117 VAL n 1 118 PRO n 1 119 THR n 1 120 PHE n 1 121 LEU n 1 122 GLY n 1 123 ASP n 1 124 ILE n 1 125 PHE n 1 126 LEU n 1 127 LYS n 1 128 HIS n 1 129 PRO n 1 130 GLU n 1 131 LEU n 1 132 ILE n 1 133 SER n 1 134 ALA n 1 135 TYR n 1 136 ILE n 1 137 PRO n 1 138 LYS n 1 139 TRP n 1 140 ILE n 1 141 ALA n 1 142 SER n 1 143 ASP n 1 144 ASN n 1 145 ILE n 1 146 TRP n 1 147 LEU n 1 148 GLN n 1 149 ARG n 1 150 ALA n 1 151 ALA n 1 152 ILE n 1 153 LEU n 1 154 PHE n 1 155 GLN n 1 156 LEU n 1 157 LYS n 1 158 TYR n 1 159 LYS n 1 160 GLN n 1 161 LYS n 1 162 MET n 1 163 ASP n 1 164 GLU n 1 165 GLU n 1 166 LEU n 1 167 LEU n 1 168 PHE n 1 169 TRP n 1 170 ILE n 1 171 ILE n 1 172 GLY n 1 173 GLN n 1 174 LEU n 1 175 HIS n 1 176 SER n 1 177 SER n 1 178 LYS n 1 179 GLU n 1 180 PHE n 1 181 PHE n 1 182 ILE n 1 183 GLN n 1 184 LYS n 1 185 ALA n 1 186 ILE n 1 187 GLY n 1 188 TRP n 1 189 VAL n 1 190 LEU n 1 191 ARG n 1 192 GLU n 1 193 TYR n 1 194 ALA n 1 195 LYS n 1 196 THR n 1 197 ASN n 1 198 PRO n 1 199 ASP n 1 200 VAL n 1 201 VAL n 1 202 TRP n 1 203 GLU n 1 204 TYR n 1 205 VAL n 1 206 GLN n 1 207 ASN n 1 208 ASN n 1 209 GLU n 1 210 LEU n 1 211 ALA n 1 212 PRO n 1 213 LEU n 1 214 SER n 1 215 LYS n 1 216 ARG n 1 217 GLU n 1 218 ALA n 1 219 ILE n 1 220 LYS n 1 221 HIS n 1 222 ILE n 1 223 LYS n 1 224 GLN n 1 225 ASN n 1 226 TYR n 2 1 DT n 2 2 DG n 2 3 DG n 2 4 DG n 2 5 3DR n 2 6 DG n 2 7 DG n 2 8 DC n 2 9 DT n 2 10 DT n 3 1 DA n 3 2 DA n 3 3 DA n 3 4 DG n 3 5 DC n 3 6 DC n 3 7 DC n 3 8 DC n 3 9 DC n 3 10 DC n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'AlkD, BC_4913' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain 'ATCC 10987' _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Bacillus cereus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 222523 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain HMS174 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pBG103 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _struct_ref.entity_id _struct_ref.pdbx_db_accession _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_db_isoform 1 Q816E8 1 UNP Q816E8_BACCR 1 ;MHPFVKALQEHFTAHQNPEKAEPMARYMKNHFLFLGIQTPERRQLLKDIIQIHTLPDQKDFQIIIRELWDLPEREFQAAA LDIMQKYKKHINETHIPFLEELIVTKSWWDSVDSIVPTFLGDIFLKHPELISAYIPKWIASDNIWLQRAAILFQLKYKQK MDEELLFWIIGQLHSSKEFFIQKAIGWVLREYAKTNPDVVWEYVQNNELAPLSKREAIKHIKQNY ; ? 2 3JY1 2 PDB 3JY1 1 TGGGXGGCTT ? 3 3JY1 3 PDB 3JY1 1 AAAGCCCCCC ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3JY1 A 2 ? 226 ? Q816E8 1 ? 225 ? 1 225 2 2 3JY1 B 1 ? 10 ? 3JY1 1 ? 10 ? 1 10 3 3 3JY1 C 1 ? 10 ? 3JY1 11 ? 20 ? 11 20 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 3JY1 _struct_ref_seq_dif.mon_id PRO _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 1 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code Q816E8 _struct_ref_seq_dif.db_mon_id ? _struct_ref_seq_dif.pdbx_seq_db_seq_num ? _struct_ref_seq_dif.details 'expression tag' _struct_ref_seq_dif.pdbx_auth_seq_num 0 _struct_ref_seq_dif.pdbx_ordinal 1 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 3DR 'DNA linking' . "1',2'-DIDEOXYRIBOFURANOSE-5'-PHOSPHATE" 'ABASIC DIDEOXYRIBOSE' 'C5 H11 O6 P' 198.111 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3JY1 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.40 _exptl_crystal.density_percent_sol 48.83 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 289 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.pdbx_details '.1 M BisTris pH 6.5 .075 M NaCl, 20% PEG 3350, 5% glycerol, VAPOR DIFFUSION, SITTING DROP, temperature 289K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'MAR scanner 300 mm plate' _diffrn_detector.pdbx_collection_date 2007-08-21 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Si(111)' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength .97850 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 21-ID-D' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 21-ID-D _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list .97850 # _reflns.entry_id 3JY1 _reflns.observed_criterion_sigma_I 0 _reflns.observed_criterion_sigma_F 0 _reflns.d_resolution_low 41.1 _reflns.d_resolution_high 1.75 _reflns.number_obs 29043 _reflns.number_all 31466 _reflns.percent_possible_obs 92.3 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value .049 _reflns.pdbx_netI_over_sigmaI 30.8 _reflns.B_iso_Wilson_estimate 26.8 _reflns.pdbx_redundancy 3.6 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.75 _reflns_shell.d_res_low 1.81 _reflns_shell.percent_possible_all 65.7 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value .351 _reflns_shell.meanI_over_sigI_obs 3.0 _reflns_shell.pdbx_redundancy 3.2 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 2056 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 3JY1 _refine.ls_number_reflns_obs 28987 _refine.ls_number_reflns_all 31499 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.35 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 41.1 _refine.ls_d_res_high 1.754 _refine.ls_percent_reflns_obs 91.98 _refine.ls_R_factor_obs 0.1842 _refine.ls_R_factor_all 0.2089 _refine.ls_R_factor_R_work 0.1831 _refine.ls_R_factor_R_free 0.2041 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.01 _refine.ls_number_reflns_R_free 1452 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 43.93 _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol 0.360 _refine.solvent_model_param_bsol 61.709 _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model 'PDB 3BVS' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details random _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.01 _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1889 _refine_hist.pdbx_number_atoms_nucleic_acid 393 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 221 _refine_hist.number_atoms_total 2503 _refine_hist.d_res_high 1.754 _refine_hist.d_res_low 41.1 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function f_bond_d 0.005 ? ? 2386 'X-RAY DIFFRACTION' ? f_angle_d 0.997 ? ? 3314 'X-RAY DIFFRACTION' ? f_dihedral_angle_d 20.823 ? ? 900 'X-RAY DIFFRACTION' ? f_chiral_restr 0.070 ? ? 360 'X-RAY DIFFRACTION' ? f_plane_restr 0.004 ? ? 349 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.pdbx_refine_id . 1.7536 1.8163 1909 0.2185 64.00 0.2706 . . 94 . . . . 'X-RAY DIFFRACTION' . 1.8163 1.8890 2301 0.2250 77.00 0.2371 . . 93 . . . . 'X-RAY DIFFRACTION' . 1.8890 1.9750 2561 0.2327 86.00 0.2692 . . 145 . . . . 'X-RAY DIFFRACTION' . 1.9750 2.0791 2858 0.2185 95.00 0.2625 . . 149 . . . . 'X-RAY DIFFRACTION' . 2.0791 2.2094 2961 0.1973 100.00 0.2406 . . 157 . . . . 'X-RAY DIFFRACTION' . 2.2094 2.3800 2980 0.1805 100.00 0.2424 . . 154 . . . . 'X-RAY DIFFRACTION' . 2.3800 2.6194 2991 0.1783 100.00 0.2262 . . 160 . . . . 'X-RAY DIFFRACTION' . 2.6194 2.9984 2981 0.1896 100.00 0.2122 . . 161 . . . . 'X-RAY DIFFRACTION' . 2.9984 3.7772 2986 0.1669 100.00 0.1838 . . 163 . . . . 'X-RAY DIFFRACTION' . 3.7772 41.1546 3007 0.1674 98.00 0.1717 . . 176 . . . . 'X-RAY DIFFRACTION' # _struct.entry_id 3JY1 _struct.title 'Bacillus cereus Alkylpurine DNA Glycosylase AlkD Bound to DNA Containing an Abasic Site (across from C)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3JY1 _struct_keywords.pdbx_keywords hydrolase/DNA _struct_keywords.text 'HEAT repeat, DNA binding, DNA glycosylase, DNA alkylation, lyase-DNA COMPLEX, hydrolase-DNA COMPLEX' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 4 ? F N N 4 ? # _struct_biol.id 1 _struct_biol.details 'biological unit is asymmetric unit' # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 HIS A 3 ? HIS A 16 ? HIS A 2 HIS A 15 1 ? 14 HELX_P HELX_P2 2 ASN A 18 ? MET A 29 ? ASN A 17 MET A 28 1 ? 12 HELX_P HELX_P3 3 GLN A 39 ? THR A 55 ? GLN A 38 THR A 54 1 ? 17 HELX_P HELX_P4 4 ASP A 58 ? LYS A 60 ? ASP A 57 LYS A 59 5 ? 3 HELX_P HELX_P5 5 ASP A 61 ? LEU A 72 ? ASP A 60 LEU A 71 1 ? 12 HELX_P HELX_P6 6 GLU A 74 ? TYR A 88 ? GLU A 73 TYR A 87 1 ? 15 HELX_P HELX_P7 7 LYS A 89 ? ILE A 92 ? LYS A 88 ILE A 91 5 ? 4 HELX_P HELX_P8 8 ASN A 93 ? THR A 95 ? ASN A 92 THR A 94 5 ? 3 HELX_P HELX_P9 9 HIS A 96 ? THR A 106 ? HIS A 95 THR A 105 1 ? 11 HELX_P HELX_P10 10 TRP A 109 ? VAL A 117 ? TRP A 108 VAL A 116 1 ? 9 HELX_P HELX_P11 11 THR A 119 ? HIS A 128 ? THR A 118 HIS A 127 1 ? 10 HELX_P HELX_P12 12 LEU A 131 ? SER A 142 ? LEU A 130 SER A 141 1 ? 12 HELX_P HELX_P13 13 ASN A 144 ? PHE A 154 ? ASN A 143 PHE A 153 1 ? 11 HELX_P HELX_P14 14 TYR A 158 ? MET A 162 ? TYR A 157 MET A 161 5 ? 5 HELX_P HELX_P15 15 ASP A 163 ? HIS A 175 ? ASP A 162 HIS A 174 1 ? 13 HELX_P HELX_P16 16 GLU A 179 ? LYS A 195 ? GLU A 178 LYS A 194 1 ? 17 HELX_P HELX_P17 17 ASN A 197 ? ASN A 208 ? ASN A 196 ASN A 207 1 ? 12 HELX_P HELX_P18 18 ALA A 211 ? LYS A 220 ? ALA A 210 LYS A 219 1 ? 10 HELX_P HELX_P19 19 ILE A 222 ? TYR A 226 ? ILE A 221 TYR A 225 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? B DG 4 "O3'" ? ? ? 1_555 B 3DR 5 P ? ? B DG 4 B 3DR 5 1_555 ? ? ? ? ? ? ? 1.601 ? ? covale2 covale both ? B 3DR 5 "O3'" ? ? ? 1_555 B DG 6 P ? ? B 3DR 5 B DG 6 1_555 ? ? ? ? ? ? ? 1.601 ? ? hydrog1 hydrog ? ? B DG 2 N1 ? ? ? 1_555 C DC 10 N3 ? ? B DG 2 C DC 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? B DG 2 N2 ? ? ? 1_555 C DC 10 O2 ? ? B DG 2 C DC 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? B DG 2 O6 ? ? ? 1_555 C DC 10 N4 ? ? B DG 2 C DC 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? B DG 3 N1 ? ? ? 1_555 C DC 9 N3 ? ? B DG 3 C DC 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? B DG 3 N2 ? ? ? 1_555 C DC 9 O2 ? ? B DG 3 C DC 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? B DG 3 O6 ? ? ? 1_555 C DC 9 N4 ? ? B DG 3 C DC 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? B DG 4 N1 ? ? ? 1_555 C DC 8 N3 ? ? B DG 4 C DC 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? B DG 4 N2 ? ? ? 1_555 C DC 8 O2 ? ? B DG 4 C DC 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? B DG 4 O6 ? ? ? 1_555 C DC 8 N4 ? ? B DG 4 C DC 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? B DG 6 N1 ? ? ? 1_555 C DC 6 N3 ? ? B DG 6 C DC 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? B DG 6 N2 ? ? ? 1_555 C DC 6 O2 ? ? B DG 6 C DC 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? B DG 6 O6 ? ? ? 1_555 C DC 6 N4 ? ? B DG 6 C DC 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? B DG 7 N1 ? ? ? 1_555 C DC 5 N3 ? ? B DG 7 C DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? B DG 7 N2 ? ? ? 1_555 C DC 5 O2 ? ? B DG 7 C DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? B DG 7 O6 ? ? ? 1_555 C DC 5 N4 ? ? B DG 7 C DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? B DC 8 N3 ? ? ? 1_555 C DG 4 N1 ? ? B DC 8 C DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? B DC 8 N4 ? ? ? 1_555 C DG 4 O6 ? ? B DC 8 C DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? B DC 8 O2 ? ? ? 1_555 C DG 4 N2 ? ? B DC 8 C DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? B DT 9 N3 ? ? ? 1_555 C DA 3 N1 ? ? B DT 9 C DA 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? B DT 9 O4 ? ? ? 1_555 C DA 3 N6 ? ? B DT 9 C DA 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? B DT 10 N3 ? ? ? 1_555 C DA 2 N1 ? ? B DT 10 C DA 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? B DT 10 O4 ? ? ? 1_555 C DA 2 N6 ? ? B DT 10 C DA 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # _database_PDB_matrix.entry_id 3JY1 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3JY1 _atom_sites.fract_transf_matrix[1][1] 0.019185 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.003962 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.017393 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.018885 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 PRO 1 0 0 PRO PRO A . n A 1 2 MET 2 1 1 MET MET A . n A 1 3 HIS 3 2 2 HIS HIS A . n A 1 4 PRO 4 3 3 PRO PRO A . n A 1 5 PHE 5 4 4 PHE PHE A . n A 1 6 VAL 6 5 5 VAL VAL A . n A 1 7 LYS 7 6 6 LYS LYS A . n A 1 8 ALA 8 7 7 ALA ALA A . n A 1 9 LEU 9 8 8 LEU LEU A . n A 1 10 GLN 10 9 9 GLN GLN A . n A 1 11 GLU 11 10 10 GLU GLU A . n A 1 12 HIS 12 11 11 HIS HIS A . n A 1 13 PHE 13 12 12 PHE PHE A . n A 1 14 THR 14 13 13 THR THR A . n A 1 15 ALA 15 14 14 ALA ALA A . n A 1 16 HIS 16 15 15 HIS HIS A . n A 1 17 GLN 17 16 16 GLN GLN A . n A 1 18 ASN 18 17 17 ASN ASN A . n A 1 19 PRO 19 18 18 PRO PRO A . n A 1 20 GLU 20 19 19 GLU GLU A . n A 1 21 LYS 21 20 20 LYS LYS A . n A 1 22 ALA 22 21 21 ALA ALA A . n A 1 23 GLU 23 22 22 GLU GLU A . n A 1 24 PRO 24 23 23 PRO PRO A . n A 1 25 MET 25 24 24 MET MET A . n A 1 26 ALA 26 25 25 ALA ALA A . n A 1 27 ARG 27 26 26 ARG ARG A . n A 1 28 TYR 28 27 27 TYR TYR A . n A 1 29 MET 29 28 28 MET MET A . n A 1 30 LYS 30 29 29 LYS LYS A . n A 1 31 ASN 31 30 30 ASN ASN A . n A 1 32 HIS 32 31 31 HIS HIS A . n A 1 33 PHE 33 32 32 PHE PHE A . n A 1 34 LEU 34 33 33 LEU LEU A . n A 1 35 PHE 35 34 34 PHE PHE A . n A 1 36 LEU 36 35 35 LEU LEU A . n A 1 37 GLY 37 36 36 GLY GLY A . n A 1 38 ILE 38 37 37 ILE ILE A . n A 1 39 GLN 39 38 38 GLN GLN A . n A 1 40 THR 40 39 39 THR THR A . n A 1 41 PRO 41 40 40 PRO PRO A . n A 1 42 GLU 42 41 41 GLU GLU A . n A 1 43 ARG 43 42 42 ARG ARG A . n A 1 44 ARG 44 43 43 ARG ARG A . n A 1 45 GLN 45 44 44 GLN GLN A . n A 1 46 LEU 46 45 45 LEU LEU A . n A 1 47 LEU 47 46 46 LEU LEU A . n A 1 48 LYS 48 47 47 LYS LYS A . n A 1 49 ASP 49 48 48 ASP ASP A . n A 1 50 ILE 50 49 49 ILE ILE A . n A 1 51 ILE 51 50 50 ILE ILE A . n A 1 52 GLN 52 51 51 GLN GLN A . n A 1 53 ILE 53 52 52 ILE ILE A . n A 1 54 HIS 54 53 53 HIS HIS A . n A 1 55 THR 55 54 54 THR THR A . n A 1 56 LEU 56 55 55 LEU LEU A . n A 1 57 PRO 57 56 56 PRO PRO A . n A 1 58 ASP 58 57 57 ASP ASP A . n A 1 59 GLN 59 58 58 GLN GLN A . n A 1 60 LYS 60 59 59 LYS LYS A . n A 1 61 ASP 61 60 60 ASP ASP A . n A 1 62 PHE 62 61 61 PHE PHE A . n A 1 63 GLN 63 62 62 GLN GLN A . n A 1 64 ILE 64 63 63 ILE ILE A . n A 1 65 ILE 65 64 64 ILE ILE A . n A 1 66 ILE 66 65 65 ILE ILE A . n A 1 67 ARG 67 66 66 ARG ARG A . n A 1 68 GLU 68 67 67 GLU GLU A . n A 1 69 LEU 69 68 68 LEU LEU A . n A 1 70 TRP 70 69 69 TRP TRP A . n A 1 71 ASP 71 70 70 ASP ASP A . n A 1 72 LEU 72 71 71 LEU LEU A . n A 1 73 PRO 73 72 72 PRO PRO A . n A 1 74 GLU 74 73 73 GLU GLU A . n A 1 75 ARG 75 74 74 ARG ARG A . n A 1 76 GLU 76 75 75 GLU GLU A . n A 1 77 PHE 77 76 76 PHE PHE A . n A 1 78 GLN 78 77 77 GLN GLN A . n A 1 79 ALA 79 78 78 ALA ALA A . n A 1 80 ALA 80 79 79 ALA ALA A . n A 1 81 ALA 81 80 80 ALA ALA A . n A 1 82 LEU 82 81 81 LEU LEU A . n A 1 83 ASP 83 82 82 ASP ASP A . n A 1 84 ILE 84 83 83 ILE ILE A . n A 1 85 MET 85 84 84 MET MET A . n A 1 86 GLN 86 85 85 GLN GLN A . n A 1 87 LYS 87 86 86 LYS LYS A . n A 1 88 TYR 88 87 87 TYR TYR A . n A 1 89 LYS 89 88 88 LYS LYS A . n A 1 90 LYS 90 89 89 LYS LYS A . n A 1 91 HIS 91 90 90 HIS HIS A . n A 1 92 ILE 92 91 91 ILE ILE A . n A 1 93 ASN 93 92 92 ASN ASN A . n A 1 94 GLU 94 93 93 GLU GLU A . n A 1 95 THR 95 94 94 THR THR A . n A 1 96 HIS 96 95 95 HIS HIS A . n A 1 97 ILE 97 96 96 ILE ILE A . n A 1 98 PRO 98 97 97 PRO PRO A . n A 1 99 PHE 99 98 98 PHE PHE A . n A 1 100 LEU 100 99 99 LEU LEU A . n A 1 101 GLU 101 100 100 GLU GLU A . n A 1 102 GLU 102 101 101 GLU GLU A . n A 1 103 LEU 103 102 102 LEU LEU A . n A 1 104 ILE 104 103 103 ILE ILE A . n A 1 105 VAL 105 104 104 VAL VAL A . n A 1 106 THR 106 105 105 THR THR A . n A 1 107 LYS 107 106 106 LYS LYS A . n A 1 108 SER 108 107 107 SER SER A . n A 1 109 TRP 109 108 108 TRP TRP A . n A 1 110 TRP 110 109 109 TRP TRP A . n A 1 111 ASP 111 110 110 ASP ASP A . n A 1 112 SER 112 111 111 SER SER A . n A 1 113 VAL 113 112 112 VAL VAL A . n A 1 114 ASP 114 113 113 ASP ASP A . n A 1 115 SER 115 114 114 SER SER A . n A 1 116 ILE 116 115 115 ILE ILE A . n A 1 117 VAL 117 116 116 VAL VAL A . n A 1 118 PRO 118 117 117 PRO PRO A . n A 1 119 THR 119 118 118 THR THR A . n A 1 120 PHE 120 119 119 PHE PHE A . n A 1 121 LEU 121 120 120 LEU LEU A . n A 1 122 GLY 122 121 121 GLY GLY A . n A 1 123 ASP 123 122 122 ASP ASP A . n A 1 124 ILE 124 123 123 ILE ILE A . n A 1 125 PHE 125 124 124 PHE PHE A . n A 1 126 LEU 126 125 125 LEU LEU A . n A 1 127 LYS 127 126 126 LYS LYS A . n A 1 128 HIS 128 127 127 HIS HIS A . n A 1 129 PRO 129 128 128 PRO PRO A . n A 1 130 GLU 130 129 129 GLU GLU A . n A 1 131 LEU 131 130 130 LEU LEU A . n A 1 132 ILE 132 131 131 ILE ILE A . n A 1 133 SER 133 132 132 SER SER A . n A 1 134 ALA 134 133 133 ALA ALA A . n A 1 135 TYR 135 134 134 TYR TYR A . n A 1 136 ILE 136 135 135 ILE ILE A . n A 1 137 PRO 137 136 136 PRO PRO A . n A 1 138 LYS 138 137 137 LYS LYS A . n A 1 139 TRP 139 138 138 TRP TRP A . n A 1 140 ILE 140 139 139 ILE ILE A . n A 1 141 ALA 141 140 140 ALA ALA A . n A 1 142 SER 142 141 141 SER SER A . n A 1 143 ASP 143 142 142 ASP ASP A . n A 1 144 ASN 144 143 143 ASN ASN A . n A 1 145 ILE 145 144 144 ILE ILE A . n A 1 146 TRP 146 145 145 TRP TRP A . n A 1 147 LEU 147 146 146 LEU LEU A . n A 1 148 GLN 148 147 147 GLN GLN A . n A 1 149 ARG 149 148 148 ARG ARG A . n A 1 150 ALA 150 149 149 ALA ALA A . n A 1 151 ALA 151 150 150 ALA ALA A . n A 1 152 ILE 152 151 151 ILE ILE A . n A 1 153 LEU 153 152 152 LEU LEU A . n A 1 154 PHE 154 153 153 PHE PHE A . n A 1 155 GLN 155 154 154 GLN GLN A . n A 1 156 LEU 156 155 155 LEU LEU A . n A 1 157 LYS 157 156 156 LYS LYS A . n A 1 158 TYR 158 157 157 TYR TYR A . n A 1 159 LYS 159 158 158 LYS LYS A . n A 1 160 GLN 160 159 159 GLN GLN A . n A 1 161 LYS 161 160 160 LYS LYS A . n A 1 162 MET 162 161 161 MET MET A . n A 1 163 ASP 163 162 162 ASP ASP A . n A 1 164 GLU 164 163 163 GLU GLU A . n A 1 165 GLU 165 164 164 GLU GLU A . n A 1 166 LEU 166 165 165 LEU LEU A . n A 1 167 LEU 167 166 166 LEU LEU A . n A 1 168 PHE 168 167 167 PHE PHE A . n A 1 169 TRP 169 168 168 TRP TRP A . n A 1 170 ILE 170 169 169 ILE ILE A . n A 1 171 ILE 171 170 170 ILE ILE A . n A 1 172 GLY 172 171 171 GLY GLY A . n A 1 173 GLN 173 172 172 GLN GLN A . n A 1 174 LEU 174 173 173 LEU LEU A . n A 1 175 HIS 175 174 174 HIS HIS A . n A 1 176 SER 176 175 175 SER SER A . n A 1 177 SER 177 176 176 SER SER A . n A 1 178 LYS 178 177 177 LYS LYS A . n A 1 179 GLU 179 178 178 GLU GLU A . n A 1 180 PHE 180 179 179 PHE PHE A . n A 1 181 PHE 181 180 180 PHE PHE A . n A 1 182 ILE 182 181 181 ILE ILE A . n A 1 183 GLN 183 182 182 GLN GLN A . n A 1 184 LYS 184 183 183 LYS LYS A . n A 1 185 ALA 185 184 184 ALA ALA A . n A 1 186 ILE 186 185 185 ILE ILE A . n A 1 187 GLY 187 186 186 GLY GLY A . n A 1 188 TRP 188 187 187 TRP TRP A . n A 1 189 VAL 189 188 188 VAL VAL A . n A 1 190 LEU 190 189 189 LEU LEU A . n A 1 191 ARG 191 190 190 ARG ARG A . n A 1 192 GLU 192 191 191 GLU GLU A . n A 1 193 TYR 193 192 192 TYR TYR A . n A 1 194 ALA 194 193 193 ALA ALA A . n A 1 195 LYS 195 194 194 LYS LYS A . n A 1 196 THR 196 195 195 THR THR A . n A 1 197 ASN 197 196 196 ASN ASN A . n A 1 198 PRO 198 197 197 PRO PRO A . n A 1 199 ASP 199 198 198 ASP ASP A . n A 1 200 VAL 200 199 199 VAL VAL A . n A 1 201 VAL 201 200 200 VAL VAL A . n A 1 202 TRP 202 201 201 TRP TRP A . n A 1 203 GLU 203 202 202 GLU GLU A . n A 1 204 TYR 204 203 203 TYR TYR A . n A 1 205 VAL 205 204 204 VAL VAL A . n A 1 206 GLN 206 205 205 GLN GLN A . n A 1 207 ASN 207 206 206 ASN ASN A . n A 1 208 ASN 208 207 207 ASN ASN A . n A 1 209 GLU 209 208 208 GLU GLU A . n A 1 210 LEU 210 209 209 LEU LEU A . n A 1 211 ALA 211 210 210 ALA ALA A . n A 1 212 PRO 212 211 211 PRO PRO A . n A 1 213 LEU 213 212 212 LEU LEU A . n A 1 214 SER 214 213 213 SER SER A . n A 1 215 LYS 215 214 214 LYS LYS A . n A 1 216 ARG 216 215 215 ARG ARG A . n A 1 217 GLU 217 216 216 GLU GLU A . n A 1 218 ALA 218 217 217 ALA ALA A . n A 1 219 ILE 219 218 218 ILE ILE A . n A 1 220 LYS 220 219 219 LYS LYS A . n A 1 221 HIS 221 220 220 HIS HIS A . n A 1 222 ILE 222 221 221 ILE ILE A . n A 1 223 LYS 223 222 222 LYS LYS A . n A 1 224 GLN 224 223 223 GLN GLN A . n A 1 225 ASN 225 224 224 ASN ASN A . n A 1 226 TYR 226 225 225 TYR TYR A . n B 2 1 DT 1 1 1 DT T B . n B 2 2 DG 2 2 2 DG G B . n B 2 3 DG 3 3 3 DG G B . n B 2 4 DG 4 4 4 DG G B . n B 2 5 3DR 5 5 5 3DR 3DR B . n B 2 6 DG 6 6 6 DG G B . n B 2 7 DG 7 7 7 DG G B . n B 2 8 DC 8 8 8 DC C B . n B 2 9 DT 9 9 9 DT T B . n B 2 10 DT 10 10 10 DT T B . n C 3 1 DA 1 11 11 DA A C . n C 3 2 DA 2 12 12 DA A C . n C 3 3 DA 3 13 13 DA A C . n C 3 4 DG 4 14 14 DG G C . n C 3 5 DC 5 15 15 DC C C . n C 3 6 DC 6 16 16 DC C C . n C 3 7 DC 7 17 17 DC C C . n C 3 8 DC 8 18 18 DC C C . n C 3 9 DC 9 19 19 DC C C . n C 3 10 DC 10 20 20 DC C C . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 HOH 1 226 1 HOH HOH A . D 4 HOH 2 227 2 HOH HOH A . D 4 HOH 3 228 4 HOH HOH A . D 4 HOH 4 229 5 HOH HOH A . D 4 HOH 5 230 6 HOH HOH A . D 4 HOH 6 231 7 HOH HOH A . D 4 HOH 7 232 8 HOH HOH A . D 4 HOH 8 233 9 HOH HOH A . D 4 HOH 9 234 10 HOH HOH A . D 4 HOH 10 235 11 HOH HOH A . D 4 HOH 11 236 12 HOH HOH A . D 4 HOH 12 237 13 HOH HOH A . D 4 HOH 13 238 14 HOH HOH A . D 4 HOH 14 239 15 HOH HOH A . D 4 HOH 15 240 16 HOH HOH A . D 4 HOH 16 241 17 HOH HOH A . D 4 HOH 17 242 18 HOH HOH A . D 4 HOH 18 243 19 HOH HOH A . D 4 HOH 19 244 20 HOH HOH A . D 4 HOH 20 245 21 HOH HOH A . D 4 HOH 21 246 22 HOH HOH A . D 4 HOH 22 247 23 HOH HOH A . D 4 HOH 23 248 24 HOH HOH A . D 4 HOH 24 249 26 HOH HOH A . D 4 HOH 25 250 29 HOH HOH A . D 4 HOH 26 251 30 HOH HOH A . D 4 HOH 27 252 31 HOH HOH A . D 4 HOH 28 253 32 HOH HOH A . D 4 HOH 29 254 33 HOH HOH A . D 4 HOH 30 255 34 HOH HOH A . D 4 HOH 31 256 35 HOH HOH A . D 4 HOH 32 257 36 HOH HOH A . D 4 HOH 33 258 37 HOH HOH A . D 4 HOH 34 259 38 HOH HOH A . D 4 HOH 35 260 39 HOH HOH A . D 4 HOH 36 261 40 HOH HOH A . D 4 HOH 37 262 41 HOH HOH A . D 4 HOH 38 263 42 HOH HOH A . D 4 HOH 39 264 43 HOH HOH A . D 4 HOH 40 265 44 HOH HOH A . D 4 HOH 41 266 45 HOH HOH A . D 4 HOH 42 267 47 HOH HOH A . D 4 HOH 43 268 49 HOH HOH A . D 4 HOH 44 269 50 HOH HOH A . D 4 HOH 45 270 51 HOH HOH A . D 4 HOH 46 271 52 HOH HOH A . D 4 HOH 47 272 53 HOH HOH A . D 4 HOH 48 273 54 HOH HOH A . D 4 HOH 49 274 55 HOH HOH A . D 4 HOH 50 275 57 HOH HOH A . D 4 HOH 51 276 58 HOH HOH A . D 4 HOH 52 277 59 HOH HOH A . D 4 HOH 53 278 60 HOH HOH A . D 4 HOH 54 279 62 HOH HOH A . D 4 HOH 55 280 63 HOH HOH A . D 4 HOH 56 281 64 HOH HOH A . D 4 HOH 57 282 65 HOH HOH A . D 4 HOH 58 283 66 HOH HOH A . D 4 HOH 59 284 67 HOH HOH A . D 4 HOH 60 285 68 HOH HOH A . D 4 HOH 61 286 69 HOH HOH A . D 4 HOH 62 287 70 HOH HOH A . D 4 HOH 63 288 72 HOH HOH A . D 4 HOH 64 289 74 HOH HOH A . D 4 HOH 65 290 75 HOH HOH A . D 4 HOH 66 291 77 HOH HOH A . D 4 HOH 67 292 78 HOH HOH A . D 4 HOH 68 293 79 HOH HOH A . D 4 HOH 69 294 80 HOH HOH A . D 4 HOH 70 295 81 HOH HOH A . D 4 HOH 71 296 82 HOH HOH A . D 4 HOH 72 297 84 HOH HOH A . D 4 HOH 73 298 85 HOH HOH A . D 4 HOH 74 299 86 HOH HOH A . D 4 HOH 75 300 87 HOH HOH A . D 4 HOH 76 301 88 HOH HOH A . D 4 HOH 77 302 89 HOH HOH A . D 4 HOH 78 303 90 HOH HOH A . D 4 HOH 79 304 91 HOH HOH A . D 4 HOH 80 305 92 HOH HOH A . D 4 HOH 81 306 93 HOH HOH A . D 4 HOH 82 307 94 HOH HOH A . D 4 HOH 83 308 95 HOH HOH A . D 4 HOH 84 309 96 HOH HOH A . D 4 HOH 85 310 97 HOH HOH A . D 4 HOH 86 311 98 HOH HOH A . D 4 HOH 87 312 99 HOH HOH A . D 4 HOH 88 313 100 HOH HOH A . D 4 HOH 89 314 101 HOH HOH A . D 4 HOH 90 315 102 HOH HOH A . D 4 HOH 91 316 103 HOH HOH A . D 4 HOH 92 317 104 HOH HOH A . D 4 HOH 93 318 109 HOH HOH A . D 4 HOH 94 319 110 HOH HOH A . D 4 HOH 95 320 111 HOH HOH A . D 4 HOH 96 321 112 HOH HOH A . D 4 HOH 97 322 113 HOH HOH A . D 4 HOH 98 323 116 HOH HOH A . D 4 HOH 99 324 117 HOH HOH A . D 4 HOH 100 325 118 HOH HOH A . D 4 HOH 101 326 119 HOH HOH A . D 4 HOH 102 327 120 HOH HOH A . D 4 HOH 103 328 121 HOH HOH A . D 4 HOH 104 329 122 HOH HOH A . D 4 HOH 105 330 123 HOH HOH A . D 4 HOH 106 331 124 HOH HOH A . D 4 HOH 107 332 125 HOH HOH A . D 4 HOH 108 333 128 HOH HOH A . D 4 HOH 109 334 131 HOH HOH A . D 4 HOH 110 335 132 HOH HOH A . D 4 HOH 111 336 136 HOH HOH A . D 4 HOH 112 337 137 HOH HOH A . D 4 HOH 113 338 138 HOH HOH A . D 4 HOH 114 339 140 HOH HOH A . D 4 HOH 115 340 141 HOH HOH A . D 4 HOH 116 341 142 HOH HOH A . D 4 HOH 117 342 143 HOH HOH A . D 4 HOH 118 343 144 HOH HOH A . D 4 HOH 119 344 145 HOH HOH A . D 4 HOH 120 345 146 HOH HOH A . D 4 HOH 121 346 147 HOH HOH A . D 4 HOH 122 347 149 HOH HOH A . D 4 HOH 123 348 150 HOH HOH A . D 4 HOH 124 349 151 HOH HOH A . D 4 HOH 125 350 152 HOH HOH A . D 4 HOH 126 351 153 HOH HOH A . D 4 HOH 127 352 154 HOH HOH A . D 4 HOH 128 353 156 HOH HOH A . D 4 HOH 129 354 157 HOH HOH A . D 4 HOH 130 355 158 HOH HOH A . D 4 HOH 131 356 159 HOH HOH A . D 4 HOH 132 357 160 HOH HOH A . D 4 HOH 133 358 162 HOH HOH A . D 4 HOH 134 359 163 HOH HOH A . D 4 HOH 135 360 164 HOH HOH A . D 4 HOH 136 361 165 HOH HOH A . D 4 HOH 137 362 166 HOH HOH A . D 4 HOH 138 363 167 HOH HOH A . D 4 HOH 139 364 168 HOH HOH A . D 4 HOH 140 365 169 HOH HOH A . D 4 HOH 141 366 170 HOH HOH A . D 4 HOH 142 367 171 HOH HOH A . D 4 HOH 143 368 172 HOH HOH A . D 4 HOH 144 369 173 HOH HOH A . D 4 HOH 145 370 174 HOH HOH A . D 4 HOH 146 371 175 HOH HOH A . D 4 HOH 147 372 176 HOH HOH A . D 4 HOH 148 373 177 HOH HOH A . D 4 HOH 149 374 178 HOH HOH A . D 4 HOH 150 375 179 HOH HOH A . D 4 HOH 151 376 180 HOH HOH A . D 4 HOH 152 377 184 HOH HOH A . D 4 HOH 153 378 185 HOH HOH A . D 4 HOH 154 379 186 HOH HOH A . D 4 HOH 155 380 187 HOH HOH A . D 4 HOH 156 381 188 HOH HOH A . D 4 HOH 157 382 189 HOH HOH A . D 4 HOH 158 383 191 HOH HOH A . D 4 HOH 159 384 192 HOH HOH A . D 4 HOH 160 385 193 HOH HOH A . D 4 HOH 161 386 194 HOH HOH A . D 4 HOH 162 387 195 HOH HOH A . D 4 HOH 163 388 196 HOH HOH A . D 4 HOH 164 389 198 HOH HOH A . D 4 HOH 165 390 199 HOH HOH A . D 4 HOH 166 391 200 HOH HOH A . D 4 HOH 167 392 201 HOH HOH A . D 4 HOH 168 393 204 HOH HOH A . D 4 HOH 169 394 205 HOH HOH A . D 4 HOH 170 395 206 HOH HOH A . D 4 HOH 171 396 207 HOH HOH A . D 4 HOH 172 397 208 HOH HOH A . D 4 HOH 173 398 209 HOH HOH A . D 4 HOH 174 399 210 HOH HOH A . D 4 HOH 175 400 211 HOH HOH A . D 4 HOH 176 401 212 HOH HOH A . D 4 HOH 177 402 213 HOH HOH A . D 4 HOH 178 403 215 HOH HOH A . D 4 HOH 179 404 218 HOH HOH A . D 4 HOH 180 405 220 HOH HOH A . E 4 HOH 1 27 27 HOH HOH B . E 4 HOH 2 46 46 HOH HOH B . E 4 HOH 3 48 48 HOH HOH B . E 4 HOH 4 61 61 HOH HOH B . E 4 HOH 5 73 73 HOH HOH B . E 4 HOH 6 83 83 HOH HOH B . E 4 HOH 7 107 107 HOH HOH B . E 4 HOH 8 108 108 HOH HOH B . E 4 HOH 9 115 115 HOH HOH B . E 4 HOH 10 126 126 HOH HOH B . E 4 HOH 11 129 129 HOH HOH B . E 4 HOH 12 133 133 HOH HOH B . E 4 HOH 13 134 134 HOH HOH B . E 4 HOH 14 135 135 HOH HOH B . E 4 HOH 15 139 139 HOH HOH B . E 4 HOH 16 148 148 HOH HOH B . E 4 HOH 17 155 155 HOH HOH B . E 4 HOH 18 182 182 HOH HOH B . E 4 HOH 19 203 203 HOH HOH B . E 4 HOH 20 216 216 HOH HOH B . F 4 HOH 1 3 3 HOH HOH C . F 4 HOH 2 25 25 HOH HOH C . F 4 HOH 3 28 28 HOH HOH C . F 4 HOH 4 56 56 HOH HOH C . F 4 HOH 5 71 71 HOH HOH C . F 4 HOH 6 76 76 HOH HOH C . F 4 HOH 7 105 105 HOH HOH C . F 4 HOH 8 106 106 HOH HOH C . F 4 HOH 9 114 114 HOH HOH C . F 4 HOH 10 127 127 HOH HOH C . F 4 HOH 11 130 130 HOH HOH C . F 4 HOH 12 161 161 HOH HOH C . F 4 HOH 13 181 181 HOH HOH C . F 4 HOH 14 183 183 HOH HOH C . F 4 HOH 15 190 190 HOH HOH C . F 4 HOH 16 197 197 HOH HOH C . F 4 HOH 17 202 202 HOH HOH C . F 4 HOH 18 214 214 HOH HOH C . F 4 HOH 19 217 217 HOH HOH C . F 4 HOH 20 219 219 HOH HOH C . F 4 HOH 21 221 221 HOH HOH C . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 2750 ? 1 MORE -14 ? 1 'SSA (A^2)' 13490 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2010-09-22 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2023-09-06 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Source and taxonomy' 2 2 'Structure model' 'Version format compliance' 3 3 'Structure model' 'Data collection' 4 3 'Structure model' 'Database references' 5 3 'Structure model' 'Derived calculations' 6 3 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp_atom 2 3 'Structure model' chem_comp_bond 3 3 'Structure model' database_2 4 3 'Structure model' pdbx_initial_refinement_model 5 3 'Structure model' struct_conn 6 3 'Structure model' struct_ref_seq 7 3 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 4 3 'Structure model' '_struct_ref_seq.db_align_beg' 5 3 'Structure model' '_struct_ref_seq.db_align_end' 6 3 'Structure model' '_struct_ref_seq_dif.details' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] 'X-RAY DIFFRACTION' 1 ? refined 5.9146 -17.4539 -5.4059 0.2310 0.2373 0.2517 0.0078 -0.0188 0.0206 0.8391 1.0270 0.6366 0.0203 -0.2697 0.1119 -0.0094 0.0159 -0.0014 0.0067 0.0003 0.1286 0.0014 -0.0946 0.0050 'X-RAY DIFFRACTION' 2 ? ? ? ? ? 0.3768 0.3911 0.6024 0.0148 -0.0099 -0.0353 -0.0154 1.4998 1.4076 0.4843 -0.3583 0.5759 -0.0495 0.3564 -0.1146 0.5240 -0.2955 0.4365 0.2474 -0.4056 0.2629 'X-RAY DIFFRACTION' 3 ? ? ? ? ? 0.2368 0.4279 0.6200 0.0685 -0.1007 -0.0124 2.0901 0.1606 -0.1588 -1.0325 -0.3944 0.0880 0.1300 0.5848 0.0114 0.2573 -0.3122 0.7774 0.1849 -0.0720 0.1697 # _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_auth_asym_id ? _pdbx_refine_tls_group.beg_auth_seq_id ? _pdbx_refine_tls_group.beg_label_asym_id ? _pdbx_refine_tls_group.beg_label_seq_id ? _pdbx_refine_tls_group.end_auth_asym_id ? _pdbx_refine_tls_group.end_auth_seq_id ? _pdbx_refine_tls_group.end_label_asym_id ? _pdbx_refine_tls_group.end_label_seq_id ? _pdbx_refine_tls_group.selection ? _pdbx_refine_tls_group.selection_details 'CHAIN C' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal MAR345dtb 'data collection' . ? 1 PHASER phasing . ? 2 PHENIX refinement '(phenix.refine)' ? 3 HKL-2000 'data reduction' . ? 4 HKL-2000 'data scaling' . ? 5 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" B DT 1 ? ? "C1'" B DT 1 ? ? N1 B DT 1 ? ? 110.91 108.30 2.61 0.30 N 2 1 "C3'" B DG 3 ? ? "C2'" B DG 3 ? ? "C1'" B DG 3 ? ? 96.29 102.40 -6.11 0.80 N 3 1 "O4'" C DC 20 ? ? "C1'" C DC 20 ? ? N1 C DC 20 ? ? 111.80 108.30 3.50 0.30 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 THR A 54 ? ? 64.81 151.16 2 1 THR A 118 ? ? -92.78 -70.77 3 1 LYS A 158 ? ? 49.96 -120.51 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A LYS 6 ? CD ? A LYS 7 CD 2 1 Y 1 A LYS 6 ? CE ? A LYS 7 CE 3 1 Y 1 A LYS 6 ? NZ ? A LYS 7 NZ 4 1 Y 1 A GLU 10 ? CD ? A GLU 11 CD 5 1 Y 1 A GLU 10 ? OE1 ? A GLU 11 OE1 6 1 Y 1 A GLU 10 ? OE2 ? A GLU 11 OE2 7 1 Y 1 A GLU 19 ? CD ? A GLU 20 CD 8 1 Y 1 A GLU 19 ? OE1 ? A GLU 20 OE1 9 1 Y 1 A GLU 19 ? OE2 ? A GLU 20 OE2 10 1 Y 1 A LYS 20 ? NZ ? A LYS 21 NZ 11 1 Y 1 A GLU 22 ? CG ? A GLU 23 CG 12 1 Y 1 A GLU 22 ? CD ? A GLU 23 CD 13 1 Y 1 A GLU 22 ? OE1 ? A GLU 23 OE1 14 1 Y 1 A GLU 22 ? OE2 ? A GLU 23 OE2 15 1 Y 1 A GLU 73 ? OE2 ? A GLU 74 OE2 16 1 Y 1 A LYS 86 ? NZ ? A LYS 87 NZ 17 1 Y 0 A GLU 101 ? CD ? A GLU 102 CD 18 1 Y 1 A LYS 126 ? CG ? A LYS 127 CG 19 1 Y 1 A LYS 126 ? CD ? A LYS 127 CD 20 1 Y 1 A LYS 126 ? CE ? A LYS 127 CE 21 1 Y 1 A LYS 126 ? NZ ? A LYS 127 NZ 22 1 Y 1 A ASP 142 ? CG ? A ASP 143 CG 23 1 Y 1 A ASP 142 ? OD1 ? A ASP 143 OD1 24 1 Y 1 A ASP 142 ? OD2 ? A ASP 143 OD2 25 1 Y 1 A LYS 160 ? NZ ? A LYS 161 NZ 26 1 Y 1 A LYS 177 ? NZ ? A LYS 178 NZ 27 1 Y 1 A ASN 196 ? OD1 ? A ASN 197 OD1 28 1 Y 1 A ASP 198 ? OD2 ? A ASP 199 OD2 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 3DR "O5'" O N N 1 3DR P P N N 2 3DR OP1 O N N 3 3DR OP2 O N N 4 3DR OP3 O N N 5 3DR "C2'" C N N 6 3DR "C5'" C N N 7 3DR "C4'" C N R 8 3DR "O4'" O N N 9 3DR "C1'" C N N 10 3DR "C3'" C N S 11 3DR "O3'" O N N 12 3DR HOP2 H N N 13 3DR HOP3 H N N 14 3DR "H2'" H N N 15 3DR "H2''" H N N 16 3DR "H5'" H N N 17 3DR "H5''" H N N 18 3DR "H4'1" H N N 19 3DR "H1'1" H N N 20 3DR "H1'2" H N N 21 3DR "H3'" H N N 22 3DR "HO3'" H N N 23 ALA N N N N 24 ALA CA C N S 25 ALA C C N N 26 ALA O O N N 27 ALA CB C N N 28 ALA OXT O N N 29 ALA H H N N 30 ALA H2 H N N 31 ALA HA H N N 32 ALA HB1 H N N 33 ALA HB2 H N N 34 ALA HB3 H N N 35 ALA HXT H N N 36 ARG N N N N 37 ARG CA C N S 38 ARG C C N N 39 ARG O O N N 40 ARG CB C N N 41 ARG CG C N N 42 ARG CD C N N 43 ARG NE N N N 44 ARG CZ C N N 45 ARG NH1 N N N 46 ARG NH2 N N N 47 ARG OXT O N N 48 ARG H H N N 49 ARG H2 H N N 50 ARG HA H N N 51 ARG HB2 H N N 52 ARG HB3 H N N 53 ARG HG2 H N N 54 ARG HG3 H N N 55 ARG HD2 H N N 56 ARG HD3 H N N 57 ARG HE H N N 58 ARG HH11 H N N 59 ARG HH12 H N N 60 ARG HH21 H N N 61 ARG HH22 H N N 62 ARG HXT H N N 63 ASN N N N N 64 ASN CA C N S 65 ASN C C N N 66 ASN O O N N 67 ASN CB C N N 68 ASN CG C N N 69 ASN OD1 O N N 70 ASN ND2 N N N 71 ASN OXT O N N 72 ASN H H N N 73 ASN H2 H N N 74 ASN HA H N N 75 ASN HB2 H N N 76 ASN HB3 H N N 77 ASN HD21 H N N 78 ASN HD22 H N N 79 ASN HXT H N N 80 ASP N N N N 81 ASP CA C N S 82 ASP C C N N 83 ASP O O N N 84 ASP CB C N N 85 ASP CG C N N 86 ASP OD1 O N N 87 ASP OD2 O N N 88 ASP OXT O N N 89 ASP H H N N 90 ASP H2 H N N 91 ASP HA H N N 92 ASP HB2 H N N 93 ASP HB3 H N N 94 ASP HD2 H N N 95 ASP HXT H N N 96 DA OP3 O N N 97 DA P P N N 98 DA OP1 O N N 99 DA OP2 O N N 100 DA "O5'" O N N 101 DA "C5'" C N N 102 DA "C4'" C N R 103 DA "O4'" O N N 104 DA "C3'" C N S 105 DA "O3'" O N N 106 DA "C2'" C N N 107 DA "C1'" C N R 108 DA N9 N Y N 109 DA C8 C Y N 110 DA N7 N Y N 111 DA C5 C Y N 112 DA C6 C Y N 113 DA N6 N N N 114 DA N1 N Y N 115 DA C2 C Y N 116 DA N3 N Y N 117 DA C4 C Y N 118 DA HOP3 H N N 119 DA HOP2 H N N 120 DA "H5'" H N N 121 DA "H5''" H N N 122 DA "H4'" H N N 123 DA "H3'" H N N 124 DA "HO3'" H N N 125 DA "H2'" H N N 126 DA "H2''" H N N 127 DA "H1'" H N N 128 DA H8 H N N 129 DA H61 H N N 130 DA H62 H N N 131 DA H2 H N N 132 DC OP3 O N N 133 DC P P N N 134 DC OP1 O N N 135 DC OP2 O N N 136 DC "O5'" O N N 137 DC "C5'" C N N 138 DC "C4'" C N R 139 DC "O4'" O N N 140 DC "C3'" C N S 141 DC "O3'" O N N 142 DC "C2'" C N N 143 DC "C1'" C N R 144 DC N1 N N N 145 DC C2 C N N 146 DC O2 O N N 147 DC N3 N N N 148 DC C4 C N N 149 DC N4 N N N 150 DC C5 C N N 151 DC C6 C N N 152 DC HOP3 H N N 153 DC HOP2 H N N 154 DC "H5'" H N N 155 DC "H5''" H N N 156 DC "H4'" H N N 157 DC "H3'" H N N 158 DC "HO3'" H N N 159 DC "H2'" H N N 160 DC "H2''" H N N 161 DC "H1'" H N N 162 DC H41 H N N 163 DC H42 H N N 164 DC H5 H N N 165 DC H6 H N N 166 DG OP3 O N N 167 DG P P N N 168 DG OP1 O N N 169 DG OP2 O N N 170 DG "O5'" O N N 171 DG "C5'" C N N 172 DG "C4'" C N R 173 DG "O4'" O N N 174 DG "C3'" C N S 175 DG "O3'" O N N 176 DG "C2'" C N N 177 DG "C1'" C N R 178 DG N9 N Y N 179 DG C8 C Y N 180 DG N7 N Y N 181 DG C5 C Y N 182 DG C6 C N N 183 DG O6 O N N 184 DG N1 N N N 185 DG C2 C N N 186 DG N2 N N N 187 DG N3 N N N 188 DG C4 C Y N 189 DG HOP3 H N N 190 DG HOP2 H N N 191 DG "H5'" H N N 192 DG "H5''" H N N 193 DG "H4'" H N N 194 DG "H3'" H N N 195 DG "HO3'" H N N 196 DG "H2'" H N N 197 DG "H2''" H N N 198 DG "H1'" H N N 199 DG H8 H N N 200 DG H1 H N N 201 DG H21 H N N 202 DG H22 H N N 203 DT OP3 O N N 204 DT P P N N 205 DT OP1 O N N 206 DT OP2 O N N 207 DT "O5'" O N N 208 DT "C5'" C N N 209 DT "C4'" C N R 210 DT "O4'" O N N 211 DT "C3'" C N S 212 DT "O3'" O N N 213 DT "C2'" C N N 214 DT "C1'" C N R 215 DT N1 N N N 216 DT C2 C N N 217 DT O2 O N N 218 DT N3 N N N 219 DT C4 C N N 220 DT O4 O N N 221 DT C5 C N N 222 DT C7 C N N 223 DT C6 C N N 224 DT HOP3 H N N 225 DT HOP2 H N N 226 DT "H5'" H N N 227 DT "H5''" H N N 228 DT "H4'" H N N 229 DT "H3'" H N N 230 DT "HO3'" H N N 231 DT "H2'" H N N 232 DT "H2''" H N N 233 DT "H1'" H N N 234 DT H3 H N N 235 DT H71 H N N 236 DT H72 H N N 237 DT H73 H N N 238 DT H6 H N N 239 GLN N N N N 240 GLN CA C N S 241 GLN C C N N 242 GLN O O N N 243 GLN CB C N N 244 GLN CG C N N 245 GLN CD C N N 246 GLN OE1 O N N 247 GLN NE2 N N N 248 GLN OXT O N N 249 GLN H H N N 250 GLN H2 H N N 251 GLN HA H N N 252 GLN HB2 H N N 253 GLN HB3 H N N 254 GLN HG2 H N N 255 GLN HG3 H N N 256 GLN HE21 H N N 257 GLN HE22 H N N 258 GLN HXT H N N 259 GLU N N N N 260 GLU CA C N S 261 GLU C C N N 262 GLU O O N N 263 GLU CB C N N 264 GLU CG C N N 265 GLU CD C N N 266 GLU OE1 O N N 267 GLU OE2 O N N 268 GLU OXT O N N 269 GLU H H N N 270 GLU H2 H N N 271 GLU HA H N N 272 GLU HB2 H N N 273 GLU HB3 H N N 274 GLU HG2 H N N 275 GLU HG3 H N N 276 GLU HE2 H N N 277 GLU HXT H N N 278 GLY N N N N 279 GLY CA C N N 280 GLY C C N N 281 GLY O O N N 282 GLY OXT O N N 283 GLY H H N N 284 GLY H2 H N N 285 GLY HA2 H N N 286 GLY HA3 H N N 287 GLY HXT H N N 288 HIS N N N N 289 HIS CA C N S 290 HIS C C N N 291 HIS O O N N 292 HIS CB C N N 293 HIS CG C Y N 294 HIS ND1 N Y N 295 HIS CD2 C Y N 296 HIS CE1 C Y N 297 HIS NE2 N Y N 298 HIS OXT O N N 299 HIS H H N N 300 HIS H2 H N N 301 HIS HA H N N 302 HIS HB2 H N N 303 HIS HB3 H N N 304 HIS HD1 H N N 305 HIS HD2 H N N 306 HIS HE1 H N N 307 HIS HE2 H N N 308 HIS HXT H N N 309 HOH O O N N 310 HOH H1 H N N 311 HOH H2 H N N 312 ILE N N N N 313 ILE CA C N S 314 ILE C C N N 315 ILE O O N N 316 ILE CB C N S 317 ILE CG1 C N N 318 ILE CG2 C N N 319 ILE CD1 C N N 320 ILE OXT O N N 321 ILE H H N N 322 ILE H2 H N N 323 ILE HA H N N 324 ILE HB H N N 325 ILE HG12 H N N 326 ILE HG13 H N N 327 ILE HG21 H N N 328 ILE HG22 H N N 329 ILE HG23 H N N 330 ILE HD11 H N N 331 ILE HD12 H N N 332 ILE HD13 H N N 333 ILE HXT H N N 334 LEU N N N N 335 LEU CA C N S 336 LEU C C N N 337 LEU O O N N 338 LEU CB C N N 339 LEU CG C N N 340 LEU CD1 C N N 341 LEU CD2 C N N 342 LEU OXT O N N 343 LEU H H N N 344 LEU H2 H N N 345 LEU HA H N N 346 LEU HB2 H N N 347 LEU HB3 H N N 348 LEU HG H N N 349 LEU HD11 H N N 350 LEU HD12 H N N 351 LEU HD13 H N N 352 LEU HD21 H N N 353 LEU HD22 H N N 354 LEU HD23 H N N 355 LEU HXT H N N 356 LYS N N N N 357 LYS CA C N S 358 LYS C C N N 359 LYS O O N N 360 LYS CB C N N 361 LYS CG C N N 362 LYS CD C N N 363 LYS CE C N N 364 LYS NZ N N N 365 LYS OXT O N N 366 LYS H H N N 367 LYS H2 H N N 368 LYS HA H N N 369 LYS HB2 H N N 370 LYS HB3 H N N 371 LYS HG2 H N N 372 LYS HG3 H N N 373 LYS HD2 H N N 374 LYS HD3 H N N 375 LYS HE2 H N N 376 LYS HE3 H N N 377 LYS HZ1 H N N 378 LYS HZ2 H N N 379 LYS HZ3 H N N 380 LYS HXT H N N 381 MET N N N N 382 MET CA C N S 383 MET C C N N 384 MET O O N N 385 MET CB C N N 386 MET CG C N N 387 MET SD S N N 388 MET CE C N N 389 MET OXT O N N 390 MET H H N N 391 MET H2 H N N 392 MET HA H N N 393 MET HB2 H N N 394 MET HB3 H N N 395 MET HG2 H N N 396 MET HG3 H N N 397 MET HE1 H N N 398 MET HE2 H N N 399 MET HE3 H N N 400 MET HXT H N N 401 PHE N N N N 402 PHE CA C N S 403 PHE C C N N 404 PHE O O N N 405 PHE CB C N N 406 PHE CG C Y N 407 PHE CD1 C Y N 408 PHE CD2 C Y N 409 PHE CE1 C Y N 410 PHE CE2 C Y N 411 PHE CZ C Y N 412 PHE OXT O N N 413 PHE H H N N 414 PHE H2 H N N 415 PHE HA H N N 416 PHE HB2 H N N 417 PHE HB3 H N N 418 PHE HD1 H N N 419 PHE HD2 H N N 420 PHE HE1 H N N 421 PHE HE2 H N N 422 PHE HZ H N N 423 PHE HXT H N N 424 PRO N N N N 425 PRO CA C N S 426 PRO C C N N 427 PRO O O N N 428 PRO CB C N N 429 PRO CG C N N 430 PRO CD C N N 431 PRO OXT O N N 432 PRO H H N N 433 PRO HA H N N 434 PRO HB2 H N N 435 PRO HB3 H N N 436 PRO HG2 H N N 437 PRO HG3 H N N 438 PRO HD2 H N N 439 PRO HD3 H N N 440 PRO HXT H N N 441 SER N N N N 442 SER CA C N S 443 SER C C N N 444 SER O O N N 445 SER CB C N N 446 SER OG O N N 447 SER OXT O N N 448 SER H H N N 449 SER H2 H N N 450 SER HA H N N 451 SER HB2 H N N 452 SER HB3 H N N 453 SER HG H N N 454 SER HXT H N N 455 THR N N N N 456 THR CA C N S 457 THR C C N N 458 THR O O N N 459 THR CB C N R 460 THR OG1 O N N 461 THR CG2 C N N 462 THR OXT O N N 463 THR H H N N 464 THR H2 H N N 465 THR HA H N N 466 THR HB H N N 467 THR HG1 H N N 468 THR HG21 H N N 469 THR HG22 H N N 470 THR HG23 H N N 471 THR HXT H N N 472 TRP N N N N 473 TRP CA C N S 474 TRP C C N N 475 TRP O O N N 476 TRP CB C N N 477 TRP CG C Y N 478 TRP CD1 C Y N 479 TRP CD2 C Y N 480 TRP NE1 N Y N 481 TRP CE2 C Y N 482 TRP CE3 C Y N 483 TRP CZ2 C Y N 484 TRP CZ3 C Y N 485 TRP CH2 C Y N 486 TRP OXT O N N 487 TRP H H N N 488 TRP H2 H N N 489 TRP HA H N N 490 TRP HB2 H N N 491 TRP HB3 H N N 492 TRP HD1 H N N 493 TRP HE1 H N N 494 TRP HE3 H N N 495 TRP HZ2 H N N 496 TRP HZ3 H N N 497 TRP HH2 H N N 498 TRP HXT H N N 499 TYR N N N N 500 TYR CA C N S 501 TYR C C N N 502 TYR O O N N 503 TYR CB C N N 504 TYR CG C Y N 505 TYR CD1 C Y N 506 TYR CD2 C Y N 507 TYR CE1 C Y N 508 TYR CE2 C Y N 509 TYR CZ C Y N 510 TYR OH O N N 511 TYR OXT O N N 512 TYR H H N N 513 TYR H2 H N N 514 TYR HA H N N 515 TYR HB2 H N N 516 TYR HB3 H N N 517 TYR HD1 H N N 518 TYR HD2 H N N 519 TYR HE1 H N N 520 TYR HE2 H N N 521 TYR HH H N N 522 TYR HXT H N N 523 VAL N N N N 524 VAL CA C N S 525 VAL C C N N 526 VAL O O N N 527 VAL CB C N N 528 VAL CG1 C N N 529 VAL CG2 C N N 530 VAL OXT O N N 531 VAL H H N N 532 VAL H2 H N N 533 VAL HA H N N 534 VAL HB H N N 535 VAL HG11 H N N 536 VAL HG12 H N N 537 VAL HG13 H N N 538 VAL HG21 H N N 539 VAL HG22 H N N 540 VAL HG23 H N N 541 VAL HXT H N N 542 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 3DR "O5'" P sing N N 1 3DR "O5'" "C5'" sing N N 2 3DR P OP1 doub N N 3 3DR P OP2 sing N N 4 3DR P OP3 sing N N 5 3DR OP2 HOP2 sing N N 6 3DR OP3 HOP3 sing N N 7 3DR "C2'" "C1'" sing N N 8 3DR "C2'" "C3'" sing N N 9 3DR "C2'" "H2'" sing N N 10 3DR "C2'" "H2''" sing N N 11 3DR "C5'" "C4'" sing N N 12 3DR "C5'" "H5'" sing N N 13 3DR "C5'" "H5''" sing N N 14 3DR "C4'" "O4'" sing N N 15 3DR "C4'" "C3'" sing N N 16 3DR "C4'" "H4'1" sing N N 17 3DR "O4'" "C1'" sing N N 18 3DR "C1'" "H1'1" sing N N 19 3DR "C1'" "H1'2" sing N N 20 3DR "C3'" "O3'" sing N N 21 3DR "C3'" "H3'" sing N N 22 3DR "O3'" "HO3'" sing N N 23 ALA N CA sing N N 24 ALA N H sing N N 25 ALA N H2 sing N N 26 ALA CA C sing N N 27 ALA CA CB sing N N 28 ALA CA HA sing N N 29 ALA C O doub N N 30 ALA C OXT sing N N 31 ALA CB HB1 sing N N 32 ALA CB HB2 sing N N 33 ALA CB HB3 sing N N 34 ALA OXT HXT sing N N 35 ARG N CA sing N N 36 ARG N H sing N N 37 ARG N H2 sing N N 38 ARG CA C sing N N 39 ARG CA CB sing N N 40 ARG CA HA sing N N 41 ARG C O doub N N 42 ARG C OXT sing N N 43 ARG CB CG sing N N 44 ARG CB HB2 sing N N 45 ARG CB HB3 sing N N 46 ARG CG CD sing N N 47 ARG CG HG2 sing N N 48 ARG CG HG3 sing N N 49 ARG CD NE sing N N 50 ARG CD HD2 sing N N 51 ARG CD HD3 sing N N 52 ARG NE CZ sing N N 53 ARG NE HE sing N N 54 ARG CZ NH1 sing N N 55 ARG CZ NH2 doub N N 56 ARG NH1 HH11 sing N N 57 ARG NH1 HH12 sing N N 58 ARG NH2 HH21 sing N N 59 ARG NH2 HH22 sing N N 60 ARG OXT HXT sing N N 61 ASN N CA sing N N 62 ASN N H sing N N 63 ASN N H2 sing N N 64 ASN CA C sing N N 65 ASN CA CB sing N N 66 ASN CA HA sing N N 67 ASN C O doub N N 68 ASN C OXT sing N N 69 ASN CB CG sing N N 70 ASN CB HB2 sing N N 71 ASN CB HB3 sing N N 72 ASN CG OD1 doub N N 73 ASN CG ND2 sing N N 74 ASN ND2 HD21 sing N N 75 ASN ND2 HD22 sing N N 76 ASN OXT HXT sing N N 77 ASP N CA sing N N 78 ASP N H sing N N 79 ASP N H2 sing N N 80 ASP CA C sing N N 81 ASP CA CB sing N N 82 ASP CA HA sing N N 83 ASP C O doub N N 84 ASP C OXT sing N N 85 ASP CB CG sing N N 86 ASP CB HB2 sing N N 87 ASP CB HB3 sing N N 88 ASP CG OD1 doub N N 89 ASP CG OD2 sing N N 90 ASP OD2 HD2 sing N N 91 ASP OXT HXT sing N N 92 DA OP3 P sing N N 93 DA OP3 HOP3 sing N N 94 DA P OP1 doub N N 95 DA P OP2 sing N N 96 DA P "O5'" sing N N 97 DA OP2 HOP2 sing N N 98 DA "O5'" "C5'" sing N N 99 DA "C5'" "C4'" sing N N 100 DA "C5'" "H5'" sing N N 101 DA "C5'" "H5''" sing N N 102 DA "C4'" "O4'" sing N N 103 DA "C4'" "C3'" sing N N 104 DA "C4'" "H4'" sing N N 105 DA "O4'" "C1'" sing N N 106 DA "C3'" "O3'" sing N N 107 DA "C3'" "C2'" sing N N 108 DA "C3'" "H3'" sing N N 109 DA "O3'" "HO3'" sing N N 110 DA "C2'" "C1'" sing N N 111 DA "C2'" "H2'" sing N N 112 DA "C2'" "H2''" sing N N 113 DA "C1'" N9 sing N N 114 DA "C1'" "H1'" sing N N 115 DA N9 C8 sing Y N 116 DA N9 C4 sing Y N 117 DA C8 N7 doub Y N 118 DA C8 H8 sing N N 119 DA N7 C5 sing Y N 120 DA C5 C6 sing Y N 121 DA C5 C4 doub Y N 122 DA C6 N6 sing N N 123 DA C6 N1 doub Y N 124 DA N6 H61 sing N N 125 DA N6 H62 sing N N 126 DA N1 C2 sing Y N 127 DA C2 N3 doub Y N 128 DA C2 H2 sing N N 129 DA N3 C4 sing Y N 130 DC OP3 P sing N N 131 DC OP3 HOP3 sing N N 132 DC P OP1 doub N N 133 DC P OP2 sing N N 134 DC P "O5'" sing N N 135 DC OP2 HOP2 sing N N 136 DC "O5'" "C5'" sing N N 137 DC "C5'" "C4'" sing N N 138 DC "C5'" "H5'" sing N N 139 DC "C5'" "H5''" sing N N 140 DC "C4'" "O4'" sing N N 141 DC "C4'" "C3'" sing N N 142 DC "C4'" "H4'" sing N N 143 DC "O4'" "C1'" sing N N 144 DC "C3'" "O3'" sing N N 145 DC "C3'" "C2'" sing N N 146 DC "C3'" "H3'" sing N N 147 DC "O3'" "HO3'" sing N N 148 DC "C2'" "C1'" sing N N 149 DC "C2'" "H2'" sing N N 150 DC "C2'" "H2''" sing N N 151 DC "C1'" N1 sing N N 152 DC "C1'" "H1'" sing N N 153 DC N1 C2 sing N N 154 DC N1 C6 sing N N 155 DC C2 O2 doub N N 156 DC C2 N3 sing N N 157 DC N3 C4 doub N N 158 DC C4 N4 sing N N 159 DC C4 C5 sing N N 160 DC N4 H41 sing N N 161 DC N4 H42 sing N N 162 DC C5 C6 doub N N 163 DC C5 H5 sing N N 164 DC C6 H6 sing N N 165 DG OP3 P sing N N 166 DG OP3 HOP3 sing N N 167 DG P OP1 doub N N 168 DG P OP2 sing N N 169 DG P "O5'" sing N N 170 DG OP2 HOP2 sing N N 171 DG "O5'" "C5'" sing N N 172 DG "C5'" "C4'" sing N N 173 DG "C5'" "H5'" sing N N 174 DG "C5'" "H5''" sing N N 175 DG "C4'" "O4'" sing N N 176 DG "C4'" "C3'" sing N N 177 DG "C4'" "H4'" sing N N 178 DG "O4'" "C1'" sing N N 179 DG "C3'" "O3'" sing N N 180 DG "C3'" "C2'" sing N N 181 DG "C3'" "H3'" sing N N 182 DG "O3'" "HO3'" sing N N 183 DG "C2'" "C1'" sing N N 184 DG "C2'" "H2'" sing N N 185 DG "C2'" "H2''" sing N N 186 DG "C1'" N9 sing N N 187 DG "C1'" "H1'" sing N N 188 DG N9 C8 sing Y N 189 DG N9 C4 sing Y N 190 DG C8 N7 doub Y N 191 DG C8 H8 sing N N 192 DG N7 C5 sing Y N 193 DG C5 C6 sing N N 194 DG C5 C4 doub Y N 195 DG C6 O6 doub N N 196 DG C6 N1 sing N N 197 DG N1 C2 sing N N 198 DG N1 H1 sing N N 199 DG C2 N2 sing N N 200 DG C2 N3 doub N N 201 DG N2 H21 sing N N 202 DG N2 H22 sing N N 203 DG N3 C4 sing N N 204 DT OP3 P sing N N 205 DT OP3 HOP3 sing N N 206 DT P OP1 doub N N 207 DT P OP2 sing N N 208 DT P "O5'" sing N N 209 DT OP2 HOP2 sing N N 210 DT "O5'" "C5'" sing N N 211 DT "C5'" "C4'" sing N N 212 DT "C5'" "H5'" sing N N 213 DT "C5'" "H5''" sing N N 214 DT "C4'" "O4'" sing N N 215 DT "C4'" "C3'" sing N N 216 DT "C4'" "H4'" sing N N 217 DT "O4'" "C1'" sing N N 218 DT "C3'" "O3'" sing N N 219 DT "C3'" "C2'" sing N N 220 DT "C3'" "H3'" sing N N 221 DT "O3'" "HO3'" sing N N 222 DT "C2'" "C1'" sing N N 223 DT "C2'" "H2'" sing N N 224 DT "C2'" "H2''" sing N N 225 DT "C1'" N1 sing N N 226 DT "C1'" "H1'" sing N N 227 DT N1 C2 sing N N 228 DT N1 C6 sing N N 229 DT C2 O2 doub N N 230 DT C2 N3 sing N N 231 DT N3 C4 sing N N 232 DT N3 H3 sing N N 233 DT C4 O4 doub N N 234 DT C4 C5 sing N N 235 DT C5 C7 sing N N 236 DT C5 C6 doub N N 237 DT C7 H71 sing N N 238 DT C7 H72 sing N N 239 DT C7 H73 sing N N 240 DT C6 H6 sing N N 241 GLN N CA sing N N 242 GLN N H sing N N 243 GLN N H2 sing N N 244 GLN CA C sing N N 245 GLN CA CB sing N N 246 GLN CA HA sing N N 247 GLN C O doub N N 248 GLN C OXT sing N N 249 GLN CB CG sing N N 250 GLN CB HB2 sing N N 251 GLN CB HB3 sing N N 252 GLN CG CD sing N N 253 GLN CG HG2 sing N N 254 GLN CG HG3 sing N N 255 GLN CD OE1 doub N N 256 GLN CD NE2 sing N N 257 GLN NE2 HE21 sing N N 258 GLN NE2 HE22 sing N N 259 GLN OXT HXT sing N N 260 GLU N CA sing N N 261 GLU N H sing N N 262 GLU N H2 sing N N 263 GLU CA C sing N N 264 GLU CA CB sing N N 265 GLU CA HA sing N N 266 GLU C O doub N N 267 GLU C OXT sing N N 268 GLU CB CG sing N N 269 GLU CB HB2 sing N N 270 GLU CB HB3 sing N N 271 GLU CG CD sing N N 272 GLU CG HG2 sing N N 273 GLU CG HG3 sing N N 274 GLU CD OE1 doub N N 275 GLU CD OE2 sing N N 276 GLU OE2 HE2 sing N N 277 GLU OXT HXT sing N N 278 GLY N CA sing N N 279 GLY N H sing N N 280 GLY N H2 sing N N 281 GLY CA C sing N N 282 GLY CA HA2 sing N N 283 GLY CA HA3 sing N N 284 GLY C O doub N N 285 GLY C OXT sing N N 286 GLY OXT HXT sing N N 287 HIS N CA sing N N 288 HIS N H sing N N 289 HIS N H2 sing N N 290 HIS CA C sing N N 291 HIS CA CB sing N N 292 HIS CA HA sing N N 293 HIS C O doub N N 294 HIS C OXT sing N N 295 HIS CB CG sing N N 296 HIS CB HB2 sing N N 297 HIS CB HB3 sing N N 298 HIS CG ND1 sing Y N 299 HIS CG CD2 doub Y N 300 HIS ND1 CE1 doub Y N 301 HIS ND1 HD1 sing N N 302 HIS CD2 NE2 sing Y N 303 HIS CD2 HD2 sing N N 304 HIS CE1 NE2 sing Y N 305 HIS CE1 HE1 sing N N 306 HIS NE2 HE2 sing N N 307 HIS OXT HXT sing N N 308 HOH O H1 sing N N 309 HOH O H2 sing N N 310 ILE N CA sing N N 311 ILE N H sing N N 312 ILE N H2 sing N N 313 ILE CA C sing N N 314 ILE CA CB sing N N 315 ILE CA HA sing N N 316 ILE C O doub N N 317 ILE C OXT sing N N 318 ILE CB CG1 sing N N 319 ILE CB CG2 sing N N 320 ILE CB HB sing N N 321 ILE CG1 CD1 sing N N 322 ILE CG1 HG12 sing N N 323 ILE CG1 HG13 sing N N 324 ILE CG2 HG21 sing N N 325 ILE CG2 HG22 sing N N 326 ILE CG2 HG23 sing N N 327 ILE CD1 HD11 sing N N 328 ILE CD1 HD12 sing N N 329 ILE CD1 HD13 sing N N 330 ILE OXT HXT sing N N 331 LEU N CA sing N N 332 LEU N H sing N N 333 LEU N H2 sing N N 334 LEU CA C sing N N 335 LEU CA CB sing N N 336 LEU CA HA sing N N 337 LEU C O doub N N 338 LEU C OXT sing N N 339 LEU CB CG sing N N 340 LEU CB HB2 sing N N 341 LEU CB HB3 sing N N 342 LEU CG CD1 sing N N 343 LEU CG CD2 sing N N 344 LEU CG HG sing N N 345 LEU CD1 HD11 sing N N 346 LEU CD1 HD12 sing N N 347 LEU CD1 HD13 sing N N 348 LEU CD2 HD21 sing N N 349 LEU CD2 HD22 sing N N 350 LEU CD2 HD23 sing N N 351 LEU OXT HXT sing N N 352 LYS N CA sing N N 353 LYS N H sing N N 354 LYS N H2 sing N N 355 LYS CA C sing N N 356 LYS CA CB sing N N 357 LYS CA HA sing N N 358 LYS C O doub N N 359 LYS C OXT sing N N 360 LYS CB CG sing N N 361 LYS CB HB2 sing N N 362 LYS CB HB3 sing N N 363 LYS CG CD sing N N 364 LYS CG HG2 sing N N 365 LYS CG HG3 sing N N 366 LYS CD CE sing N N 367 LYS CD HD2 sing N N 368 LYS CD HD3 sing N N 369 LYS CE NZ sing N N 370 LYS CE HE2 sing N N 371 LYS CE HE3 sing N N 372 LYS NZ HZ1 sing N N 373 LYS NZ HZ2 sing N N 374 LYS NZ HZ3 sing N N 375 LYS OXT HXT sing N N 376 MET N CA sing N N 377 MET N H sing N N 378 MET N H2 sing N N 379 MET CA C sing N N 380 MET CA CB sing N N 381 MET CA HA sing N N 382 MET C O doub N N 383 MET C OXT sing N N 384 MET CB CG sing N N 385 MET CB HB2 sing N N 386 MET CB HB3 sing N N 387 MET CG SD sing N N 388 MET CG HG2 sing N N 389 MET CG HG3 sing N N 390 MET SD CE sing N N 391 MET CE HE1 sing N N 392 MET CE HE2 sing N N 393 MET CE HE3 sing N N 394 MET OXT HXT sing N N 395 PHE N CA sing N N 396 PHE N H sing N N 397 PHE N H2 sing N N 398 PHE CA C sing N N 399 PHE CA CB sing N N 400 PHE CA HA sing N N 401 PHE C O doub N N 402 PHE C OXT sing N N 403 PHE CB CG sing N N 404 PHE CB HB2 sing N N 405 PHE CB HB3 sing N N 406 PHE CG CD1 doub Y N 407 PHE CG CD2 sing Y N 408 PHE CD1 CE1 sing Y N 409 PHE CD1 HD1 sing N N 410 PHE CD2 CE2 doub Y N 411 PHE CD2 HD2 sing N N 412 PHE CE1 CZ doub Y N 413 PHE CE1 HE1 sing N N 414 PHE CE2 CZ sing Y N 415 PHE CE2 HE2 sing N N 416 PHE CZ HZ sing N N 417 PHE OXT HXT sing N N 418 PRO N CA sing N N 419 PRO N CD sing N N 420 PRO N H sing N N 421 PRO CA C sing N N 422 PRO CA CB sing N N 423 PRO CA HA sing N N 424 PRO C O doub N N 425 PRO C OXT sing N N 426 PRO CB CG sing N N 427 PRO CB HB2 sing N N 428 PRO CB HB3 sing N N 429 PRO CG CD sing N N 430 PRO CG HG2 sing N N 431 PRO CG HG3 sing N N 432 PRO CD HD2 sing N N 433 PRO CD HD3 sing N N 434 PRO OXT HXT sing N N 435 SER N CA sing N N 436 SER N H sing N N 437 SER N H2 sing N N 438 SER CA C sing N N 439 SER CA CB sing N N 440 SER CA HA sing N N 441 SER C O doub N N 442 SER C OXT sing N N 443 SER CB OG sing N N 444 SER CB HB2 sing N N 445 SER CB HB3 sing N N 446 SER OG HG sing N N 447 SER OXT HXT sing N N 448 THR N CA sing N N 449 THR N H sing N N 450 THR N H2 sing N N 451 THR CA C sing N N 452 THR CA CB sing N N 453 THR CA HA sing N N 454 THR C O doub N N 455 THR C OXT sing N N 456 THR CB OG1 sing N N 457 THR CB CG2 sing N N 458 THR CB HB sing N N 459 THR OG1 HG1 sing N N 460 THR CG2 HG21 sing N N 461 THR CG2 HG22 sing N N 462 THR CG2 HG23 sing N N 463 THR OXT HXT sing N N 464 TRP N CA sing N N 465 TRP N H sing N N 466 TRP N H2 sing N N 467 TRP CA C sing N N 468 TRP CA CB sing N N 469 TRP CA HA sing N N 470 TRP C O doub N N 471 TRP C OXT sing N N 472 TRP CB CG sing N N 473 TRP CB HB2 sing N N 474 TRP CB HB3 sing N N 475 TRP CG CD1 doub Y N 476 TRP CG CD2 sing Y N 477 TRP CD1 NE1 sing Y N 478 TRP CD1 HD1 sing N N 479 TRP CD2 CE2 doub Y N 480 TRP CD2 CE3 sing Y N 481 TRP NE1 CE2 sing Y N 482 TRP NE1 HE1 sing N N 483 TRP CE2 CZ2 sing Y N 484 TRP CE3 CZ3 doub Y N 485 TRP CE3 HE3 sing N N 486 TRP CZ2 CH2 doub Y N 487 TRP CZ2 HZ2 sing N N 488 TRP CZ3 CH2 sing Y N 489 TRP CZ3 HZ3 sing N N 490 TRP CH2 HH2 sing N N 491 TRP OXT HXT sing N N 492 TYR N CA sing N N 493 TYR N H sing N N 494 TYR N H2 sing N N 495 TYR CA C sing N N 496 TYR CA CB sing N N 497 TYR CA HA sing N N 498 TYR C O doub N N 499 TYR C OXT sing N N 500 TYR CB CG sing N N 501 TYR CB HB2 sing N N 502 TYR CB HB3 sing N N 503 TYR CG CD1 doub Y N 504 TYR CG CD2 sing Y N 505 TYR CD1 CE1 sing Y N 506 TYR CD1 HD1 sing N N 507 TYR CD2 CE2 doub Y N 508 TYR CD2 HD2 sing N N 509 TYR CE1 CZ doub Y N 510 TYR CE1 HE1 sing N N 511 TYR CE2 CZ sing Y N 512 TYR CE2 HE2 sing N N 513 TYR CZ OH sing N N 514 TYR OH HH sing N N 515 TYR OXT HXT sing N N 516 VAL N CA sing N N 517 VAL N H sing N N 518 VAL N H2 sing N N 519 VAL CA C sing N N 520 VAL CA CB sing N N 521 VAL CA HA sing N N 522 VAL C O doub N N 523 VAL C OXT sing N N 524 VAL CB CG1 sing N N 525 VAL CB CG2 sing N N 526 VAL CB HB sing N N 527 VAL CG1 HG11 sing N N 528 VAL CG1 HG12 sing N N 529 VAL CG1 HG13 sing N N 530 VAL CG2 HG21 sing N N 531 VAL CG2 HG22 sing N N 532 VAL CG2 HG23 sing N N 533 VAL OXT HXT sing N N 534 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 3JY1 'double helix' 3JY1 'b-form double helix' 3JY1 'mismatched base pair' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 B DG 2 1_555 C DC 10 1_555 -0.161 -0.199 -0.142 -5.069 8.296 -0.983 1 B_DG2:DC20_C B 2 ? C 20 ? 19 1 1 B DG 3 1_555 C DC 9 1_555 -0.232 -0.230 0.127 7.676 -3.903 -0.768 2 B_DG3:DC19_C B 3 ? C 19 ? 19 1 1 B DG 4 1_555 C DC 8 1_555 -0.216 -0.168 0.281 -3.070 -21.238 -2.441 3 B_DG4:DC18_C B 4 ? C 18 ? 19 1 1 B DG 6 1_555 C DC 6 1_555 -0.109 -0.193 0.338 12.486 -11.022 -3.126 4 B_DG6:DC16_C B 6 ? C 16 ? 19 1 1 B DG 7 1_555 C DC 5 1_555 -0.327 -0.192 0.247 6.485 -11.699 -2.224 5 B_DG7:DC15_C B 7 ? C 15 ? 19 1 1 B DC 8 1_555 C DG 4 1_555 0.376 -0.129 0.072 1.714 -5.945 0.256 6 B_DC8:DG14_C B 8 ? C 14 ? 19 1 1 B DT 9 1_555 C DA 3 1_555 0.463 -0.338 0.080 -3.713 -8.566 0.586 7 B_DT9:DA13_C B 9 ? C 13 ? 20 1 1 B DT 10 1_555 C DA 2 1_555 0.703 -0.399 -0.097 12.074 -9.148 0.202 8 B_DT10:DA12_C B 10 ? C 12 ? 20 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 B DG 2 1_555 C DC 10 1_555 B DG 3 1_555 C DC 9 1_555 -0.642 0.037 3.170 -5.520 5.149 25.852 -1.229 -0.024 3.184 11.208 12.016 26.913 1 BB_DG2DG3:DC19DC20_CC B 2 ? C 20 ? B 3 ? C 19 ? 1 B DG 3 1_555 C DC 9 1_555 B DG 4 1_555 C DC 8 1_555 -1.129 -0.311 3.534 -7.277 6.477 39.415 -1.247 0.732 3.586 9.430 10.593 40.555 2 BB_DG3DG4:DC18DC19_CC B 3 ? C 19 ? B 4 ? C 18 ? 1 B DG 4 1_555 C DC 8 1_555 B DG 6 1_555 C DC 6 1_555 0.078 4.941 3.185 4.158 -7.341 62.126 5.050 0.093 2.645 -7.078 -4.009 62.639 3 BB_DG4DG6:DC16DC18_CC B 4 ? C 18 ? B 6 ? C 16 ? 1 B DG 6 1_555 C DC 6 1_555 B DG 7 1_555 C DC 5 1_555 0.559 -0.147 3.403 0.181 7.239 31.383 -1.606 -0.974 3.291 13.164 -0.329 32.187 4 BB_DG6DG7:DC15DC16_CC B 6 ? C 16 ? B 7 ? C 15 ? 1 B DG 7 1_555 C DC 5 1_555 B DC 8 1_555 C DG 4 1_555 0.380 -0.463 3.338 2.098 5.724 36.894 -1.487 -0.313 3.248 8.969 -3.288 37.377 5 BB_DG7DC8:DG14DC15_CC B 7 ? C 15 ? B 8 ? C 14 ? 1 B DC 8 1_555 C DG 4 1_555 B DT 9 1_555 C DA 3 1_555 0.391 -0.198 3.579 3.803 2.344 37.913 -0.628 -0.070 3.582 3.592 -5.829 38.166 6 BB_DC8DT9:DA13DG14_CC B 8 ? C 14 ? B 9 ? C 13 ? 1 B DT 9 1_555 C DA 3 1_555 B DT 10 1_555 C DA 2 1_555 -0.210 0.233 3.050 2.204 2.399 30.624 0.001 0.797 3.037 4.526 -4.158 30.793 7 BB_DT9DT10:DA12DA13_CC B 9 ? C 13 ? B 10 ? C 12 ? # _pdbx_entity_nonpoly.entity_id 4 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 3BVS _pdbx_initial_refinement_model.details 'PDB 3BVS' #