HEADER HYDROLASE 21-SEP-09 3JYH TITLE HUMAN DIPEPTIDYL PEPTIDASE DPP7 COMPND MOL_ID: 1; COMPND 2 MOLECULE: DIPEPTIDYL-PEPTIDASE 2; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: PEPTIDASE DOMAIN: UNP RESIDUES 28-492; COMPND 5 SYNONYM: DIPEPTIDYL-PEPTIDASE II, DPP II, DIPEPTIDYL AMINOPEPTIDASE COMPND 6 II, QUIESCENT CELL PROLINE DIPEPTIDASE, DIPEPTIDYL PEPTIDASE 7; COMPND 7 EC: 3.4.14.2; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: DPP2, DPP7, QPP; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: SF9; SOURCE 9 EXPRESSION_SYSTEM_CELL_LINE: SF9 INSECT CELLS; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_VECTOR: BACULOVIRUS; SOURCE 12 EXPRESSION_SYSTEM_PLASMID: PFHMSP-LIC-N KEYWDS STRUCTURAL GENOMICS, STRUCTURAL GENOMICS CONSORTIUM, SGC, KEYWDS 2 AMINOPEPTIDASE, CLEAVAGE ON PAIR OF BASIC RESIDUES, CYTOPLASMIC KEYWDS 3 VESICLE, GLYCOPROTEIN, HYDROLASE, LYSOSOME, PROTEASE, SERINE KEYWDS 4 PROTEASE, ZYMOGEN EXPDTA X-RAY DIFFRACTION AUTHOR E.DOBROVETSKY,A.DONG,A.SEITOVA,L.CROMBETT,S.PAGANON,D.COSSAR, AUTHOR 2 A.M.EDWARDS,C.H.ARROWSMITH,C.BOUNTRA,J.WEIGELT,A.HASSEL,L.SHEWCHUK, AUTHOR 3 A.BOCHKAREV,STRUCTURAL GENOMICS CONSORTIUM (SGC) REVDAT 4 20-NOV-24 3JYH 1 HETSYN REVDAT 3 29-JUL-20 3JYH 1 COMPND REMARK SEQADV HETNAM REVDAT 3 2 1 LINK SITE ATOM REVDAT 2 13-JUL-11 3JYH 1 VERSN REVDAT 1 13-OCT-09 3JYH 0 JRNL AUTH E.DOBROVETSKY,A.DONG,A.SEITOVA,L.CROMBETT,S.PAGANON, JRNL AUTH 2 D.COSSAR,A.M.EDWARDS,C.H.ARROWSMITH,C.BOUNTRA,J.WEIGELT, JRNL AUTH 3 A.HASSEL,L.SHEWCHUK,A.BOCHKAREV JRNL TITL HUMAN DIPEPTIDYL PEPTIDASE DPP7 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.19 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.19 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 100.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 127511 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.182 REMARK 3 R VALUE (WORKING SET) : 0.180 REMARK 3 FREE R VALUE : 0.222 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 6400 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.19 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.24 REMARK 3 REFLECTION IN BIN (WORKING SET) : 7870 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 87.07 REMARK 3 BIN R VALUE (WORKING SET) : 0.2180 REMARK 3 BIN FREE R VALUE SET COUNT : 392 REMARK 3 BIN FREE R VALUE : 0.2580 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 13852 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 341 REMARK 3 SOLVENT ATOMS : 946 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.22 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.96000 REMARK 3 B22 (A**2) : -1.36000 REMARK 3 B33 (A**2) : -0.21000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -1.43000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.201 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.175 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.122 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.714 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.954 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.930 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 14632 ; 0.013 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 19969 ; 1.346 ; 1.963 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 1803 ; 5.860 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 679 ;33.572 ;23.108 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1998 ;13.188 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 103 ;18.862 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 2168 ; 0.089 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 11418 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 6821 ; 0.194 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 9977 ; 0.310 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 1073 ; 0.147 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 47 ; 0.167 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 8 ; 0.162 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 9137 ; 0.732 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 14193 ; 1.271 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 6281 ; 1.875 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 5775 ; 2.904 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3JYH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-SEP-09. REMARK 100 THE DEPOSITION ID IS D_1000055318. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-MAR-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9794 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 127772 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.190 REMARK 200 RESOLUTION RANGE LOW (A) : 100.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 9.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.11100 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 25.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.19 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.22 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.67 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.05 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2M AMMONIUM SULFATE, 0.2M SODIUM REMARK 280 ACETATE, 0.1M HEPES, 5% MPD, PH 7.5, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 300K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 65.10750 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4160 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 31530 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -10.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, E, F, G, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4200 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 31160 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -9.9 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D, I, J, K, L REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 24 REMARK 465 ALA A 25 REMARK 465 MET A 26 REMARK 465 ASP A 27 REMARK 465 GLN A 480 REMARK 465 GLN A 481 REMARK 465 PRO A 482 REMARK 465 ALA A 483 REMARK 465 LEU A 484 REMARK 465 ARG A 485 REMARK 465 GLY A 486 REMARK 465 GLY A 487 REMARK 465 PRO A 488 REMARK 465 ARG A 489 REMARK 465 LEU A 490 REMARK 465 SER A 491 REMARK 465 LEU A 492 REMARK 465 GLY B 24 REMARK 465 ALA B 25 REMARK 465 MET B 26 REMARK 465 ASP B 27 REMARK 465 GLN B 480 REMARK 465 GLN B 481 REMARK 465 PRO B 482 REMARK 465 ALA B 483 REMARK 465 LEU B 484 REMARK 465 ARG B 485 REMARK 465 GLY B 486 REMARK 465 GLY B 487 REMARK 465 PRO B 488 REMARK 465 ARG B 489 REMARK 465 LEU B 490 REMARK 465 SER B 491 REMARK 465 LEU B 492 REMARK 465 GLY C 24 REMARK 465 ALA C 25 REMARK 465 MET C 26 REMARK 465 ASP C 27 REMARK 465 GLU C 479 REMARK 465 GLN C 480 REMARK 465 GLN C 481 REMARK 465 PRO C 482 REMARK 465 ALA C 483 REMARK 465 LEU C 484 REMARK 465 ARG C 485 REMARK 465 GLY C 486 REMARK 465 GLY C 487 REMARK 465 PRO C 488 REMARK 465 ARG C 489 REMARK 465 LEU C 490 REMARK 465 SER C 491 REMARK 465 LEU C 492 REMARK 465 GLY D 24 REMARK 465 ALA D 25 REMARK 465 MET D 26 REMARK 465 ASP D 27 REMARK 465 ARG D 478 REMARK 465 GLU D 479 REMARK 465 GLN D 480 REMARK 465 GLN D 481 REMARK 465 PRO D 482 REMARK 465 ALA D 483 REMARK 465 LEU D 484 REMARK 465 ARG D 485 REMARK 465 GLY D 486 REMARK 465 GLY D 487 REMARK 465 PRO D 488 REMARK 465 ARG D 489 REMARK 465 LEU D 490 REMARK 465 SER D 491 REMARK 465 LEU D 492 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 28 CG OD1 OD2 REMARK 470 ARG A 34 NH1 NH2 REMARK 470 ARG A 47 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 62 CZ NH1 NH2 REMARK 470 ARG A 66 CZ NH1 NH2 REMARK 470 GLU A 68 CG CD OE1 OE2 REMARK 470 ALA A 89 CB REMARK 470 GLN A 119 CG CD OE1 NE2 REMARK 470 ARG A 203 NE CZ NH1 NH2 REMARK 470 GLN A 212 CG CD OE1 NE2 REMARK 470 LYS A 215 CE NZ REMARK 470 GLN A 218 CG CD OE1 NE2 REMARK 470 GLU A 252 CG CD OE1 OE2 REMARK 470 LYS A 253 CE NZ REMARK 470 ARG A 327 NE CZ NH1 NH2 REMARK 470 ARG A 380 CZ NH1 NH2 REMARK 470 ARG A 427 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 439 CD OE1 NE2 REMARK 470 LYS A 463 CD CE NZ REMARK 470 GLU A 471 CD OE1 OE2 REMARK 470 LYS A 474 CG CD CE NZ REMARK 470 ARG A 477 CZ NH1 NH2 REMARK 470 ARG A 478 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 479 CG CD OE1 OE2 REMARK 470 ASP B 28 CG OD1 OD2 REMARK 470 GLN B 32 CD OE1 NE2 REMARK 470 ARG B 47 CZ NH1 NH2 REMARK 470 ARG B 62 NE CZ NH1 NH2 REMARK 470 ARG B 66 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 68 CG CD OE1 OE2 REMARK 470 ALA B 89 CB REMARK 470 GLU B 97 CD OE1 OE2 REMARK 470 ARG B 98 CD NE CZ NH1 NH2 REMARK 470 GLN B 119 CG CD OE1 NE2 REMARK 470 LYS B 215 CE NZ REMARK 470 ARG B 221 CZ NH1 NH2 REMARK 470 GLU B 252 CG CD OE1 OE2 REMARK 470 LYS B 253 NZ REMARK 470 ARG B 327 NE CZ NH1 NH2 REMARK 470 GLU B 376 CG CD OE1 OE2 REMARK 470 ARG B 380 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 463 CD CE NZ REMARK 470 GLU B 471 CG CD OE1 OE2 REMARK 470 LYS B 474 CG CD CE NZ REMARK 470 ARG B 478 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 479 CG CD OE1 OE2 REMARK 470 ASP C 28 CG OD1 OD2 REMARK 470 ARG C 47 CZ NH1 NH2 REMARK 470 ARG C 66 NE CZ NH1 NH2 REMARK 470 GLU C 68 CG CD OE1 OE2 REMARK 470 ALA C 89 CB REMARK 470 GLU C 97 CG CD OE1 OE2 REMARK 470 ASP C 153 CG OD1 OD2 REMARK 470 ASP C 197 CG OD1 OD2 REMARK 470 ASN C 199 CG OD1 ND2 REMARK 470 LYS C 215 CG CD CE NZ REMARK 470 GLN C 218 CG CD OE1 NE2 REMARK 470 GLU C 252 CG CD OE1 OE2 REMARK 470 LYS C 253 CE NZ REMARK 470 LYS C 290 CD CE NZ REMARK 470 ARG C 327 CG CD NE CZ NH1 NH2 REMARK 470 ARG C 427 CG CD NE CZ NH1 NH2 REMARK 470 GLU C 471 CD OE1 OE2 REMARK 470 LYS C 474 CG CD CE NZ REMARK 470 ARG C 477 CG CD NE CZ NH1 NH2 REMARK 470 ARG C 478 CG CD NE CZ NH1 NH2 REMARK 470 ASP D 28 CG OD1 OD2 REMARK 470 ARG D 47 NE CZ NH1 NH2 REMARK 470 ARG D 62 CG CD NE CZ NH1 NH2 REMARK 470 ARG D 66 CG CD NE CZ NH1 NH2 REMARK 470 GLU D 68 CG CD OE1 OE2 REMARK 470 ALA D 89 CB REMARK 470 GLU D 97 CG CD OE1 OE2 REMARK 470 LYS D 112 CD CE NZ REMARK 470 GLN D 119 CG CD OE1 NE2 REMARK 470 LYS D 215 CE NZ REMARK 470 GLN D 218 CG CD OE1 NE2 REMARK 470 GLU D 222 CG CD OE1 OE2 REMARK 470 LEU D 232 CG CD1 CD2 REMARK 470 GLU D 252 CG CD OE1 OE2 REMARK 470 LYS D 253 CG CD CE NZ REMARK 470 ARG D 327 CG CD NE CZ NH1 NH2 REMARK 470 GLU D 376 CG CD OE1 OE2 REMARK 470 ARG D 380 CG CD NE CZ NH1 NH2 REMARK 470 ASP D 384 CG OD1 OD2 REMARK 470 LYS D 463 CG CD CE NZ REMARK 470 GLU D 471 CG CD OE1 OE2 REMARK 470 LYS D 474 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 653 O HOH A 1230 2.12 REMARK 500 O HOH B 628 O HOH B 667 2.12 REMARK 500 NE2 GLN D 247 OD1 ASP D 324 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 66 -10.40 -49.15 REMARK 500 ASN A 77 -142.92 -107.92 REMARK 500 TYR A 109 -1.40 77.11 REMARK 500 SER A 113 73.54 -104.42 REMARK 500 ALA A 151 48.11 -149.54 REMARK 500 SER A 162 -136.41 66.62 REMARK 500 SER A 213 108.73 -164.00 REMARK 500 SER A 250 -23.87 -156.86 REMARK 500 PHE A 280 -76.57 -92.17 REMARK 500 ASN A 315 45.51 -146.69 REMARK 500 THR A 353 -66.69 -128.93 REMARK 500 VAL A 364 -58.00 -120.76 REMARK 500 TRP A 400 -8.11 85.61 REMARK 500 ALA A 442 -133.95 -95.00 REMARK 500 HIS A 444 53.39 33.24 REMARK 500 ASN B 77 -146.86 -106.36 REMARK 500 TYR B 109 -0.72 76.27 REMARK 500 SER B 162 -138.33 71.72 REMARK 500 SER B 213 115.38 -166.63 REMARK 500 SER B 250 -32.17 -149.79 REMARK 500 ASP B 279 64.68 -152.91 REMARK 500 PHE B 280 -75.29 -95.33 REMARK 500 ASN B 315 40.47 -142.52 REMARK 500 THR B 353 -68.44 -134.19 REMARK 500 TRP B 400 -1.86 87.04 REMARK 500 ALA B 442 -134.46 -92.05 REMARK 500 HIS B 444 53.33 36.15 REMARK 500 ARG C 66 -4.99 -54.73 REMARK 500 ASN C 77 -141.85 -110.11 REMARK 500 GLU C 78 45.01 -84.48 REMARK 500 SER C 88 50.19 -101.31 REMARK 500 TYR C 109 -1.52 80.45 REMARK 500 SER C 113 75.31 -104.48 REMARK 500 ALA C 151 56.14 -69.84 REMARK 500 SER C 162 -132.10 70.42 REMARK 500 SER C 250 -39.21 -145.04 REMARK 500 ASP C 279 63.78 -151.66 REMARK 500 PHE C 280 -72.86 -90.15 REMARK 500 ASN C 315 45.31 -144.37 REMARK 500 THR C 353 -65.33 -127.94 REMARK 500 TRP C 400 -8.90 81.13 REMARK 500 ALA C 442 -137.22 -92.48 REMARK 500 HIS C 444 60.39 28.84 REMARK 500 ARG D 62 -39.92 -35.64 REMARK 500 ARG D 66 -1.14 -48.08 REMARK 500 ASN D 77 -147.77 -116.81 REMARK 500 GLU D 78 46.84 -73.37 REMARK 500 SER D 88 53.36 -112.05 REMARK 500 TYR D 109 -3.08 74.61 REMARK 500 SER D 162 -135.61 68.47 REMARK 500 REMARK 500 THIS ENTRY HAS 59 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL DBREF 3JYH A 28 492 UNP Q9UHL4 DPP2_HUMAN 28 492 DBREF 3JYH B 28 492 UNP Q9UHL4 DPP2_HUMAN 28 492 DBREF 3JYH C 28 492 UNP Q9UHL4 DPP2_HUMAN 28 492 DBREF 3JYH D 28 492 UNP Q9UHL4 DPP2_HUMAN 28 492 SEQADV 3JYH GLY A 24 UNP Q9UHL4 EXPRESSION TAG SEQADV 3JYH ALA A 25 UNP Q9UHL4 EXPRESSION TAG SEQADV 3JYH MET A 26 UNP Q9UHL4 EXPRESSION TAG SEQADV 3JYH ASP A 27 UNP Q9UHL4 EXPRESSION TAG SEQADV 3JYH GLY B 24 UNP Q9UHL4 EXPRESSION TAG SEQADV 3JYH ALA B 25 UNP Q9UHL4 EXPRESSION TAG SEQADV 3JYH MET B 26 UNP Q9UHL4 EXPRESSION TAG SEQADV 3JYH ASP B 27 UNP Q9UHL4 EXPRESSION TAG SEQADV 3JYH GLY C 24 UNP Q9UHL4 EXPRESSION TAG SEQADV 3JYH ALA C 25 UNP Q9UHL4 EXPRESSION TAG SEQADV 3JYH MET C 26 UNP Q9UHL4 EXPRESSION TAG SEQADV 3JYH ASP C 27 UNP Q9UHL4 EXPRESSION TAG SEQADV 3JYH GLY D 24 UNP Q9UHL4 EXPRESSION TAG SEQADV 3JYH ALA D 25 UNP Q9UHL4 EXPRESSION TAG SEQADV 3JYH MET D 26 UNP Q9UHL4 EXPRESSION TAG SEQADV 3JYH ASP D 27 UNP Q9UHL4 EXPRESSION TAG SEQRES 1 A 469 GLY ALA MET ASP ASP PRO GLY PHE GLN GLU ARG PHE PHE SEQRES 2 A 469 GLN GLN ARG LEU ASP HIS PHE ASN PHE GLU ARG PHE GLY SEQRES 3 A 469 ASN LYS THR PHE PRO GLN ARG PHE LEU VAL SER ASP ARG SEQRES 4 A 469 PHE TRP VAL ARG GLY GLU GLY PRO ILE PHE PHE TYR THR SEQRES 5 A 469 GLY ASN GLU GLY ASP VAL TRP ALA PHE ALA ASN ASN SER SEQRES 6 A 469 ALA PHE VAL ALA GLU LEU ALA ALA GLU ARG GLY ALA LEU SEQRES 7 A 469 LEU VAL PHE ALA GLU HIS ARG TYR TYR GLY LYS SER LEU SEQRES 8 A 469 PRO PHE GLY ALA GLN SER THR GLN ARG GLY HIS THR GLU SEQRES 9 A 469 LEU LEU THR VAL GLU GLN ALA LEU ALA ASP PHE ALA GLU SEQRES 10 A 469 LEU LEU ARG ALA LEU ARG ARG ASP LEU GLY ALA GLN ASP SEQRES 11 A 469 ALA PRO ALA ILE ALA PHE GLY GLY SER TYR GLY GLY MET SEQRES 12 A 469 LEU SER ALA TYR LEU ARG MET LYS TYR PRO HIS LEU VAL SEQRES 13 A 469 ALA GLY ALA LEU ALA ALA SER ALA PRO VAL LEU ALA VAL SEQRES 14 A 469 ALA GLY LEU GLY ASP SER ASN GLN PHE PHE ARG ASP VAL SEQRES 15 A 469 THR ALA ASP PHE GLU GLY GLN SER PRO LYS CYS THR GLN SEQRES 16 A 469 GLY VAL ARG GLU ALA PHE ARG GLN ILE LYS ASP LEU PHE SEQRES 17 A 469 LEU GLN GLY ALA TYR ASP THR VAL ARG TRP GLU PHE GLY SEQRES 18 A 469 THR CYS GLN PRO LEU SER ASP GLU LYS ASP LEU THR GLN SEQRES 19 A 469 LEU PHE MET PHE ALA ARG ASN ALA PHE THR VAL LEU ALA SEQRES 20 A 469 MET MET ASP TYR PRO TYR PRO THR ASP PHE LEU GLY PRO SEQRES 21 A 469 LEU PRO ALA ASN PRO VAL LYS VAL GLY CYS ASP ARG LEU SEQRES 22 A 469 LEU SER GLU ALA GLN ARG ILE THR GLY LEU ARG ALA LEU SEQRES 23 A 469 ALA GLY LEU VAL TYR ASN ALA SER GLY SER GLU HIS CYS SEQRES 24 A 469 TYR ASP ILE TYR ARG LEU TYR HIS SER CYS ALA ASP PRO SEQRES 25 A 469 THR GLY CYS GLY THR GLY PRO ASP ALA ARG ALA TRP ASP SEQRES 26 A 469 TYR GLN ALA CYS THR GLU ILE ASN LEU THR PHE ALA SER SEQRES 27 A 469 ASN ASN VAL THR ASP MET PHE PRO ASP LEU PRO PHE THR SEQRES 28 A 469 ASP GLU LEU ARG GLN ARG TYR CYS LEU ASP THR TRP GLY SEQRES 29 A 469 VAL TRP PRO ARG PRO ASP TRP LEU LEU THR SER PHE TRP SEQRES 30 A 469 GLY GLY ASP LEU ARG ALA ALA SER ASN ILE ILE PHE SER SEQRES 31 A 469 ASN GLY ASN LEU ASP PRO TRP ALA GLY GLY GLY ILE ARG SEQRES 32 A 469 ARG ASN LEU SER ALA SER VAL ILE ALA VAL THR ILE GLN SEQRES 33 A 469 GLY GLY ALA HIS HIS LEU ASP LEU ARG ALA SER HIS PRO SEQRES 34 A 469 GLU ASP PRO ALA SER VAL VAL GLU ALA ARG LYS LEU GLU SEQRES 35 A 469 ALA THR ILE ILE GLY GLU TRP VAL LYS ALA ALA ARG ARG SEQRES 36 A 469 GLU GLN GLN PRO ALA LEU ARG GLY GLY PRO ARG LEU SER SEQRES 37 A 469 LEU SEQRES 1 B 469 GLY ALA MET ASP ASP PRO GLY PHE GLN GLU ARG PHE PHE SEQRES 2 B 469 GLN GLN ARG LEU ASP HIS PHE ASN PHE GLU ARG PHE GLY SEQRES 3 B 469 ASN LYS THR PHE PRO GLN ARG PHE LEU VAL SER ASP ARG SEQRES 4 B 469 PHE TRP VAL ARG GLY GLU GLY PRO ILE PHE PHE TYR THR SEQRES 5 B 469 GLY ASN GLU GLY ASP VAL TRP ALA PHE ALA ASN ASN SER SEQRES 6 B 469 ALA PHE VAL ALA GLU LEU ALA ALA GLU ARG GLY ALA LEU SEQRES 7 B 469 LEU VAL PHE ALA GLU HIS ARG TYR TYR GLY LYS SER LEU SEQRES 8 B 469 PRO PHE GLY ALA GLN SER THR GLN ARG GLY HIS THR GLU SEQRES 9 B 469 LEU LEU THR VAL GLU GLN ALA LEU ALA ASP PHE ALA GLU SEQRES 10 B 469 LEU LEU ARG ALA LEU ARG ARG ASP LEU GLY ALA GLN ASP SEQRES 11 B 469 ALA PRO ALA ILE ALA PHE GLY GLY SER TYR GLY GLY MET SEQRES 12 B 469 LEU SER ALA TYR LEU ARG MET LYS TYR PRO HIS LEU VAL SEQRES 13 B 469 ALA GLY ALA LEU ALA ALA SER ALA PRO VAL LEU ALA VAL SEQRES 14 B 469 ALA GLY LEU GLY ASP SER ASN GLN PHE PHE ARG ASP VAL SEQRES 15 B 469 THR ALA ASP PHE GLU GLY GLN SER PRO LYS CYS THR GLN SEQRES 16 B 469 GLY VAL ARG GLU ALA PHE ARG GLN ILE LYS ASP LEU PHE SEQRES 17 B 469 LEU GLN GLY ALA TYR ASP THR VAL ARG TRP GLU PHE GLY SEQRES 18 B 469 THR CYS GLN PRO LEU SER ASP GLU LYS ASP LEU THR GLN SEQRES 19 B 469 LEU PHE MET PHE ALA ARG ASN ALA PHE THR VAL LEU ALA SEQRES 20 B 469 MET MET ASP TYR PRO TYR PRO THR ASP PHE LEU GLY PRO SEQRES 21 B 469 LEU PRO ALA ASN PRO VAL LYS VAL GLY CYS ASP ARG LEU SEQRES 22 B 469 LEU SER GLU ALA GLN ARG ILE THR GLY LEU ARG ALA LEU SEQRES 23 B 469 ALA GLY LEU VAL TYR ASN ALA SER GLY SER GLU HIS CYS SEQRES 24 B 469 TYR ASP ILE TYR ARG LEU TYR HIS SER CYS ALA ASP PRO SEQRES 25 B 469 THR GLY CYS GLY THR GLY PRO ASP ALA ARG ALA TRP ASP SEQRES 26 B 469 TYR GLN ALA CYS THR GLU ILE ASN LEU THR PHE ALA SER SEQRES 27 B 469 ASN ASN VAL THR ASP MET PHE PRO ASP LEU PRO PHE THR SEQRES 28 B 469 ASP GLU LEU ARG GLN ARG TYR CYS LEU ASP THR TRP GLY SEQRES 29 B 469 VAL TRP PRO ARG PRO ASP TRP LEU LEU THR SER PHE TRP SEQRES 30 B 469 GLY GLY ASP LEU ARG ALA ALA SER ASN ILE ILE PHE SER SEQRES 31 B 469 ASN GLY ASN LEU ASP PRO TRP ALA GLY GLY GLY ILE ARG SEQRES 32 B 469 ARG ASN LEU SER ALA SER VAL ILE ALA VAL THR ILE GLN SEQRES 33 B 469 GLY GLY ALA HIS HIS LEU ASP LEU ARG ALA SER HIS PRO SEQRES 34 B 469 GLU ASP PRO ALA SER VAL VAL GLU ALA ARG LYS LEU GLU SEQRES 35 B 469 ALA THR ILE ILE GLY GLU TRP VAL LYS ALA ALA ARG ARG SEQRES 36 B 469 GLU GLN GLN PRO ALA LEU ARG GLY GLY PRO ARG LEU SER SEQRES 37 B 469 LEU SEQRES 1 C 469 GLY ALA MET ASP ASP PRO GLY PHE GLN GLU ARG PHE PHE SEQRES 2 C 469 GLN GLN ARG LEU ASP HIS PHE ASN PHE GLU ARG PHE GLY SEQRES 3 C 469 ASN LYS THR PHE PRO GLN ARG PHE LEU VAL SER ASP ARG SEQRES 4 C 469 PHE TRP VAL ARG GLY GLU GLY PRO ILE PHE PHE TYR THR SEQRES 5 C 469 GLY ASN GLU GLY ASP VAL TRP ALA PHE ALA ASN ASN SER SEQRES 6 C 469 ALA PHE VAL ALA GLU LEU ALA ALA GLU ARG GLY ALA LEU SEQRES 7 C 469 LEU VAL PHE ALA GLU HIS ARG TYR TYR GLY LYS SER LEU SEQRES 8 C 469 PRO PHE GLY ALA GLN SER THR GLN ARG GLY HIS THR GLU SEQRES 9 C 469 LEU LEU THR VAL GLU GLN ALA LEU ALA ASP PHE ALA GLU SEQRES 10 C 469 LEU LEU ARG ALA LEU ARG ARG ASP LEU GLY ALA GLN ASP SEQRES 11 C 469 ALA PRO ALA ILE ALA PHE GLY GLY SER TYR GLY GLY MET SEQRES 12 C 469 LEU SER ALA TYR LEU ARG MET LYS TYR PRO HIS LEU VAL SEQRES 13 C 469 ALA GLY ALA LEU ALA ALA SER ALA PRO VAL LEU ALA VAL SEQRES 14 C 469 ALA GLY LEU GLY ASP SER ASN GLN PHE PHE ARG ASP VAL SEQRES 15 C 469 THR ALA ASP PHE GLU GLY GLN SER PRO LYS CYS THR GLN SEQRES 16 C 469 GLY VAL ARG GLU ALA PHE ARG GLN ILE LYS ASP LEU PHE SEQRES 17 C 469 LEU GLN GLY ALA TYR ASP THR VAL ARG TRP GLU PHE GLY SEQRES 18 C 469 THR CYS GLN PRO LEU SER ASP GLU LYS ASP LEU THR GLN SEQRES 19 C 469 LEU PHE MET PHE ALA ARG ASN ALA PHE THR VAL LEU ALA SEQRES 20 C 469 MET MET ASP TYR PRO TYR PRO THR ASP PHE LEU GLY PRO SEQRES 21 C 469 LEU PRO ALA ASN PRO VAL LYS VAL GLY CYS ASP ARG LEU SEQRES 22 C 469 LEU SER GLU ALA GLN ARG ILE THR GLY LEU ARG ALA LEU SEQRES 23 C 469 ALA GLY LEU VAL TYR ASN ALA SER GLY SER GLU HIS CYS SEQRES 24 C 469 TYR ASP ILE TYR ARG LEU TYR HIS SER CYS ALA ASP PRO SEQRES 25 C 469 THR GLY CYS GLY THR GLY PRO ASP ALA ARG ALA TRP ASP SEQRES 26 C 469 TYR GLN ALA CYS THR GLU ILE ASN LEU THR PHE ALA SER SEQRES 27 C 469 ASN ASN VAL THR ASP MET PHE PRO ASP LEU PRO PHE THR SEQRES 28 C 469 ASP GLU LEU ARG GLN ARG TYR CYS LEU ASP THR TRP GLY SEQRES 29 C 469 VAL TRP PRO ARG PRO ASP TRP LEU LEU THR SER PHE TRP SEQRES 30 C 469 GLY GLY ASP LEU ARG ALA ALA SER ASN ILE ILE PHE SER SEQRES 31 C 469 ASN GLY ASN LEU ASP PRO TRP ALA GLY GLY GLY ILE ARG SEQRES 32 C 469 ARG ASN LEU SER ALA SER VAL ILE ALA VAL THR ILE GLN SEQRES 33 C 469 GLY GLY ALA HIS HIS LEU ASP LEU ARG ALA SER HIS PRO SEQRES 34 C 469 GLU ASP PRO ALA SER VAL VAL GLU ALA ARG LYS LEU GLU SEQRES 35 C 469 ALA THR ILE ILE GLY GLU TRP VAL LYS ALA ALA ARG ARG SEQRES 36 C 469 GLU GLN GLN PRO ALA LEU ARG GLY GLY PRO ARG LEU SER SEQRES 37 C 469 LEU SEQRES 1 D 469 GLY ALA MET ASP ASP PRO GLY PHE GLN GLU ARG PHE PHE SEQRES 2 D 469 GLN GLN ARG LEU ASP HIS PHE ASN PHE GLU ARG PHE GLY SEQRES 3 D 469 ASN LYS THR PHE PRO GLN ARG PHE LEU VAL SER ASP ARG SEQRES 4 D 469 PHE TRP VAL ARG GLY GLU GLY PRO ILE PHE PHE TYR THR SEQRES 5 D 469 GLY ASN GLU GLY ASP VAL TRP ALA PHE ALA ASN ASN SER SEQRES 6 D 469 ALA PHE VAL ALA GLU LEU ALA ALA GLU ARG GLY ALA LEU SEQRES 7 D 469 LEU VAL PHE ALA GLU HIS ARG TYR TYR GLY LYS SER LEU SEQRES 8 D 469 PRO PHE GLY ALA GLN SER THR GLN ARG GLY HIS THR GLU SEQRES 9 D 469 LEU LEU THR VAL GLU GLN ALA LEU ALA ASP PHE ALA GLU SEQRES 10 D 469 LEU LEU ARG ALA LEU ARG ARG ASP LEU GLY ALA GLN ASP SEQRES 11 D 469 ALA PRO ALA ILE ALA PHE GLY GLY SER TYR GLY GLY MET SEQRES 12 D 469 LEU SER ALA TYR LEU ARG MET LYS TYR PRO HIS LEU VAL SEQRES 13 D 469 ALA GLY ALA LEU ALA ALA SER ALA PRO VAL LEU ALA VAL SEQRES 14 D 469 ALA GLY LEU GLY ASP SER ASN GLN PHE PHE ARG ASP VAL SEQRES 15 D 469 THR ALA ASP PHE GLU GLY GLN SER PRO LYS CYS THR GLN SEQRES 16 D 469 GLY VAL ARG GLU ALA PHE ARG GLN ILE LYS ASP LEU PHE SEQRES 17 D 469 LEU GLN GLY ALA TYR ASP THR VAL ARG TRP GLU PHE GLY SEQRES 18 D 469 THR CYS GLN PRO LEU SER ASP GLU LYS ASP LEU THR GLN SEQRES 19 D 469 LEU PHE MET PHE ALA ARG ASN ALA PHE THR VAL LEU ALA SEQRES 20 D 469 MET MET ASP TYR PRO TYR PRO THR ASP PHE LEU GLY PRO SEQRES 21 D 469 LEU PRO ALA ASN PRO VAL LYS VAL GLY CYS ASP ARG LEU SEQRES 22 D 469 LEU SER GLU ALA GLN ARG ILE THR GLY LEU ARG ALA LEU SEQRES 23 D 469 ALA GLY LEU VAL TYR ASN ALA SER GLY SER GLU HIS CYS SEQRES 24 D 469 TYR ASP ILE TYR ARG LEU TYR HIS SER CYS ALA ASP PRO SEQRES 25 D 469 THR GLY CYS GLY THR GLY PRO ASP ALA ARG ALA TRP ASP SEQRES 26 D 469 TYR GLN ALA CYS THR GLU ILE ASN LEU THR PHE ALA SER SEQRES 27 D 469 ASN ASN VAL THR ASP MET PHE PRO ASP LEU PRO PHE THR SEQRES 28 D 469 ASP GLU LEU ARG GLN ARG TYR CYS LEU ASP THR TRP GLY SEQRES 29 D 469 VAL TRP PRO ARG PRO ASP TRP LEU LEU THR SER PHE TRP SEQRES 30 D 469 GLY GLY ASP LEU ARG ALA ALA SER ASN ILE ILE PHE SER SEQRES 31 D 469 ASN GLY ASN LEU ASP PRO TRP ALA GLY GLY GLY ILE ARG SEQRES 32 D 469 ARG ASN LEU SER ALA SER VAL ILE ALA VAL THR ILE GLN SEQRES 33 D 469 GLY GLY ALA HIS HIS LEU ASP LEU ARG ALA SER HIS PRO SEQRES 34 D 469 GLU ASP PRO ALA SER VAL VAL GLU ALA ARG LYS LEU GLU SEQRES 35 D 469 ALA THR ILE ILE GLY GLU TRP VAL LYS ALA ALA ARG ARG SEQRES 36 D 469 GLU GLN GLN PRO ALA LEU ARG GLY GLY PRO ARG LEU SER SEQRES 37 D 469 LEU MODRES 3JYH ASN A 50 ASN GLYCOSYLATION SITE MODRES 3JYH ASN A 86 ASN GLYCOSYLATION SITE MODRES 3JYH ASN A 315 ASN GLYCOSYLATION SITE MODRES 3JYH ASN A 363 ASN GLYCOSYLATION SITE MODRES 3JYH ASN B 86 ASN GLYCOSYLATION SITE MODRES 3JYH ASN B 315 ASN GLYCOSYLATION SITE MODRES 3JYH ASN B 363 ASN GLYCOSYLATION SITE MODRES 3JYH ASN C 50 ASN GLYCOSYLATION SITE MODRES 3JYH ASN C 86 ASN GLYCOSYLATION SITE MODRES 3JYH ASN C 315 ASN GLYCOSYLATION SITE MODRES 3JYH ASN C 363 ASN GLYCOSYLATION SITE MODRES 3JYH ASN D 86 ASN GLYCOSYLATION SITE MODRES 3JYH ASN D 315 ASN GLYCOSYLATION SITE MODRES 3JYH ASN D 363 ASN GLYCOSYLATION SITE HET NAG E 1 14 HET NAG E 2 14 HET BMA E 3 11 HET NAG F 1 14 HET NAG F 2 14 HET NAG G 1 14 HET NAG G 2 14 HET BMA G 3 11 HET NAG H 1 14 HET NAG H 2 14 HET NAG I 1 14 HET NAG I 2 14 HET BMA I 3 11 HET NAG J 1 14 HET NAG J 2 14 HET NAG K 1 14 HET NAG K 2 14 HET NAG L 1 14 HET NAG L 2 14 HET NAG A 1 14 HET NAG A 495 14 HET NAG B 1 14 HET NAG C 494 14 HET NAG C 495 14 HET NAG D 1 14 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN BMA BETA-D-MANNOSE; D-MANNOSE; MANNOSE FORMUL 5 NAG 22(C8 H15 N O6) FORMUL 5 BMA 3(C6 H12 O6) FORMUL 19 HOH *946(H2 O) HELIX 1 1 ASP A 80 SER A 88 1 9 HELIX 2 2 SER A 88 GLY A 99 1 12 HELIX 3 3 PHE A 116 GLN A 122 5 7 HELIX 4 4 THR A 130 LEU A 149 1 20 HELIX 5 5 SER A 162 TYR A 175 1 14 HELIX 6 6 LEU A 190 GLY A 194 5 5 HELIX 7 7 ASN A 199 SER A 213 1 15 HELIX 8 8 SER A 213 GLN A 233 1 21 HELIX 9 9 ALA A 235 GLY A 244 1 10 HELIX 10 10 ASP A 251 MET A 272 1 22 HELIX 11 11 ASN A 287 SER A 298 1 12 HELIX 12 12 GLN A 301 ASN A 315 1 15 HELIX 13 13 ASP A 324 TYR A 329 1 6 HELIX 14 14 GLY A 341 CYS A 352 1 12 HELIX 15 15 THR A 374 GLY A 387 1 14 HELIX 16 16 ASP A 393 TRP A 400 1 8 HELIX 17 17 ASP A 418 GLY A 424 5 7 HELIX 18 18 HIS A 444 ARG A 448 5 5 HELIX 19 19 PRO A 455 GLU A 479 1 25 HELIX 20 20 ASP B 80 SER B 88 1 9 HELIX 21 21 SER B 88 GLY B 99 1 12 HELIX 22 22 PHE B 116 GLN B 122 5 7 HELIX 23 23 THR B 130 LEU B 149 1 20 HELIX 24 24 SER B 162 TYR B 175 1 14 HELIX 25 25 LEU B 190 GLY B 194 5 5 HELIX 26 26 ASN B 199 SER B 213 1 15 HELIX 27 27 SER B 213 GLN B 233 1 21 HELIX 28 28 ALA B 235 GLY B 244 1 10 HELIX 29 29 ASP B 251 MET B 272 1 22 HELIX 30 30 ASN B 287 SER B 298 1 12 HELIX 31 31 GLN B 301 ASN B 315 1 15 HELIX 32 32 ASP B 324 TYR B 329 1 6 HELIX 33 33 GLY B 341 CYS B 352 1 12 HELIX 34 34 THR B 374 GLY B 387 1 14 HELIX 35 35 ASP B 393 TRP B 400 1 8 HELIX 36 36 TRP B 420 GLY B 424 5 5 HELIX 37 37 HIS B 444 ARG B 448 5 5 HELIX 38 38 PRO B 455 GLU B 479 1 25 HELIX 39 39 ASP C 80 SER C 88 1 9 HELIX 40 40 SER C 88 GLY C 99 1 12 HELIX 41 41 PHE C 116 GLN C 122 5 7 HELIX 42 42 HIS C 125 LEU C 129 5 5 HELIX 43 43 THR C 130 LEU C 149 1 20 HELIX 44 44 SER C 162 TYR C 175 1 14 HELIX 45 45 LEU C 190 GLY C 194 5 5 HELIX 46 46 ASN C 199 SER C 213 1 15 HELIX 47 47 SER C 213 GLN C 233 1 21 HELIX 48 48 ALA C 235 GLY C 244 1 10 HELIX 49 49 ASP C 251 MET C 272 1 22 HELIX 50 50 ASN C 287 LEU C 297 1 11 HELIX 51 51 GLN C 301 ASN C 315 1 15 HELIX 52 52 GLY C 341 CYS C 352 1 12 HELIX 53 53 THR C 374 GLY C 387 1 14 HELIX 54 54 ASP C 393 TRP C 400 1 8 HELIX 55 55 TRP C 420 GLY C 424 5 5 HELIX 56 56 HIS C 444 ARG C 448 5 5 HELIX 57 57 PRO C 455 ARG C 477 1 23 HELIX 58 58 ASP D 80 SER D 88 1 9 HELIX 59 59 SER D 88 GLY D 99 1 12 HELIX 60 60 PHE D 116 GLN D 122 5 7 HELIX 61 61 THR D 130 GLY D 150 1 21 HELIX 62 62 SER D 162 TYR D 175 1 14 HELIX 63 63 PRO D 188 ALA D 193 1 6 HELIX 64 64 ASN D 199 SER D 213 1 15 HELIX 65 65 SER D 213 GLN D 233 1 21 HELIX 66 66 ALA D 235 GLY D 244 1 10 HELIX 67 67 ASP D 251 MET D 272 1 22 HELIX 68 68 ASN D 287 SER D 298 1 12 HELIX 69 69 GLN D 301 ASN D 315 1 15 HELIX 70 70 ASP D 324 TYR D 329 1 6 HELIX 71 71 GLY D 341 CYS D 352 1 12 HELIX 72 72 THR D 374 GLY D 387 1 14 HELIX 73 73 ASP D 393 TRP D 400 1 8 HELIX 74 74 ASP D 418 GLY D 424 5 7 HELIX 75 75 HIS D 444 ARG D 448 5 5 HELIX 76 76 PRO D 455 ARG D 477 1 23 SHEET 1 A 8 GLN A 32 ARG A 39 0 SHEET 2 A 8 THR A 52 SER A 60 -1 O PHE A 53 N GLN A 38 SHEET 3 A 8 LEU A 101 ALA A 105 -1 O PHE A 104 N LEU A 58 SHEET 4 A 8 ILE A 71 THR A 75 1 N PHE A 72 O LEU A 101 SHEET 5 A 8 ALA A 156 GLY A 161 1 O ILE A 157 N PHE A 73 SHEET 6 A 8 GLY A 181 ALA A 185 1 O ALA A 185 N GLY A 160 SHEET 7 A 8 ILE A 410 GLY A 415 1 O ILE A 411 N ALA A 184 SHEET 8 A 8 VAL A 433 ILE A 438 1 O ILE A 434 N PHE A 412 SHEET 1 B 2 THR A 278 ASP A 279 0 SHEET 2 B 2 PRO A 283 LEU A 284 -1 O LEU A 284 N THR A 278 SHEET 1 C 8 GLN B 32 ARG B 39 0 SHEET 2 C 8 THR B 52 SER B 60 -1 O PHE B 53 N GLN B 38 SHEET 3 C 8 LEU B 101 ALA B 105 -1 O PHE B 104 N LEU B 58 SHEET 4 C 8 ILE B 71 THR B 75 1 N PHE B 72 O LEU B 101 SHEET 5 C 8 ALA B 156 GLY B 161 1 O ILE B 157 N PHE B 73 SHEET 6 C 8 GLY B 181 ALA B 185 1 O LEU B 183 N ALA B 158 SHEET 7 C 8 ILE B 410 GLY B 415 1 O ILE B 411 N ALA B 184 SHEET 8 C 8 VAL B 433 ILE B 438 1 O ILE B 434 N PHE B 412 SHEET 1 D 2 THR B 278 ASP B 279 0 SHEET 2 D 2 PRO B 283 LEU B 284 -1 O LEU B 284 N THR B 278 SHEET 1 E 8 GLN C 32 ARG C 39 0 SHEET 2 E 8 THR C 52 SER C 60 -1 O GLN C 55 N PHE C 36 SHEET 3 E 8 LEU C 101 ALA C 105 -1 O PHE C 104 N LEU C 58 SHEET 4 E 8 ILE C 71 THR C 75 1 N PHE C 72 O LEU C 101 SHEET 5 E 8 ALA C 156 GLY C 161 1 O PHE C 159 N THR C 75 SHEET 6 E 8 GLY C 181 ALA C 185 1 O LEU C 183 N ALA C 158 SHEET 7 E 8 ILE C 410 GLY C 415 1 O ILE C 411 N ALA C 184 SHEET 8 E 8 VAL C 433 ILE C 438 1 O ILE C 434 N PHE C 412 SHEET 1 F 2 THR C 278 ASP C 279 0 SHEET 2 F 2 PRO C 283 LEU C 284 -1 O LEU C 284 N THR C 278 SHEET 1 G 8 GLN D 32 ARG D 39 0 SHEET 2 G 8 THR D 52 SER D 60 -1 O PHE D 53 N GLN D 38 SHEET 3 G 8 LEU D 101 ALA D 105 -1 O PHE D 104 N LEU D 58 SHEET 4 G 8 ILE D 71 THR D 75 1 N PHE D 72 O LEU D 101 SHEET 5 G 8 ALA D 156 GLY D 161 1 O PHE D 159 N PHE D 73 SHEET 6 G 8 GLY D 181 ALA D 185 1 O ALA D 185 N GLY D 160 SHEET 7 G 8 ILE D 410 GLY D 415 1 O ILE D 411 N ALA D 184 SHEET 8 G 8 VAL D 433 ILE D 438 1 O ILE D 434 N PHE D 412 SHEET 1 H 2 THR D 278 ASP D 279 0 SHEET 2 H 2 PRO D 283 LEU D 284 -1 O LEU D 284 N THR D 278 SSBOND 1 CYS A 216 CYS A 293 1555 1555 2.09 SSBOND 2 CYS A 246 CYS A 322 1555 1555 2.08 SSBOND 3 CYS A 332 CYS A 338 1555 1555 2.05 SSBOND 4 CYS A 352 CYS A 382 1555 1555 2.04 SSBOND 5 CYS B 216 CYS B 293 1555 1555 2.07 SSBOND 6 CYS B 246 CYS B 322 1555 1555 2.06 SSBOND 7 CYS B 332 CYS B 338 1555 1555 2.03 SSBOND 8 CYS B 352 CYS B 382 1555 1555 2.04 SSBOND 9 CYS C 216 CYS C 293 1555 1555 2.08 SSBOND 10 CYS C 246 CYS C 322 1555 1555 2.07 SSBOND 11 CYS C 332 CYS C 338 1555 1555 2.06 SSBOND 12 CYS C 352 CYS C 382 1555 1555 2.08 SSBOND 13 CYS D 216 CYS D 293 1555 1555 2.04 SSBOND 14 CYS D 246 CYS D 322 1555 1555 2.10 SSBOND 15 CYS D 332 CYS D 338 1555 1555 2.02 SSBOND 16 CYS D 352 CYS D 382 1555 1555 2.04 LINK C1 NAG A 1 ND2 ASN A 86 1555 1555 1.45 LINK ND2 ASN A 50 C1 NAG A 495 1555 1555 1.45 LINK ND2 ASN A 315 C1 NAG F 1 1555 1555 1.44 LINK ND2 ASN A 363 C1 NAG E 1 1555 1555 1.45 LINK C1 NAG B 1 ND2 ASN B 86 1555 1555 1.45 LINK ND2 ASN B 315 C1 NAG H 1 1555 1555 1.45 LINK ND2 ASN B 363 C1 NAG G 1 1555 1555 1.44 LINK ND2 ASN C 50 C1 NAG C 494 1555 1555 1.45 LINK ND2 ASN C 86 C1 NAG C 495 1555 1555 1.44 LINK ND2 ASN C 315 C1 NAG J 1 1555 1555 1.43 LINK ND2 ASN C 363 C1 NAG I 1 1555 1555 1.46 LINK C1 NAG D 1 ND2 ASN D 86 1555 1555 1.45 LINK ND2 ASN D 315 C1 NAG L 1 1555 1555 1.45 LINK ND2 ASN D 363 C1 NAG K 1 1555 1555 1.44 LINK O4 NAG E 1 C1 NAG E 2 1555 1555 1.45 LINK O4 NAG E 2 C1 BMA E 3 1555 1555 1.45 LINK O4 NAG F 1 C1 NAG F 2 1555 1555 1.47 LINK O4 NAG G 1 C1 NAG G 2 1555 1555 1.46 LINK O4 NAG G 2 C1 BMA G 3 1555 1555 1.46 LINK O4 NAG H 1 C1 NAG H 2 1555 1555 1.45 LINK O4 NAG I 1 C1 NAG I 2 1555 1555 1.46 LINK O4 NAG I 2 C1 BMA I 3 1555 1555 1.48 LINK O4 NAG J 1 C1 NAG J 2 1555 1555 1.46 LINK O4 NAG K 1 C1 NAG K 2 1555 1555 1.44 LINK O4 NAG L 1 C1 NAG L 2 1555 1555 1.45 CISPEP 1 ASP D 28 PRO D 29 0 27.57 CRYST1 80.216 130.215 124.436 90.00 102.36 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012466 0.000000 0.002732 0.00000 SCALE2 0.000000 0.007680 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008227 0.00000