data_3JZ9 # _entry.id 3JZ9 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.287 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 3JZ9 RCSB RCSB055346 WWPDB D_1000055346 # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 3JZA _pdbx_database_related.details 'Crystal structure of human Rab1b in complex with the GEF domain of DrrA/SidM from Legionella pneumophila' _pdbx_database_related.content_type unspecified # _pdbx_database_status.entry_id 3JZ9 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2009-09-23 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Schoebel, S.' 1 'Oesterlin, L.K.' 2 'Blankenfeldt, W.' 3 'Goody, R.S.' 4 'Itzen, A.' 5 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary 'RabGDI displacement by DrrA from Legionella is a consequence of its guanine nucleotide exchange activity.' Mol.Cell 36 1060 1072 2009 MOCEFL US 1097-2765 2168 ? 20064470 10.1016/j.molcel.2009.11.014 1 'A bifunctional bacterial protein links GDI displacement to Rab1 activation.' Science 318 974 977 2007 SCIEAS US 0036-8075 0038 ? 17947549 10.1126/science.1149121 2 'Legionella pneumophila proteins that regulate Rab1 membrane cycling.' Nature 450 365 369 2007 NATUAS UK 0028-0836 0006 ? 17952054 10.1038/nature06336 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Schoebel, S.' 1 primary 'Oesterlin, L.K.' 2 primary 'Blankenfeldt, W.' 3 primary 'Goody, R.S.' 4 primary 'Itzen, A.' 5 1 'Machner, M.P.' 6 1 'Isberg, R.R.' 7 2 'Ingmundson, A.' 8 2 'Delprato, A.' 9 2 'Lambright, D.G.' 10 2 'Roy, C.R.' 11 # _cell.entry_id 3JZ9 _cell.length_a 126.338 _cell.length_b 126.338 _cell.length_c 35.925 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 120.000 _cell.pdbx_unique_axis ? _cell.Z_PDB 6 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3JZ9 _symmetry.space_group_name_H-M 'P 62' _symmetry.Int_Tables_number 171 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Uncharacterized protein DrrA' 22388.299 1 ? ? 'GEF domain: UNP residues 340-533' ? 2 water nat water 18.015 225 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;GH(MSE)VTRIENLENAKKLWDNANS(MSE)LEKGNISGYLKAANELHKF(MSE)KEKNLKEDDLRPELSDKTISPKGYA ILQSLWGAASDYSRAAATLTESTVEPGLVSAVNK(MSE)SAFF(MSE)DCKLSPNERATPDPDFKVGKSKILVGI(MSE) QFIKDVADPTSKIW(MSE)HNTKAL(MSE)NHKIAAIQKLERSNNVNDETLESVLSSKGENLSEYLSYK ; _entity_poly.pdbx_seq_one_letter_code_can ;GHMVTRIENLENAKKLWDNANSMLEKGNISGYLKAANELHKFMKEKNLKEDDLRPELSDKTISPKGYAILQSLWGAASDY SRAAATLTESTVEPGLVSAVNKMSAFFMDCKLSPNERATPDPDFKVGKSKILVGIMQFIKDVADPTSKIWMHNTKALMNH KIAAIQKLERSNNVNDETLESVLSSKGENLSEYLSYK ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 HIS n 1 3 MSE n 1 4 VAL n 1 5 THR n 1 6 ARG n 1 7 ILE n 1 8 GLU n 1 9 ASN n 1 10 LEU n 1 11 GLU n 1 12 ASN n 1 13 ALA n 1 14 LYS n 1 15 LYS n 1 16 LEU n 1 17 TRP n 1 18 ASP n 1 19 ASN n 1 20 ALA n 1 21 ASN n 1 22 SER n 1 23 MSE n 1 24 LEU n 1 25 GLU n 1 26 LYS n 1 27 GLY n 1 28 ASN n 1 29 ILE n 1 30 SER n 1 31 GLY n 1 32 TYR n 1 33 LEU n 1 34 LYS n 1 35 ALA n 1 36 ALA n 1 37 ASN n 1 38 GLU n 1 39 LEU n 1 40 HIS n 1 41 LYS n 1 42 PHE n 1 43 MSE n 1 44 LYS n 1 45 GLU n 1 46 LYS n 1 47 ASN n 1 48 LEU n 1 49 LYS n 1 50 GLU n 1 51 ASP n 1 52 ASP n 1 53 LEU n 1 54 ARG n 1 55 PRO n 1 56 GLU n 1 57 LEU n 1 58 SER n 1 59 ASP n 1 60 LYS n 1 61 THR n 1 62 ILE n 1 63 SER n 1 64 PRO n 1 65 LYS n 1 66 GLY n 1 67 TYR n 1 68 ALA n 1 69 ILE n 1 70 LEU n 1 71 GLN n 1 72 SER n 1 73 LEU n 1 74 TRP n 1 75 GLY n 1 76 ALA n 1 77 ALA n 1 78 SER n 1 79 ASP n 1 80 TYR n 1 81 SER n 1 82 ARG n 1 83 ALA n 1 84 ALA n 1 85 ALA n 1 86 THR n 1 87 LEU n 1 88 THR n 1 89 GLU n 1 90 SER n 1 91 THR n 1 92 VAL n 1 93 GLU n 1 94 PRO n 1 95 GLY n 1 96 LEU n 1 97 VAL n 1 98 SER n 1 99 ALA n 1 100 VAL n 1 101 ASN n 1 102 LYS n 1 103 MSE n 1 104 SER n 1 105 ALA n 1 106 PHE n 1 107 PHE n 1 108 MSE n 1 109 ASP n 1 110 CYS n 1 111 LYS n 1 112 LEU n 1 113 SER n 1 114 PRO n 1 115 ASN n 1 116 GLU n 1 117 ARG n 1 118 ALA n 1 119 THR n 1 120 PRO n 1 121 ASP n 1 122 PRO n 1 123 ASP n 1 124 PHE n 1 125 LYS n 1 126 VAL n 1 127 GLY n 1 128 LYS n 1 129 SER n 1 130 LYS n 1 131 ILE n 1 132 LEU n 1 133 VAL n 1 134 GLY n 1 135 ILE n 1 136 MSE n 1 137 GLN n 1 138 PHE n 1 139 ILE n 1 140 LYS n 1 141 ASP n 1 142 VAL n 1 143 ALA n 1 144 ASP n 1 145 PRO n 1 146 THR n 1 147 SER n 1 148 LYS n 1 149 ILE n 1 150 TRP n 1 151 MSE n 1 152 HIS n 1 153 ASN n 1 154 THR n 1 155 LYS n 1 156 ALA n 1 157 LEU n 1 158 MSE n 1 159 ASN n 1 160 HIS n 1 161 LYS n 1 162 ILE n 1 163 ALA n 1 164 ALA n 1 165 ILE n 1 166 GLN n 1 167 LYS n 1 168 LEU n 1 169 GLU n 1 170 ARG n 1 171 SER n 1 172 ASN n 1 173 ASN n 1 174 VAL n 1 175 ASN n 1 176 ASP n 1 177 GLU n 1 178 THR n 1 179 LEU n 1 180 GLU n 1 181 SER n 1 182 VAL n 1 183 LEU n 1 184 SER n 1 185 SER n 1 186 LYS n 1 187 GLY n 1 188 GLU n 1 189 ASN n 1 190 LEU n 1 191 SER n 1 192 GLU n 1 193 TYR n 1 194 LEU n 1 195 SER n 1 196 TYR n 1 197 LYS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene lpg2464 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain 'Philadelphia 1 / DSM 7513' _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Legionella pneumophila subsp. pneumophila str. Philadelphia 1' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 272624 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc 33152 _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)RIL' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET19mod_TEV _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q5ZSQ3_LEGPH _struct_ref.pdbx_db_accession Q5ZSQ3 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;VTRIENLENAKKLWDNANSMLEKGNISGYLKAANELHKFMKEKNLKEDDLRPELSDKTISPKGYAILQSLWGAASDYSRA AATLTESTVEPGLVSAVNKMSAFFMDCKLSPNERATPDPDFKVGKSKILVGIMQFIKDVADPTSKIWMHNTKALMNHKIA AIQKLERSNNVNDETLESVLSSKGENLSEYLSYK ; _struct_ref.pdbx_align_begin 340 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3JZ9 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 4 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 197 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q5ZSQ3 _struct_ref_seq.db_align_beg 340 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 533 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 340 _struct_ref_seq.pdbx_auth_seq_align_end 533 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3JZ9 GLY A 1 ? UNP Q5ZSQ3 ? ? 'EXPRESSION TAG' 337 1 1 3JZ9 HIS A 2 ? UNP Q5ZSQ3 ? ? 'EXPRESSION TAG' 338 2 1 3JZ9 MSE A 3 ? UNP Q5ZSQ3 ? ? 'EXPRESSION TAG' 339 3 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.entry_id 3JZ9 _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_percent_sol 66.73 _exptl_crystal.density_Matthews 3.70 _exptl_crystal.density_meas ? _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.pH ? _exptl_crystal_grow.temp 292 _exptl_crystal_grow.pdbx_details '0.25 M Sodium sulfate, 21% w/v PEG 3350, VAPOR DIFFUSION, HANGING DROP, temperature 292K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 225 mm CCD' _diffrn_detector.pdbx_collection_date 2009-04-04 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator 'Si(111)' _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.007490 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SLS BEAMLINE X10SA' _diffrn_source.pdbx_wavelength_list 1.007490 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site SLS _diffrn_source.pdbx_synchrotron_beamline X10SA # _reflns.entry_id 3JZ9 _reflns.d_resolution_high 1.80 _reflns.number_obs 30729 _reflns.pdbx_Rmerge_I_obs 0.059 _reflns.pdbx_netI_over_sigmaI 21.280 _reflns.percent_possible_obs 99.700 _reflns.B_iso_Wilson_estimate 27.569 _reflns.observed_criterion_sigma_I -3.00 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 30.0 _reflns.number_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 1.80 1.90 24775 ? 4518 0.462 4.0 ? ? ? ? ? 99.30 1 1 1.90 2.00 20670 ? 3690 0.315 5.8 ? ? ? ? ? 99.40 2 1 2.00 2.20 32159 ? 5509 0.173 10.2 ? ? ? ? ? 99.70 3 1 2.20 2.50 32932 ? 5333 0.110 16.1 ? ? ? ? ? 99.80 4 1 2.50 3.00 30248 ? 4883 0.064 25.2 ? ? ? ? ? 99.90 5 1 3.00 3.50 15122 ? 2451 0.039 38.7 ? ? ? ? ? 100.00 6 1 3.50 4.00 8618 ? 1420 0.028 51.4 ? ? ? ? ? 100.00 7 1 4.00 5.00 8623 ? 1404 0.023 60.1 ? ? ? ? ? 100.00 8 1 5.00 7.00 5754 ? 950 0.023 58.4 ? ? ? ? ? 99.90 9 1 7.00 10.00 2147 ? 366 0.017 71.3 ? ? ? ? ? 100.00 10 1 10.00 15.00 784 ? 139 0.014 76.8 ? ? ? ? ? 99.30 11 1 15.00 25.00 268 ? 52 0.019 69.1 ? ? ? ? ? 100.00 12 1 25.00 30.00 32 ? 6 0.023 81.9 ? ? ? ? ? 100.00 13 1 # _refine.entry_id 3JZ9 _refine.ls_d_res_high 1.80 _refine.ls_d_res_low 27.35 _refine.pdbx_ls_sigma_F 0.00 _refine.ls_percent_reflns_obs 99.720 _refine.ls_number_reflns_obs 30721 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details '1. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. 2. U VALUES: RESIDUAL ONLY.' _refine.ls_R_factor_obs 0.170 _refine.ls_R_factor_R_work 0.169 _refine.ls_R_factor_R_free 0.198 _refine.ls_percent_reflns_R_free 5.000 _refine.ls_number_reflns_R_free 1544 _refine.B_iso_mean 13.641 _refine.aniso_B[1][1] 0.620 _refine.aniso_B[2][2] 0.620 _refine.aniso_B[3][3] -0.930 _refine.aniso_B[1][2] 0.310 _refine.aniso_B[1][3] 0.000 _refine.aniso_B[2][3] 0.000 _refine.correlation_coeff_Fo_to_Fc 0.961 _refine.correlation_coeff_Fo_to_Fc_free 0.953 _refine.pdbx_overall_ESU_R 0.088 _refine.pdbx_overall_ESU_R_Free 0.090 _refine.overall_SU_ML 0.061 _refine.overall_SU_B 4.449 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.pdbx_solvent_vdw_probe_radii 1.400 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.pdbx_method_to_determine_struct 'FOURIER SYNTHESIS' _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_ls_sigma_I ? _refine.ls_number_reflns_all ? _refine.ls_R_factor_all ? _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_starting_model ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_isotropic_thermal_model ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1529 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 225 _refine_hist.number_atoms_total 1754 _refine_hist.d_res_high 1.80 _refine_hist.d_res_low 27.35 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 1592 0.034 0.022 ? 'X-RAY DIFFRACTION' ? r_bond_other_d 1093 0.001 0.020 ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 2154 2.304 1.969 ? 'X-RAY DIFFRACTION' ? r_angle_other_deg 2705 1.216 3.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 208 6.252 5.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 69 36.666 25.942 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 309 15.546 15.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 6 26.096 15.000 ? 'X-RAY DIFFRACTION' ? r_chiral_restr 243 0.162 0.200 ? 'X-RAY DIFFRACTION' ? r_gen_planes_refined 1760 0.011 0.020 ? 'X-RAY DIFFRACTION' ? r_gen_planes_other 283 0.001 0.020 ? 'X-RAY DIFFRACTION' ? r_mcbond_it 1000 1.502 1.500 ? 'X-RAY DIFFRACTION' ? r_mcbond_other 401 0.538 1.500 ? 'X-RAY DIFFRACTION' ? r_mcangle_it 1612 2.473 2.000 ? 'X-RAY DIFFRACTION' ? r_scbond_it 592 4.408 3.000 ? 'X-RAY DIFFRACTION' ? r_scangle_it 536 6.344 4.500 ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.d_res_high 1.800 _refine_ls_shell.d_res_low 1.847 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 99.910 _refine_ls_shell.number_reflns_R_work 2125 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.224 _refine_ls_shell.R_factor_R_free 0.262 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 102 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 2227 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3JZ9 _struct.title 'Crystal structure of the GEF domain of DrrA/SidM from Legionella pneumophila' _struct.pdbx_descriptor 'Uncharacterized protein DrrA' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3JZ9 _struct_keywords.text 'RabGDI, RabGEF, GDI, GEF, GDF, GDI displacement factor, TRANSPORT PROTEIN' _struct_keywords.pdbx_keywords 'TRANSPORT PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_biol.id 1 _struct_biol.details 'Biological unit is the same as asymmetric unit.' # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLY A 1 ? LYS A 26 ? GLY A 337 LYS A 362 1 ? 26 HELX_P HELX_P2 2 ASN A 28 ? LYS A 46 ? ASN A 364 LYS A 382 1 ? 19 HELX_P HELX_P3 3 LYS A 49 ? ARG A 54 ? LYS A 385 ARG A 390 1 ? 6 HELX_P HELX_P4 4 PRO A 55 ? SER A 58 ? PRO A 391 SER A 394 5 ? 4 HELX_P HELX_P5 5 SER A 63 ? ALA A 84 ? SER A 399 ALA A 420 1 ? 22 HELX_P HELX_P6 6 THR A 91 ? LEU A 112 ? THR A 427 LEU A 448 1 ? 22 HELX_P HELX_P7 7 GLY A 127 ? ALA A 143 ? GLY A 463 ALA A 479 1 ? 17 HELX_P HELX_P8 8 THR A 154 ? SER A 171 ? THR A 490 SER A 507 1 ? 18 HELX_P HELX_P9 9 ASN A 175 ? SER A 185 ? ASN A 511 SER A 521 1 ? 11 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? A HIS 2 C ? ? ? 1_555 A MSE 3 N ? ? A HIS 338 A MSE 339 1_555 ? ? ? ? ? ? ? 1.357 ? covale2 covale ? ? A MSE 3 C ? ? ? 1_555 A VAL 4 N ? ? A MSE 339 A VAL 340 1_555 ? ? ? ? ? ? ? 1.347 ? covale3 covale ? ? A SER 22 C ? ? ? 1_555 A MSE 23 N ? ? A SER 358 A MSE 359 1_555 ? ? ? ? ? ? ? 1.314 ? covale4 covale ? ? A MSE 23 C ? ? ? 1_555 A LEU 24 N ? ? A MSE 359 A LEU 360 1_555 ? ? ? ? ? ? ? 1.333 ? covale5 covale ? ? A PHE 42 C ? ? ? 1_555 A MSE 43 N ? ? A PHE 378 A MSE 379 1_555 ? ? ? ? ? ? ? 1.316 ? covale6 covale ? ? A MSE 43 C ? ? ? 1_555 A LYS 44 N ? ? A MSE 379 A LYS 380 1_555 ? ? ? ? ? ? ? 1.344 ? covale7 covale ? ? A LYS 102 C ? ? ? 1_555 A MSE 103 N ? ? A LYS 438 A MSE 439 1_555 ? ? ? ? ? ? ? 1.309 ? covale8 covale ? ? A MSE 103 C ? ? ? 1_555 A SER 104 N ? ? A MSE 439 A SER 440 1_555 ? ? ? ? ? ? ? 1.327 ? covale9 covale ? ? A PHE 107 C ? ? ? 1_555 A MSE 108 N ? ? A PHE 443 A MSE 444 1_555 ? ? ? ? ? ? ? 1.325 ? covale10 covale ? ? A MSE 108 C ? ? ? 1_555 A ASP 109 N ? ? A MSE 444 A ASP 445 1_555 ? ? ? ? ? ? ? 1.321 ? covale11 covale ? ? A ILE 135 C ? ? ? 1_555 A MSE 136 N ? ? A ILE 471 A MSE 472 1_555 ? ? ? ? ? ? ? 1.325 ? covale12 covale ? ? A MSE 136 C ? ? ? 1_555 A GLN 137 N ? ? A MSE 472 A GLN 473 1_555 ? ? ? ? ? ? ? 1.315 ? covale13 covale ? ? A TRP 150 C ? ? ? 1_555 A MSE 151 N ? ? A TRP 486 A MSE 487 1_555 ? ? ? ? ? ? ? 1.310 ? covale14 covale ? ? A MSE 151 C ? ? ? 1_555 A HIS 152 N ? ? A MSE 487 A HIS 488 1_555 ? ? ? ? ? ? ? 1.346 ? covale15 covale ? ? A LEU 157 C ? ? ? 1_555 A MSE 158 N ? ? A LEU 493 A MSE 494 1_555 ? ? ? ? ? ? ? 1.314 ? covale16 covale ? ? A MSE 158 C ? ? ? 1_555 A ASN 159 N ? ? A MSE 494 A ASN 495 1_555 ? ? ? ? ? ? ? 1.344 ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 2 _struct_sheet.details ? # _struct_sheet_order.sheet_id A _struct_sheet_order.range_id_1 1 _struct_sheet_order.range_id_2 2 _struct_sheet_order.offset ? _struct_sheet_order.sense anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 LYS A 148 ? ILE A 149 ? LYS A 484 ILE A 485 A 2 HIS A 152 ? ASN A 153 ? HIS A 488 ASN A 489 # _pdbx_struct_sheet_hbond.sheet_id A _pdbx_struct_sheet_hbond.range_id_1 1 _pdbx_struct_sheet_hbond.range_id_2 2 _pdbx_struct_sheet_hbond.range_1_label_atom_id N _pdbx_struct_sheet_hbond.range_1_label_comp_id ILE _pdbx_struct_sheet_hbond.range_1_label_asym_id A _pdbx_struct_sheet_hbond.range_1_label_seq_id 149 _pdbx_struct_sheet_hbond.range_1_PDB_ins_code ? _pdbx_struct_sheet_hbond.range_1_auth_atom_id N _pdbx_struct_sheet_hbond.range_1_auth_comp_id ILE _pdbx_struct_sheet_hbond.range_1_auth_asym_id A _pdbx_struct_sheet_hbond.range_1_auth_seq_id 485 _pdbx_struct_sheet_hbond.range_2_label_atom_id O _pdbx_struct_sheet_hbond.range_2_label_comp_id HIS _pdbx_struct_sheet_hbond.range_2_label_asym_id A _pdbx_struct_sheet_hbond.range_2_label_seq_id 152 _pdbx_struct_sheet_hbond.range_2_PDB_ins_code ? _pdbx_struct_sheet_hbond.range_2_auth_atom_id O _pdbx_struct_sheet_hbond.range_2_auth_comp_id HIS _pdbx_struct_sheet_hbond.range_2_auth_asym_id A _pdbx_struct_sheet_hbond.range_2_auth_seq_id 488 # _database_PDB_matrix.entry_id 3JZ9 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.000000 _database_PDB_matrix.origx_vector[2] 0.000000 _database_PDB_matrix.origx_vector[3] 0.000000 # _atom_sites.entry_id 3JZ9 _atom_sites.fract_transf_matrix[1][1] 0.007915 _atom_sites.fract_transf_matrix[1][2] 0.004570 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.009140 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.027836 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 337 337 GLY GLY A . n A 1 2 HIS 2 338 338 HIS HIS A . n A 1 3 MSE 3 339 339 MSE MSE A . n A 1 4 VAL 4 340 340 VAL VAL A . n A 1 5 THR 5 341 341 THR THR A . n A 1 6 ARG 6 342 342 ARG ARG A . n A 1 7 ILE 7 343 343 ILE ILE A . n A 1 8 GLU 8 344 344 GLU GLU A . n A 1 9 ASN 9 345 345 ASN ASN A . n A 1 10 LEU 10 346 346 LEU LEU A . n A 1 11 GLU 11 347 347 GLU GLU A . n A 1 12 ASN 12 348 348 ASN ASN A . n A 1 13 ALA 13 349 349 ALA ALA A . n A 1 14 LYS 14 350 350 LYS LYS A . n A 1 15 LYS 15 351 351 LYS LYS A . n A 1 16 LEU 16 352 352 LEU LEU A . n A 1 17 TRP 17 353 353 TRP TRP A . n A 1 18 ASP 18 354 354 ASP ASP A . n A 1 19 ASN 19 355 355 ASN ASN A . n A 1 20 ALA 20 356 356 ALA ALA A . n A 1 21 ASN 21 357 357 ASN ASN A . n A 1 22 SER 22 358 358 SER SER A . n A 1 23 MSE 23 359 359 MSE MSE A . n A 1 24 LEU 24 360 360 LEU LEU A . n A 1 25 GLU 25 361 361 GLU GLU A . n A 1 26 LYS 26 362 362 LYS LYS A . n A 1 27 GLY 27 363 363 GLY GLY A . n A 1 28 ASN 28 364 364 ASN ASN A . n A 1 29 ILE 29 365 365 ILE ILE A . n A 1 30 SER 30 366 366 SER SER A . n A 1 31 GLY 31 367 367 GLY GLY A . n A 1 32 TYR 32 368 368 TYR TYR A . n A 1 33 LEU 33 369 369 LEU LEU A . n A 1 34 LYS 34 370 370 LYS LYS A . n A 1 35 ALA 35 371 371 ALA ALA A . n A 1 36 ALA 36 372 372 ALA ALA A . n A 1 37 ASN 37 373 373 ASN ASN A . n A 1 38 GLU 38 374 374 GLU GLU A . n A 1 39 LEU 39 375 375 LEU LEU A . n A 1 40 HIS 40 376 376 HIS HIS A . n A 1 41 LYS 41 377 377 LYS LYS A . n A 1 42 PHE 42 378 378 PHE PHE A . n A 1 43 MSE 43 379 379 MSE MSE A . n A 1 44 LYS 44 380 380 LYS LYS A . n A 1 45 GLU 45 381 381 GLU GLU A . n A 1 46 LYS 46 382 382 LYS LYS A . n A 1 47 ASN 47 383 383 ASN ASN A . n A 1 48 LEU 48 384 384 LEU LEU A . n A 1 49 LYS 49 385 385 LYS LYS A . n A 1 50 GLU 50 386 386 GLU GLU A . n A 1 51 ASP 51 387 387 ASP ASP A . n A 1 52 ASP 52 388 388 ASP ASP A . n A 1 53 LEU 53 389 389 LEU LEU A . n A 1 54 ARG 54 390 390 ARG ARG A . n A 1 55 PRO 55 391 391 PRO PRO A . n A 1 56 GLU 56 392 392 GLU GLU A . n A 1 57 LEU 57 393 393 LEU LEU A . n A 1 58 SER 58 394 394 SER SER A . n A 1 59 ASP 59 395 395 ASP ASP A . n A 1 60 LYS 60 396 396 LYS LYS A . n A 1 61 THR 61 397 397 THR THR A . n A 1 62 ILE 62 398 398 ILE ILE A . n A 1 63 SER 63 399 399 SER SER A . n A 1 64 PRO 64 400 400 PRO PRO A . n A 1 65 LYS 65 401 401 LYS LYS A . n A 1 66 GLY 66 402 402 GLY GLY A . n A 1 67 TYR 67 403 403 TYR TYR A . n A 1 68 ALA 68 404 404 ALA ALA A . n A 1 69 ILE 69 405 405 ILE ILE A . n A 1 70 LEU 70 406 406 LEU LEU A . n A 1 71 GLN 71 407 407 GLN GLN A . n A 1 72 SER 72 408 408 SER SER A . n A 1 73 LEU 73 409 409 LEU LEU A . n A 1 74 TRP 74 410 410 TRP TRP A . n A 1 75 GLY 75 411 411 GLY GLY A . n A 1 76 ALA 76 412 412 ALA ALA A . n A 1 77 ALA 77 413 413 ALA ALA A . n A 1 78 SER 78 414 414 SER SER A . n A 1 79 ASP 79 415 415 ASP ASP A . n A 1 80 TYR 80 416 416 TYR TYR A . n A 1 81 SER 81 417 417 SER SER A . n A 1 82 ARG 82 418 418 ARG ARG A . n A 1 83 ALA 83 419 419 ALA ALA A . n A 1 84 ALA 84 420 420 ALA ALA A . n A 1 85 ALA 85 421 421 ALA ALA A . n A 1 86 THR 86 422 422 THR THR A . n A 1 87 LEU 87 423 423 LEU LEU A . n A 1 88 THR 88 424 424 THR THR A . n A 1 89 GLU 89 425 425 GLU GLU A . n A 1 90 SER 90 426 426 SER SER A . n A 1 91 THR 91 427 427 THR THR A . n A 1 92 VAL 92 428 428 VAL VAL A . n A 1 93 GLU 93 429 429 GLU GLU A . n A 1 94 PRO 94 430 430 PRO PRO A . n A 1 95 GLY 95 431 431 GLY GLY A . n A 1 96 LEU 96 432 432 LEU LEU A . n A 1 97 VAL 97 433 433 VAL VAL A . n A 1 98 SER 98 434 434 SER SER A . n A 1 99 ALA 99 435 435 ALA ALA A . n A 1 100 VAL 100 436 436 VAL VAL A . n A 1 101 ASN 101 437 437 ASN ASN A . n A 1 102 LYS 102 438 438 LYS LYS A . n A 1 103 MSE 103 439 439 MSE MSE A . n A 1 104 SER 104 440 440 SER SER A . n A 1 105 ALA 105 441 441 ALA ALA A . n A 1 106 PHE 106 442 442 PHE PHE A . n A 1 107 PHE 107 443 443 PHE PHE A . n A 1 108 MSE 108 444 444 MSE MSE A . n A 1 109 ASP 109 445 445 ASP ASP A . n A 1 110 CYS 110 446 446 CYS CYS A . n A 1 111 LYS 111 447 447 LYS LYS A . n A 1 112 LEU 112 448 448 LEU LEU A . n A 1 113 SER 113 449 449 SER SER A . n A 1 114 PRO 114 450 450 PRO PRO A . n A 1 115 ASN 115 451 451 ASN ASN A . n A 1 116 GLU 116 452 452 GLU GLU A . n A 1 117 ARG 117 453 453 ARG ARG A . n A 1 118 ALA 118 454 454 ALA ALA A . n A 1 119 THR 119 455 455 THR THR A . n A 1 120 PRO 120 456 456 PRO PRO A . n A 1 121 ASP 121 457 457 ASP ASP A . n A 1 122 PRO 122 458 458 PRO PRO A . n A 1 123 ASP 123 459 459 ASP ASP A . n A 1 124 PHE 124 460 460 PHE PHE A . n A 1 125 LYS 125 461 461 LYS LYS A . n A 1 126 VAL 126 462 462 VAL VAL A . n A 1 127 GLY 127 463 463 GLY GLY A . n A 1 128 LYS 128 464 464 LYS LYS A . n A 1 129 SER 129 465 465 SER SER A . n A 1 130 LYS 130 466 466 LYS LYS A . n A 1 131 ILE 131 467 467 ILE ILE A . n A 1 132 LEU 132 468 468 LEU LEU A . n A 1 133 VAL 133 469 469 VAL VAL A . n A 1 134 GLY 134 470 470 GLY GLY A . n A 1 135 ILE 135 471 471 ILE ILE A . n A 1 136 MSE 136 472 472 MSE MSE A . n A 1 137 GLN 137 473 473 GLN GLN A . n A 1 138 PHE 138 474 474 PHE PHE A . n A 1 139 ILE 139 475 475 ILE ILE A . n A 1 140 LYS 140 476 476 LYS LYS A . n A 1 141 ASP 141 477 477 ASP ASP A . n A 1 142 VAL 142 478 478 VAL VAL A . n A 1 143 ALA 143 479 479 ALA ALA A . n A 1 144 ASP 144 480 480 ASP ASP A . n A 1 145 PRO 145 481 481 PRO PRO A . n A 1 146 THR 146 482 482 THR THR A . n A 1 147 SER 147 483 483 SER SER A . n A 1 148 LYS 148 484 484 LYS LYS A . n A 1 149 ILE 149 485 485 ILE ILE A . n A 1 150 TRP 150 486 486 TRP TRP A . n A 1 151 MSE 151 487 487 MSE MSE A . n A 1 152 HIS 152 488 488 HIS HIS A . n A 1 153 ASN 153 489 489 ASN ASN A . n A 1 154 THR 154 490 490 THR THR A . n A 1 155 LYS 155 491 491 LYS LYS A . n A 1 156 ALA 156 492 492 ALA ALA A . n A 1 157 LEU 157 493 493 LEU LEU A . n A 1 158 MSE 158 494 494 MSE MSE A . n A 1 159 ASN 159 495 495 ASN ASN A . n A 1 160 HIS 160 496 496 HIS HIS A . n A 1 161 LYS 161 497 497 LYS LYS A . n A 1 162 ILE 162 498 498 ILE ILE A . n A 1 163 ALA 163 499 499 ALA ALA A . n A 1 164 ALA 164 500 500 ALA ALA A . n A 1 165 ILE 165 501 501 ILE ILE A . n A 1 166 GLN 166 502 502 GLN GLN A . n A 1 167 LYS 167 503 503 LYS LYS A . n A 1 168 LEU 168 504 504 LEU LEU A . n A 1 169 GLU 169 505 505 GLU GLU A . n A 1 170 ARG 170 506 506 ARG ARG A . n A 1 171 SER 171 507 507 SER SER A . n A 1 172 ASN 172 508 508 ASN ASN A . n A 1 173 ASN 173 509 509 ASN ASN A . n A 1 174 VAL 174 510 510 VAL VAL A . n A 1 175 ASN 175 511 511 ASN ASN A . n A 1 176 ASP 176 512 512 ASP ASP A . n A 1 177 GLU 177 513 513 GLU GLU A . n A 1 178 THR 178 514 514 THR THR A . n A 1 179 LEU 179 515 515 LEU LEU A . n A 1 180 GLU 180 516 516 GLU GLU A . n A 1 181 SER 181 517 517 SER SER A . n A 1 182 VAL 182 518 518 VAL VAL A . n A 1 183 LEU 183 519 519 LEU LEU A . n A 1 184 SER 184 520 520 SER SER A . n A 1 185 SER 185 521 521 SER SER A . n A 1 186 LYS 186 522 522 LYS LYS A . n A 1 187 GLY 187 523 523 GLY GLY A . n A 1 188 GLU 188 524 524 GLU GLU A . n A 1 189 ASN 189 525 525 ASN ASN A . n A 1 190 LEU 190 526 526 LEU LEU A . n A 1 191 SER 191 527 527 SER SER A . n A 1 192 GLU 192 528 528 GLU GLU A . n A 1 193 TYR 193 529 529 TYR TYR A . n A 1 194 LEU 194 530 530 LEU LEU A . n A 1 195 SER 195 531 531 SER SER A . n A 1 196 TYR 196 532 532 TYR TYR A . n A 1 197 LYS 197 533 533 LYS LYS A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HOH 1 1 1 HOH HOH A . B 2 HOH 2 2 2 HOH HOH A . B 2 HOH 3 3 3 HOH HOH A . B 2 HOH 4 4 4 HOH HOH A . B 2 HOH 5 5 5 HOH HOH A . B 2 HOH 6 6 6 HOH HOH A . B 2 HOH 7 7 7 HOH HOH A . B 2 HOH 8 8 8 HOH HOH A . B 2 HOH 9 9 9 HOH HOH A . B 2 HOH 10 10 10 HOH HOH A . B 2 HOH 11 11 11 HOH HOH A . B 2 HOH 12 12 12 HOH HOH A . B 2 HOH 13 13 13 HOH HOH A . B 2 HOH 14 14 14 HOH HOH A . B 2 HOH 15 15 15 HOH HOH A . B 2 HOH 16 16 16 HOH HOH A . B 2 HOH 17 17 17 HOH HOH A . B 2 HOH 18 18 18 HOH HOH A . B 2 HOH 19 19 19 HOH HOH A . B 2 HOH 20 20 20 HOH HOH A . B 2 HOH 21 21 21 HOH HOH A . B 2 HOH 22 22 22 HOH HOH A . B 2 HOH 23 23 23 HOH HOH A . B 2 HOH 24 24 24 HOH HOH A . B 2 HOH 25 25 25 HOH HOH A . B 2 HOH 26 26 26 HOH HOH A . B 2 HOH 27 27 27 HOH HOH A . B 2 HOH 28 28 28 HOH HOH A . B 2 HOH 29 29 29 HOH HOH A . B 2 HOH 30 30 30 HOH HOH A . B 2 HOH 31 31 31 HOH HOH A . B 2 HOH 32 32 32 HOH HOH A . B 2 HOH 33 33 33 HOH HOH A . B 2 HOH 34 34 34 HOH HOH A . B 2 HOH 35 35 35 HOH HOH A . B 2 HOH 36 36 36 HOH HOH A . B 2 HOH 37 37 37 HOH HOH A . B 2 HOH 38 38 38 HOH HOH A . B 2 HOH 39 39 39 HOH HOH A . B 2 HOH 40 40 40 HOH HOH A . B 2 HOH 41 41 41 HOH HOH A . B 2 HOH 42 42 42 HOH HOH A . B 2 HOH 43 43 43 HOH HOH A . B 2 HOH 44 44 44 HOH HOH A . B 2 HOH 45 45 45 HOH HOH A . B 2 HOH 46 46 46 HOH HOH A . B 2 HOH 47 47 47 HOH HOH A . B 2 HOH 48 48 48 HOH HOH A . B 2 HOH 49 49 49 HOH HOH A . B 2 HOH 50 50 50 HOH HOH A . B 2 HOH 51 51 51 HOH HOH A . B 2 HOH 52 52 52 HOH HOH A . B 2 HOH 53 53 53 HOH HOH A . B 2 HOH 54 54 54 HOH HOH A . B 2 HOH 55 55 55 HOH HOH A . B 2 HOH 56 56 56 HOH HOH A . B 2 HOH 57 57 57 HOH HOH A . B 2 HOH 58 58 58 HOH HOH A . B 2 HOH 59 59 59 HOH HOH A . B 2 HOH 60 60 60 HOH HOH A . B 2 HOH 61 61 61 HOH HOH A . B 2 HOH 62 62 62 HOH HOH A . B 2 HOH 63 63 63 HOH HOH A . B 2 HOH 64 64 64 HOH HOH A . B 2 HOH 65 65 65 HOH HOH A . B 2 HOH 66 66 66 HOH HOH A . B 2 HOH 67 67 67 HOH HOH A . B 2 HOH 68 68 68 HOH HOH A . B 2 HOH 69 69 69 HOH HOH A . B 2 HOH 70 70 70 HOH HOH A . B 2 HOH 71 71 71 HOH HOH A . B 2 HOH 72 72 72 HOH HOH A . B 2 HOH 73 73 73 HOH HOH A . B 2 HOH 74 74 74 HOH HOH A . B 2 HOH 75 75 75 HOH HOH A . B 2 HOH 76 76 76 HOH HOH A . B 2 HOH 77 77 77 HOH HOH A . B 2 HOH 78 78 78 HOH HOH A . B 2 HOH 79 79 79 HOH HOH A . B 2 HOH 80 80 80 HOH HOH A . B 2 HOH 81 81 81 HOH HOH A . B 2 HOH 82 82 82 HOH HOH A . B 2 HOH 83 83 83 HOH HOH A . B 2 HOH 84 84 84 HOH HOH A . B 2 HOH 85 85 85 HOH HOH A . B 2 HOH 86 86 86 HOH HOH A . B 2 HOH 87 87 87 HOH HOH A . B 2 HOH 88 88 88 HOH HOH A . B 2 HOH 89 89 89 HOH HOH A . B 2 HOH 90 90 90 HOH HOH A . B 2 HOH 91 91 91 HOH HOH A . B 2 HOH 92 92 92 HOH HOH A . B 2 HOH 93 93 93 HOH HOH A . B 2 HOH 94 94 94 HOH HOH A . B 2 HOH 95 95 95 HOH HOH A . B 2 HOH 96 96 96 HOH HOH A . B 2 HOH 97 97 97 HOH HOH A . B 2 HOH 98 98 98 HOH HOH A . B 2 HOH 99 99 99 HOH HOH A . B 2 HOH 100 100 100 HOH HOH A . B 2 HOH 101 101 101 HOH HOH A . B 2 HOH 102 102 102 HOH HOH A . B 2 HOH 103 103 103 HOH HOH A . B 2 HOH 104 104 104 HOH HOH A . B 2 HOH 105 105 105 HOH HOH A . B 2 HOH 106 106 106 HOH HOH A . B 2 HOH 107 107 107 HOH HOH A . B 2 HOH 108 108 108 HOH HOH A . B 2 HOH 109 109 109 HOH HOH A . B 2 HOH 110 110 110 HOH HOH A . B 2 HOH 111 111 111 HOH HOH A . B 2 HOH 112 112 112 HOH HOH A . B 2 HOH 113 113 113 HOH HOH A . B 2 HOH 114 114 114 HOH HOH A . B 2 HOH 115 115 115 HOH HOH A . B 2 HOH 116 116 116 HOH HOH A . B 2 HOH 117 117 117 HOH HOH A . B 2 HOH 118 118 118 HOH HOH A . B 2 HOH 119 119 119 HOH HOH A . B 2 HOH 120 120 120 HOH HOH A . B 2 HOH 121 121 121 HOH HOH A . B 2 HOH 122 122 122 HOH HOH A . B 2 HOH 123 123 123 HOH HOH A . B 2 HOH 124 124 124 HOH HOH A . B 2 HOH 125 125 125 HOH HOH A . B 2 HOH 126 126 126 HOH HOH A . B 2 HOH 127 127 127 HOH HOH A . B 2 HOH 128 128 128 HOH HOH A . B 2 HOH 129 129 129 HOH HOH A . B 2 HOH 130 130 130 HOH HOH A . B 2 HOH 131 131 131 HOH HOH A . B 2 HOH 132 132 132 HOH HOH A . B 2 HOH 133 133 133 HOH HOH A . B 2 HOH 134 134 134 HOH HOH A . B 2 HOH 135 135 135 HOH HOH A . B 2 HOH 136 136 136 HOH HOH A . B 2 HOH 137 137 137 HOH HOH A . B 2 HOH 138 138 138 HOH HOH A . B 2 HOH 139 139 139 HOH HOH A . B 2 HOH 140 140 140 HOH HOH A . B 2 HOH 141 141 141 HOH HOH A . B 2 HOH 142 142 142 HOH HOH A . B 2 HOH 143 143 143 HOH HOH A . B 2 HOH 144 144 144 HOH HOH A . B 2 HOH 145 145 145 HOH HOH A . B 2 HOH 146 146 146 HOH HOH A . B 2 HOH 147 147 147 HOH HOH A . B 2 HOH 148 148 148 HOH HOH A . B 2 HOH 149 149 149 HOH HOH A . B 2 HOH 150 150 150 HOH HOH A . B 2 HOH 151 151 151 HOH HOH A . B 2 HOH 152 152 152 HOH HOH A . B 2 HOH 153 153 153 HOH HOH A . B 2 HOH 154 154 154 HOH HOH A . B 2 HOH 155 155 155 HOH HOH A . B 2 HOH 156 156 156 HOH HOH A . B 2 HOH 157 157 157 HOH HOH A . B 2 HOH 158 158 158 HOH HOH A . B 2 HOH 159 159 159 HOH HOH A . B 2 HOH 160 160 160 HOH HOH A . B 2 HOH 161 161 161 HOH HOH A . B 2 HOH 162 162 162 HOH HOH A . B 2 HOH 163 163 163 HOH HOH A . B 2 HOH 164 164 164 HOH HOH A . B 2 HOH 165 165 165 HOH HOH A . B 2 HOH 166 166 166 HOH HOH A . B 2 HOH 167 167 167 HOH HOH A . B 2 HOH 168 168 168 HOH HOH A . B 2 HOH 169 169 169 HOH HOH A . B 2 HOH 170 170 170 HOH HOH A . B 2 HOH 171 171 171 HOH HOH A . B 2 HOH 172 172 172 HOH HOH A . B 2 HOH 173 173 173 HOH HOH A . B 2 HOH 174 174 174 HOH HOH A . B 2 HOH 175 175 175 HOH HOH A . B 2 HOH 176 176 176 HOH HOH A . B 2 HOH 177 177 177 HOH HOH A . B 2 HOH 178 178 178 HOH HOH A . B 2 HOH 179 179 179 HOH HOH A . B 2 HOH 180 180 180 HOH HOH A . B 2 HOH 181 181 181 HOH HOH A . B 2 HOH 182 182 182 HOH HOH A . B 2 HOH 183 183 183 HOH HOH A . B 2 HOH 184 184 184 HOH HOH A . B 2 HOH 185 185 185 HOH HOH A . B 2 HOH 186 186 186 HOH HOH A . B 2 HOH 187 187 187 HOH HOH A . B 2 HOH 188 188 188 HOH HOH A . B 2 HOH 189 189 189 HOH HOH A . B 2 HOH 190 190 190 HOH HOH A . B 2 HOH 191 191 191 HOH HOH A . B 2 HOH 192 192 192 HOH HOH A . B 2 HOH 193 193 193 HOH HOH A . B 2 HOH 194 194 194 HOH HOH A . B 2 HOH 195 195 195 HOH HOH A . B 2 HOH 196 196 196 HOH HOH A . B 2 HOH 197 197 197 HOH HOH A . B 2 HOH 198 198 198 HOH HOH A . B 2 HOH 199 199 199 HOH HOH A . B 2 HOH 200 200 200 HOH HOH A . B 2 HOH 201 201 201 HOH HOH A . B 2 HOH 202 202 202 HOH HOH A . B 2 HOH 203 203 203 HOH HOH A . B 2 HOH 204 204 204 HOH HOH A . B 2 HOH 205 205 205 HOH HOH A . B 2 HOH 206 206 206 HOH HOH A . B 2 HOH 207 207 207 HOH HOH A . B 2 HOH 208 208 208 HOH HOH A . B 2 HOH 209 209 209 HOH HOH A . B 2 HOH 210 210 210 HOH HOH A . B 2 HOH 211 211 211 HOH HOH A . B 2 HOH 212 212 212 HOH HOH A . B 2 HOH 213 213 213 HOH HOH A . B 2 HOH 214 214 214 HOH HOH A . B 2 HOH 215 215 215 HOH HOH A . B 2 HOH 216 216 216 HOH HOH A . B 2 HOH 217 217 217 HOH HOH A . B 2 HOH 218 218 218 HOH HOH A . B 2 HOH 219 219 219 HOH HOH A . B 2 HOH 220 220 220 HOH HOH A . B 2 HOH 221 221 221 HOH HOH A . B 2 HOH 222 222 222 HOH HOH A . B 2 HOH 223 223 223 HOH HOH A . B 2 HOH 224 224 224 HOH HOH A . B 2 HOH 225 225 225 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 3 A MSE 339 ? MET SELENOMETHIONINE 2 A MSE 23 A MSE 359 ? MET SELENOMETHIONINE 3 A MSE 43 A MSE 379 ? MET SELENOMETHIONINE 4 A MSE 103 A MSE 439 ? MET SELENOMETHIONINE 5 A MSE 108 A MSE 444 ? MET SELENOMETHIONINE 6 A MSE 136 A MSE 472 ? MET SELENOMETHIONINE 7 A MSE 151 A MSE 487 ? MET SELENOMETHIONINE 8 A MSE 158 A MSE 494 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id A _pdbx_struct_special_symmetry.auth_comp_id HOH _pdbx_struct_special_symmetry.auth_seq_id 34 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id B _pdbx_struct_special_symmetry.label_comp_id HOH _pdbx_struct_special_symmetry.label_seq_id . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2010-01-19 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2017-11-01 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Advisory 2 2 'Structure model' 'Refinement description' 3 2 'Structure model' 'Version format compliance' 4 3 'Structure model' 'Refinement description' # _pdbx_audit_revision_category.ordinal 1 _pdbx_audit_revision_category.revision_ordinal 3 _pdbx_audit_revision_category.data_content_type 'Structure model' _pdbx_audit_revision_category.category software # _pdbx_audit_revision_item.ordinal 1 _pdbx_audit_revision_item.revision_ordinal 3 _pdbx_audit_revision_item.data_content_type 'Structure model' _pdbx_audit_revision_item.item '_software.name' # _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls.id 1 _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x 43.2328 _pdbx_refine_tls.origin_y 33.1224 _pdbx_refine_tls.origin_z 0.1269 _pdbx_refine_tls.T[1][1] 0.0970 _pdbx_refine_tls.T[2][2] 0.0655 _pdbx_refine_tls.T[3][3] 0.0601 _pdbx_refine_tls.T[1][2] 0.0711 _pdbx_refine_tls.T[1][3] -0.0331 _pdbx_refine_tls.T[2][3] -0.0248 _pdbx_refine_tls.L[1][1] 1.2947 _pdbx_refine_tls.L[2][2] 1.0886 _pdbx_refine_tls.L[3][3] 0.1440 _pdbx_refine_tls.L[1][2] -0.7910 _pdbx_refine_tls.L[1][3] 0.3705 _pdbx_refine_tls.L[2][3] -0.3593 _pdbx_refine_tls.S[1][1] 0.0599 _pdbx_refine_tls.S[2][2] -0.0266 _pdbx_refine_tls.S[3][3] -0.0333 _pdbx_refine_tls.S[1][2] 0.0757 _pdbx_refine_tls.S[1][3] -0.1005 _pdbx_refine_tls.S[2][3] -0.0131 _pdbx_refine_tls.S[2][1] -0.0528 _pdbx_refine_tls.S[3][1] 0.0472 _pdbx_refine_tls.S[3][2] 0.0329 # _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_auth_asym_id A _pdbx_refine_tls_group.beg_auth_seq_id -10 _pdbx_refine_tls_group.end_auth_asym_id A _pdbx_refine_tls_group.end_auth_seq_id 9999 _pdbx_refine_tls_group.selection_details ? _pdbx_refine_tls_group.beg_label_asym_id . _pdbx_refine_tls_group.beg_label_seq_id . _pdbx_refine_tls_group.end_label_asym_id . _pdbx_refine_tls_group.end_label_seq_id . _pdbx_refine_tls_group.selection ? # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal XSCALE . ? package 'Wolfgang Kabsch' ? 'data scaling' http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/xscale_program.html ? ? 1 REFMAC 5.5.0070 ? program 'Murshudov, G.N.' ccp4@dl.ac.uk refinement http://www.ccp4.ac.uk/main.html Fortran_77 ? 2 PDB_EXTRACT 3.004 'September 10, 2007' package PDB sw-help@rcsb.rutgers.edu 'data extraction' http://pdb.rutgers.edu/software/ C++ ? 3 MAR345 CCD ? ? ? ? 'data collection' ? ? ? 4 XDS . ? ? ? ? 'data reduction' ? ? ? 5 REFMAC 5.5.0070 ? ? ? ? phasing ? ? ? 6 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O A HOH 194 ? ? O A HOH 221 ? ? 1.73 2 1 CG A MSE 487 ? ? O A HOH 219 ? ? 1.83 3 1 O A HOH 81 ? ? O A HOH 178 ? ? 1.85 4 1 O A HOH 184 ? ? O A HOH 208 ? ? 1.96 5 1 O A HOH 32 ? ? O A HOH 222 ? ? 2.06 6 1 OD1 A ASP 354 ? A O A HOH 106 ? ? 2.14 7 1 SE A MSE 487 ? ? O A HOH 219 ? ? 2.16 8 1 O A HOH 17 ? ? O A HOH 174 ? ? 2.18 # loop_ _pdbx_validate_symm_contact.id _pdbx_validate_symm_contact.PDB_model_num _pdbx_validate_symm_contact.auth_atom_id_1 _pdbx_validate_symm_contact.auth_asym_id_1 _pdbx_validate_symm_contact.auth_comp_id_1 _pdbx_validate_symm_contact.auth_seq_id_1 _pdbx_validate_symm_contact.PDB_ins_code_1 _pdbx_validate_symm_contact.label_alt_id_1 _pdbx_validate_symm_contact.site_symmetry_1 _pdbx_validate_symm_contact.auth_atom_id_2 _pdbx_validate_symm_contact.auth_asym_id_2 _pdbx_validate_symm_contact.auth_comp_id_2 _pdbx_validate_symm_contact.auth_seq_id_2 _pdbx_validate_symm_contact.PDB_ins_code_2 _pdbx_validate_symm_contact.label_alt_id_2 _pdbx_validate_symm_contact.site_symmetry_2 _pdbx_validate_symm_contact.dist 1 1 O A HOH 187 ? ? 1_555 O A HOH 188 ? ? 4_665 1.24 2 1 O A HOH 147 ? ? 1_555 O A HOH 223 ? ? 1_556 1.61 3 1 O A HOH 48 ? ? 1_555 O A HOH 217 ? ? 4_665 1.97 4 1 O A HOH 48 ? ? 1_555 O A HOH 172 ? ? 4_665 2.04 5 1 O A HOH 145 ? ? 1_555 O A HOH 223 ? ? 1_556 2.07 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 CG A MSE 339 ? ? SE A MSE 339 ? ? 1.609 1.950 -0.341 0.034 N 2 1 CG A GLU 381 ? ? CD A GLU 381 ? ? 1.610 1.515 0.095 0.015 N 3 1 CA A ALA 421 ? ? CB A ALA 421 ? ? 1.666 1.520 0.146 0.021 N 4 1 C A THR 427 ? ? O A THR 427 ? ? 1.372 1.229 0.143 0.019 N 5 1 CD A GLU 505 ? ? OE2 A GLU 505 ? ? 1.184 1.252 -0.068 0.011 N 6 1 CZ A ARG 506 ? A NH1 A ARG 506 ? A 1.234 1.326 -0.092 0.013 N 7 1 CG A GLU 528 ? ? CD A GLU 528 ? ? 1.610 1.515 0.095 0.015 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 NE A ARG 342 ? ? CZ A ARG 342 ? ? NH2 A ARG 342 ? ? 116.55 120.30 -3.75 0.50 N 2 1 CG A MSE 379 ? ? SE A MSE 379 ? ? CE A MSE 379 ? ? 74.65 98.90 -24.25 2.20 N 3 1 CA A SER 417 ? ? CB A SER 417 ? ? OG A SER 417 ? ? 93.44 111.20 -17.76 2.70 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 SER A 426 ? ? -147.40 21.30 2 1 GLU A 452 ? ? 136.74 155.84 3 1 TRP A 486 ? ? 54.00 -129.32 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A TYR 532 ? CG ? A TYR 196 CG 2 1 Y 1 A TYR 532 ? CD1 ? A TYR 196 CD1 3 1 Y 1 A TYR 532 ? CD2 ? A TYR 196 CD2 4 1 Y 1 A TYR 532 ? CE1 ? A TYR 196 CE1 5 1 Y 1 A TYR 532 ? CE2 ? A TYR 196 CE2 6 1 Y 1 A TYR 532 ? CZ ? A TYR 196 CZ 7 1 Y 1 A TYR 532 ? OH ? A TYR 196 OH 8 1 Y 1 A LYS 533 ? CG ? A LYS 197 CG 9 1 Y 1 A LYS 533 ? CD ? A LYS 197 CD 10 1 Y 1 A LYS 533 ? CE ? A LYS 197 CE 11 1 Y 1 A LYS 533 ? NZ ? A LYS 197 NZ # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH #