data_3JZS # _entry.id 3JZS # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.281 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 3JZS RCSB RCSB055365 WWPDB D_1000055365 # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 3JZR 'MDM2 liganded with pDI6W' unspecified PDB 3JZO 'MDMX liganded with pDI' unspecified PDB 3JZP 'MDMX liganded with pDI6W' unspecified PDB 3JZQ 'MDMX liganded with pDIQ' unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3JZS _pdbx_database_status.recvd_initial_deposition_date 2009-09-24 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Schonbrunn, E.' 1 'Phan, J.' 2 # _citation.id primary _citation.title 'Structure-based design of high affinity peptides inhibiting the interaction of p53 with MDM2 and MDMX.' _citation.journal_abbrev J.Biol.Chem. _citation.journal_volume 285 _citation.page_first 2174 _citation.page_last 2183 _citation.year 2010 _citation.journal_id_ASTM JBCHA3 _citation.country US _citation.journal_id_ISSN 0021-9258 _citation.journal_id_CSD 0071 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 19910468 _citation.pdbx_database_id_DOI 10.1074/jbc.M109.073056 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Phan, J.' 1 primary 'Li, Z.' 2 primary 'Kasprzak, A.' 3 primary 'Li, B.' 4 primary 'Sebti, S.' 5 primary 'Guida, W.' 6 primary 'Schonbrunn, E.' 7 primary 'Chen, J.' 8 # _cell.entry_id 3JZS _cell.length_a 43.810 _cell.length_b 50.593 _cell.length_c 39.204 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3JZS _symmetry.space_group_name_H-M 'P 21 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'E3 ubiquitin-protein ligase Mdm2' 10173.018 1 6.3.2.- ? ? ? 2 polymer syn 'pDIQ peptide (12mer)' 1563.687 1 ? ? ? ? 3 non-polymer syn 1,2-ETHANEDIOL 62.068 1 ? ? ? ? 4 water nat water 18.015 55 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'p53-binding protein Mdm2, Oncoprotein Mdm2, Double minute 2 protein, Hdm2' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;QETLVRPKPLLLKLLKSVGAQKDTYTMKEVLFYLGQYIMTKRLYDEKQQHIVYCSNDLLGDLFGVPSFSVKEHRKIYTMI YRNLVV ; ;QETLVRPKPLLLKLLKSVGAQKDTYTMKEVLFYLGQYIMTKRLYDEKQQHIVYCSNDLLGDLFGVPSFSVKEHRKIYTMI YRNLVV ; A ? 2 'polypeptide(L)' no no ETFEHWWSQLLS ETFEHWWSQLLS P ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLN n 1 2 GLU n 1 3 THR n 1 4 LEU n 1 5 VAL n 1 6 ARG n 1 7 PRO n 1 8 LYS n 1 9 PRO n 1 10 LEU n 1 11 LEU n 1 12 LEU n 1 13 LYS n 1 14 LEU n 1 15 LEU n 1 16 LYS n 1 17 SER n 1 18 VAL n 1 19 GLY n 1 20 ALA n 1 21 GLN n 1 22 LYS n 1 23 ASP n 1 24 THR n 1 25 TYR n 1 26 THR n 1 27 MET n 1 28 LYS n 1 29 GLU n 1 30 VAL n 1 31 LEU n 1 32 PHE n 1 33 TYR n 1 34 LEU n 1 35 GLY n 1 36 GLN n 1 37 TYR n 1 38 ILE n 1 39 MET n 1 40 THR n 1 41 LYS n 1 42 ARG n 1 43 LEU n 1 44 TYR n 1 45 ASP n 1 46 GLU n 1 47 LYS n 1 48 GLN n 1 49 GLN n 1 50 HIS n 1 51 ILE n 1 52 VAL n 1 53 TYR n 1 54 CYS n 1 55 SER n 1 56 ASN n 1 57 ASP n 1 58 LEU n 1 59 LEU n 1 60 GLY n 1 61 ASP n 1 62 LEU n 1 63 PHE n 1 64 GLY n 1 65 VAL n 1 66 PRO n 1 67 SER n 1 68 PHE n 1 69 SER n 1 70 VAL n 1 71 LYS n 1 72 GLU n 1 73 HIS n 1 74 ARG n 1 75 LYS n 1 76 ILE n 1 77 TYR n 1 78 THR n 1 79 MET n 1 80 ILE n 1 81 TYR n 1 82 ARG n 1 83 ASN n 1 84 LEU n 1 85 VAL n 1 86 VAL n 2 1 GLU n 2 2 THR n 2 3 PHE n 2 4 GLU n 2 5 HIS n 2 6 TRP n 2 7 TRP n 2 8 SER n 2 9 GLN n 2 10 LEU n 2 11 LEU n 2 12 SER n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene MDM2 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21-Gold (DE3) pLysS' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pDEST-His-MBP _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP MDM2_HUMAN Q00987 1 ;QETLVRPKPLLLKLLKSVGAQKDTYTMKEVLFYLGQYIMTKRLYDEKQQHIVYCSNDLLGDLFGVPSFSVKEHRKIYTMI YRNLVV ; 24 ? 2 PDB 3JZS 3JZS 2 ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3JZS A 1 ? 86 ? Q00987 24 ? 109 ? 24 109 2 2 3JZS P 1 ? 12 ? 3JZS 1 ? 12 ? 1 12 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 EDO non-polymer . 1,2-ETHANEDIOL 'ETHYLENE GLYCOL' 'C2 H6 O2' 62.068 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3JZS _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 1.85 _exptl_crystal.density_percent_sol 33.55 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 292 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 8.5 _exptl_crystal_grow.pdbx_details '30% PEGmme2000, 100 mM Tris HCl, 200 mM MgCl2, pH 8.5, VAPOR DIFFUSION, HANGING DROP, temperature 292K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 93 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'RIGAKU RAXIS HTC' _diffrn_detector.pdbx_collection_date ? _diffrn_detector.details mirrors # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator mirrors _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.54 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'RIGAKU MICROMAX-007 HF' _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.54 # _reflns.entry_id 3JZS _reflns.observed_criterion_sigma_I 0 _reflns.observed_criterion_sigma_F 0 _reflns.d_resolution_low 30 _reflns.d_resolution_high 1.78 _reflns.number_obs 8640 _reflns.number_all 8640 _reflns.percent_possible_obs 98.1 _reflns.pdbx_Rmerge_I_obs 0.037 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 25.9 _reflns.B_iso_Wilson_estimate 27.1 _reflns.pdbx_redundancy 2.8 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 1.78 _reflns_shell.d_res_low 1.84 _reflns_shell.percent_possible_all 99.3 _reflns_shell.Rmerge_I_obs 0.11 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 9.5 _reflns_shell.pdbx_redundancy 2.8 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 833 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 3JZS _refine.ls_number_reflns_obs 8542 _refine.ls_number_reflns_all 8542 _refine.pdbx_ls_sigma_I 0 _refine.pdbx_ls_sigma_F 0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 29.2 _refine.ls_d_res_high 1.78 _refine.ls_percent_reflns_obs 97.3 _refine.ls_R_factor_obs ? _refine.ls_R_factor_all 0.215 _refine.ls_R_factor_R_work 0.215 _refine.ls_R_factor_R_free 0.253 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free 829 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model 'pdb entry 1T4F' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details random _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 3JZS _refine_analyze.Luzzati_coordinate_error_obs 0.22 _refine_analyze.Luzzati_sigma_a_obs 0.15 _refine_analyze.Luzzati_d_res_low_obs 5.0 _refine_analyze.Luzzati_coordinate_error_free 0.28 _refine_analyze.Luzzati_sigma_a_free 0.19 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 801 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 4 _refine_hist.number_atoms_solvent 55 _refine_hist.number_atoms_total 860 _refine_hist.d_res_high 1.78 _refine_hist.d_res_low 29.2 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.015 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.6 ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used ? _refine_ls_shell.d_res_high 1.78 _refine_ls_shell.d_res_low 1.89 _refine_ls_shell.number_reflns_R_work ? _refine_ls_shell.R_factor_R_work 0.267 _refine_ls_shell.percent_reflns_obs 96.8 _refine_ls_shell.R_factor_R_free 0.336 _refine_ls_shell.R_factor_R_free_error 0.029 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 131 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs 1244 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3JZS _struct.title 'Human MDM2 liganded with a 12mer peptide inhibitor (pDIQ)' _struct.pdbx_descriptor 'E3 ubiquitin-protein ligase Mdm2 (E.C.6.3.2.-), pDIQ peptide (12mer)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3JZS _struct_keywords.pdbx_keywords LIGASE _struct_keywords.text ;P53-BINDING PROTEIN MDM2, ONCOPROTEIN MDM2, DOUBLE MINUTE 2 PROTEIN, HDM2, Alternative splicing, Cytoplasm, Host-virus interaction, Ligase, Metal-binding, Nucleus, Phosphoprotein, Proto-oncogene, Ubl conjugation, Ubl conjugation pathway, Zinc, Zinc-finger ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 4 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 LYS A 8 ? VAL A 18 ? LYS A 31 VAL A 41 1 ? 11 HELX_P HELX_P2 2 MET A 27 ? LYS A 41 ? MET A 50 LYS A 64 1 ? 15 HELX_P HELX_P3 3 ASP A 57 ? GLY A 64 ? ASP A 80 GLY A 87 1 ? 8 HELX_P HELX_P4 4 GLU A 72 ? ASN A 83 ? GLU A 95 ASN A 106 1 ? 12 HELX_P HELX_P5 5 THR B 2 ? LEU B 10 ? THR P 2 LEU P 10 1 ? 9 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 2 ? B ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel B 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 LEU A 4 ? VAL A 5 ? LEU A 27 VAL A 28 A 2 TYR A 25 ? THR A 26 ? TYR A 48 THR A 49 B 1 ILE A 51 ? TYR A 53 ? ILE A 74 TYR A 76 B 2 SER A 67 ? SER A 69 ? SER A 90 SER A 92 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N VAL A 5 ? N VAL A 28 O TYR A 25 ? O TYR A 48 B 1 2 N VAL A 52 ? N VAL A 75 O PHE A 68 ? O PHE A 91 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id ? _struct_site.pdbx_auth_comp_id ? _struct_site.pdbx_auth_seq_id ? _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 6 _struct_site.details 'BINDING SITE FOR RESIDUE EDO P 201' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 LYS A 28 ? LYS A 51 . ? 2_455 ? 2 AC1 6 GLU B 4 ? GLU P 4 . ? 1_555 ? 3 AC1 6 SER B 8 ? SER P 8 . ? 1_555 ? 4 AC1 6 LEU B 11 ? LEU P 11 . ? 1_555 ? 5 AC1 6 LEU B 11 ? LEU P 11 . ? 2_455 ? 6 AC1 6 HOH E . ? HOH P 46 . ? 1_555 ? # _database_PDB_matrix.entry_id 3JZS _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3JZS _atom_sites.fract_transf_matrix[1][1] 0.022826 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.019766 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.025508 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLN 1 24 ? ? ? A . n A 1 2 GLU 2 25 ? ? ? A . n A 1 3 THR 3 26 26 THR THR A . n A 1 4 LEU 4 27 27 LEU LEU A . n A 1 5 VAL 5 28 28 VAL VAL A . n A 1 6 ARG 6 29 29 ARG ARG A . n A 1 7 PRO 7 30 30 PRO PRO A . n A 1 8 LYS 8 31 31 LYS LYS A . n A 1 9 PRO 9 32 32 PRO PRO A . n A 1 10 LEU 10 33 33 LEU LEU A . n A 1 11 LEU 11 34 34 LEU LEU A . n A 1 12 LEU 12 35 35 LEU LEU A . n A 1 13 LYS 13 36 36 LYS LYS A . n A 1 14 LEU 14 37 37 LEU LEU A . n A 1 15 LEU 15 38 38 LEU LEU A . n A 1 16 LYS 16 39 39 LYS LYS A . n A 1 17 SER 17 40 40 SER SER A . n A 1 18 VAL 18 41 41 VAL VAL A . n A 1 19 GLY 19 42 42 GLY GLY A . n A 1 20 ALA 20 43 43 ALA ALA A . n A 1 21 GLN 21 44 44 GLN GLN A . n A 1 22 LYS 22 45 45 LYS LYS A . n A 1 23 ASP 23 46 46 ASP ASP A . n A 1 24 THR 24 47 47 THR THR A . n A 1 25 TYR 25 48 48 TYR TYR A . n A 1 26 THR 26 49 49 THR THR A . n A 1 27 MET 27 50 50 MET MET A . n A 1 28 LYS 28 51 51 LYS LYS A . n A 1 29 GLU 29 52 52 GLU GLU A . n A 1 30 VAL 30 53 53 VAL VAL A . n A 1 31 LEU 31 54 54 LEU LEU A . n A 1 32 PHE 32 55 55 PHE PHE A . n A 1 33 TYR 33 56 56 TYR TYR A . n A 1 34 LEU 34 57 57 LEU LEU A . n A 1 35 GLY 35 58 58 GLY GLY A . n A 1 36 GLN 36 59 59 GLN GLN A . n A 1 37 TYR 37 60 60 TYR TYR A . n A 1 38 ILE 38 61 61 ILE ILE A . n A 1 39 MET 39 62 62 MET MET A . n A 1 40 THR 40 63 63 THR THR A . n A 1 41 LYS 41 64 64 LYS LYS A . n A 1 42 ARG 42 65 65 ARG ARG A . n A 1 43 LEU 43 66 66 LEU LEU A . n A 1 44 TYR 44 67 67 TYR TYR A . n A 1 45 ASP 45 68 68 ASP ASP A . n A 1 46 GLU 46 69 69 GLU GLU A . n A 1 47 LYS 47 70 70 LYS LYS A . n A 1 48 GLN 48 71 71 GLN GLN A . n A 1 49 GLN 49 72 72 GLN GLN A . n A 1 50 HIS 50 73 73 HIS HIS A . n A 1 51 ILE 51 74 74 ILE ILE A . n A 1 52 VAL 52 75 75 VAL VAL A . n A 1 53 TYR 53 76 76 TYR TYR A . n A 1 54 CYS 54 77 77 CYS CYS A . n A 1 55 SER 55 78 78 SER SER A . n A 1 56 ASN 56 79 79 ASN ASN A . n A 1 57 ASP 57 80 80 ASP ASP A . n A 1 58 LEU 58 81 81 LEU LEU A . n A 1 59 LEU 59 82 82 LEU LEU A . n A 1 60 GLY 60 83 83 GLY GLY A . n A 1 61 ASP 61 84 84 ASP ASP A . n A 1 62 LEU 62 85 85 LEU LEU A . n A 1 63 PHE 63 86 86 PHE PHE A . n A 1 64 GLY 64 87 87 GLY GLY A . n A 1 65 VAL 65 88 88 VAL VAL A . n A 1 66 PRO 66 89 89 PRO PRO A . n A 1 67 SER 67 90 90 SER SER A . n A 1 68 PHE 68 91 91 PHE PHE A . n A 1 69 SER 69 92 92 SER SER A . n A 1 70 VAL 70 93 93 VAL VAL A . n A 1 71 LYS 71 94 94 LYS LYS A . n A 1 72 GLU 72 95 95 GLU GLU A . n A 1 73 HIS 73 96 96 HIS HIS A . n A 1 74 ARG 74 97 97 ARG ARG A . n A 1 75 LYS 75 98 98 LYS LYS A . n A 1 76 ILE 76 99 99 ILE ILE A . n A 1 77 TYR 77 100 100 TYR TYR A . n A 1 78 THR 78 101 101 THR THR A . n A 1 79 MET 79 102 102 MET MET A . n A 1 80 ILE 80 103 103 ILE ILE A . n A 1 81 TYR 81 104 104 TYR TYR A . n A 1 82 ARG 82 105 105 ARG ARG A . n A 1 83 ASN 83 106 106 ASN ASN A . n A 1 84 LEU 84 107 107 LEU LEU A . n A 1 85 VAL 85 108 108 VAL VAL A . n A 1 86 VAL 86 109 ? ? ? A . n B 2 1 GLU 1 1 1 GLU GLU P . n B 2 2 THR 2 2 2 THR THR P . n B 2 3 PHE 3 3 3 PHE PHE P . n B 2 4 GLU 4 4 4 GLU GLU P . n B 2 5 HIS 5 5 5 HIS HIS P . n B 2 6 TRP 6 6 6 TRP TRP P . n B 2 7 TRP 7 7 7 TRP TRP P . n B 2 8 SER 8 8 8 SER SER P . n B 2 9 GLN 9 9 9 GLN GLN P . n B 2 10 LEU 10 10 10 LEU LEU P . n B 2 11 LEU 11 11 11 LEU LEU P . n B 2 12 SER 12 12 12 SER SER P . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 1360 ? 1 MORE -11 ? 1 'SSA (A^2)' 5460 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2009-11-10 2 'Structure model' 1 1 2011-07-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Version format compliance' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal StructureStudio 'data collection' . ? 1 CNS refinement . ? 2 HKL-2000 'data reduction' . ? 3 HKL-2000 'data scaling' . ? 4 CNS phasing . ? 5 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 GLN A 72 ? ? -69.99 4.80 2 1 ASN A 79 ? ? -104.00 45.40 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLN 24 ? A GLN 1 2 1 Y 1 A GLU 25 ? A GLU 2 3 1 Y 1 A VAL 109 ? A VAL 86 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 1,2-ETHANEDIOL EDO 4 water HOH # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 EDO 1 201 201 EDO EDO P . D 4 HOH 1 1 1 HOH HOH A . D 4 HOH 2 3 3 HOH HOH A . D 4 HOH 3 4 4 HOH HOH A . D 4 HOH 4 5 5 HOH HOH A . D 4 HOH 5 6 6 HOH HOH A . D 4 HOH 6 7 7 HOH HOH A . D 4 HOH 7 8 8 HOH HOH A . D 4 HOH 8 11 11 HOH HOH A . D 4 HOH 9 12 12 HOH HOH A . D 4 HOH 10 13 13 HOH HOH A . D 4 HOH 11 15 15 HOH HOH A . D 4 HOH 12 16 16 HOH HOH A . D 4 HOH 13 17 17 HOH HOH A . D 4 HOH 14 18 18 HOH HOH A . D 4 HOH 15 19 19 HOH HOH A . D 4 HOH 16 20 20 HOH HOH A . D 4 HOH 17 22 22 HOH HOH A . D 4 HOH 18 23 23 HOH HOH A . D 4 HOH 19 110 24 HOH HOH A . D 4 HOH 20 111 25 HOH HOH A . D 4 HOH 21 112 26 HOH HOH A . D 4 HOH 22 113 27 HOH HOH A . D 4 HOH 23 114 28 HOH HOH A . D 4 HOH 24 115 29 HOH HOH A . D 4 HOH 25 116 32 HOH HOH A . D 4 HOH 26 117 33 HOH HOH A . D 4 HOH 27 118 34 HOH HOH A . D 4 HOH 28 119 35 HOH HOH A . D 4 HOH 29 120 36 HOH HOH A . D 4 HOH 30 121 37 HOH HOH A . D 4 HOH 31 122 40 HOH HOH A . D 4 HOH 32 123 41 HOH HOH A . D 4 HOH 33 124 42 HOH HOH A . D 4 HOH 34 125 43 HOH HOH A . D 4 HOH 35 126 44 HOH HOH A . D 4 HOH 36 127 45 HOH HOH A . D 4 HOH 37 128 47 HOH HOH A . D 4 HOH 38 129 48 HOH HOH A . D 4 HOH 39 130 49 HOH HOH A . D 4 HOH 40 131 51 HOH HOH A . D 4 HOH 41 132 52 HOH HOH A . D 4 HOH 42 133 53 HOH HOH A . D 4 HOH 43 134 54 HOH HOH A . D 4 HOH 44 135 55 HOH HOH A . E 4 HOH 1 13 2 HOH HOH P . E 4 HOH 2 14 14 HOH HOH P . E 4 HOH 3 15 10 HOH HOH P . E 4 HOH 4 16 9 HOH HOH P . E 4 HOH 5 21 21 HOH HOH P . E 4 HOH 6 30 30 HOH HOH P . E 4 HOH 7 31 31 HOH HOH P . E 4 HOH 8 38 38 HOH HOH P . E 4 HOH 9 39 39 HOH HOH P . E 4 HOH 10 46 46 HOH HOH P . E 4 HOH 11 50 50 HOH HOH P . #